Query psy10429
Match_columns 207
No_of_seqs 102 out of 1082
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 17:38:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0022 AcoB Pyruvate/2-oxoglu 100.0 5.3E-63 1.1E-67 418.5 20.0 203 1-207 2-205 (324)
2 PRK11892 pyruvate dehydrogenas 100.0 1.4E-55 3E-60 399.8 22.7 204 1-207 142-345 (464)
3 CHL00144 odpB pyruvate dehydro 100.0 3.9E-55 8.4E-60 382.7 22.9 203 1-207 4-206 (327)
4 PRK09212 pyruvate dehydrogenas 100.0 2.2E-54 4.8E-59 378.1 23.0 203 1-207 4-206 (327)
5 PLN02683 pyruvate dehydrogenas 100.0 2.4E-54 5.1E-59 381.4 22.9 207 1-207 27-233 (356)
6 KOG0524|consensus 100.0 5.6E-54 1.2E-58 357.3 15.0 207 1-207 35-241 (359)
7 PTZ00182 3-methyl-2-oxobutanat 100.0 2.2E-52 4.8E-57 368.7 22.1 204 1-207 35-238 (355)
8 COG3958 Transketolase, C-termi 100.0 2.5E-49 5.5E-54 333.3 19.5 187 2-207 8-197 (312)
9 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 1.2E-48 2.6E-53 312.1 18.7 167 5-171 1-167 (167)
10 KOG0525|consensus 100.0 1.8E-49 3.9E-54 326.7 7.7 203 1-207 41-244 (362)
11 PLN02225 1-deoxy-D-xylulose-5- 100.0 3.6E-43 7.9E-48 328.9 21.4 189 1-207 381-572 (701)
12 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 7.8E-42 1.7E-46 320.3 21.8 187 2-207 311-500 (617)
13 PLN02234 1-deoxy-D-xylulose-5- 100.0 9.4E-42 2E-46 318.5 21.6 190 1-207 357-549 (641)
14 cd07033 TPP_PYR_DXS_TK_like Py 100.0 2E-41 4.3E-46 267.7 18.1 152 5-170 1-155 (156)
15 PLN02582 1-deoxy-D-xylulose-5- 100.0 3.7E-41 8E-46 316.6 22.1 189 2-207 357-548 (677)
16 PRK05444 1-deoxy-D-xylulose-5- 100.0 7.7E-41 1.7E-45 312.2 21.0 186 2-207 280-468 (580)
17 PRK12571 1-deoxy-D-xylulose-5- 100.0 9.6E-41 2.1E-45 314.0 21.7 187 2-207 320-509 (641)
18 PRK12315 1-deoxy-D-xylulose-5- 100.0 8.4E-41 1.8E-45 311.6 20.9 185 2-207 279-465 (581)
19 PF02779 Transket_pyr: Transke 100.0 1.5E-40 3.2E-45 267.8 14.7 168 1-176 3-177 (178)
20 COG1154 Dxs Deoxyxylulose-5-ph 100.0 6E-39 1.3E-43 292.0 20.7 187 2-207 317-506 (627)
21 PRK05899 transketolase; Review 100.0 2.7E-36 5.8E-41 283.8 20.7 183 2-207 320-515 (624)
22 smart00861 Transket_pyr Transk 100.0 1.3E-34 2.9E-39 230.7 18.2 155 2-170 1-165 (168)
23 PTZ00089 transketolase; Provis 100.0 1.4E-34 3E-39 273.3 20.7 189 2-207 356-553 (661)
24 PRK12753 transketolase; Review 100.0 2.1E-34 4.6E-39 271.9 20.9 187 2-207 356-554 (663)
25 TIGR00232 tktlase_bact transke 100.0 2.6E-34 5.5E-39 271.1 21.1 187 2-207 350-545 (653)
26 PRK12754 transketolase; Review 100.0 9.7E-34 2.1E-38 266.6 20.1 187 2-207 356-554 (663)
27 PLN02790 transketolase 100.0 4.3E-33 9.3E-38 262.9 21.3 188 2-207 345-545 (654)
28 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 1.3E-32 2.9E-37 264.1 18.1 189 1-195 586-800 (929)
29 PRK09404 sucA 2-oxoglutarate d 100.0 5.4E-32 1.2E-36 260.7 18.4 199 1-206 584-808 (924)
30 KOG0523|consensus 100.0 3.7E-31 8.1E-36 240.1 14.8 183 2-207 321-510 (632)
31 PRK09405 aceE pyruvate dehydro 100.0 2.8E-29 6.2E-34 240.2 20.6 192 1-207 495-732 (891)
32 TIGR03186 AKGDH_not_PDH alpha- 100.0 8.8E-28 1.9E-32 229.9 18.8 192 1-207 490-729 (889)
33 PRK13012 2-oxoacid dehydrogena 99.9 8.5E-27 1.8E-31 223.8 19.3 193 1-207 503-737 (896)
34 COG0021 TktA Transketolase [Ca 99.9 5E-22 1.1E-26 182.6 16.8 183 2-202 355-544 (663)
35 cd06586 TPP_enzyme_PYR Pyrimid 99.5 2.7E-13 5.8E-18 105.4 13.3 146 11-170 3-153 (154)
36 PRK05261 putative phosphoketol 99.4 3.3E-12 7.1E-17 122.1 15.7 163 3-171 393-580 (785)
37 PRK12270 kgd alpha-ketoglutara 98.3 7.1E-06 1.5E-10 80.0 12.7 162 10-179 896-1083(1228)
38 PRK08659 2-oxoglutarate ferred 98.3 1.6E-05 3.5E-10 71.2 13.8 126 43-180 45-180 (376)
39 PF01855 POR_N: Pyruvate flavo 98.3 4.2E-06 9.2E-11 70.2 8.4 114 50-174 38-157 (230)
40 TIGR03336 IOR_alpha indolepyru 98.3 1.2E-05 2.6E-10 76.0 12.3 122 49-180 47-172 (595)
41 COG4231 Indolepyruvate ferredo 98.3 1.6E-05 3.5E-10 74.3 12.7 123 48-180 58-184 (640)
42 PRK07119 2-ketoisovalerate fer 98.2 4E-05 8.7E-10 68.1 13.1 126 41-179 43-179 (352)
43 TIGR03710 OAFO_sf 2-oxoacid:ac 98.1 3.8E-05 8.2E-10 72.2 11.7 121 49-179 238-368 (562)
44 PRK09627 oorA 2-oxoglutarate-a 98.1 5.2E-05 1.1E-09 67.9 11.8 120 48-179 48-178 (375)
45 PRK08366 vorA 2-ketoisovalerat 97.9 0.00024 5.3E-09 64.0 12.4 107 54-172 55-167 (390)
46 COG3957 Phosphoketolase [Carbo 97.8 0.00043 9.4E-09 65.6 13.6 155 5-165 405-584 (793)
47 PRK09622 porA pyruvate flavodo 97.8 0.00025 5.4E-09 64.2 11.2 113 49-173 58-177 (407)
48 cd07034 TPP_PYR_PFOR_IOR-alpha 97.8 0.0021 4.6E-08 50.2 15.1 119 36-168 27-157 (160)
49 COG0567 SucA 2-oxoglutarate de 97.7 4.8E-05 1E-09 73.8 6.0 163 11-178 576-761 (906)
50 PF03894 XFP: D-xylulose 5-pho 97.7 0.0026 5.6E-08 51.1 14.3 155 5-161 2-179 (179)
51 PRK08367 porA pyruvate ferredo 97.5 0.0012 2.5E-08 59.7 11.3 108 54-172 56-170 (394)
52 cd07035 TPP_PYR_POX_like Pyrim 97.5 0.0024 5.2E-08 49.6 11.3 112 48-170 35-154 (155)
53 TIGR00759 aceE pyruvate dehydr 97.4 0.004 8.6E-08 61.0 14.4 156 2-170 490-686 (885)
54 KOG0451|consensus 97.4 0.0003 6.5E-09 65.2 6.4 167 2-177 565-768 (913)
55 KOG0450|consensus 97.3 0.003 6.5E-08 60.1 10.9 161 10-178 658-863 (1017)
56 PRK13030 2-oxoacid ferredoxin 97.2 0.0011 2.4E-08 66.8 8.4 122 49-180 75-211 (1159)
57 TIGR03297 Ppyr-DeCO2ase phosph 97.1 0.0045 9.7E-08 55.3 10.5 124 41-174 20-155 (361)
58 PF02776 TPP_enzyme_N: Thiamin 97.1 0.0084 1.8E-07 47.6 10.4 129 36-176 29-166 (172)
59 cd02004 TPP_BZL_OCoD_HPCL Thia 96.8 0.038 8.2E-07 43.7 12.4 112 47-168 38-168 (172)
60 PRK09193 indolepyruvate ferred 96.8 0.0036 7.9E-08 63.2 7.8 122 49-180 83-219 (1165)
61 cd02001 TPP_ComE_PpyrDC Thiami 96.7 0.064 1.4E-06 42.1 12.5 144 4-168 1-151 (157)
62 TIGR03845 sulfopyru_alph sulfo 96.6 0.098 2.1E-06 41.2 13.3 107 54-171 40-154 (157)
63 cd02014 TPP_POX Thiamine pyrop 96.5 0.2 4.3E-06 39.9 14.2 116 41-168 36-169 (178)
64 cd02009 TPP_SHCHC_synthase Thi 96.4 0.11 2.3E-06 41.5 12.3 113 45-168 39-171 (175)
65 PRK13029 2-oxoacid ferredoxin 96.4 0.0075 1.6E-07 61.0 6.6 123 48-180 85-222 (1186)
66 cd02015 TPP_AHAS Thiamine pyro 96.3 0.16 3.6E-06 40.6 13.2 111 47-168 40-170 (186)
67 cd02010 TPP_ALS Thiamine pyrop 96.3 0.13 2.9E-06 41.1 12.5 111 47-168 38-166 (177)
68 cd07039 TPP_PYR_POX Pyrimidine 96.3 0.11 2.4E-06 41.1 11.8 124 36-171 28-158 (164)
69 PRK11866 2-oxoacid ferredoxin 96.3 0.12 2.5E-06 44.7 12.6 102 58-168 62-188 (279)
70 COG0674 PorA Pyruvate:ferredox 96.2 0.11 2.3E-06 46.7 12.1 111 53-174 52-168 (365)
71 TIGR02176 pyruv_ox_red pyruvat 96.0 0.11 2.4E-06 53.1 12.6 106 54-170 57-168 (1165)
72 cd07037 TPP_PYR_MenD Pyrimidin 95.9 0.12 2.5E-06 41.0 10.2 111 49-169 37-160 (162)
73 TIGR03846 sulfopy_beta sulfopy 95.9 0.54 1.2E-05 37.8 14.3 142 4-168 1-152 (181)
74 PF02775 TPP_enzyme_C: Thiamin 95.9 0.12 2.7E-06 39.9 9.9 111 46-167 17-151 (153)
75 TIGR02418 acolac_catab acetola 95.8 0.5 1.1E-05 44.1 15.4 116 48-174 37-160 (539)
76 PRK06466 acetolactate synthase 95.8 0.46 1E-05 44.8 15.2 126 37-174 33-166 (574)
77 COG2609 AceE Pyruvate dehydrog 95.7 0.1 2.2E-06 50.1 10.4 151 2-160 493-675 (887)
78 cd02002 TPP_BFDC Thiamine pyro 95.7 0.24 5.2E-06 39.2 11.2 111 47-168 40-175 (178)
79 cd00568 TPP_enzymes Thiamine p 95.7 0.16 3.4E-06 39.5 9.8 99 59-168 50-165 (168)
80 cd02003 TPP_IolD Thiamine pyro 95.6 0.63 1.4E-05 38.0 13.6 111 47-168 38-180 (205)
81 cd02013 TPP_Xsc_like Thiamine 95.6 0.31 6.8E-06 39.5 11.7 111 47-168 43-175 (196)
82 TIGR02177 PorB_KorB 2-oxoacid: 95.5 0.38 8.3E-06 41.7 12.6 141 4-167 13-181 (287)
83 PRK07710 acetolactate synthase 95.5 0.79 1.7E-05 43.2 15.7 149 8-174 19-177 (571)
84 TIGR00118 acolac_lg acetolacta 95.5 0.2 4.3E-06 47.0 11.6 126 37-174 30-163 (558)
85 PRK07979 acetolactate synthase 95.5 0.22 4.8E-06 46.9 12.0 150 8-174 7-166 (574)
86 PRK08979 acetolactate synthase 95.5 0.71 1.5E-05 43.5 15.4 149 8-174 7-166 (572)
87 cd03371 TPP_PpyrDC Thiamine py 95.4 0.86 1.9E-05 36.8 13.7 110 47-168 41-159 (188)
88 PRK09107 acetolactate synthase 95.4 0.71 1.5E-05 43.8 15.0 152 7-174 13-173 (595)
89 PRK06048 acetolactate synthase 95.4 0.87 1.9E-05 42.8 15.5 150 8-174 11-169 (561)
90 PRK11865 pyruvate ferredoxin o 95.4 0.74 1.6E-05 40.2 13.8 102 58-168 72-207 (299)
91 cd02018 TPP_PFOR Thiamine pyro 95.3 1.4 3E-05 37.0 15.0 111 47-168 52-199 (237)
92 PRK07092 benzoylformate decarb 95.3 1 2.2E-05 42.0 15.6 115 49-174 50-173 (530)
93 PLN02470 acetolactate synthase 95.3 0.68 1.5E-05 43.8 14.6 150 8-174 16-175 (585)
94 PRK08155 acetolactate synthase 95.3 0.38 8.2E-06 45.2 12.8 111 47-168 409-539 (564)
95 PRK08199 thiamine pyrophosphat 95.3 0.27 5.9E-06 46.1 11.7 154 7-176 10-172 (557)
96 PRK06456 acetolactate synthase 95.2 0.27 5.8E-06 46.3 11.6 111 53-174 48-167 (572)
97 PRK06882 acetolactate synthase 95.2 1.2 2.7E-05 41.8 16.0 150 8-173 7-165 (574)
98 PRK08322 acetolactate synthase 95.2 0.29 6.4E-06 45.7 11.8 126 37-175 30-163 (547)
99 PRK08155 acetolactate synthase 95.2 0.78 1.7E-05 43.1 14.6 151 8-174 16-175 (564)
100 PRK07789 acetolactate synthase 95.2 1 2.2E-05 42.8 15.5 152 8-175 34-194 (612)
101 PRK11867 2-oxoglutarate ferred 95.1 0.47 1E-05 41.1 11.8 101 58-167 72-197 (286)
102 PRK07418 acetolactate synthase 95.0 1.2 2.6E-05 42.4 15.5 154 7-175 21-185 (616)
103 PRK08611 pyruvate oxidase; Pro 94.9 1.9 4.1E-05 40.8 16.3 152 8-175 7-167 (576)
104 PRK06725 acetolactate synthase 94.9 0.34 7.3E-06 45.8 11.1 148 8-174 18-176 (570)
105 PRK08978 acetolactate synthase 94.8 0.37 8E-06 45.1 11.2 116 48-174 39-162 (548)
106 PRK07282 acetolactate synthase 94.8 0.37 8.1E-06 45.4 11.1 150 8-174 13-172 (566)
107 PRK06965 acetolactate synthase 94.7 2.5 5.3E-05 40.1 16.5 151 8-174 24-183 (587)
108 cd02008 TPP_IOR_alpha Thiamine 94.7 0.35 7.5E-06 38.5 9.3 98 61-168 57-173 (178)
109 PRK05858 hypothetical protein; 94.5 0.71 1.5E-05 43.2 12.2 116 48-174 43-166 (542)
110 PRK07586 hypothetical protein; 94.5 0.73 1.6E-05 42.8 12.2 114 49-174 41-163 (514)
111 PRK11269 glyoxylate carboligas 94.4 2.8 6E-05 39.7 16.2 150 8-174 7-167 (591)
112 PRK08527 acetolactate synthase 94.4 0.69 1.5E-05 43.5 12.0 114 49-174 43-165 (563)
113 PRK11869 2-oxoacid ferredoxin 94.4 1 2.2E-05 39.0 12.1 144 3-167 19-188 (280)
114 PRK06163 hypothetical protein; 94.2 1.1 2.3E-05 36.9 11.4 146 4-168 15-169 (202)
115 PRK06276 acetolactate synthase 94.2 0.64 1.4E-05 44.0 11.3 114 49-174 40-162 (586)
116 cd03376 TPP_PFOR_porB_like Thi 94.2 2.8 6E-05 35.1 14.0 99 59-167 62-195 (235)
117 PRK11864 2-ketoisovalerate fer 94.1 0.61 1.3E-05 40.7 10.2 110 50-168 66-203 (300)
118 PRK07064 hypothetical protein; 94.1 0.97 2.1E-05 42.2 12.2 114 49-174 43-168 (544)
119 PRK09124 pyruvate dehydrogenas 94.1 0.83 1.8E-05 43.1 11.8 125 37-174 32-164 (574)
120 PRK06457 pyruvate dehydrogenas 94.0 0.57 1.2E-05 43.9 10.6 116 49-175 41-163 (549)
121 PRK07525 sulfoacetaldehyde ace 94.0 0.71 1.5E-05 43.7 11.3 150 8-175 9-167 (588)
122 PRK08617 acetolactate synthase 94.0 0.8 1.7E-05 42.9 11.5 125 36-174 33-166 (552)
123 PRK06112 acetolactate synthase 93.9 0.95 2.1E-05 42.7 12.0 118 48-176 50-175 (578)
124 PRK07449 2-succinyl-5-enolpyru 93.9 1.1 2.4E-05 42.1 12.4 152 6-172 10-174 (568)
125 PRK06457 pyruvate dehydrogenas 93.9 1.9 4.1E-05 40.5 13.8 111 47-168 386-515 (549)
126 TIGR03254 oxalate_oxc oxalyl-C 93.8 1.5 3.2E-05 41.2 13.0 145 8-168 372-534 (554)
127 cd03375 TPP_OGFOR Thiamine pyr 93.8 0.98 2.1E-05 36.6 10.3 99 60-168 56-180 (193)
128 PRK08617 acetolactate synthase 93.7 1.6 3.4E-05 41.0 12.9 108 47-168 404-532 (552)
129 cd02006 TPP_Gcl Thiamine pyrop 93.7 0.81 1.8E-05 37.2 9.8 115 41-168 42-190 (202)
130 COG4032 Predicted thiamine-pyr 93.6 0.2 4.4E-06 39.0 5.5 117 41-169 36-161 (172)
131 TIGR00118 acolac_lg acetolacta 93.6 0.94 2E-05 42.5 11.2 113 44-168 400-532 (558)
132 TIGR03254 oxalate_oxc oxalyl-C 93.6 1.1 2.4E-05 42.0 11.7 116 49-175 42-167 (554)
133 cd03372 TPP_ComE Thiamine pyro 93.5 3.1 6.8E-05 33.2 13.9 142 4-168 1-151 (179)
134 PRK09628 oorB 2-oxoglutarate-a 93.3 4.6 0.0001 34.8 14.1 141 6-167 30-196 (277)
135 PRK08266 hypothetical protein; 93.2 1.8 4E-05 40.4 12.4 111 47-168 392-521 (542)
136 PRK07524 hypothetical protein; 93.2 1.5 3.2E-05 41.0 11.7 116 49-176 41-168 (535)
137 PRK09259 putative oxalyl-CoA d 93.0 1.4 3E-05 41.5 11.3 117 48-175 48-174 (569)
138 TIGR03457 sulphoacet_xsc sulfo 92.9 1.6 3.4E-05 41.2 11.6 115 49-175 41-163 (579)
139 cd07038 TPP_PYR_PDC_IPDC_like 92.8 2.4 5.1E-05 33.3 10.8 109 51-170 38-161 (162)
140 PRK05858 hypothetical protein; 92.7 1.6 3.5E-05 40.8 11.4 111 47-168 397-526 (542)
141 PRK12474 hypothetical protein; 92.7 2.1 4.5E-05 39.9 12.0 114 49-174 45-167 (518)
142 TIGR01504 glyox_carbo_lig glyo 92.6 2.1 4.6E-05 40.6 12.1 115 49-175 43-167 (588)
143 PRK08322 acetolactate synthase 92.6 3.3 7.1E-05 38.7 13.2 111 47-168 396-524 (547)
144 TIGR02418 acolac_catab acetola 92.6 2.6 5.6E-05 39.4 12.5 111 47-168 398-526 (539)
145 PRK06276 acetolactate synthase 92.5 1.8 3.8E-05 41.0 11.4 111 47-168 409-539 (586)
146 PRK05778 2-oxoglutarate ferred 92.4 2.8 6.2E-05 36.6 11.7 99 60-168 75-199 (301)
147 PRK06546 pyruvate dehydrogenas 92.4 2.6 5.7E-05 39.8 12.4 111 47-168 398-526 (578)
148 PRK06546 pyruvate dehydrogenas 92.4 1.9 4.2E-05 40.7 11.5 126 37-174 32-164 (578)
149 PRK08266 hypothetical protein; 92.4 2.1 4.5E-05 40.0 11.6 127 36-174 32-170 (542)
150 PRK08527 acetolactate synthase 92.2 2.1 4.5E-05 40.3 11.4 111 47-168 404-534 (563)
151 CHL00099 ilvB acetohydroxyacid 92.1 2.4 5.2E-05 40.1 11.7 115 49-174 53-175 (585)
152 TIGR02720 pyruv_oxi_spxB pyruv 92.1 1.3 2.8E-05 41.8 9.9 128 36-174 27-161 (575)
153 PRK06048 acetolactate synthase 92.1 3 6.6E-05 39.2 12.3 111 47-168 404-534 (561)
154 PRK06965 acetolactate synthase 91.7 3.3 7.2E-05 39.2 12.3 111 47-168 427-558 (587)
155 TIGR00173 menD 2-succinyl-5-en 91.5 1.7 3.7E-05 39.5 9.8 115 49-173 40-167 (432)
156 PRK06882 acetolactate synthase 91.4 3.5 7.5E-05 38.8 12.0 115 42-168 407-542 (574)
157 PRK08273 thiamine pyrophosphat 91.3 1.8 4E-05 41.0 10.1 152 8-175 6-167 (597)
158 cd02012 TPP_TK Thiamine pyroph 91.3 2.4 5.2E-05 35.7 9.9 99 60-169 110-224 (255)
159 TIGR03297 Ppyr-DeCO2ase phosph 91.3 11 0.00023 33.9 15.9 110 47-168 214-332 (361)
160 PRK06112 acetolactate synthase 91.1 2.8 6E-05 39.6 11.0 109 49-168 429-556 (578)
161 PRK06456 acetolactate synthase 91.0 3.1 6.8E-05 39.1 11.3 111 47-168 411-541 (572)
162 PRK07092 benzoylformate decarb 91.0 5.9 0.00013 36.9 13.0 111 47-168 398-526 (530)
163 PRK07064 hypothetical protein; 91.0 4 8.6E-05 38.1 11.8 111 47-168 396-524 (544)
164 TIGR03394 indol_phenyl_DC indo 90.8 11 0.00024 35.3 14.7 152 8-175 3-168 (535)
165 PRK09124 pyruvate dehydrogenas 90.7 7.9 0.00017 36.5 13.7 110 47-168 398-526 (574)
166 TIGR03393 indolpyr_decarb indo 90.7 2.5 5.5E-05 39.5 10.2 116 49-176 41-170 (539)
167 PRK06466 acetolactate synthase 90.4 7.8 0.00017 36.5 13.4 111 47-168 413-544 (574)
168 COG0028 IlvB Thiamine pyrophos 90.4 4.2 9E-05 38.5 11.4 151 9-176 6-165 (550)
169 COG1071 AcoA Pyruvate/2-oxoglu 90.4 1.8 3.9E-05 38.7 8.5 109 52-170 135-259 (358)
170 cd02005 TPP_PDC_IPDC Thiamine 90.2 3.6 7.9E-05 32.9 9.5 145 7-168 7-170 (183)
171 TIGR02720 pyruv_oxi_spxB pyruv 90.2 9.7 0.00021 36.0 13.8 111 47-168 398-528 (575)
172 TIGR03336 IOR_alpha indolepyru 90.1 4.3 9.3E-05 38.6 11.4 114 47-169 395-527 (595)
173 PRK07524 hypothetical protein; 90.0 11 0.00025 35.1 13.9 111 47-168 396-525 (535)
174 cd02007 TPP_DXS Thiamine pyrop 89.9 3.7 8E-05 33.3 9.4 97 59-168 79-186 (195)
175 PRK08273 thiamine pyrophosphat 89.8 10 0.00022 36.0 13.6 117 47-168 405-542 (597)
176 PLN02980 2-oxoglutarate decarb 89.7 9 0.0002 41.0 14.3 150 6-170 302-465 (1655)
177 PRK06154 hypothetical protein; 89.6 11 0.00023 35.6 13.6 111 47-168 421-551 (565)
178 PRK08199 thiamine pyrophosphat 89.6 7.2 0.00016 36.6 12.4 97 61-168 421-534 (557)
179 PRK07710 acetolactate synthase 89.4 8.6 0.00019 36.2 12.8 111 47-168 414-544 (571)
180 PRK09259 putative oxalyl-CoA d 89.4 8.8 0.00019 36.2 12.8 146 7-168 378-542 (569)
181 PRK07449 2-succinyl-5-enolpyru 89.2 2.5 5.4E-05 39.7 9.0 99 59-168 429-545 (568)
182 PRK08327 acetolactate synthase 89.1 4.9 0.00011 37.9 10.9 153 7-175 9-184 (569)
183 TIGR01504 glyox_carbo_lig glyo 88.9 4.1 8.8E-05 38.7 10.3 110 47-168 408-551 (588)
184 PRK08978 acetolactate synthase 88.6 4.4 9.5E-05 37.9 10.2 111 47-168 391-521 (548)
185 TIGR03457 sulphoacet_xsc sulfo 88.5 12 0.00025 35.4 13.0 111 47-168 420-553 (579)
186 PRK07789 acetolactate synthase 88.4 9.9 0.00021 36.2 12.5 111 47-168 437-572 (612)
187 PRK11269 glyoxylate carboligas 88.1 11 0.00023 35.8 12.4 110 47-167 409-551 (591)
188 PRK12474 hypothetical protein; 87.4 6.8 0.00015 36.4 10.6 109 47-167 380-514 (518)
189 PRK07586 hypothetical protein; 87.2 13 0.00027 34.5 12.2 110 47-167 376-510 (514)
190 PRK08979 acetolactate synthase 87.1 8.4 0.00018 36.4 11.1 110 47-167 411-541 (572)
191 COG4231 Indolepyruvate ferredo 87.1 1.7 3.7E-05 41.5 6.2 113 47-168 420-550 (640)
192 PRK06154 hypothetical protein; 87.0 11 0.00024 35.5 11.9 125 37-175 46-179 (565)
193 PRK09107 acetolactate synthase 86.9 5.4 0.00012 37.9 9.7 111 47-168 420-550 (595)
194 CHL00099 ilvB acetohydroxyacid 86.6 7.3 0.00016 36.9 10.4 111 47-168 420-551 (585)
195 PLN02470 acetolactate synthase 86.0 7.2 0.00016 36.9 10.0 111 47-168 416-553 (585)
196 PLN02573 pyruvate decarboxylas 85.8 4.9 0.00011 38.1 8.8 152 7-175 18-185 (578)
197 PRK05444 1-deoxy-D-xylulose-5- 85.3 8.1 0.00018 36.7 10.0 100 60-169 122-239 (580)
198 PRK06725 acetolactate synthase 85.3 6.9 0.00015 37.0 9.5 111 47-168 412-541 (570)
199 PRK08327 acetolactate synthase 84.8 5.2 0.00011 37.7 8.5 113 47-168 420-563 (569)
200 PRK08611 pyruvate oxidase; Pro 84.7 12 0.00025 35.5 10.8 111 47-168 398-526 (576)
201 PRK05899 transketolase; Review 84.4 8.2 0.00018 36.9 9.7 64 105-169 176-245 (624)
202 PRK07525 sulfoacetaldehyde ace 83.5 26 0.00057 33.2 12.6 111 47-168 425-558 (588)
203 TIGR03393 indolpyr_decarb indo 83.3 40 0.00086 31.5 13.8 109 47-168 394-523 (539)
204 PRK07979 acetolactate synthase 83.1 24 0.00052 33.3 12.2 111 47-168 411-544 (574)
205 PRK07418 acetolactate synthase 82.8 7.7 0.00017 37.0 8.8 110 47-168 424-555 (616)
206 KOG0225|consensus 82.3 7.5 0.00016 34.6 7.7 110 55-175 167-290 (394)
207 COG0028 IlvB Thiamine pyrophos 81.2 16 0.00035 34.5 10.2 111 47-168 398-527 (550)
208 PRK12315 1-deoxy-D-xylulose-5- 80.1 22 0.00047 33.9 10.7 110 50-170 109-241 (581)
209 TIGR03181 PDH_E1_alph_x pyruva 79.7 14 0.0003 32.8 8.7 65 105-170 170-244 (341)
210 PRK07282 acetolactate synthase 78.7 35 0.00076 32.2 11.6 110 47-168 408-537 (566)
211 PLN02790 transketolase 78.0 19 0.00041 34.9 9.7 75 86-170 153-236 (654)
212 PLN02573 pyruvate decarboxylas 75.0 31 0.00067 32.7 10.2 110 48-168 419-548 (578)
213 CHL00149 odpA pyruvate dehydro 74.0 23 0.00049 31.4 8.5 65 105-170 183-257 (341)
214 PF00676 E1_dh: Dehydrogenase 73.5 21 0.00045 31.0 8.0 107 52-170 100-223 (300)
215 PF01565 FAD_binding_4: FAD bi 71.7 7.1 0.00015 29.2 4.2 31 141-171 3-33 (139)
216 PLN02980 2-oxoglutarate decarb 71.2 30 0.00064 37.2 9.9 97 61-168 767-885 (1655)
217 PTZ00089 transketolase; Provis 68.1 70 0.0015 31.0 11.0 75 86-170 164-247 (661)
218 TIGR03394 indol_phenyl_DC indo 67.7 75 0.0016 29.8 10.9 140 7-167 361-516 (535)
219 cd02000 TPP_E1_PDC_ADC_BCADC T 67.2 30 0.00065 29.8 7.6 63 105-169 152-225 (293)
220 COG1165 MenD 2-succinyl-6-hydr 64.8 90 0.002 29.7 10.5 142 11-167 15-170 (566)
221 COG4981 Enoyl reductase domain 64.3 16 0.00034 34.8 5.4 60 87-155 160-232 (717)
222 PLN02374 pyruvate dehydrogenas 64.2 31 0.00066 31.8 7.4 65 105-170 249-323 (433)
223 PF07931 CPT: Chloramphenicol 63.4 72 0.0016 25.5 8.6 24 57-80 69-92 (174)
224 PLN02269 Pyruvate dehydrogenas 61.8 65 0.0014 28.9 8.9 65 105-170 186-257 (362)
225 COG3231 Aph Aminoglycoside pho 59.0 27 0.0006 29.7 5.6 79 71-160 41-122 (266)
226 PRK12753 transketolase; Review 55.8 70 0.0015 31.1 8.6 75 86-170 162-244 (663)
227 COG2805 PilT Tfp pilus assembl 55.4 13 0.00028 32.9 3.2 22 5-26 185-206 (353)
228 KOG1185|consensus 54.7 1.3E+02 0.0027 28.5 9.5 113 41-167 415-555 (571)
229 COG3961 Pyruvate decarboxylase 53.5 49 0.0011 31.2 6.8 153 7-176 6-174 (557)
230 TIGR00204 dxs 1-deoxy-D-xylulo 47.8 1E+02 0.0022 29.6 8.3 35 134-169 234-271 (617)
231 PRK12571 1-deoxy-D-xylulose-5- 43.7 1.5E+02 0.0032 28.7 8.7 38 132-170 240-281 (641)
232 KOG0816|consensus 42.8 58 0.0013 26.9 4.9 60 3-69 22-81 (223)
233 cd02808 GltS_FMN Glutamate syn 42.8 1.8E+02 0.0039 26.2 8.6 111 55-170 90-222 (392)
234 TIGR00232 tktlase_bact transke 42.2 2.6E+02 0.0055 27.2 10.1 75 86-170 158-240 (653)
235 KOG1184|consensus 41.1 63 0.0014 30.5 5.4 151 7-174 6-172 (561)
236 TIGR03182 PDH_E1_alph_y pyruva 40.0 1.9E+02 0.004 25.2 8.1 64 105-170 158-232 (315)
237 PRK11230 glycolate oxidase sub 38.0 45 0.00098 31.1 4.1 37 133-170 51-87 (499)
238 COG1152 CdhA CO dehydrogenase/ 36.6 68 0.0015 30.9 5.0 102 11-119 522-645 (772)
239 PRK12436 UDP-N-acetylenolpyruv 34.4 59 0.0013 28.3 4.1 29 141-169 39-67 (305)
240 cd06353 PBP1_BmpA_Med_like Per 34.1 2.8E+02 0.006 23.1 12.3 141 5-163 44-201 (258)
241 COG0277 GlcD FAD/FMN-containin 33.7 71 0.0015 28.7 4.7 37 133-170 27-63 (459)
242 TIGR00596 rad1 DNA repair prot 33.2 2.3E+02 0.005 28.4 8.3 69 85-161 644-726 (814)
243 TIGR00179 murB UDP-N-acetyleno 32.4 71 0.0015 27.5 4.2 29 141-169 15-43 (284)
244 TIGR02634 xylF D-xylose ABC tr 32.3 2E+02 0.0044 24.2 7.0 38 132-169 49-86 (302)
245 PF03808 Glyco_tran_WecB: Glyc 31.8 2.4E+02 0.0053 22.0 6.9 37 8-47 38-74 (172)
246 TIGR00387 glcD glycolate oxida 31.6 44 0.00096 30.2 2.9 29 142-170 1-29 (413)
247 COG0299 PurN Folate-dependent 30.4 90 0.0019 25.7 4.2 46 4-56 64-110 (200)
248 PRK14652 UDP-N-acetylenolpyruv 30.2 77 0.0017 27.6 4.1 29 141-169 38-66 (302)
249 PRK13905 murB UDP-N-acetylenol 29.9 77 0.0017 27.3 4.1 30 141-170 33-62 (298)
250 PF12780 AAA_8: P-loop contain 29.8 2.1E+02 0.0045 24.4 6.6 57 105-168 29-94 (268)
251 PF02367 UPF0079: Uncharacteri 29.7 85 0.0018 23.6 3.7 38 6-46 3-40 (123)
252 PRK10646 ADP-binding protein; 28.9 87 0.0019 24.5 3.8 38 6-46 16-53 (153)
253 KOG1395|consensus 28.7 4.5E+02 0.0098 24.0 8.5 88 7-95 127-219 (477)
254 PRK13906 murB UDP-N-acetylenol 26.7 97 0.0021 27.0 4.1 29 141-169 39-67 (307)
255 COG0802 Predicted ATPase or ki 25.8 1.3E+02 0.0028 23.6 4.2 38 6-46 13-50 (149)
256 PF01990 ATP-synt_F: ATP synth 24.2 1.2E+02 0.0025 21.3 3.5 37 138-174 16-53 (95)
257 cd01539 PBP1_GGBP Periplasmic 23.4 4.1E+02 0.009 22.2 7.4 40 130-169 50-89 (303)
258 PRK15408 autoinducer 2-binding 23.3 4.4E+02 0.0096 22.9 7.7 41 130-170 73-113 (336)
259 PRK13030 2-oxoacid ferredoxin 23.2 2.9E+02 0.0064 28.9 7.2 112 48-168 461-599 (1159)
260 PLN02805 D-lactate dehydrogena 21.4 1.3E+02 0.0028 28.6 4.1 34 136-170 132-165 (555)
261 PRK12754 transketolase; Review 21.3 7.7E+02 0.017 24.1 11.1 65 105-170 172-244 (663)
262 PRK14649 UDP-N-acetylenolpyruv 21.2 1.5E+02 0.0032 25.7 4.1 29 141-169 23-51 (295)
263 PRK11183 D-lactate dehydrogena 21.1 1.3E+02 0.0029 28.7 4.0 31 140-170 40-70 (564)
264 PRK13903 murB UDP-N-acetylenol 20.8 1.5E+02 0.0033 26.6 4.2 29 141-169 35-63 (363)
265 COG2159 Predicted metal-depend 20.8 2.2E+02 0.0048 24.6 5.1 44 105-148 155-201 (293)
266 PF10569 Thiol-ester_cl: Alpha 20.6 70 0.0015 18.1 1.3 13 53-65 10-22 (31)
267 PRK14337 (dimethylallyl)adenos 20.2 4.4E+02 0.0096 24.0 7.3 78 78-164 45-123 (446)
No 1
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=5.3e-63 Score=418.52 Aligned_cols=203 Identities=53% Similarity=0.857 Sum_probs=196.9
Q ss_pred CcHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEech
Q psy10429 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMT 80 (207)
Q Consensus 1 ~~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~ 80 (207)
++|++|++++|.+.|++|++++++|+|++..||+|++|++|.++||++|++||||+|.+++|+|.|+|+.|+||++++||
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiqf 81 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQF 81 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc
Q psy10429 81 FNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR 160 (207)
Q Consensus 81 ~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~ 160 (207)
.+|++.|+|||.|+++|++|||||+.++|+++|++.|+..+++.||||+.++++.++||+||++||+|+|+++||++|++
T Consensus 82 ~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKGLL~aAIr 161 (324)
T COG0022 82 ADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAAIR 161 (324)
T ss_pred cchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCCchhhccCCHHHHHhcCCCceEEecCChHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECccccc-ccCCCCcccCCCCccccCCceEEEEeCCceec
Q psy10429 161 DPDPVVFLENELLYG-VQYPMGDEALSKDFVLPIGKAKVEKQVIMKTL 207 (207)
Q Consensus 161 ~~~P~~i~~~k~l~~-~~~~~~~~~~~~~~~~~~Gka~v~r~G~dvti 207 (207)
+++||+|+|||.||+ .+++ +++++|.+|+|||+|+|+|+||||
T Consensus 162 d~dPViflE~k~lY~~~~~e----VP~~~Y~iPlGkA~i~reG~DvTi 205 (324)
T COG0022 162 DPDPVIFLEHKRLYRSFKGE----VPEEDYTIPLGKAKIVREGSDVTI 205 (324)
T ss_pred CCCCEEEEecHHHhcccccC----CCCCCccccccceeeEecCCceEE
Confidence 999999999999998 4444 457899999999999999999997
No 2
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=1.4e-55 Score=399.83 Aligned_cols=204 Identities=66% Similarity=1.096 Sum_probs=192.0
Q ss_pred CcHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEech
Q psy10429 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMT 80 (207)
Q Consensus 1 ~~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~ 80 (207)
+++|++++++|.+++++|++++++++|++.++|+|+++++|.++|||+||||+||+||+|+|+|+|||++|+|||+++++
T Consensus 142 ~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~~~ 221 (464)
T PRK11892 142 MTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEFMT 221 (464)
T ss_pred hHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEEeh
Confidence 46999999999999999999999999999888888889999999988999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc
Q psy10429 81 FNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR 160 (207)
Q Consensus 81 ~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~ 160 (207)
.||++||||||+|++++++||+||++++||+|+|++|+..+.|+|||++|+++||+||||+|++|+|+.|++++++++++
T Consensus 222 ~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~ai~ 301 (464)
T PRK11892 222 FNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKAAIR 301 (464)
T ss_pred HHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCCccccCHHHHHhhCCCCEEEEeCCHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999988877778999999999999999999999999999999999999
Q ss_pred CCCcEEEEECcccccccCCCCcccCCCCccccCCceEEEEeCCceec
Q psy10429 161 DPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQVIMKTL 207 (207)
Q Consensus 161 ~~~P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka~v~r~G~dvti 207 (207)
+++|+||++++.+|+++.+++. .+++.+|+||++++|+|+|+||
T Consensus 302 ~~~Pv~ile~~~ry~~~~~vp~---~~~~~~~~Gka~v~r~G~DvtI 345 (464)
T PRK11892 302 DPNPVIFLENEILYGQSFDVPK---LDDFVLPIGKARIHREGKDVTI 345 (464)
T ss_pred CCCcEEEEechhhcCCCCCCCC---cCCccccCceEEEEEcCCCEEE
Confidence 9999999999999987534331 1468899999999999999996
No 3
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=3.9e-55 Score=382.70 Aligned_cols=203 Identities=46% Similarity=0.795 Sum_probs=186.9
Q ss_pred CcHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEech
Q psy10429 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMT 80 (207)
Q Consensus 1 ~~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~ 80 (207)
++||++++++|.+++++||+++++++|++..+|+++.+++|+++||++||||+||+||+|+|+|+|||++|++||+++++
T Consensus 4 ~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~~ 83 (327)
T CHL00144 4 VFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGMN 83 (327)
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEeeh
Confidence 47999999999999999999999999998777878889999999953399999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc
Q psy10429 81 FNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR 160 (207)
Q Consensus 81 ~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~ 160 (207)
+||++||||||++++++++||+||+.++||+++++++...+.|++|||..+++||+||||+|++|+|+.|++++++++++
T Consensus 84 ~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~~~ea~~~~iPgl~V~~Psd~~d~~~~l~~a~~ 163 (327)
T CHL00144 84 MGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQIVACSTPYNAKGLLKSAIR 163 (327)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCccccccHHHHHhcCCCCEEEEeCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988554445677787888999999999999999999999999999999
Q ss_pred CCCcEEEEECcccccccCCCCcccCCCCccccCCceEEEEeCCceec
Q psy10429 161 DPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQVIMKTL 207 (207)
Q Consensus 161 ~~~P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka~v~r~G~dvti 207 (207)
.++|+||||||++|+.+. .++++++.+++||++++|+|+|+||
T Consensus 164 ~~~Pv~ire~~~l~~~~~----~v~~~~~~~~~Gk~~v~~~G~diti 206 (327)
T CHL00144 164 SNNPVIFFEHVLLYNLKE----EIPDNEYLLPLEKAEVVRPGNDITI 206 (327)
T ss_pred CCCcEEEEEcHHhcCCCC----CCCCCCccccCCeeEEEEcCCCEEE
Confidence 999999999999998652 2445678899999999999999986
No 4
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=2.2e-54 Score=378.14 Aligned_cols=203 Identities=65% Similarity=1.063 Sum_probs=189.6
Q ss_pred CcHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEech
Q psy10429 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMT 80 (207)
Q Consensus 1 ~~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~ 80 (207)
+++|++++++|.+++++||+++++++|++..+|+|+++++|+++|||+||||+||+||+|+|+|+|||++|++||+++++
T Consensus 4 ~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~~ 83 (327)
T PRK09212 4 LTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFMT 83 (327)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEeeh
Confidence 47999999999999999999999999998888999999999999988999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc
Q psy10429 81 FNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR 160 (207)
Q Consensus 81 ~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~ 160 (207)
+||++||||||++++++++||+|++.++|+++++++|...+.|++|||.++++||+||||+|++|+|+.|++++++++++
T Consensus 84 ~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~~ea~~r~iP~l~V~~P~d~~e~~~~l~~a~~ 163 (327)
T PRK09212 84 FNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCYAAWYSHIPGLKVVAPYFAADCKGLLKTAIR 163 (327)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccCHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999877777788888888899999999999999999999999999999
Q ss_pred CCCcEEEEECcccccccCCCCcccCCCCccccCCceEEEEeCCceec
Q psy10429 161 DPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQVIMKTL 207 (207)
Q Consensus 161 ~~~P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka~v~r~G~dvti 207 (207)
.++|+|||+++.+|++.. .++++++.+++||++++|+|+|+||
T Consensus 164 ~~~Pv~i~~~~~~~~~~~----~~~~~~~~~~~Gk~~vl~~G~di~i 206 (327)
T PRK09212 164 DPNPVIFLENEILYGHSH----EVPEEEESIPIGKAAILREGSDVTI 206 (327)
T ss_pred CCCcEEEEEchhhcCCCC----CCCCCCccccCCeeEEEEeCCCEEE
Confidence 999999999998887432 2345567899999999999999986
No 5
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=2.4e-54 Score=381.37 Aligned_cols=207 Identities=74% Similarity=1.185 Sum_probs=190.7
Q ss_pred CcHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEech
Q psy10429 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMT 80 (207)
Q Consensus 1 ~~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~ 80 (207)
+++|++++++|.+++++||+++++++|++.++++++.+++|.++|+|+||||+||+||+|+|+|+|||++|++||+++++
T Consensus 27 ~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~~~ 106 (356)
T PLN02683 27 MTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFMT 106 (356)
T ss_pred cHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEEeh
Confidence 47999999999999999999999999998888888888999999988999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc
Q psy10429 81 FNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR 160 (207)
Q Consensus 81 ~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~ 160 (207)
.||++||||||++++++++|||||+.++||++++++|.++|.|++|++.++++||+||||+|++|+|++|++++++++++
T Consensus 107 ~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~~~a~lr~iPnl~V~~Pad~~e~~~~l~~a~~ 186 (356)
T PLN02683 107 FNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCFAAWYSSVPGLKVLAPYSSEDARGLLKAAIR 186 (356)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccCHHHHHhcCCCCEEEEeCCHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999988888788888888999999999999999999999999999999
Q ss_pred CCCcEEEEECcccccccCCCCcccCCCCccccCCceEEEEeCCceec
Q psy10429 161 DPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQVIMKTL 207 (207)
Q Consensus 161 ~~~P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka~v~r~G~dvti 207 (207)
+++|+|||++|.+++++.++.....++++.+++||++++|+|+|+||
T Consensus 187 ~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtI 233 (356)
T PLN02683 187 DPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTI 233 (356)
T ss_pred CCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEE
Confidence 99999999999999765443322223467889999999999999986
No 6
>KOG0524|consensus
Probab=100.00 E-value=5.6e-54 Score=357.27 Aligned_cols=207 Identities=74% Similarity=1.182 Sum_probs=200.4
Q ss_pred CcHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEech
Q psy10429 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMT 80 (207)
Q Consensus 1 ~~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~ 80 (207)
||+|+|++++++++|.+|++++++|+|++.++|+|+++++|.++||+.|++||||+|.+..|+|.|.|+.|+|||++.+.
T Consensus 35 mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~efMt 114 (359)
T KOG0524|consen 35 MTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICEFMT 114 (359)
T ss_pred eeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhhhhc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc
Q psy10429 81 FNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR 160 (207)
Q Consensus 81 ~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~ 160 (207)
..|.+.|+|||.|++++.+|||||++++|+++|||+|...|.+.+|||++.+|+.++||+||++|.+++|+++||++|++
T Consensus 115 fnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPnG~~~gv~AqHSQ~f~~wy~siPGlkvvapysaedakGLlKaAIR 194 (359)
T KOG0524|consen 115 FNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPNGAAAGVAAQHSQDFASWYGSIPGLKVVAPYSAEDAKGLLKAAIR 194 (359)
T ss_pred chhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCCCcccchhhhhhhhhHHHhccCCCceEeccCChhhhhhHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECcccccccCCCCcccCCCCccccCCceEEEEeCCceec
Q psy10429 161 DPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQVIMKTL 207 (207)
Q Consensus 161 ~~~P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka~v~r~G~dvti 207 (207)
+++||+++|+.-||....+.++...+++|.+|+|||+|.|+|+||||
T Consensus 195 d~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier~G~~iTi 241 (359)
T KOG0524|consen 195 DENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIEREGTHITI 241 (359)
T ss_pred CCCCeEEEechhhcCCCccCChhhcCcceeeeccceeeeecCCceEE
Confidence 99999999999999887777665556789999999999999999997
No 7
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-52 Score=368.72 Aligned_cols=204 Identities=59% Similarity=0.936 Sum_probs=187.5
Q ss_pred CcHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEech
Q psy10429 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMT 80 (207)
Q Consensus 1 ~~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~ 80 (207)
++||++++++|.+++++||+++++++|++..|++++.+++|+++|||+||+|+||+||+|+|+|+|||++|++||+++++
T Consensus 35 ~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~~~f 114 (355)
T PTZ00182 35 MNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAEFMF 114 (355)
T ss_pred hHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEEech
Confidence 46999999999999999999999999998777888888999999988999999999999999999999999999999977
Q ss_pred hhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc
Q psy10429 81 FNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR 160 (207)
Q Consensus 81 ~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~ 160 (207)
.+|++||||||++++++++||+||++++|++++++.|...+.|++|||.++++||+||||+|++|+|+.|++++++++++
T Consensus 115 a~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~~ea~lr~iPn~~V~~Psd~~e~~~~l~~a~~ 194 (355)
T PTZ00182 115 ADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQSFEAYFAHVPGLKVVAPSDPEDAKGLLKAAIR 194 (355)
T ss_pred hhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccchHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh
Confidence 78899999999999999999999999999999987666656788888888999999999999999999999999999999
Q ss_pred CCCcEEEEECcccccccCCCCcccCCCCccccCCceEEEEeCCceec
Q psy10429 161 DPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQVIMKTL 207 (207)
Q Consensus 161 ~~~P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka~v~r~G~dvti 207 (207)
.++|+||++||++++.+.+ .++++++.+++||++++|+|+|++|
T Consensus 195 ~~~P~~i~~p~~l~r~~~~---~~~~~~~~~~~Gk~~vl~~G~di~I 238 (355)
T PTZ00182 195 DPNPVVFFEPKLLYRESVE---VVPEADYTLPLGKAKVVREGKDVTI 238 (355)
T ss_pred CCCcEEEEeehHHhCCCCC---CCCcccccccCCcceEecCCCCEEE
Confidence 9999999999999976433 2334568899999999999999986
No 8
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-49 Score=333.27 Aligned_cols=187 Identities=20% Similarity=0.262 Sum_probs=169.1
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEechh
Q psy10429 2 TVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTF 81 (207)
Q Consensus 2 ~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~ 81 (207)
++|++|+++|.++.++|+++|++.+|+..++. +..|.++| |+||+|+||+||+|+|+|+|||++|++||+.+|++
T Consensus 8 ~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~----~~~f~~~f-PdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~tfa~ 82 (312)
T COG3958 8 SLRKVYGETLAELGRKNSDIVVLDADLSSSTK----TGYFAKEF-PDRFFNVGIAEQDMVGTAAGLALAGKKPFVSTFAA 82 (312)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecccccccc----hhHHHHhC-chhheecchHHHHHHHHHHHHHhcCCCceeechHH
Confidence 68999999999999999999999999975543 47899999 69999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC--CCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHH
Q psy10429 82 NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG--VAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAA 158 (207)
Q Consensus 82 ~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g--~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a 158 (207)
|.+.||||||||+++ +.++||.+++.+ |.+.| +++||+.+|+++||.+|||+|++|+|+.+.+.+++++
T Consensus 83 F~s~Ra~EQir~~ia--------y~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~ 154 (312)
T COG3958 83 FLSRRAWEQIRNSIA--------YNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQI 154 (312)
T ss_pred HHHHHHHHHHHHHhh--------hccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHHHHH
Confidence 988899999999999 689999999987 55666 4679999999999999999999999999999999999
Q ss_pred HcCCCcEEEEECcccccccCCCCcccCCCCccccCCceEEEEeCCceec
Q psy10429 159 IRDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQVIMKTL 207 (207)
Q Consensus 159 ~~~~~P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka~v~r~G~dvti 207 (207)
.+.++|+|+|.. |. ++|..++..+|.|++||++++|+|+|+||
T Consensus 155 ~~~~GP~Y~Rl~----R~--~~p~~~~~~~~~F~iGka~vLrdG~D~ti 197 (312)
T COG3958 155 ADYKGPVYMRLG----RG--KVPVVVDEGGYTFEIGKANVLRDGSDLTI 197 (312)
T ss_pred HhcCCCEEEEec----CC--CCCceecCCCceEeccceeEeecCCceEE
Confidence 999999999954 32 34444544569999999999999999986
No 9
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=100.00 E-value=1.2e-48 Score=312.11 Aligned_cols=167 Identities=59% Similarity=0.979 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEechhhHH
Q psy10429 5 DALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTFNFS 84 (207)
Q Consensus 5 ~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~~~~ 84 (207)
++++++|.+++++||+++++++|++..+|++..+++|+++||.+||+|+||+||+++|+|+|||++|++||+++++..|+
T Consensus 1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~Fl 80 (167)
T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFA 80 (167)
T ss_pred CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHHH
Confidence 47899999999999999999999987788888889999999533999999999999999999999999999996555677
Q ss_pred HHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCc
Q psy10429 85 MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDP 164 (207)
Q Consensus 85 ~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P 164 (207)
.|||||||+++++++|+|||++++||+++++.|+..+.|++|+++++++||+||||+|++|+|+.|++++++++++.++|
T Consensus 81 ~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~~~P 160 (167)
T cd07036 81 LPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDDDP 160 (167)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCc
Confidence 89999999999999999999999999999987766556777999999999999999999999999999999999999999
Q ss_pred EEEEECc
Q psy10429 165 VVFLENE 171 (207)
Q Consensus 165 ~~i~~~k 171 (207)
++++|||
T Consensus 161 ~~~~e~k 167 (167)
T cd07036 161 VIFLEHK 167 (167)
T ss_pred EEEEecC
Confidence 9999986
No 10
>KOG0525|consensus
Probab=100.00 E-value=1.8e-49 Score=326.68 Aligned_cols=203 Identities=35% Similarity=0.615 Sum_probs=194.6
Q ss_pred CcHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEech
Q psy10429 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMT 80 (207)
Q Consensus 1 ~~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~ 80 (207)
|++-++++++|+-.+++||+.+++|+|++ .||+|+++.+|+++||.+|+||+|++||+++|.++|+|..|-+.|+++|+
T Consensus 41 mnl~qsvn~al~ial~tdp~a~vfgedv~-fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaeiqf 119 (362)
T KOG0525|consen 41 MNLYQSVNQALHIALETDPRAVVFGEDVA-FGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEIQF 119 (362)
T ss_pred chHHHHHHHHHHHHhhcCCceEEeccccc-cceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEEEee
Confidence 45678999999999999999999999997 89999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhccCCccC-CEEEEeCCCCCCCCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHH
Q psy10429 81 FNFSMQAIDHIINSAAKTFYMSAGTVNV-PIVFRGPNGAASGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAI 159 (207)
Q Consensus 81 ~~~~~ra~dqi~~~~a~~~~~~~~~~~~-pvvi~~~~G~~~g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~ 159 (207)
.+|++.|||||.|+++|.+||||.+++| .+.||.++|....++.+|||+.++.+.+.||+||+.|.+|.++++++-+++
T Consensus 120 adyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yhsqspeaff~h~pgikvviprsp~qakglllsci 199 (362)
T KOG0525|consen 120 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQSPEAFFCHVPGIKVVIPRSPRQAKGLLLSCI 199 (362)
T ss_pred ccccchhHHHHHHHHHhheeccCCccccCceEEeccccccccccccccCCchhheecCCCceEEecCCcchhhceeeeec
Confidence 9999999999999999999999999999 599999999998899999999999999999999999999999999999999
Q ss_pred cCCCcEEEEECcccccccCCCCcccCCCCccccCCceEEEEeCCceec
Q psy10429 160 RDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQVIMKTL 207 (207)
Q Consensus 160 ~~~~P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka~v~r~G~dvti 207 (207)
++++||+++|||+|||...+ .++..||.+|+++|+++|+|+|+|+
T Consensus 200 rdpnp~iffepk~lyr~a~e---dvp~~dy~iplsqaevireg~ditl 244 (362)
T KOG0525|consen 200 RDPNPCIFFEPKILYRQAVE---DVPEGDYMIPLSQAEVIREGSDITL 244 (362)
T ss_pred cCCCceEEechHHHHHHhhh---hCCCCCccccccHHHHhhcCCceEE
Confidence 99999999999999987533 5778999999999999999999996
No 11
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=3.6e-43 Score=328.94 Aligned_cols=189 Identities=16% Similarity=0.241 Sum_probs=161.4
Q ss_pred CcHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEech
Q psy10429 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMT 80 (207)
Q Consensus 1 ~~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~ 80 (207)
++|+++|+++|.+++++|++++++++|+.. ++ + +.+|+++| |+||||+|||||+||++|+|||++|++||+++++
T Consensus 381 ~s~~~~f~~aL~~la~~D~~Iv~Itadm~~--gt-g-l~~f~~~f-PdRffDvGIAEQhaVt~AAGLA~~G~kPvv~iys 455 (701)
T PLN02225 381 RTYSDCFVEALVMEAEKDRDIVVVHAGMEM--DA-S-LITFQERF-PDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIPS 455 (701)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCccC--cc-c-HHHHHHHc-cccccccCccHHHHHHHHHHHHHCCCEEEEEeeh
Confidence 379999999999999999999999999852 33 2 58999999 7999999999999999999999999999999997
Q ss_pred hhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCC--CCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHH
Q psy10429 81 FNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASG--VAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAA 158 (207)
Q Consensus 81 ~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g--~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a 158 (207)
.|++||||||++++| ++++||++++..++..| +.+||+.+|+++||+||||+|++|+|+.|++.|+++|
T Consensus 456 -tFlqRAyDQI~~Dva--------l~~lpV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A 526 (701)
T PLN02225 456 -AFLQRAYDQVVHDVD--------RQRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATA 526 (701)
T ss_pred -hHHHHHHHHHHHHHH--------hhcCCceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 668899999999999 67888888876533333 3468889999999999999999999999999999998
Q ss_pred H-cCCCcEEEEECcccccccCCCCcccCCCCccccCCceEEEEeCCceec
Q psy10429 159 I-RDPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQVIMKTL 207 (207)
Q Consensus 159 ~-~~~~P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka~v~r~G~dvti 207 (207)
+ +.++|+|||.||..+... + ...++++.+++||++|+|+|+||||
T Consensus 527 ~~~~~gPv~IR~pRg~~~~~---~-~~~~~~~~~~iGK~~vlreG~dvtI 572 (701)
T PLN02225 527 AYVTDRPVCFRFPRGSIVNM---N-YLVPTGLPIEIGRGRVLVEGQDVAL 572 (701)
T ss_pred HhcCCCCEEEEecccccCCC---C-cCCCCCccccCcceEEEEeCCCEEE
Confidence 8 457999999997644221 0 0113357899999999999999986
No 12
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=7.8e-42 Score=320.31 Aligned_cols=187 Identities=17% Similarity=0.246 Sum_probs=161.2
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEechh
Q psy10429 2 TVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTF 81 (207)
Q Consensus 2 ~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~ 81 (207)
+++++|+++|.+++++|++++++++|+...+ + +++|+++| |+||||+|||||+|+++|+|||++|++||+++++
T Consensus 311 ~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~---~-~~~f~~~f-P~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~~a- 384 (617)
T TIGR00204 311 SYSKIFSDTLCELAKKDNKIVGITPAMPEGS---G-LDKFSRKF-PDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIYS- 384 (617)
T ss_pred cHHHHHHHHHHHHHhhCcCEEEEECCccCCc---C-hHHHHHHC-ccccccCCccHHHHHHHHHHHHHCCCEEEEEecH-
Confidence 6899999999999999999999999974322 2 48999999 7999999999999999999999999999999966
Q ss_pred hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC-CCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHH
Q psy10429 82 NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG-VAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAI 159 (207)
Q Consensus 82 ~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g-~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~ 159 (207)
.|++||||||++++| ++++||++++.. |...+ +.+||+.+|+++||+||||+|++|+|+.|+++++++|+
T Consensus 385 ~Fl~ra~dQi~~~~a--------~~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~ 456 (617)
T TIGR00204 385 TFLQRAYDQVVHDVC--------IQKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGY 456 (617)
T ss_pred HHHHHHHHHHHHHHH--------hcCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHH
Confidence 667899999999999 679999999985 44433 34577778889999999999999999999999999999
Q ss_pred cCC-CcEEEEECcccccccCCCCcccCCCCccccCCceEEEEeCCceec
Q psy10429 160 RDP-DPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQVIMKTL 207 (207)
Q Consensus 160 ~~~-~P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka~v~r~G~dvti 207 (207)
+.+ +|+|||++|..+... ...+.++.+++||++++|+|+|+||
T Consensus 457 ~~~~~Pv~ir~~r~~~~~~-----~~~~~~~~~~~Gk~~vlr~G~dvtI 500 (617)
T TIGR00204 457 HYDDGPIAVRYPRGNAVGV-----ELTPEPEKLPIGKSEVLRKGEKILI 500 (617)
T ss_pred hCCCCCEEEEEccCCcCCc-----ccCCccccccCCceEEEEcCCCEEE
Confidence 975 999999997655211 1112357899999999999999986
No 13
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=9.4e-42 Score=318.49 Aligned_cols=190 Identities=17% Similarity=0.246 Sum_probs=161.0
Q ss_pred CcHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEech
Q psy10429 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMT 80 (207)
Q Consensus 1 ~~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~ 80 (207)
++++++|+++|.+++++||+++++++|++ +++. +..|+++| |+||||+|||||+|+|+|+|||++|++||+++|+
T Consensus 357 ~sy~~af~~aL~e~a~~D~~Iv~l~adm~--ggt~--~~~f~~~f-PdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~fs 431 (641)
T PLN02234 357 QSYTSCFVEALIAEAEADKDIVAIHAAMG--GGTM--LNLFESRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIYS 431 (641)
T ss_pred CCHHHHHHHHHHHHHHHCcCEEEEECCCC--CCcc--hHHHHHHc-cccccCCCcCHHHHHHHHHHHHHCCCeEEEEehH
Confidence 36899999999999999999999999984 3442 47899999 7999999999999999999999999999999966
Q ss_pred hhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC-CCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHH
Q psy10429 81 FNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG-VAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAA 158 (207)
Q Consensus 81 ~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g-~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a 158 (207)
+|++||||||+++++ ++++||++++.. |...+ +.+||+.+|.++||+||||+|++|+|+.|+++++++|
T Consensus 432 -~Fl~RA~DQI~~dva--------~~~lpV~~v~~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a 502 (641)
T PLN02234 432 -SFMQRAYDQVVHDVD--------LQKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATA 502 (641)
T ss_pred -HHHHHHHHHHHHHHh--------hcCCCEEEEEeCCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 668899999999999 789999999843 54433 3457777899999999999999999999999999998
Q ss_pred HcC-CCcEEEEECcccccccCCCCcccCCCCccccCCceEEEEeCCceec
Q psy10429 159 IRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQVIMKTL 207 (207)
Q Consensus 159 ~~~-~~P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka~v~r~G~dvti 207 (207)
+.. ++|+|||++|..+... ..+. ..+++.+++||++++|+|+||||
T Consensus 503 ~~~~~~Pv~ir~~R~~~~~~-~~~~--~~~~~~~~iGk~~vlreG~dvtI 549 (641)
T PLN02234 503 AAIDDRPSCFRYHRGNGIGV-SLPP--GNKGVPLQIGRGRILRDGERVAL 549 (641)
T ss_pred HhCCCCCEEEEeeccccccc-ccCC--CCccccccCceEEEEEeCCCEEE
Confidence 764 6999999998765221 1111 01245789999999999999986
No 14
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=2e-41 Score=267.69 Aligned_cols=152 Identities=25% Similarity=0.343 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEechhhHH
Q psy10429 5 DALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTFNFS 84 (207)
Q Consensus 5 ~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~~~~ 84 (207)
+++.++|.+++++||+++++++|++.++ .+++|+++| |+||+|+||+|++|+|+|+|+|+.|++||++++ .+|+
T Consensus 1 ~~~~~~l~~~~~~~~~~v~~~~Dl~~~~----~~~~~~~~~-p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~-~~f~ 74 (156)
T cd07033 1 KAFGEALLELAKKDPRIVALSADLGGST----GLDKFAKKF-PDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTF-SFFL 74 (156)
T ss_pred ChHHHHHHHHHhhCCCEEEEECCCCCCC----CcHHHHHhC-CCCeEEeChhHHHHHHHHHHHHHCCCeEEEEEC-HHHH
Confidence 3789999999999999999999997432 368999999 799999999999999999999999999999999 7999
Q ss_pred HHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCC-C--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcC
Q psy10429 85 MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAA-S--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRD 161 (207)
Q Consensus 85 ~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~-~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~ 161 (207)
.||+||||++++ ++++||++++++++. . .+.+||+++++++++++||++|++|+|++|+++++++|+++
T Consensus 75 ~ra~dqi~~~~a--------~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~ 146 (156)
T cd07033 75 QRAYDQIRHDVA--------LQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEY 146 (156)
T ss_pred HHHHHHHHHHHh--------ccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhC
Confidence 999999999999 678999999986543 3 34568899999999999999999999999999999999999
Q ss_pred CCcEEEEEC
Q psy10429 162 PDPVVFLEN 170 (207)
Q Consensus 162 ~~P~~i~~~ 170 (207)
++|+|||.+
T Consensus 147 ~~P~~irl~ 155 (156)
T cd07033 147 DGPVYIRLP 155 (156)
T ss_pred CCCEEEEee
Confidence 999999975
No 15
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=3.7e-41 Score=316.62 Aligned_cols=189 Identities=17% Similarity=0.243 Sum_probs=159.7
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEechh
Q psy10429 2 TVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTF 81 (207)
Q Consensus 2 ~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~ 81 (207)
++.++|+++|.+++++||+++++++|++ +.+++ .+|+++| |+||||+|||||+|+++|+|||++|++||+++|+
T Consensus 357 ~~s~a~~~aL~~~a~~d~~vv~ita~m~---g~~gl-~~f~~~f-P~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~fs- 430 (677)
T PLN02582 357 SYTTYFAEALIAEAEVDKDVVAIHAAMG---GGTGL-NLFARRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYS- 430 (677)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCC---Cccch-HHHHHHc-CccccccCcCHHHHHHHHHHHHHCCCeEEEEecH-
Confidence 5789999999999999999999999864 33455 6899999 6999999999999999999999999999999977
Q ss_pred hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC-CCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHH
Q psy10429 82 NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG-VAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAI 159 (207)
Q Consensus 82 ~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g-~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~ 159 (207)
.|++||||||++++| ++++||++++.. |..+. +.+||+.+|.++||+||||+|++|+|++|+++++++|+
T Consensus 431 ~Fl~RA~DQI~~dva--------l~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~al 502 (677)
T PLN02582 431 SFLQRGYDQVVHDVD--------LQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAA 502 (677)
T ss_pred HHHHHHHHHHHHHHH--------hcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH
Confidence 567899999999999 789999999875 44333 35677789999999999999999999999999999999
Q ss_pred cC-CCcEEEEECcccccccCCCCcccCCCCccccCCceEEEEeCCceec
Q psy10429 160 RD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQVIMKTL 207 (207)
Q Consensus 160 ~~-~~P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka~v~r~G~dvti 207 (207)
+. ++|+|||.+|.... ....+. .+.++.+++||++++|+|+|+||
T Consensus 503 ~~~~gPv~IR~pr~~~~-~~~~~~--~~~~~~~~iGk~~vlr~G~dvtI 548 (677)
T PLN02582 503 AIDDRPSCFRYPRGNGI-GVQLPP--NNKGIPIEVGKGRILLEGERVAL 548 (677)
T ss_pred hCCCCCEEEEEecCCCC-CcccCC--cccccccccCceEEEEeCCCEEE
Confidence 75 69999998865311 001110 01235689999999999999986
No 16
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=7.7e-41 Score=312.17 Aligned_cols=186 Identities=20% Similarity=0.271 Sum_probs=160.7
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEechh
Q psy10429 2 TVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTF 81 (207)
Q Consensus 2 ~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~ 81 (207)
+||+++.++|.+++++||+++++++|+... + ++ .+|+++| |+||+|+||+||+|+|+|+|||++|++||+++|+
T Consensus 280 ~~~~~~~~~L~~~~~~~~~vv~~~adl~~~--~-~~-~~f~~~~-p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~~~f~- 353 (580)
T PRK05444 280 SYTKVFGETLCELAEKDPKIVAITAAMPEG--T-GL-VKFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVVAIYS- 353 (580)
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEECCcCCC--C-CH-HHHHHHh-hhhccCCChHHHHHHHHHHHHHHCCCeeEEEeeH-
Confidence 689999999999999999999999998532 2 33 5699999 6999999999999999999999999999999977
Q ss_pred hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC-CCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHH
Q psy10429 82 NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG-VAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAI 159 (207)
Q Consensus 82 ~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g-~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~ 159 (207)
.|+.||+|||++++| ++++||+++++. |..+. +.+||+.+|+++||+||||+|++|+|+.|+++++++|+
T Consensus 354 ~F~~ra~dQi~~~~a--------~~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~ 425 (580)
T PRK05444 354 TFLQRAYDQVIHDVA--------LQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTAL 425 (580)
T ss_pred HHHHHHHHHHHHHhh--------hcCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH
Confidence 556799999999999 679999999974 54433 34577778899999999999999999999999999999
Q ss_pred cC-CCcEEEEECcccccccCCCCcccCCCCccccCCceEEEEeCCceec
Q psy10429 160 RD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQVIMKTL 207 (207)
Q Consensus 160 ~~-~~P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka~v~r~G~dvti 207 (207)
+. ++|+|||++|..+.. ..+++++.+++||++++|+|+|+||
T Consensus 426 ~~~~~P~~ir~~r~~~~~------~~~~~~~~~~~Gk~~vl~~G~dvtI 468 (580)
T PRK05444 426 AYDDGPIAIRYPRGNGVG------VELPELEPLPIGKGEVLREGEDVAI 468 (580)
T ss_pred hCCCCcEEEEecCCCCCC------CCCCCcccccCCceEEEEcCCCEEE
Confidence 76 899999998765521 1112357799999999999999986
No 17
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=9.6e-41 Score=314.01 Aligned_cols=187 Identities=23% Similarity=0.349 Sum_probs=161.0
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEechh
Q psy10429 2 TVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTF 81 (207)
Q Consensus 2 ~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~ 81 (207)
+|+++|.++|.+++++||+++++++|+.. ++ ++ ++|+++| |+||+|+||+||+|+++|+|||++|++||+++|+
T Consensus 320 ~~~~~f~~~L~~la~~d~~iv~isadl~~--~~-~~-~~f~~~~-p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~~f~- 393 (641)
T PRK12571 320 SYTSVFGEELTKEAAEDSDIVAITAAMPL--GT-GL-DKLQKRF-PNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAVYS- 393 (641)
T ss_pred hHHHHHHHHHHHHHhhCCCEEEEeCCccC--CC-Ch-HHHHHhC-CCcccccCccHHHHHHHHHHHHHCCCEEEEEehH-
Confidence 58999999999999999999999999853 33 33 8899999 6999999999999999999999999999999976
Q ss_pred hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeC-CCCCCC-CCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHH
Q psy10429 82 NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP-NGAASG-VAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAI 159 (207)
Q Consensus 82 ~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~-~G~~~g-~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~ 159 (207)
.|++||||||++++| ++++||++++. .|...+ +.+||+.+++++||+||||+|++|+|+.|+++++++|+
T Consensus 394 ~Fl~ra~dQI~~~~a--------~~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~ 465 (641)
T PRK12571 394 TFLQRGYDQLLHDVA--------LQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAA 465 (641)
T ss_pred HHHHHHHHHHHHHHh--------hcCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH
Confidence 567899999999999 78999999984 354433 34677788999999999999999999999999999999
Q ss_pred cC-CCcEEEEECcccccccCCCCcccCCCCccccCCceEEEEeCCceec
Q psy10429 160 RD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQVIMKTL 207 (207)
Q Consensus 160 ~~-~~P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka~v~r~G~dvti 207 (207)
+. ++|+|||++|..+.. ..+.++++.+++||++++|+|+|+||
T Consensus 466 ~~~~~P~~ir~~r~~~~~-----~~~~~~~~~~~~gk~~vlr~G~ditI 509 (641)
T PRK12571 466 AHDDGPIAVRFPRGEGVG-----VEIPAEGTILGIGKGRVPREGPDVAI 509 (641)
T ss_pred hCCCCcEEEEEecCcCCc-----cccCCCCccccCceeEEEecCCCEEE
Confidence 94 899999998754421 01223456789999999999999986
No 18
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=8.4e-41 Score=311.62 Aligned_cols=185 Identities=21% Similarity=0.219 Sum_probs=160.0
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEechh
Q psy10429 2 TVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTF 81 (207)
Q Consensus 2 ~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~ 81 (207)
+++++++++|.+++++|++++++++|+. +.+++ ++|+++| |+||||+||+||+|+++|+|||++|++||+.+|+
T Consensus 279 ~~~~~~~~~l~~~~~~d~~i~~i~~~~~---~~~~~-~~f~~~f-P~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~fs- 352 (581)
T PRK12315 279 SYSSVTLDYLLKKIKEGKPVVAINAAIP---GVFGL-KEFRKKY-PDQYVDVGIAEQESVAFASGIAANGARPVIFVNS- 352 (581)
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCccc---cccCc-HHHHHhc-cccccCCCchHHHHHHHHHHHHHCcCeEEEEeeH-
Confidence 6899999999999999999999999974 33344 8999999 6999999999999999999999999999997776
Q ss_pred hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCC-CCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc
Q psy10429 82 NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASG-VAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR 160 (207)
Q Consensus 82 ~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g-~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~ 160 (207)
+|++||||||++++| ++++||++++..++..+ +.+||+.+|+++||+||||+|++|+|+.|++.++++|++
T Consensus 353 ~Fl~ra~dQi~~d~a--------~~~lpv~~~~~~~g~~~dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~ 424 (581)
T PRK12315 353 TFLQRAYDQLSHDLA--------INNNPAVMIVFGGSISGNDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALT 424 (581)
T ss_pred HHHHHHHHHHHHHHH--------hcCCCEEEEEECCcccCCCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh
Confidence 567899999999999 67999999998655544 456888899999999999999999999999999999998
Q ss_pred C-CCcEEEEECcccccccCCCCcccCCCCccccCCceEEEEeCCceec
Q psy10429 161 D-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQVIMKTL 207 (207)
Q Consensus 161 ~-~~P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka~v~r~G~dvti 207 (207)
. ++|+|||++|..+.... ..+..++.+|++++|+|+|+||
T Consensus 425 ~~~gP~~ir~~r~~~~~~~-------~~~~~~~~~k~~v~~~g~dvti 465 (581)
T PRK12315 425 QHEHPVAIRVPEHGVESGP-------TVDTDYSTLKYEVTKAGEKVAI 465 (581)
T ss_pred CCCCcEEEEEcCCccCCCC-------CCccCcccceEEEEecCCCEEE
Confidence 6 79999999977664311 1122345679999999999986
No 19
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=100.00 E-value=1.5e-40 Score=267.83 Aligned_cols=168 Identities=35% Similarity=0.499 Sum_probs=135.8
Q ss_pred CcHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcC--CccEEEe
Q psy10429 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAG--LRPVCEF 78 (207)
Q Consensus 1 ~~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G--~~pi~~~ 78 (207)
+++|++++++|.+++++||+++++++|++ ++++..+.++...+|++||+|+||+|++|+|+|+|||++| ++||+.+
T Consensus 3 ~~~~~a~~~~l~~~~~~d~~vv~~~~D~~--~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~ 80 (178)
T PF02779_consen 3 ISMRDAFGEALAELAEEDPRVVVIGADLG--GGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVEST 80 (178)
T ss_dssp EEHHHHHHHHHHHHHHHTTTEEEEESSTH--HHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEEEE
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcC--cchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeEee
Confidence 57999999999999999999999999997 4555555677777777899999999999999999999999 5666655
Q ss_pred chhhHH---HHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHH
Q psy10429 79 MTFNFS---MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLL 155 (207)
Q Consensus 79 ~~~~~~---~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll 155 (207)
++.|.. .|+++|++++.++. +.+++|+.+...|....+++||+++++++|+++|||+|++|+|+.|+++++
T Consensus 81 f~~F~~~~q~r~~~~~~~~~~~~------~~~v~v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l 154 (178)
T PF02779_consen 81 FADFLTPAQIRAFDQIRNDMAYG------QLPVPVGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAKGLL 154 (178)
T ss_dssp EGGGGGGGHHHHHHHHHHHHHHH------TS-EEEEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHH
T ss_pred ccccccccchhhhhhhhhhhhcc------cceecceeecCcccccccccccccccccccccccccccccCCCHHHHHHHH
Confidence 564444 49999999888853 445554444444444456789999999999999999999999999999999
Q ss_pred HHHHc--CCCcEEEEECcccccc
Q psy10429 156 KAAIR--DPDPVVFLENELLYGV 176 (207)
Q Consensus 156 ~~a~~--~~~P~~i~~~k~l~~~ 176 (207)
+++++ +++|+|||++|.+|+.
T Consensus 155 ~~a~~~~~~~P~~ir~~r~~~~~ 177 (178)
T PF02779_consen 155 RAAIRRESDGPVYIREPRGLYPH 177 (178)
T ss_dssp HHHHHSSSSSEEEEEEESSEES-
T ss_pred HHHHHhCCCCeEEEEeeHHhCCC
Confidence 99999 7899999999988854
No 20
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=6e-39 Score=291.96 Aligned_cols=187 Identities=22% Similarity=0.314 Sum_probs=162.0
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEechh
Q psy10429 2 TVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTF 81 (207)
Q Consensus 2 ~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~ 81 (207)
+|.++|.+.|.+++++|+++|.+++ ++..|+ ++ ..|.++| |+||||+|||||++|+.|+|||..|++||+.+++
T Consensus 317 sys~vf~~~L~~~a~~d~~ivaITa--AM~~gt-GL-~~F~~~f-P~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaIYS- 390 (627)
T COG1154 317 SYTKVFGDTLCELAAKDEKIVAITA--AMPEGT-GL-VKFSKKF-PDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAIYS- 390 (627)
T ss_pred CHHHHHHHHHHHHHhhCCCeEEEec--CCCCCC-Ch-HHHHHhC-chhheehhhhHHHHHHHHHHHHhCCCCCEEEEec-
Confidence 5889999999999999999999999 777777 54 7999999 6999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCC--CCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHH
Q psy10429 82 NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASG--VAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAI 159 (207)
Q Consensus 82 ~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g--~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~ 159 (207)
+|++||||||.+|+| .+++||++..-.++..| +.+||...|.++||+||||.|++|+|.+|.+.|+++++
T Consensus 391 TFLQRAYDQliHDva--------iqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ta~ 462 (627)
T COG1154 391 TFLQRAYDQLIHDVA--------IQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTAL 462 (627)
T ss_pred HHHHHHHHHHHHHHH--------hccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHH
Confidence 789999999999999 89999999865444433 34699999999999999999999999999999999999
Q ss_pred cCC-CcEEEEECcccccccCCCCcccCCCCccccCCceEEEEeCCceec
Q psy10429 160 RDP-DPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQVIMKTL 207 (207)
Q Consensus 160 ~~~-~P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka~v~r~G~dvti 207 (207)
..+ +|+.||-||+-. .......+...+++||++++|+|+||.|
T Consensus 463 ~~~~gP~AiRyPrg~~-----~~~~~~~~~~~~~~Gk~~i~~~G~~vai 506 (627)
T COG1154 463 AQDDGPVAIRYPRGNG-----VGVILTPELEPLEIGKGELLKEGEKVAI 506 (627)
T ss_pred hcCCCCeEEEecCCCC-----CCCCcccccccccccceEEEecCCcEEE
Confidence 986 899999774311 1111112246799999999999999875
No 21
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=2.7e-36 Score=283.77 Aligned_cols=183 Identities=17% Similarity=0.156 Sum_probs=153.4
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhh------hhcCCCceeeccchhHHHHHHHHHHHhcC-Ccc
Q psy10429 2 TVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLW------KKYGDKRVLDTPITEIGFAGIAVGAAMAG-LRP 74 (207)
Q Consensus 2 ~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~------~~~g~~r~~~~gIaE~~~vg~A~GlA~~G-~~p 74 (207)
++|++++++|.+++++||+++++++|++. +++ +..+. ++| |+||+|+||+||+|+|+|+|||++| ++|
T Consensus 320 ~~~~a~~~~l~~l~~~~~~v~vl~~D~~~--~~~--~~~~~~~~f~~~~~-p~R~~d~GIaE~~~vg~A~GlA~~G~~~p 394 (624)
T PRK05899 320 ATRKASGKALNALAKALPELVGGSADLAG--SNN--TKIKGSKDFAPEDY-SGRYIHYGVREFAMAAIANGLALHGGFIP 394 (624)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEeCCCcc--ccC--cccccccccCccCC-CCCeeeeChhHHHHHHHHHHHHHcCCCeE
Confidence 57999999999999999999999999864 322 12333 577 5999999999999999999999999 999
Q ss_pred EEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC--CCCCCchhHhHHHcCCCCcEEEeeCCHHHH
Q psy10429 75 VCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG--VAAQHSQCFGAWFTQCPGLKVVSPYNSEDA 151 (207)
Q Consensus 75 i~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g--~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~ 151 (207)
|++++++| +.|+++|||+. + ++++||++++.. |...| +.+||+.+++++||++|||+|++|+|++|+
T Consensus 395 v~~t~~~F-~~r~~~qir~~-~--------~~~~pv~~v~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d~~e~ 464 (624)
T PRK05899 395 FGGTFLVF-SDYARNAIRLA-A--------LMKLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANET 464 (624)
T ss_pred EEEEcHHH-HHHHHHHHHHH-H--------hcCCCEEEEEECCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCCHHHH
Confidence 99999976 59999999974 6 578999999764 55443 457888999999999999999999999999
Q ss_pred HHHHHHHHcC-CCcEEEEECcccccccCCCCcccCCC--CccccCCceEEEEeCCceec
Q psy10429 152 KGLLKAAIRD-PDPVVFLENELLYGVQYPMGDEALSK--DFVLPIGKAKVEKQVIMKTL 207 (207)
Q Consensus 152 ~~ll~~a~~~-~~P~~i~~~k~l~~~~~~~~~~~~~~--~~~~~~Gka~v~r~G~dvti 207 (207)
+++++++++. ++|+|||++|. +.+ .++++ .+.+++|+ +++|+|+|+||
T Consensus 465 ~~~l~~a~~~~~~P~~ir~~r~------~~~-~~~~~~~~~~~~~G~-~~l~~G~dvti 515 (624)
T PRK05899 465 AAAWKYALERKDGPSALVLTRQ------NLP-VLERTAQEEGVAKGG-YVLRDDPDVIL 515 (624)
T ss_pred HHHHHHHHHcCCCCEEEEEeCC------CCC-CcCCccccccccCCc-EEEecCCCEEE
Confidence 9999999998 89999998642 112 22222 36789997 88999999986
No 22
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=100.00 E-value=1.3e-34 Score=230.67 Aligned_cols=155 Identities=39% Similarity=0.524 Sum_probs=131.0
Q ss_pred cHHHHHHHHHHHHHhcCC-cEEEEecCCCccCCchhhchhhhhhcC------CCceeeccchhHHHHHHHHHHHhcCCcc
Q psy10429 2 TVRDALNSALDEEMARDE-KVFLLGEEVALYDGAYKVSRGLWKKYG------DKRVLDTPITEIGFAGIAVGAAMAGLRP 74 (207)
Q Consensus 2 ~~~~a~~~~L~~~~~~~~-~vv~~~~D~~~~~g~~~~~~~l~~~~g------~~r~~~~gIaE~~~vg~A~GlA~~G~~p 74 (207)
++|+++.++|.+++++|+ +++++++|++.+.+. . ..+.|| ++||+|+||+|++|+++|+|+|++|++|
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~----~-~~~~~~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~p 75 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGL----D-RGGVFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLRP 75 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCC----C-cCCccCCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCCc
Confidence 479999999999999965 999999999754322 1 245553 3459999999999999999999999999
Q ss_pred EEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCC--CCCCCchhHhHHHcCCCCcEEEeeCCHHHHH
Q psy10429 75 VCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASG--VAAQHSQCFGAWFTQCPGLKVVSPYNSEDAK 152 (207)
Q Consensus 75 i~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g--~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~ 152 (207)
|+++++.|+. |++||++++++ ..+++++++...|...| +.+||++++++++++|||++|++|+|+.|++
T Consensus 76 i~~~~~~f~~-~a~~~~~~~~~--------~~~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~~ 146 (168)
T smart00861 76 VVAIFFTFFD-RAKDQIRSDGA--------MGRVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAK 146 (168)
T ss_pred EEEeeHHHHH-HHHHHHHHhCc--------ccCCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHHH
Confidence 9999997765 99999999888 33788888776555544 3459999999999999999999999999999
Q ss_pred HHHHHHHcC-CCcEEEEEC
Q psy10429 153 GLLKAAIRD-PDPVVFLEN 170 (207)
Q Consensus 153 ~ll~~a~~~-~~P~~i~~~ 170 (207)
++++++++. ++|+|||.+
T Consensus 147 ~~l~~a~~~~~~p~~i~~~ 165 (168)
T smart00861 147 GLLRAAIRRDDGPPVIRLE 165 (168)
T ss_pred HHHHHHHhCCCCCEEEEec
Confidence 999999987 789999865
No 23
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=1.4e-34 Score=273.29 Aligned_cols=189 Identities=14% Similarity=0.115 Sum_probs=155.0
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCccCCch-hhchhhhhhcCCCceeeccchhHHHHHHHHHHHh-cCCccEEEec
Q psy10429 2 TVRDALNSALDEEMARDEKVFLLGEEVALYDGAY-KVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAM-AGLRPVCEFM 79 (207)
Q Consensus 2 ~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~-~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~-~G~~pi~~~~ 79 (207)
++|+++.++|.++.+.+|+++.+++|+..++.+. .-...|+++||.+||||+||+||+|+++|+|||+ .|++||+.+|
T Consensus 356 a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~P~~rfi~~GIaEq~mv~~AaGlA~~~G~~P~~~tf 435 (661)
T PTZ00089 356 ATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKASPEGRYIRFGVREHAMCAIMNGIAAHGGFIPFGATF 435 (661)
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccCCCCCeeeeeecHHHHHHHHHHHHHcCCCeEEEEeh
Confidence 5899999999999999999999999996544210 0013788999438999999999999999999999 8999999999
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeC-CCCCCC--CCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHH
Q psy10429 80 TFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP-NGAASG--VAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLK 156 (207)
Q Consensus 80 ~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~-~G~~~g--~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~ 156 (207)
++| ++||+||||+. | ++++||++++. +|.+.| +.+||+.+|+++||.||||+|+.|+|+.|++.+++
T Consensus 436 ~~F-l~Ra~dqir~~-a--------l~~lpV~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~PaD~~E~~~~l~ 505 (661)
T PTZ00089 436 LNF-YGYALGAVRLA-A--------LSHHPVIYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRPADGTETSGAYA 505 (661)
T ss_pred HHH-HHHHHHHHHHH-H--------hcCCCeEEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEecCCHHHHHHHHH
Confidence 965 67999999865 8 78999999974 354444 46799999999999999999999999999999999
Q ss_pred HHHc-CCCcEEEEECcccccccCCCCcccCCCCccccCCceEEEEeC---Cceec
Q psy10429 157 AAIR-DPDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQV---IMKTL 207 (207)
Q Consensus 157 ~a~~-~~~P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka~v~r~G---~dvti 207 (207)
++++ .++|+|||.+|. +++ .++.++..+..+++.++|+| .|+||
T Consensus 506 ~al~~~~gP~~irl~R~------~~~-~~~~~~~~~~~~g~~vl~~~~~~~dv~i 553 (661)
T PTZ00089 506 LALANAKTPTILCLSRQ------NTP-PLPGSSIEGVLKGAYIVVDFTNSPQLIL 553 (661)
T ss_pred HHHHcCCCCEEEEecCC------CCC-CcCCCccccccCceEEEeccCCCCCEEE
Confidence 9994 589999997632 222 23334445567788899975 78886
No 24
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=2.1e-34 Score=271.85 Aligned_cols=187 Identities=15% Similarity=0.095 Sum_probs=155.3
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCccCCc-hhhchhhhhhcCCCceeeccchhHHHHHHHHHHHh-cCCccEEEec
Q psy10429 2 TVRDALNSALDEEMARDEKVFLLGEEVALYDGA-YKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAM-AGLRPVCEFM 79 (207)
Q Consensus 2 ~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~-~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~-~G~~pi~~~~ 79 (207)
.+|+++.++|.++.+++|+++++++|++.++.+ +.-...|+++| |+||||+||+||+|+++|+|||+ .|++||+.+|
T Consensus 356 a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~-p~r~i~~GIaEq~mv~~aaGlA~~~G~~P~~~tf 434 (663)
T PRK12753 356 ATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDP-AGNYIHYGVREFGMTAIANGIAHHGGFVPYTATF 434 (663)
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcC-CCCEEEeeecHHHHHHHHHHHHHhCCCeEEEEeh
Confidence 579999999999999999999999999765432 11126788999 69999999999999999999999 8999999999
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC--CCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHH
Q psy10429 80 TFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG--VAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLK 156 (207)
Q Consensus 80 ~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g--~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~ 156 (207)
++| +.|++||||+. | ++++||++++.. |.+.| +.+||+.+|+++||.||||+|+.|+|+.|++.+++
T Consensus 435 ~~F-~~r~~~qir~~-a--------~~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~~~~~~ 504 (663)
T PRK12753 435 LMF-VEYARNAARMA-A--------LMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAAVAWK 504 (663)
T ss_pred HHH-HHHHHHHHHHH-H--------hcCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHHHHHHH
Confidence 966 56999999965 8 789999999764 55555 45799999999999999999999999999999999
Q ss_pred HHHc-CCCcEEEEECcccccccCCCCcccCCC---CccccCCceEEEEeCC---ceec
Q psy10429 157 AAIR-DPDPVVFLENELLYGVQYPMGDEALSK---DFVLPIGKAKVEKQVI---MKTL 207 (207)
Q Consensus 157 ~a~~-~~~P~~i~~~k~l~~~~~~~~~~~~~~---~~~~~~Gka~v~r~G~---dvti 207 (207)
++++ .++|+|||.+| . +++ .++.+ ...+..|+ +++++|+ ||||
T Consensus 505 ~al~~~~gP~~irl~R----~--~~~-~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~i 554 (663)
T PRK12753 505 LAIERHNGPTALILSR----Q--NLA-QQERTPEQVKNIARGG-YILKDSGGKPDLIL 554 (663)
T ss_pred HHHhcCCCCEEEEecC----C--CCC-CCCCcccchhhccCCc-EEEeccCCCCCEEE
Confidence 9998 58999999663 2 222 23322 23466776 8889875 8886
No 25
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=2.6e-34 Score=271.15 Aligned_cols=187 Identities=14% Similarity=0.091 Sum_probs=154.4
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchh-hchhhhhhcCCCceeeccchhHHHHHHHHHHHh-cCCccEEEec
Q psy10429 2 TVRDALNSALDEEMARDEKVFLLGEEVALYDGAYK-VSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAM-AGLRPVCEFM 79 (207)
Q Consensus 2 ~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~-~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~-~G~~pi~~~~ 79 (207)
++|+++.++|.++.+++|+++++++|+..++.+-. -...|+++| |+||+|+||+||+|+++|+|||+ .|++||+.+|
T Consensus 350 atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~-p~rfi~~GIaEq~mv~~AaGlA~~gG~~p~~~tf 428 (653)
T TIGR00232 350 ATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENP-LGNYIHYGVREFAMGAIMNGIALHGGFKPYGGTF 428 (653)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcC-CCCeEeecccHHHHHHHHHHHHHcCCCeEEEEEh
Confidence 58999999999999999999999999975543210 001288899 69999999999999999999999 7899999999
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC--CCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHH
Q psy10429 80 TFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG--VAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLK 156 (207)
Q Consensus 80 ~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g--~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~ 156 (207)
++| +.|+++|||+. + ++++||++++.+ |...| +.+||+.+++++||+||||+|+.|+|+.|++.+++
T Consensus 429 ~~F-~~r~~~~ir~~-a--------~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~PaD~~E~~~~~~ 498 (653)
T TIGR00232 429 LMF-VDYARPAIRLA-A--------LMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRPCDGNETAAAWK 498 (653)
T ss_pred HHH-HHHHHHHHHHH-H--------hcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHH
Confidence 965 66999999966 7 689999999864 55554 45799999999999999999999999999999999
Q ss_pred HHH-cCCCcEEEEECcccccccCCCCcccCCCC-ccccCCceEEE--EeCCceec
Q psy10429 157 AAI-RDPDPVVFLENELLYGVQYPMGDEALSKD-FVLPIGKAKVE--KQVIMKTL 207 (207)
Q Consensus 157 ~a~-~~~~P~~i~~~k~l~~~~~~~~~~~~~~~-~~~~~Gka~v~--r~G~dvti 207 (207)
+++ +.++|+|||.+|... + .+++.+ ..++.|+ .++ ++|+||||
T Consensus 499 ~a~~~~~gP~~irl~r~~~------~-~~~~~~~~~~~~G~-~vl~~~~g~dv~i 545 (653)
T TIGR00232 499 YALESQDGPTALILSRQNL------P-QLEESSLEKVLKGG-YVLKDSKGPDIIL 545 (653)
T ss_pred HHHhcCCCcEEEEEcCCcc------C-CCCcccccccCCCc-EEEEecCCCCEEE
Confidence 999 568999999875322 2 222333 4578887 667 67999986
No 26
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=9.7e-34 Score=266.60 Aligned_cols=187 Identities=13% Similarity=0.096 Sum_probs=155.3
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCccCCch-hhchhhhhhcCCCceeeccchhHHHHHHHHHHHh-cCCccEEEec
Q psy10429 2 TVRDALNSALDEEMARDEKVFLLGEEVALYDGAY-KVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAM-AGLRPVCEFM 79 (207)
Q Consensus 2 ~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~-~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~-~G~~pi~~~~ 79 (207)
++|+++.++|.++.+++|+++++++|++.++.+. .-+..|+++| |+||||+||+||+|+++|+|||+ .|++||+.+|
T Consensus 356 atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~-p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~~tf 434 (663)
T PRK12754 356 ASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGIALHGGFLPYTSTF 434 (663)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccC-CCCeEeeccchhhHHHHHhhHHhcCCCeEEEEee
Confidence 5799999999999999999999999997655321 1136788899 68999999999999999999999 6899999999
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC--CCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHH
Q psy10429 80 TFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG--VAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLK 156 (207)
Q Consensus 80 ~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g--~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~ 156 (207)
++| +.|++||||+. | ++++||++++.. |.+.| +.+||+.+|+++||.||||+|+.|+|+.|+..+++
T Consensus 435 ~~F-~~r~~~qir~~-a--------~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn~~V~~PaD~~E~~~~~~ 504 (663)
T PRK12754 435 LMF-VEYARNAVRMA-A--------LMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWK 504 (663)
T ss_pred HHH-HHHHHHHHHHH-H--------HcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCCcEEecCCCHHHHHHHHH
Confidence 976 56999999975 7 689999999875 55555 45799999999999999999999999999999999
Q ss_pred HHHcC-CCcEEEEECcccccccCCCCcccCC--C-CccccCCceEEEEeCC---ceec
Q psy10429 157 AAIRD-PDPVVFLENELLYGVQYPMGDEALS--K-DFVLPIGKAKVEKQVI---MKTL 207 (207)
Q Consensus 157 ~a~~~-~~P~~i~~~k~l~~~~~~~~~~~~~--~-~~~~~~Gka~v~r~G~---dvti 207 (207)
++++. ++|+|||.++ . +++ .++. + ...+..|+ .++++|+ ||||
T Consensus 505 ~a~~~~~gP~yirl~R----~--~~p-~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~i 554 (663)
T PRK12754 505 YGVERQDGPTALILSR----Q--NLA-QQERTEEQLANIARGG-YVLKDCAGQPELIF 554 (663)
T ss_pred HHHhCCCCCEEEEeCC----C--CCC-CCCCccchhhhcccCc-EEEEecCCCCCEEE
Confidence 99987 7999999663 2 222 2222 1 24566776 8889875 8876
No 27
>PLN02790 transketolase
Probab=100.00 E-value=4.3e-33 Score=262.87 Aligned_cols=188 Identities=15% Similarity=0.114 Sum_probs=154.7
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCccCCch-hhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc--CCccEEEe
Q psy10429 2 TVRDALNSALDEEMARDEKVFLLGEEVALYDGAY-KVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA--GLRPVCEF 78 (207)
Q Consensus 2 ~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~-~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~--G~~pi~~~ 78 (207)
++|+++.+.|..+.+.+|+++++++|+..++.+. .-+..|+++|+|+||||+||+||+|+++|+|||+. |++||+.+
T Consensus 345 a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~~t 424 (654)
T PLN02790 345 ATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIPYCAT 424 (654)
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhcCCCcEEEEEe
Confidence 5799999999999999999999999997655432 11367988854799999999999999999999995 69999999
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC--CCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHH
Q psy10429 79 MTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG--VAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLL 155 (207)
Q Consensus 79 ~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g--~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll 155 (207)
|.+|. .++++|||+. | ++++||++++.. |...| +.+||+.+|+++||.||||+|+.|+|+.|++.++
T Consensus 425 f~~F~-~~~~~~ir~~-a--------l~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~PaD~~E~~~~l 494 (654)
T PLN02790 425 FFVFT-DYMRAAMRLS-A--------LSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRPADGNETAGAY 494 (654)
T ss_pred cHHHH-HHHHHHHHHH-H--------hcCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeCCCHHHHHHHH
Confidence 99775 5999999865 8 789999999854 44444 4679999999999999999999999999999999
Q ss_pred HHHHc-CCCcEEEEECcccccccCCCCcccCCC-CccccCCceEEEEeC-----Cceec
Q psy10429 156 KAAIR-DPDPVVFLENELLYGVQYPMGDEALSK-DFVLPIGKAKVEKQV-----IMKTL 207 (207)
Q Consensus 156 ~~a~~-~~~P~~i~~~k~l~~~~~~~~~~~~~~-~~~~~~Gka~v~r~G-----~dvti 207 (207)
+++++ .++|+|||.+|. +++ .++.+ ...+++|+ .++++| .|++|
T Consensus 495 ~~al~~~~gP~~irl~R~------~~~-~~~~~~~~~~~~G~-~vl~~~~~~~~~dv~i 545 (654)
T PLN02790 495 KVAVTNRKRPTVLALSRQ------KVP-NLPGTSIEGVEKGG-YVISDNSSGNKPDLIL 545 (654)
T ss_pred HHHHHcCCCCEEEEecCC------CCC-CCCCCcccccccCc-EEEEeCCCCCCCCEEE
Confidence 99998 589999997642 222 22222 35688997 666774 78876
No 28
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=1.3e-32 Score=264.13 Aligned_cols=189 Identities=22% Similarity=0.246 Sum_probs=166.8
Q ss_pred CcHHHHHHHHHHHHHhcCCcEEEEecCCCc--------------cCCchhhchhhhhhcCCCceeeccchhHHHHHHHHH
Q psy10429 1 MTVRDALNSALDEEMARDEKVFLLGEEVAL--------------YDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVG 66 (207)
Q Consensus 1 ~~~~~a~~~~L~~~~~~~~~vv~~~~D~~~--------------~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~G 66 (207)
++|.+|++.++.++|++|++|+++|+|++. .||+|+.+++|.++||+.|++|+||+|.+++|.+.|
T Consensus 586 ~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~~G~~~G 665 (929)
T TIGR00239 586 FDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESVLGFEYG 665 (929)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHHHHHHHHh
Confidence 468999999999999999999999999986 677779999999999999999999999999999999
Q ss_pred HHhcCCcc--EEEechhhHHH---HHHHHHHHH-HhhhhhhccCCccCCEEEEeCCCCCCCCCCCCchhHhHHH--cCCC
Q psy10429 67 AAMAGLRP--VCEFMTFNFSM---QAIDHIINS-AAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGAWF--TQCP 138 (207)
Q Consensus 67 lA~~G~~p--i~~~~~~~~~~---ra~dqi~~~-~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs~~~~a~~--~~iP 138 (207)
+|+.|.+| +++.||.+|+. .++|||.+. .+|+++|+| ++++.|.|+..+++.|||+..|+++ .+.|
T Consensus 666 ~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sg------lv~~~p~G~~g~g~~hsS~~~E~~lql~~~~ 739 (929)
T TIGR00239 666 YATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSG------LVMLLPHGYEGQGPEHSSGRLERFLQLAAEQ 739 (929)
T ss_pred HHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccC------eEEEecCcCCCCCchhhccCHHHHHHHhCCC
Confidence 99999877 59999999998 669999988 688877765 9999999977667789999999999 7889
Q ss_pred CcEEEeeCCHHHHHHHHH-HHHcC-CCcEEEEECcccccccCCC--CcccCCCCccccCCc
Q psy10429 139 GLKVVSPYNSEDAKGLLK-AAIRD-PDPVVFLENELLYGVQYPM--GDEALSKDFVLPIGK 195 (207)
Q Consensus 139 gl~v~~P~~~~e~~~ll~-~a~~~-~~P~~i~~~k~l~~~~~~~--~~~~~~~~~~~~~Gk 195 (207)
||+|+.|++|.|+++||+ +++++ ++|+++++||.||+.+..+ -..+++..+..+++.
T Consensus 740 gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~~f~~~i~~ 800 (929)
T TIGR00239 740 NMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEGTFQPVIGE 800 (929)
T ss_pred CCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCCCccccccc
Confidence 999999999999999999 79997 9999999999999876511 012345567777854
No 29
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=5.4e-32 Score=260.71 Aligned_cols=199 Identities=20% Similarity=0.224 Sum_probs=171.1
Q ss_pred CcHHHHHHHHHHHHHhcCCcEEEEecCCCc--------------cCCchhhchhhhhhcCCCceeeccchhHHHHHHHHH
Q psy10429 1 MTVRDALNSALDEEMARDEKVFLLGEEVAL--------------YDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVG 66 (207)
Q Consensus 1 ~~~~~a~~~~L~~~~~~~~~vv~~~~D~~~--------------~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~G 66 (207)
++|..|...++..+|++|++|+++|+|++. .+|+|+.+++|.++||++|++|+||+|.+++|.+.|
T Consensus 584 idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~~G 663 (924)
T PRK09404 584 IDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFEYG 663 (924)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHHHHH
Confidence 358899999999999999999999999974 789999999999999999999999999999999999
Q ss_pred HHhcCCcc--EEEechhhHHH---HHHHHHHHHH-hhhhhhccCCccCCEEEEeCCCCCCCCCCCCchhHhHHHcCC--C
Q psy10429 67 AAMAGLRP--VCEFMTFNFSM---QAIDHIINSA-AKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGAWFTQC--P 138 (207)
Q Consensus 67 lA~~G~~p--i~~~~~~~~~~---ra~dqi~~~~-a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs~~~~a~~~~i--P 138 (207)
+|+.|++| |++.||.+|+. .++||+.+.+ +|+++++| ++++.|.|+..+++.|||+..++++.++ |
T Consensus 664 ~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~sg------lv~~~p~G~~g~g~~hsS~~~E~~l~~~~~~ 737 (924)
T PRK09404 664 YSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSG------LVMLLPHGYEGQGPEHSSARLERFLQLCAED 737 (924)
T ss_pred HHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCccC------eEEEecCcCCCCChhhhccCHHHHHHhCCCC
Confidence 99999975 99999999998 6699999886 88876654 9999999976667779999999999887 6
Q ss_pred CcEEEeeCCHHHHHHHHHHH-HcC-CCcEEEEECcccccccCCCC--cccCCCCccccCCceEEEEeCCcee
Q psy10429 139 GLKVVSPYNSEDAKGLLKAA-IRD-PDPVVFLENELLYGVQYPMG--DEALSKDFVLPIGKAKVEKQVIMKT 206 (207)
Q Consensus 139 gl~v~~P~~~~e~~~ll~~a-~~~-~~P~~i~~~k~l~~~~~~~~--~~~~~~~~~~~~Gka~v~r~G~dvt 206 (207)
||+|+.|++|.|+++||+.+ +++ ++|++|++||.||+.+..+. ..+.+..+..+++++. .++|+||+
T Consensus 738 gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~~~f~~vi~~~~-~~~~~~v~ 808 (924)
T PRK09404 738 NMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEGSFQPVIGDID-ELDPKKVK 808 (924)
T ss_pred CCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCCHHHcCCCCceeeccccc-ccCcccee
Confidence 99999999999999999986 477 59999999999998754321 1222334666777776 67788883
No 30
>KOG0523|consensus
Probab=99.97 E-value=3.7e-31 Score=240.12 Aligned_cols=183 Identities=20% Similarity=0.272 Sum_probs=151.3
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCC-ccEEEech
Q psy10429 2 TVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGL-RPVCEFMT 80 (207)
Q Consensus 2 ~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~-~pi~~~~~ 80 (207)
++|+++.++|..+.+.+|+++.+.+|+..++ +++-|+++| |+||||+||+||||+++|+|+|..|+ +||+.+|+
T Consensus 321 Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st----~td~~~~~~-p~R~i~~giaEq~mv~ia~G~a~~g~~~Pf~~tf~ 395 (632)
T KOG0523|consen 321 ATRKAFGEALAALAEADPRVIGGSADLKNST----LTDFFPKRF-PERFIECGIAEQNMVGIANGIACRGRTIPFCGTFA 395 (632)
T ss_pred hHHHHHHHHHHHHhhcCcCeEEEecccCCCc----hhhhccccC-ccceEEEeeehhhhHHhhhchhcCCCccchhHHHH
Confidence 5799999999999999999999999986433 356788899 69999999999999999999999999 99999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeC-CCCCCCC-C-CCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHH
Q psy10429 81 FNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP-NGAASGV-A-AQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKA 157 (207)
Q Consensus 81 ~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~-~G~~~g~-~-~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~ 157 (207)
.|+.|||||||+++- .+.++++++. +|.+.|. | +|+..+|.++||+||||+|+.|+|..|+..+++.
T Consensus 396 -~F~trA~dqvr~~a~---------s~~~v~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~~PaD~~et~~av~~ 465 (632)
T KOG0523|consen 396 -AFFTRAFDQVRMGAL---------SQANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFRPADGNETENAVAT 465 (632)
T ss_pred -HHHHHhhhheeehhh---------ccCCcEEEEEeccccccCCCcccccHHHHHHHHhCCCceEEecCchHHHHHHHHH
Confidence 468899999997655 4555566654 4666552 4 4778999999999999999999999999999999
Q ss_pred HHcCCC-cEEEEECcccccccCCCCcccCCCCccccCCceE-EEEeCC-ceec
Q psy10429 158 AIRDPD-PVVFLENELLYGVQYPMGDEALSKDFVLPIGKAK-VEKQVI-MKTL 207 (207)
Q Consensus 158 a~~~~~-P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka~-v~r~G~-dvti 207 (207)
|++.++ |.+++.+ |. .. ..++....+.+||++ |+++++ ||+|
T Consensus 466 Aa~~~~~p~i~~~~----r~--~~--~~~~~~~~~~igkg~~vl~~~~~dV~L 510 (632)
T KOG0523|consen 466 AANTKGTPSIRTLS----RQ--NL--PIYNNTEIEEIGKGKYVLQEVEPDVIL 510 (632)
T ss_pred HHhcCCCeeEEEec----Cc--cc--cccCCCchhhhccccEEEecCCCCEEE
Confidence 999866 7777633 22 21 234556668999999 788898 7875
No 31
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.97 E-value=2.8e-29 Score=240.15 Aligned_cols=192 Identities=11% Similarity=0.040 Sum_probs=157.7
Q ss_pred CcHHHHHHHHHHHHHhc---CCcEEEEecCCCccCCc---------------------hhhchhhhhhcCCCceeeccch
Q psy10429 1 MTVRDALNSALDEEMAR---DEKVFLLGEEVALYDGA---------------------YKVSRGLWKKYGDKRVLDTPIT 56 (207)
Q Consensus 1 ~~~~~a~~~~L~~~~~~---~~~vv~~~~D~~~~~g~---------------------~~~~~~l~~~~g~~r~~~~gIa 56 (207)
++.+.||+..|.++++. +++||.+.+|++.+.+. -.....|+++| |+||+|+||+
T Consensus 495 ~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~-PgRf~e~GIA 573 (891)
T PRK09405 495 ISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESK-DGQILQEGIN 573 (891)
T ss_pred ccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHcC-CCcEEEechh
Confidence 36789999999999996 99999999999864443 11235688999 7999999999
Q ss_pred hHHHHH--HHHHHHhc----CCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC-C--CCCCCc
Q psy10429 57 EIGFAG--IAVGAAMA----GLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS-G--VAAQHS 127 (207)
Q Consensus 57 E~~~vg--~A~GlA~~----G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~-g--~~~hhs 127 (207)
||||++ +|+|+|++ |++||+.+|++|.++|++|||++.++ +++.++++.+..|++. + +.+||+
T Consensus 574 Eqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~--------~~~~~v~iggt~gg~tl~~eG~qHqd 645 (891)
T PRK09405 574 EAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGD--------QRARGFLLGGTAGRTTLNGEGLQHED 645 (891)
T ss_pred hhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHH--------hcCCCeEEEEECccccCCCCcccCCc
Confidence 999999 99999998 88999999999889999999999999 7899999999876653 3 456888
Q ss_pred hhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----CCC--cEEEEECcccccccCCCCcccCCCCccccCCce-EEEE
Q psy10429 128 QCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----DPD--PVVFLENELLYGVQYPMGDEALSKDFVLPIGKA-KVEK 200 (207)
Q Consensus 128 ~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~~~--P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka-~v~r 200 (207)
..+..+||.+|||+|+.|+|+.|++.+++.+++ ..+ |+|+|.. . .+......++++.+.+||+ .++|
T Consensus 646 g~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~-----n-e~~~~~~~pe~~~~~igKg~y~Lr 719 (891)
T PRK09405 646 GHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVM-----N-ENYHQPAMPEGAEEGILKGMYKLE 719 (891)
T ss_pred hhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeC-----C-CCCCCCCCCcccccccceEEEEec
Confidence 899999999999999999999999999999876 555 6778742 1 1111111124677899997 9999
Q ss_pred eCC------ceec
Q psy10429 201 QVI------MKTL 207 (207)
Q Consensus 201 ~G~------dvti 207 (207)
+|+ ||+|
T Consensus 720 ~g~~~~~~~dV~L 732 (891)
T PRK09405 720 TAEGKKGKPKVQL 732 (891)
T ss_pred cCCCCCCCCCEEE
Confidence 987 7876
No 32
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.96 E-value=8.8e-28 Score=229.92 Aligned_cols=192 Identities=13% Similarity=0.090 Sum_probs=150.6
Q ss_pred CcHHHHHHHHHHHHHh---cCCcEEEEecCCCccCCc---h------------------hhchhhhhhcCCCceeeccch
Q psy10429 1 MTVRDALNSALDEEMA---RDEKVFLLGEEVALYDGA---Y------------------KVSRGLWKKYGDKRVLDTPIT 56 (207)
Q Consensus 1 ~~~~~a~~~~L~~~~~---~~~~vv~~~~D~~~~~g~---~------------------~~~~~l~~~~g~~r~~~~gIa 56 (207)
++.+.||...|.++++ ..++||-+.+|.+.+.|. | .....+++.+ |+||+|+||+
T Consensus 490 ~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~-p~R~ie~GIA 568 (889)
T TIGR03186 490 MSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDT-DGQILEEGIS 568 (889)
T ss_pred ccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccchHHHHHHhhcC-CCcEEEechh
Confidence 3567899999666665 567899999998754411 0 0124567888 7999999999
Q ss_pred hHHHHH--HHHHHHhc----CCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CC-CCC--CCCCC
Q psy10429 57 EIGFAG--IAVGAAMA----GLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GA-ASG--VAAQH 126 (207)
Q Consensus 57 E~~~vg--~A~GlA~~----G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~-~~g--~~~hh 126 (207)
||||++ +|+|+|++ |++||+.+|++|.++|++|||++. + .++.+++++|.. |. +.+ +.+||
T Consensus 569 Eqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a-~--------~~~a~v~lvG~~aG~tTlg~eG~tHq 639 (889)
T TIGR03186 569 EAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAA-A--------DQRARGFLIGATSGKTTLGGEGLQHQ 639 (889)
T ss_pred hHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHH-h--------hcCCCcEEEEECCCccCCCCCccccc
Confidence 999999 99999998 889999999998889999999988 7 578898988865 65 344 45799
Q ss_pred chhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc------CCCcEEEEECcccccccCCCCcccCCCC-ccccCCc--e-
Q psy10429 127 SQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR------DPDPVVFLENELLYGVQYPMGDEALSKD-FVLPIGK--A- 196 (207)
Q Consensus 127 s~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~------~~~P~~i~~~k~l~~~~~~~~~~~~~~~-~~~~~Gk--a- 196 (207)
+.++++++|.||||+|+.|+|+.|++.+++++++ .++|+|||..+ ...+.+ .+++++ +.++.|+ +
T Consensus 640 ~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r----~~~~~p-~~~~~~~~~~~~gi~kg~ 714 (889)
T TIGR03186 640 DGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTN----ENYAQP-SLPEDRLDAVRRGILKGM 714 (889)
T ss_pred chHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCC----CCCCCC-CcCCCcccchhcchhhee
Confidence 9999999999999999999999999999999887 67999999553 322222 233333 3355665 6
Q ss_pred EEEE----eCCceec
Q psy10429 197 KVEK----QVIMKTL 207 (207)
Q Consensus 197 ~v~r----~G~dvti 207 (207)
.+++ +|+||+|
T Consensus 715 y~l~~~~~~g~dV~L 729 (889)
T TIGR03186 715 YPLDPAALAAARVQL 729 (889)
T ss_pred eEeeccCCCCCCEEE
Confidence 7788 5888886
No 33
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.95 E-value=8.5e-27 Score=223.83 Aligned_cols=193 Identities=13% Similarity=0.091 Sum_probs=151.4
Q ss_pred CcHHHHHHHHHHHHHhc---CCcEEEEecCCCccCCc---------h------------hhchhhhhhcCCCceeeccch
Q psy10429 1 MTVRDALNSALDEEMAR---DEKVFLLGEEVALYDGA---------Y------------KVSRGLWKKYGDKRVLDTPIT 56 (207)
Q Consensus 1 ~~~~~a~~~~L~~~~~~---~~~vv~~~~D~~~~~g~---------~------------~~~~~l~~~~g~~r~~~~gIa 56 (207)
++.|.||...|.++++. ++++|.+++|++.+.|. | .....++++| |+||+++||+
T Consensus 503 isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~-pgR~ie~GIa 581 (896)
T PRK13012 503 MSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAK-DGQILEEGIT 581 (896)
T ss_pred chHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCC-CCcEEecchh
Confidence 36799999999999988 99999999999843322 1 0124567899 7999999999
Q ss_pred hHHHHH--HHHHHHhc----CCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCC-CC--CCCCCc
Q psy10429 57 EIGFAG--IAVGAAMA----GLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAA-SG--VAAQHS 127 (207)
Q Consensus 57 E~~~vg--~A~GlA~~----G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~-~g--~~~hhs 127 (207)
||+|++ +|+|+|++ |++||+.+|++|.++|++||+++.++ ++..++++++..|++ .+ +.+||+
T Consensus 582 Eqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~--------~~~~~vlig~T~gg~tlg~dG~THQ~ 653 (896)
T PRK13012 582 EAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAAD--------QRARGFLLGATAGRTTLGGEGLQHQD 653 (896)
T ss_pred hhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHh--------cccCCeEEEEeCcccccCCCCCCCcc
Confidence 999999 88888877 67999999998888999999999988 678889999887664 33 356888
Q ss_pred hhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcC------CCcEEEEECcccccccCCCCcccCCC-CccccCCceEEE-
Q psy10429 128 QCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRD------PDPVVFLENELLYGVQYPMGDEALSK-DFVLPIGKAKVE- 199 (207)
Q Consensus 128 ~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~------~~P~~i~~~k~l~~~~~~~~~~~~~~-~~~~~~Gka~v~- 199 (207)
.++.+++|.|||++|+.|+|+.|++.+++.+++. +.|+|||..+ ...+.+ .++++ +..|..|+..+.
T Consensus 654 ~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r----~~~~~p-~~~~~~~~~i~kG~y~l~~ 728 (896)
T PRK13012 654 GHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMN----ENYAQP-ALPEGAEEGILKGMYRLAA 728 (896)
T ss_pred hHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecC----CCCCCC-CCCccchhccccCcEEEec
Confidence 9999999999999999999999999999988732 6799999543 222111 22222 356777874342
Q ss_pred -EeCCceec
Q psy10429 200 -KQVIMKTL 207 (207)
Q Consensus 200 -r~G~dvti 207 (207)
++|.||+|
T Consensus 729 ~~~g~dv~L 737 (896)
T PRK13012 729 AAEAPRVQL 737 (896)
T ss_pred cCCCCCEEE
Confidence 34668875
No 34
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=5e-22 Score=182.61 Aligned_cols=183 Identities=19% Similarity=0.177 Sum_probs=148.1
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCccCCch-hhchhhh-hhcCCCceeeccchhHHHHHHHHHHHhcC-CccEEEe
Q psy10429 2 TVRDALNSALDEEMARDEKVFLLGEEVALYDGAY-KVSRGLW-KKYGDKRVLDTPITEIGFAGIAVGAAMAG-LRPVCEF 78 (207)
Q Consensus 2 ~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~-~~~~~l~-~~~g~~r~~~~gIaE~~~vg~A~GlA~~G-~~pi~~~ 78 (207)
..|++..++|..+....|+++..++|++.++-+. +....|. ++| .+|++..||+|.+|.++++|||+.| ++||..+
T Consensus 355 ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~-~gr~i~~GVREf~M~AimNGialhGg~~pyggT 433 (663)
T COG0021 355 ATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENY-AGRYIHFGVREFAMAAIMNGIALHGGFIPYGGT 433 (663)
T ss_pred chHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCC-CCCeeEEeeHHHHHHHHHHhHHHhcCceeecce
Confidence 3699999999999999999999999998776542 2223454 566 6999999999999999999999985 5999999
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeC-CCCCCC--CCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHH
Q psy10429 79 MTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP-NGAASG--VAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLL 155 (207)
Q Consensus 79 ~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~-~G~~~g--~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll 155 (207)
|..| ..++..+|| -+| .+++|++++.. |+...| +.+||..+..+.+|.|||+.|+.|+|+.|+..++
T Consensus 434 FlvF-sdY~r~AiR-laA--------Lm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPaD~~Et~~aw 503 (663)
T COG0021 434 FLVF-SDYARPAVR-LAA--------LMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADANETAAAW 503 (663)
T ss_pred ehhh-HhhhhHHHH-HHH--------hcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecCChHHHHHHH
Confidence 9965 899999999 445 68999999865 344444 2348888889999999999999999999999999
Q ss_pred HHHHcC-CCcEEEEECcccccccCCCCcccCCCCccccCCceEEEEeC
Q psy10429 156 KAAIRD-PDPVVFLENELLYGVQYPMGDEALSKDFVLPIGKAKVEKQV 202 (207)
Q Consensus 156 ~~a~~~-~~P~~i~~~k~l~~~~~~~~~~~~~~~~~~~~Gka~v~r~G 202 (207)
+.|+++ ++|+++..+ |...| .+...+.......+.|++++
T Consensus 504 ~~Al~~~~gPt~Lilt----RQnlp---~l~~t~~~~~~kGaYvl~~~ 544 (663)
T COG0021 504 KYALERKDGPTALILT----RQNLP---VLERTDLEGVAKGAYVLKDS 544 (663)
T ss_pred HHHHhcCCCCeEEEEe----cCCCC---ccCCCccccccCccEEEeec
Confidence 999996 999999854 34333 33344455556777888874
No 35
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.53 E-value=2.7e-13 Score=105.44 Aligned_cols=146 Identities=25% Similarity=0.248 Sum_probs=107.3
Q ss_pred HHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEechhhHHHHHHHH
Q psy10429 11 LDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDH 90 (207)
Q Consensus 11 L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~~~~~ra~dq 90 (207)
|.+.+++..--++++.+..... .+.+.+. +. +++.++.++.|++++++|.|+|+.|.+|++.+.+..++.++++|
T Consensus 3 ~~~~l~~~gv~~vfg~pg~~~~---~l~~~~~-~~-~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~ 77 (154)
T cd06586 3 FAEVLTAWGVRHVFGYPGDEIS---SLLDALR-EG-DKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAING 77 (154)
T ss_pred HHHHHHHcCCCEEEEcCCcchH---HHHHHHh-cc-CCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHH
Confidence 4455555554455555422111 2333333 45 58999999999999999999999977999888855567799999
Q ss_pred HHHHHhhhhhhccCCccCCEEEEeCCCCC-C-CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHH---HcCCCcE
Q psy10429 91 IINSAAKTFYMSAGTVNVPIVFRGPNGAA-S-GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAA---IRDPDPV 165 (207)
Q Consensus 91 i~~~~a~~~~~~~~~~~~pvvi~~~~G~~-~-g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a---~~~~~P~ 165 (207)
|. +++ ..++||++++.+.+. . +.+.||.+++.++++.+|++.+..|++.++.+.+.++. ...++|+
T Consensus 78 l~-~a~--------~~~~Pvl~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv 148 (154)
T cd06586 78 LA-DAA--------AEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPV 148 (154)
T ss_pred HH-HHH--------hcCCCEEEEeCCCChhhhccCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCE
Confidence 98 666 568999999865333 2 45668888999999999999999998887776655443 3457899
Q ss_pred EEEEC
Q psy10429 166 VFLEN 170 (207)
Q Consensus 166 ~i~~~ 170 (207)
+++.|
T Consensus 149 ~l~ip 153 (154)
T cd06586 149 VVRLP 153 (154)
T ss_pred EEEcc
Confidence 99865
No 36
>PRK05261 putative phosphoketolase; Provisional
Probab=99.43 E-value=3.3e-12 Score=122.08 Aligned_cols=163 Identities=10% Similarity=0.026 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHhcCCc-EEEEecCCCccCCchhhchhhh------------hhcCCCceeeccchhHHHHHHHHHHHh
Q psy10429 3 VRDALNSALDEEMARDEK-VFLLGEEVALYDGAYKVSRGLW------------KKYGDKRVLDTPITEIGFAGIAVGAAM 69 (207)
Q Consensus 3 ~~~a~~~~L~~~~~~~~~-vv~~~~D~~~~~g~~~~~~~l~------------~~~g~~r~~~~gIaE~~~vg~A~GlA~ 69 (207)
+|. +++.|.++++.+|+ ++++++|...++....+.+... ..-+.+|+++ +++|..+.|++.|+++
T Consensus 393 tr~-~g~~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~~Grvie-~LsEh~~~g~~~Gy~L 470 (785)
T PRK05261 393 TRV-LGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAPDGRVME-VLSEHLCEGWLEGYLL 470 (785)
T ss_pred HHH-HHHHHHHHHHhCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCCCCCeee-eecHHHHHHHHHHHHh
Confidence 566 99999999999999 8889999876654321111000 1122479999 9999999999999999
Q ss_pred cCCccEEEechhhHH--HHHHHHH----HHHHhhhhhhccCCccCCEEEEeCCCCCCC--CCCCCc---hhHhHHHcCCC
Q psy10429 70 AGLRPVCEFMTFNFS--MQAIDHI----INSAAKTFYMSAGTVNVPIVFRGPNGAASG--VAAQHS---QCFGAWFTQCP 138 (207)
Q Consensus 70 ~G~~pi~~~~~~~~~--~ra~dqi----~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g--~~~hhs---~~~~a~~~~iP 138 (207)
.|.++++.+|.+|.. ...+.|+ |.. ....||-. ...++.++ +.+....+ +-+||. .+..+.+|. |
T Consensus 471 tG~~~~~~sYeaF~~ivd~m~~q~~kw~r~~-~~~~wr~~-~~sLn~l~-Ts~~~~qghNG~THQ~Pg~ie~l~~~r~-~ 546 (785)
T PRK05261 471 TGRHGFFSSYEAFIHIVDSMFNQHAKWLKVA-REIPWRKP-IPSLNYLL-TSHVWRQDHNGFSHQDPGFIDHVANKKP-D 546 (785)
T ss_pred cCCCcceecHHHHHHHHHHHHHHHHHHHHHH-hhcccCCC-CcceeEEe-ecceeecCCCCCCCCCchHHHHHHhcCC-C
Confidence 999999999986542 6777787 543 34444432 23444332 22222222 224776 455577777 9
Q ss_pred CcEEEeeCCHHHHHHHHHHHHcC-CCcEEEEECc
Q psy10429 139 GLKVVSPYNSEDAKGLLKAAIRD-PDPVVFLENE 171 (207)
Q Consensus 139 gl~v~~P~~~~e~~~ll~~a~~~-~~P~~i~~~k 171 (207)
++.|+.|+|++|+..+++.|+++ ++|.+|..+|
T Consensus 547 ~~rV~rPaDaNe~laa~~~al~s~~~p~~IvlsR 580 (785)
T PRK05261 547 VIRVYLPPDANTLLAVADHCLRSRNYINVIVAGK 580 (785)
T ss_pred cceEEeCCCHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999999999999999999987 8899998664
No 37
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=98.34 E-value=7.1e-06 Score=80.00 Aligned_cols=162 Identities=19% Similarity=0.241 Sum_probs=122.4
Q ss_pred HHHHHHhcCCcEEEEecCCCccCCch----------------hhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcC--
Q psy10429 10 ALDEEMARDEKVFLLGEEVALYDGAY----------------KVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAG-- 71 (207)
Q Consensus 10 ~L~~~~~~~~~vv~~~~D~~~~~g~~----------------~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G-- 71 (207)
++-.++.....|-+-|+|... |+| .-...|....++--++|..++|-+.+|.--|++...
T Consensus 896 AfGsLl~eG~~VRL~GQDsrR--GTF~QRHavl~D~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~GFEYGYSv~~pd 973 (1228)
T PRK12270 896 AFGSLLLEGTPVRLSGQDSRR--GTFSQRHAVLIDRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFEYGYSVERPD 973 (1228)
T ss_pred HHHHHHhcCceeeeeccccCC--cceeeeeEEEecCCCCcccCcHhhcCCCcceEEEecchhhHHHhhccceeeecCCCc
Confidence 445688888999999999742 222 222344444444568999999999999999999985
Q ss_pred CccEEEechhhHH---HHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCC-CCchhHhHHHcCC--CCcEEEee
Q psy10429 72 LRPVCEFMTFNFS---MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAA-QHSQCFGAWFTQC--PGLKVVSP 145 (207)
Q Consensus 72 ~~pi~~~~~~~~~---~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~-hhs~~~~a~~~~i--Pgl~v~~P 145 (207)
-.+.++.||.+|. +.-.|+...+. .-.| .+.-.|++..|.|.- |.|+ |.|--+|.++..+ .||+|..|
T Consensus 974 aLVlWEAQFGDF~NGAQtiIDefIss~---e~KW--gQ~S~vvlLLPHGyE-GQGPdHSSaRiERfLqlcAe~nm~Va~p 1047 (1228)
T PRK12270 974 ALVLWEAQFGDFANGAQTIIDEFISSG---EAKW--GQRSGVVLLLPHGYE-GQGPDHSSARIERFLQLCAEGNMTVAQP 1047 (1228)
T ss_pred ceeeehhhhcccccchHHHHHHHHhhh---Hhhh--ccccceEEEccCCcC-CCCCCcchHHHHHHHHhhccCCeEEEcc
Confidence 4888999999887 55566655322 1233 467789999998776 5555 5556788887776 79999999
Q ss_pred CCHHHHHHHHHHHH-cC-CCcEEEEECcccccccCC
Q psy10429 146 YNSEDAKGLLKAAI-RD-PDPVVFLENELLYGVQYP 179 (207)
Q Consensus 146 ~~~~e~~~ll~~a~-~~-~~P~~i~~~k~l~~~~~~ 179 (207)
|+|...-.|||+-. .. .+|.+++.||.|+|.+..
T Consensus 1048 sTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA 1083 (1228)
T PRK12270 1048 STPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAA 1083 (1228)
T ss_pred CChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhh
Confidence 99999999999554 33 889999999999998754
No 38
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=98.31 E-value=1.6e-05 Score=71.21 Aligned_cols=126 Identities=20% Similarity=0.215 Sum_probs=94.1
Q ss_pred hhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC--CCCC
Q psy10429 43 KKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN--GAAS 120 (207)
Q Consensus 43 ~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~--G~~~ 120 (207)
++++ ..|+.+- +|...+++|.|.|.+|.|.++.+-.+.|. .-.|++-...+ .++|+|++..+ |++.
T Consensus 45 ~~~~-~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTSg~Gl~-lm~E~~~~a~~---------~e~P~Viv~~~R~gp~t 112 (376)
T PRK08659 45 PKVG-GVFIQME-DEIASMAAVIGASWAGAKAMTATSGPGFS-LMQENIGYAAM---------TETPCVIVNVQRGGPST 112 (376)
T ss_pred hhhC-CEEEEeC-chHHHHHHHHhHHhhCCCeEeecCCCcHH-HHHHHHHHHHH---------cCCCEEEEEeecCCCCC
Confidence 3452 5788887 99999999999999999999999887654 46788753333 47999988654 5555
Q ss_pred CCCCCCchhHhHHHc--C--CCCcEEEeeCCHHHHHHHHHHHHc----CCCcEEEEECcccccccCCC
Q psy10429 121 GVAAQHSQCFGAWFT--Q--CPGLKVVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPM 180 (207)
Q Consensus 121 g~~~hhs~~~~a~~~--~--iPgl~v~~P~~~~e~~~ll~~a~~----~~~P~~i~~~k~l~~~~~~~ 180 (207)
|..++++|.|.-..+ . -=++.|+.|+|++|+..+...|.+ ..-|++++....+.+...++
T Consensus 113 g~p~~~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v 180 (376)
T PRK08659 113 GQPTKPAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKV 180 (376)
T ss_pred CCCCCcCcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccc
Confidence 666677777763333 1 124679999999999998887765 57799999888766665443
No 39
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.27 E-value=4.2e-06 Score=70.17 Aligned_cols=114 Identities=22% Similarity=0.195 Sum_probs=79.4
Q ss_pred eeeccchhHHHHHHHHHHHhcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeC--CCCCCCCCCCCc
Q psy10429 50 VLDTPITEIGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP--NGAASGVAAQHS 127 (207)
Q Consensus 50 ~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~--~G~~~g~~~hhs 127 (207)
.+.-.-+|...++++.|.|++|.|.++.+-.+. +..+.|.|- .++ ...+|++++.. .|+..|...+..
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~ts~~G-l~lm~e~l~-~a~--------~~~~P~V~~~~~R~g~~~g~~~~~~ 107 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTATSGPG-LNLMAEPLY-WAA--------GTELPIVIVVVQRAGPSPGLSTQPE 107 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEEEECCH-HHHHCCCHH-HHH--------HTT--EEEEEEEB---SSSB--SB-
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEeecCCc-ccccHhHHH-HHH--------HcCCCEEEEEEECCCCCCCCcCcCC
Confidence 677888999999999999999999999988876 445778765 445 46889888755 366666777777
Q ss_pred hhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----CCCcEEEEECcccc
Q psy10429 128 QCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLY 174 (207)
Q Consensus 128 ~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~~~P~~i~~~k~l~ 174 (207)
|.|.-..+ --++.|+.|+|++|+..+...|.+ ...||+++....+.
T Consensus 108 q~D~~~~~-d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~ 157 (230)
T PF01855_consen 108 QDDLMAAR-DSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC 157 (230)
T ss_dssp SHHHHHTT-TSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC
T ss_pred hhHHHHHH-hcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh
Confidence 88875555 568889999999999998887754 58999997765555
No 40
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.26 E-value=1.2e-05 Score=76.04 Aligned_cols=122 Identities=19% Similarity=0.220 Sum_probs=93.4
Q ss_pred ceeeccchhHHHHHHHHHHHhcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCch
Q psy10429 49 RVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQ 128 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs~ 128 (207)
-++.....|...+.+|.|.|++|.|.++.+-.+. +..+.|+|.. ++. + ..+.|++++..+++.++ +++..|
T Consensus 47 ~~~~~~~~E~~a~~~~~GAs~aG~ra~t~ts~~G-l~~~~e~l~~-~~~----~--g~~~~iV~~~~~~~gp~-~~~~~q 117 (595)
T TIGR03336 47 VYFEWSVNEKVAVEVAAGAAWSGLRAFCTMKHVG-LNVAADPLMT-LAY----T--GVKGGLVVVVADDPSMH-SSQNEQ 117 (595)
T ss_pred EEEEECcCHHHHHHHHHHHHhcCcceEEEccCCc-hhhhHHHhhh-hhh----h--cCcCceEEEEccCCCCc-cchhhH
Confidence 4677777999999999999999999999999876 5578999874 442 2 34889998887765444 445556
Q ss_pred hHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----CCCcEEEEECcccccccCCC
Q psy10429 129 CFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPM 180 (207)
Q Consensus 129 ~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~~~P~~i~~~k~l~~~~~~~ 180 (207)
.|.-+.+. -++.|+.|+|++|+..+...|.+ ..-||+++..+.+.+.+.++
T Consensus 118 ~d~~~~~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v 172 (595)
T TIGR03336 118 DTRHYAKF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDV 172 (595)
T ss_pred hHHHHHHh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeE
Confidence 66533333 47889999999999998888765 58899999888777666543
No 41
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.26 E-value=1.6e-05 Score=74.33 Aligned_cols=123 Identities=16% Similarity=0.166 Sum_probs=98.2
Q ss_pred CceeeccchhHHHHHHHHHHHhcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCc
Q psy10429 48 KRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHS 127 (207)
Q Consensus 48 ~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs 127 (207)
+-+++.+..|.-+..+|+|.+..|.+-.+.+-.+. +.+|.|.++ ++++. ..+-.++++..|.++ ..+.+.
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mKhVG-lNvAsDpl~-s~ay~------Gv~GGlviv~aDDpg--~~SSqn 127 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTMKHVG-LNVASDPLM-SLAYA------GVTGGLVIVVADDPG--MHSSQN 127 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEecccc-cccchhhhh-hhhhc------CccccEEEEEccCCC--cccccc
Confidence 78999999999999999999999999999999765 889999988 55543 356677777765443 111222
Q ss_pred hhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----CCCcEEEEECcccccccCCC
Q psy10429 128 QCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPM 180 (207)
Q Consensus 128 ~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~~~P~~i~~~k~l~~~~~~~ 180 (207)
+.|..++...-.+.|+.|+|+.|++.+++.+.+ ++-|+++|..+...+.++.+
T Consensus 128 eqdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V 184 (640)
T COG4231 128 EQDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDV 184 (640)
T ss_pred hhHhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeE
Confidence 235567778888889999999999999999986 58899999988888777654
No 42
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=98.18 E-value=4e-05 Score=68.13 Aligned_cols=126 Identities=21% Similarity=0.152 Sum_probs=92.0
Q ss_pred hhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC--CC
Q psy10429 41 LWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN--GA 118 (207)
Q Consensus 41 l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~--G~ 118 (207)
+.++++ ..|++ .-+|...+++|.|.|++|.|.++.+-.+. +...+|+|- -++ ...+|++++-.. |+
T Consensus 43 ~~~~~~-~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taTSg~G-l~lm~E~l~-~a~--------~~e~P~v~v~v~R~~p 110 (352)
T PRK07119 43 RLPEVG-GVFVQ-AESEVAAINMVYGAAATGKRVMTSSSSPG-ISLKQEGIS-YLA--------GAELPCVIVNIMRGGP 110 (352)
T ss_pred HHHHhC-CEEEe-eCcHHHHHHHHHHHHhhCCCEEeecCcch-HHHHHHHHH-HHH--------HccCCEEEEEeccCCC
Confidence 344563 56888 99999999999999999999999987755 456788764 344 468998887553 44
Q ss_pred CCCCCCCCchhHhHHHcC-----CCCcEEEeeCCHHHHHHHHHHHHc----CCCcEEEEECcccccccCC
Q psy10429 119 ASGVAAQHSQCFGAWFTQ-----CPGLKVVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYP 179 (207)
Q Consensus 119 ~~g~~~hhs~~~~a~~~~-----iPgl~v~~P~~~~e~~~ll~~a~~----~~~P~~i~~~k~l~~~~~~ 179 (207)
..|. ++..|.|.-+... --++.|+.|+|++|+..+...|.+ ..-|++++....+.+.+.+
T Consensus 111 ~~g~-t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~ 179 (352)
T PRK07119 111 GLGN-IQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEP 179 (352)
T ss_pred CCCC-CcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceee
Confidence 4343 5555666533321 335999999999999998887765 5779999988876655544
No 43
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=98.09 E-value=3.8e-05 Score=72.24 Aligned_cols=121 Identities=21% Similarity=0.225 Sum_probs=92.9
Q ss_pred ceeeccchhHHHHHHHHHHHhcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC--CCCCCCCCCC
Q psy10429 49 RVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN--GAASGVAAQH 126 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~--G~~~g~~~hh 126 (207)
-.+.-.=+|...+++|.|.|++|.|.++.+-.+.+. ...|.| .-++ ...+|+|++..+ |++.|..++.
T Consensus 238 ~~~~q~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~-lm~E~l-~~a~--------~~~~P~Vi~~~~R~gpstg~~t~~ 307 (562)
T TIGR03710 238 VVVVQAEDEIAAINMAIGASYAGARAMTATSGPGFA-LMTEAL-GLAG--------MTETPLVIVDVQRGGPSTGLPTKT 307 (562)
T ss_pred cEEEeeccHHHHHHHHHhHHhcCCceeecCCCCChh-HhHHHH-hHHH--------hccCCEEEEEcccCCCCCCCCCCc
Confidence 566677899999999999999999999999987754 567887 3333 468899998764 5555666777
Q ss_pred chhHhHHHcCC----CCcEEEeeCCHHHHHHHHHHHHc----CCCcEEEEECcccccccCC
Q psy10429 127 SQCFGAWFTQC----PGLKVVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYP 179 (207)
Q Consensus 127 s~~~~a~~~~i----Pgl~v~~P~~~~e~~~ll~~a~~----~~~P~~i~~~k~l~~~~~~ 179 (207)
.|.|.-..+.- -++.|+.|+|++|+..+...|.+ ..-||+++..+.+.+...+
T Consensus 308 eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~ 368 (562)
T TIGR03710 308 EQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYET 368 (562)
T ss_pred cHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCcee
Confidence 78776333322 24899999999999998777664 5889999988877655444
No 44
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=98.07 E-value=5.2e-05 Score=67.94 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=89.4
Q ss_pred CceeeccchhHHHHHHHHHHHhcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC--CCCCCCCCC
Q psy10429 48 KRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN--GAASGVAAQ 125 (207)
Q Consensus 48 ~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~--G~~~g~~~h 125 (207)
..|+.+= +|...+++|+|.|++|.|.++.+-.+.|+ .-.|+|-.. + ...+|++++... |++.|....
T Consensus 48 ~~~vq~E-~E~aA~~~a~GAs~aG~Ra~taTSg~G~~-lm~E~~~~a-~--------~~e~P~V~~~~~R~GpstG~p~~ 116 (375)
T PRK09627 48 GTFIQME-DEISGISVALGASMSGVKSMTASSGPGIS-LKAEQIGLG-F--------IAEIPLVIVNVMRGGPSTGLPTR 116 (375)
T ss_pred CEEEEcC-CHHHHHHHHHHHHhhCCCEEeecCCchHH-HHhhHHHHH-H--------hccCCEEEEEeccCCCcCCCCCc
Confidence 4455554 99999999999999999999999887654 356776533 2 469999987654 666665555
Q ss_pred CchhHhHHHc-----CCCCcEEEeeCCHHHHHHHHHHHHc----CCCcEEEEECcccccccCC
Q psy10429 126 HSQCFGAWFT-----QCPGLKVVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYP 179 (207)
Q Consensus 126 hs~~~~a~~~-----~iPgl~v~~P~~~~e~~~ll~~a~~----~~~P~~i~~~k~l~~~~~~ 179 (207)
..|.|.-..+ ..|-+ |+.|+|++|+..+...|.+ ..-|++++..+.+-+.+.+
T Consensus 117 ~~q~D~~~~~~~~hgd~~~i-vl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~ 178 (375)
T PRK09627 117 VAQGDVNQAKNPTHGDFKSI-ALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGK 178 (375)
T ss_pred cchHHHHHHhcCCCCCcCcE-EEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeee
Confidence 5666654444 55666 9999999999998887765 5789999988877665544
No 45
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=97.87 E-value=0.00024 Score=64.00 Aligned_cols=107 Identities=18% Similarity=0.116 Sum_probs=82.5
Q ss_pred cchhHHHHHHHHHHHhcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC--CCCCCCCCCCchhHh
Q psy10429 54 PITEIGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN--GAASGVAAQHSQCFG 131 (207)
Q Consensus 54 gIaE~~~vg~A~GlA~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~--G~~~g~~~hhs~~~~ 131 (207)
.=+|.+.+++|.|.|++|.|.++.+-.+.| ....|+|- .++ ...+|+|+.-.. |+ .+.+++..|.|.
T Consensus 55 ~E~E~aA~~~aiGAs~aGaRa~TaTSg~Gl-~lm~E~l~-~aa--------~~~lPiVi~~~~R~~p-~~~~~~~~q~D~ 123 (390)
T PRK08366 55 VESEHSAMAACIGASAAGARAFTATSAQGL-ALMHEMLH-WAA--------GARLPIVMVDVNRAMA-PPWSVWDDQTDS 123 (390)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEeeeCcccH-HHHhhHHH-HHH--------hcCCCEEEEEeccCCC-CCCCCcchhhHH
Confidence 349999999999999999999999998764 46788875 445 469998876542 33 355667677776
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHHHc----CCCcEEEEECcc
Q psy10429 132 AWFTQCPGLKVVSPYNSEDAKGLLKAAIR----DPDPVVFLENEL 172 (207)
Q Consensus 132 a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~~~P~~i~~~k~ 172 (207)
-..+. -|+.++.|+|++|+..+...|.+ ..-|++++..+.
T Consensus 124 ~~~~d-~g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~ 167 (390)
T PRK08366 124 LAQRD-TGWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAF 167 (390)
T ss_pred HHHhh-cCEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCc
Confidence 44443 48899999999999998877764 588999988653
No 46
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=97.83 E-value=0.00043 Score=65.62 Aligned_cols=155 Identities=15% Similarity=0.210 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhcCCc-EEEEecCCCccC---Cchhhchhhh---------hhcCCCceeeccchhHHHHHHHHHHHhcC
Q psy10429 5 DALNSALDEEMARDEK-VFLLGEEVALYD---GAYKVSRGLW---------KKYGDKRVLDTPITEIGFAGIAVGAAMAG 71 (207)
Q Consensus 5 ~a~~~~L~~~~~~~~~-vv~~~~D~~~~~---g~~~~~~~l~---------~~~g~~r~~~~gIaE~~~vg~A~GlA~~G 71 (207)
.+.++-|.+.++.|++ ..++++|--.++ +++..++... ..-|.+|+++ .++|....|.+.|+++.|
T Consensus 405 ~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~LtG 483 (793)
T COG3957 405 TALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYLLTG 483 (793)
T ss_pred HHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHHHhcC
Confidence 5788999999999998 999999975544 3444443321 1235689999 999999999999999999
Q ss_pred CccEEEechhhHHHHHHHHHHHHHhhh-------hhhccCCccCCEEEEeCCCCCC-C--CCCCCchhHh-HHHcCCCCc
Q psy10429 72 LRPVCEFMTFNFSMQAIDHIINSAAKT-------FYMSAGTVNVPIVFRGPNGAAS-G--VAAQHSQCFG-AWFTQCPGL 140 (207)
Q Consensus 72 ~~pi~~~~~~~~~~ra~dqi~~~~a~~-------~~~~~~~~~~pvvi~~~~G~~~-g--~~~hhs~~~~-a~~~~iPgl 140 (207)
.+-++..+-+|. +-.|...|+-+|+ .||-. ...++.++-+ +.-. + +-+||...++ .++...+++
T Consensus 484 r~glf~sYEaF~--~iv~sm~nQh~kwl~v~~e~~wr~~-~~Sln~l~TS--~vw~QdhNGfsHQdPgf~~~~~~k~~d~ 558 (793)
T COG3957 484 RHGLFASYEAFA--HIVDSMFNQHAKWLKVTREVEWRRP-IPSLNYLLTS--HVWRQDHNGFSHQDPGFIDHVANKKSDI 558 (793)
T ss_pred CccceeeHHHHH--HHHHHHHhhhHHHHHHHHhcccCCC-CCcccceeeh--hhhhcccCCCccCCchHHHHHHhhccCc
Confidence 999999987553 1233333343432 12221 2233333321 1111 1 2236654444 444455655
Q ss_pred -EEEeeCCHHHHHHHHHHHHcCCCcE
Q psy10429 141 -KVVSPYNSEDAKGLLKAAIRDPDPV 165 (207)
Q Consensus 141 -~v~~P~~~~e~~~ll~~a~~~~~P~ 165 (207)
.|+.|.|++.+..++.+|+++.+-.
T Consensus 559 vRvyfPpDaNtlLav~d~~l~s~n~i 584 (793)
T COG3957 559 VRVYFPPDANTLLAVYDHCLRSRNKI 584 (793)
T ss_pred eeEecCCCCcchhhhhhHHhhccCce
Confidence 8999999999999999999985544
No 47
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=97.80 E-value=0.00025 Score=64.24 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=84.9
Q ss_pred ceeeccchhHHHHHHHHHHHhcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC-CCCCCCc
Q psy10429 49 RVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS-GVAAQHS 127 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~-g~~~hhs 127 (207)
.|+.+= +|.+.++++.|.|++|.|.++.+-.+.+ ....|.|- .++ ...+|+|++....+.+ ....+..
T Consensus 58 ~~vq~E-~E~~A~~~~~GAs~aGaRa~TaTS~~Gl-~lm~E~l~-~aa--------~~~~P~V~~~~~R~~~~~~~i~~d 126 (407)
T PRK09622 58 EFVMVE-SEHAAMSACVGAAAAGGRVATATSSQGL-ALMVEVLY-QAS--------GMRLPIVLNLVNRALAAPLNVNGD 126 (407)
T ss_pred EEEeec-cHHHHHHHHHHHHhhCcCEEeecCcchH-HHHhhHHH-HHH--------HhhCCEEEEEeccccCCCcCCCch
Confidence 455544 9999999999999999999999988764 45788876 445 4699988876643322 3444555
Q ss_pred hhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcC------CCcEEEEECccc
Q psy10429 128 QCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRD------PDPVVFLENELL 173 (207)
Q Consensus 128 ~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~------~~P~~i~~~k~l 173 (207)
|.|.-. ..--|+.++.|+|++|+..+...|.+. .-|++++....+
T Consensus 127 ~~D~~~-~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~ 177 (407)
T PRK09622 127 HSDMYL-SRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFL 177 (407)
T ss_pred HHHHHH-HhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhh
Confidence 556533 345679999999999999998888653 689999887664
No 48
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.79 E-value=0.0021 Score=50.22 Aligned_cols=119 Identities=20% Similarity=0.210 Sum_probs=79.1
Q ss_pred hhchhhhh----hcCCCceeeccchhHHHHHHHHHHHhcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEE
Q psy10429 36 KVSRGLWK----KYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIV 111 (207)
Q Consensus 36 ~~~~~l~~----~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvv 111 (207)
.+.+.+.+ +. .-+++.+- .|++.+.+|.|.++.|.++.+.+..+. +..+.+.|. ++. ....||+
T Consensus 27 ~~~~~l~~~~~~~~-~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~gpG-~~n~~~~l~-~a~--------~~~~P~v 94 (160)
T cd07034 27 EIAETLAKAVLGEL-GGVVVQAE-SEHAAAEAAIGASAAGARAMTATSGPG-LNLMAEALY-LAA--------GAELPLV 94 (160)
T ss_pred HHHHHHHHHhccCC-CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeCcch-HHHHHHHHH-HHH--------hCCCCEE
Confidence 34455643 33 46788887 999999999999999888555666654 556788776 444 3479999
Q ss_pred EEeCCCCCCCCC---CCCc-hhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----CCCcEEEE
Q psy10429 112 FRGPNGAASGVA---AQHS-QCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----DPDPVVFL 168 (207)
Q Consensus 112 i~~~~G~~~g~~---~hhs-~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~~~P~~i~ 168 (207)
++..+-...+.+ ..|. .+...+++. -.-++.+.+++|+..+++.|++ .++|++++
T Consensus 95 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~ 157 (160)
T cd07034 95 IVVAQRPGPSTGLPKPDQSDLMAARYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVL 157 (160)
T ss_pred EEEeeCCCCCCCCCCcCcHHHHHHHhCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 887543333222 1222 122234433 5677889999999888877765 36899986
No 49
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=97.75 E-value=4.8e-05 Score=73.76 Aligned_cols=163 Identities=19% Similarity=0.250 Sum_probs=116.7
Q ss_pred HHHHHhcCCcEEEEecCCCc--------------cCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcC--Ccc
Q psy10429 11 LDEEMARDEKVFLLGEEVAL--------------YDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAG--LRP 74 (207)
Q Consensus 11 L~~~~~~~~~vv~~~~D~~~--------------~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G--~~p 74 (207)
...++.....+.+-|+|.++ .+..|.-...+....+.-.++|.+.+|.+++|.--|.+..- ...
T Consensus 576 fatll~eG~~iRlsGqDs~RGTF~hRHaVlhdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvlgFEYGYs~~~p~~lv 655 (906)
T COG0567 576 FATLLDEGHPIRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVLGFEYGYSLANPKTLV 655 (906)
T ss_pred ccceeccCCccccccccCCCcCccccceeeecccCccccChhhhcccccceEEEEechhhHHHHHhhhhhhhhcCCchhh
Confidence 34466677788888888753 11222223344444444568999999999999999999984 467
Q ss_pred EEEechhhHH---HHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCchhHhHHHcCC--CCcEEEeeCCHH
Q psy10429 75 VCEFMTFNFS---MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGAWFTQC--PGLKVVSPYNSE 149 (207)
Q Consensus 75 i~~~~~~~~~---~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs~~~~a~~~~i--Pgl~v~~P~~~~ 149 (207)
+++.|+.+|. +.-+||...+ +.. .| ...+.++..-|.|+-..+..|.|-.++.++..+ -||+|+.|++|.
T Consensus 656 lWEAQFGDFaNgAQvviDQfisS-ge~--KW--~r~sgLv~lLPHgyEGQGPEHSSaRlER~LQLcaE~NmqV~~pstpa 730 (906)
T COG0567 656 LWEAQFGDFANGAQVVIDQFISS-GEQ--KW--GRMSGLVMLLPHGYEGQGPEHSSARLERFLQLCAENNMQVVVPSTPA 730 (906)
T ss_pred hhhhhhcccccCCeeeecccccc-HHH--HH--HHhcCceEEccCCCCCCCCcCccchhHHHHHhhHHhCCEEEecCcHH
Confidence 8888888887 5667876522 222 22 356778888897776444445555677777666 499999999999
Q ss_pred HHHHHHHHHH-c-CCCcEEEEECcccccccC
Q psy10429 150 DAKGLLKAAI-R-DPDPVVFLENELLYGVQY 178 (207)
Q Consensus 150 e~~~ll~~a~-~-~~~P~~i~~~k~l~~~~~ 178 (207)
....+++.-+ + ...|.++..||.+.|.+.
T Consensus 731 q~fHlLRrq~~r~~rkPLiimtPKslLR~~~ 761 (906)
T COG0567 731 QYFHLLRRQALRDFRKPLIVMTPKSLLRHKL 761 (906)
T ss_pred HHHHHHHHHHhhcccCceEecChhhhhhccc
Confidence 9999988544 3 389999999999998654
No 50
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=97.70 E-value=0.0026 Score=51.07 Aligned_cols=155 Identities=9% Similarity=0.116 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcCC-cEEEEecCCCccCC---chhhchhh-h-hh--------cCCCceeeccchhHHHHHHHHHHHhc
Q psy10429 5 DALNSALDEEMARDE-KVFLLGEEVALYDG---AYKVSRGL-W-KK--------YGDKRVLDTPITEIGFAGIAVGAAMA 70 (207)
Q Consensus 5 ~a~~~~L~~~~~~~~-~vv~~~~D~~~~~g---~~~~~~~l-~-~~--------~g~~r~~~~gIaE~~~vg~A~GlA~~ 70 (207)
+++++-|.++++.|| +..++++|--.++. +|.+++.- . +. -++++-+..-++|....|...|+.+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 467888999999876 68899999866654 33333220 0 11 12245566779999999999999999
Q ss_pred CCccEEEechhhH--HHHHHHHHH---HHHhhhhhhccCCccCCEEEEeCCCCCCC-CC-CCCchhH-hHHHcCCCCc-E
Q psy10429 71 GLRPVCEFMTFNF--SMQAIDHII---NSAAKTFYMSAGTVNVPIVFRGPNGAASG-VA-AQHSQCF-GAWFTQCPGL-K 141 (207)
Q Consensus 71 G~~pi~~~~~~~~--~~ra~dqi~---~~~a~~~~~~~~~~~~pvvi~~~~G~~~g-~~-~hhs~~~-~a~~~~iPgl-~ 141 (207)
|..-++.++-+|. +.-.+.|-. .......||-. ...+|+++-+. ..-.. .| +||...+ ..++...|+. .
T Consensus 82 Grhglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~-~~SlN~l~TS~-~wrQdhNG~SHQdPgfi~~~~~k~~~~~R 159 (179)
T PF03894_consen 82 GRHGLFASYEAFAHIVDSMLNQHAKWLRHARELPWRAP-IPSLNYLLTSH-VWRQDHNGFSHQDPGFIDHVLNKKPDVVR 159 (179)
T ss_dssp T-EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS----B-EEEEEES--CCG-TTT-GGG---THHHHHHCC--T-EE
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHHhCcCCCC-CcceeEEeecc-ceecCCCCcccCCChHHHHHHhcCcccce
Confidence 9999999887664 122233321 11233444443 23344443322 11111 12 2544333 3666666665 8
Q ss_pred EEeeCCHHHHHHHHHHHHcC
Q psy10429 142 VVSPYNSEDAKGLLKAAIRD 161 (207)
Q Consensus 142 v~~P~~~~e~~~ll~~a~~~ 161 (207)
|+.|.|+.-+...+..|+++
T Consensus 160 vylPpDANtlLav~~~clrs 179 (179)
T PF03894_consen 160 VYLPPDANTLLAVMDHCLRS 179 (179)
T ss_dssp EEE-SSHHHHHHHHHHHHH-
T ss_pred eecCCcHhHHHHHHHHHhcC
Confidence 99999999999999998864
No 51
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=97.52 E-value=0.0012 Score=59.69 Aligned_cols=108 Identities=18% Similarity=0.116 Sum_probs=79.8
Q ss_pred cchhHHHHHHHHHHHhcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCCCCCCCchhHhH
Q psy10429 54 PITEIGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASGVAAQHSQCFGA 132 (207)
Q Consensus 54 gIaE~~~vg~A~GlA~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g~~~hhs~~~~a 132 (207)
.=+|.+.++++.|.|++|.|.++.+-.+. +....|+|- .++ ...+|++++... +.....+.|..|.|.-
T Consensus 56 ~EsE~aA~~~~~GAs~aGaRa~TaTS~~G-l~lm~E~l~-~aa--------g~~lP~V~vv~~R~~~~p~~i~~d~~D~~ 125 (394)
T PRK08367 56 VESEHSAISACVGASAAGVRTFTATASQG-LALMHEVLF-IAA--------GMRLPIVMAIGNRALSAPINIWNDWQDTI 125 (394)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEeeeccch-HHHHhhHHH-HHH--------HccCCEEEEECCCCCCCCCCcCcchHHHH
Confidence 34899999999999999999999999876 446788875 555 579998887642 2222334555666643
Q ss_pred HHcCCCCcEEEeeCCHHHHHHHHHHHHcC----C--CcEEEEECcc
Q psy10429 133 WFTQCPGLKVVSPYNSEDAKGLLKAAIRD----P--DPVVFLENEL 172 (207)
Q Consensus 133 ~~~~iPgl~v~~P~~~~e~~~ll~~a~~~----~--~P~~i~~~k~ 172 (207)
..+. -|+.++.|+|.+|+..+...|.+. + -|++++....
T Consensus 126 ~~rd-~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf 170 (394)
T PRK08367 126 SQRD-TGWMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAF 170 (394)
T ss_pred hccc-cCeEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechh
Confidence 3344 458889999999999988877652 2 5999988764
No 52
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.48 E-value=0.0024 Score=49.55 Aligned_cols=112 Identities=21% Similarity=0.138 Sum_probs=77.1
Q ss_pred CceeeccchhHHHHHHHHHHHhcC-CccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCC
Q psy10429 48 KRVLDTPITEIGFAGIAVGAAMAG-LRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAA 124 (207)
Q Consensus 48 ~r~~~~gIaE~~~vg~A~GlA~~G-~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~ 124 (207)
-|++.+ ..|++++.+|.|+++.+ ...++......-+..+.+.|. ++. ..+.|++++..+-... +...
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~-~A~--------~~~~Pll~i~~~~~~~~~~~~~ 104 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLA-NAY--------LDSIPLLVITGQRPTAGEGRGA 104 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHH-HHH--------hhCCCEEEEeCCCccccccCCc
Confidence 456655 49999999999999984 455555553445667788776 444 4599999987653322 2333
Q ss_pred CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----C-CCcEEEEEC
Q psy10429 125 QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----D-PDPVVFLEN 170 (207)
Q Consensus 125 hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~-~~P~~i~~~ 170 (207)
++..+...+++.+-.. .+...+++++...++.|++ . ++|+|+..|
T Consensus 105 ~q~~d~~~~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 105 FQEIDQVALFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred ccccCHHHHHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 4444556788888655 5666788888888777765 3 579999644
No 53
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=97.44 E-value=0.004 Score=60.97 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=108.0
Q ss_pred cHHHHHHHHHHHHHhcC---CcEEEEecCCCccCCchhhchhhhh------------------------hcCCCceeecc
Q psy10429 2 TVRDALNSALDEEMARD---EKVFLLGEEVALYDGAYKVSRGLWK------------------------KYGDKRVLDTP 54 (207)
Q Consensus 2 ~~~~a~~~~L~~~~~~~---~~vv~~~~D~~~~~g~~~~~~~l~~------------------------~~g~~r~~~~g 54 (207)
|.-.||..-|.++++.. ++||=+.+|.+... ++ +++-+ +-+..|.++.|
T Consensus 490 STt~afvr~l~~L~r~~~~g~riVpi~pDeartf---gm-~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~Gq~le~G 565 (885)
T TIGR00759 490 STTMAFVRILNKLLKDKEIGKRIVPIVPDEARTF---GM-EGLFRQIGIYSPHGQTYTPVDADSLLAYKESKDGQILQEG 565 (885)
T ss_pred cHHHHHHHHHHHHhcCcccccceeecCCCccccC---Ch-HHhhcccCccCCCCccCCccchhhhhhcccCCCCcchhhh
Confidence 44567888888888743 56999999986432 22 22211 22357999999
Q ss_pred chhHHHHHH--HHHHHhc--C--CccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEe-CCCCCC--CCCC-
Q psy10429 55 ITEIGFAGI--AVGAAMA--G--LRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRG-PNGAAS--GVAA- 124 (207)
Q Consensus 55 IaE~~~vg~--A~GlA~~--G--~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~-~~G~~~--g~~~- 124 (207)
|+|.+.++. |+|.|.+ | +.||.-.+..|-++|.-|.+- .++ .+..--.++| +.|.+. |.|.
T Consensus 566 I~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgfqR~gD~~w-aa~--------d~~argfl~g~taGrtTL~gEGlq 636 (885)
T TIGR00759 566 INEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQRIGDLCW-AAA--------DQRARGFLLGATAGRTTLNGEGLQ 636 (885)
T ss_pred hhhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccccchHHHHH-HHh--------hhcCCceEeccCCCcccCCCcccc
Confidence 999998874 5555554 5 489887777766899999764 666 3455444554 557743 4444
Q ss_pred CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----CCCcEEEEEC
Q psy10429 125 QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----DPDPVVFLEN 170 (207)
Q Consensus 125 hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~~~P~~i~~~ 170 (207)
|++.--.-+-..+||+.-+.|+...|+..+++..++ ...-+|.+.+
T Consensus 637 Hqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt 686 (885)
T TIGR00759 637 HEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVT 686 (885)
T ss_pred CccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 444333346789999999999999999999988876 3566777665
No 54
>KOG0451|consensus
Probab=97.44 E-value=0.0003 Score=65.22 Aligned_cols=167 Identities=19% Similarity=0.285 Sum_probs=118.4
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhh---------chh-------hh-hhcCCCceeeccchhHHHHHHH
Q psy10429 2 TVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKV---------SRG-------LW-KKYGDKRVLDTPITEIGFAGIA 64 (207)
Q Consensus 2 ~~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~---------~~~-------l~-~~~g~~r~~~~gIaE~~~vg~A 64 (207)
.|..|=..++-.++.+.-++-+.|+|++. |+|.- |++ +. .+-|.-.+-|..++|.+++|.-
T Consensus 565 DWaTAEAlA~GSll~qG~nVRiSGqDVGR--GTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFE 642 (913)
T KOG0451|consen 565 DWATAEALAIGSLLYQGHNVRISGQDVGR--GTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFE 642 (913)
T ss_pred chHHHHHHHHHHHHhccCceeeeccccCc--ccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhhhhhh
Confidence 46667777888999999999999999974 33311 111 11 0111245778999999999999
Q ss_pred HHHHhcC--CccEEEechhhHHHHHHHHHHH----HHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCch-hHhHHHcCC
Q psy10429 65 VGAAMAG--LRPVCEFMTFNFSMQAIDHIIN----SAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQ-CFGAWFTQC 137 (207)
Q Consensus 65 ~GlA~~G--~~pi~~~~~~~~~~ra~dqi~~----~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs~-~~~a~~~~i 137 (207)
-|||... ..++++.++.+|..-| ||.- ..+...|+. ...+++..|.|.. |.++.||. ..+.++..+
T Consensus 643 yGmsienP~~L~iWEAQFGDFfNGA--QIIiDTFi~sgE~KWl~----ssglvmLLPHGyD-GAgpeHSSCRiERFLQlC 715 (913)
T KOG0451|consen 643 YGMSIENPNNLIIWEAQFGDFFNGA--QIIIDTFIVSGETKWLE----SSGLVMLLPHGYD-GAGPEHSSCRIERFLQLC 715 (913)
T ss_pred cccccCCcccceeehhhhcccccCc--eEEEeeeecccchhhhh----hCCeEEEccCCcC-CCCCccchhhHHHHHHHh
Confidence 9999984 5899999999886422 3321 223344444 4467888887776 44454443 455665433
Q ss_pred -----------CCcEEEeeCCHHHHHHHHHHHH-c-CCCcEEEEECccccccc
Q psy10429 138 -----------PGLKVVSPYNSEDAKGLLKAAI-R-DPDPVVFLENELLYGVQ 177 (207)
Q Consensus 138 -----------Pgl~v~~P~~~~e~~~ll~~a~-~-~~~P~~i~~~k~l~~~~ 177 (207)
-||.|+-|.+|.+...++|.-+ + ..+|.++..||.|.|..
T Consensus 716 DS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlP 768 (913)
T KOG0451|consen 716 DSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLP 768 (913)
T ss_pred ccccccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhhCc
Confidence 5899999999999999998654 4 49999999999998764
No 55
>KOG0450|consensus
Probab=97.26 E-value=0.003 Score=60.10 Aligned_cols=161 Identities=21% Similarity=0.292 Sum_probs=115.7
Q ss_pred HHHHHHhcCCcEEEEecCCCccCCchh-----------------hchhhhhhcCCCceeeccchhHHHHHHHHHHHhc--
Q psy10429 10 ALDEEMARDEKVFLLGEEVALYDGAYK-----------------VSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-- 70 (207)
Q Consensus 10 ~L~~~~~~~~~vv~~~~D~~~~~g~~~-----------------~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-- 70 (207)
+.-.++++.-.|-+-|+|+.. |+|. -...|..+..+--+-|..++|-+.+|.-.|+|+.
T Consensus 658 AFgsLl~EG~hVRlSGQDVER--GTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sP 735 (1017)
T KOG0450|consen 658 AFGSLLKEGIHVRLSGQDVER--GTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASP 735 (1017)
T ss_pred HHHHHHhcCceEEeecccccc--cccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhheecceecccccCC
Confidence 445688889999999999953 3331 1223333333445779999999999999999998
Q ss_pred CCccEEEechhhHH---HHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCc-hhHhHHH------------
Q psy10429 71 GLRPVCEFMTFNFS---MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHS-QCFGAWF------------ 134 (207)
Q Consensus 71 G~~pi~~~~~~~~~---~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs-~~~~a~~------------ 134 (207)
...++++.||.+|. +.-+||.. ..+...| .....+|+..|.|.. |.|+.|| -..|.++
T Consensus 736 NaLVlWEAQFGDFaNtAQ~IiDQFI-ssGqaKW----~rqsGlVllLPHGye-G~GPEHSSaR~ERfLQm~nddp~~~p~ 809 (1017)
T KOG0450|consen 736 NALVLWEAQFGDFANTAQCIIDQFI-SSGQAKW----VRQSGLVLLLPHGYE-GMGPEHSSARPERFLQMSNDDPDVFPD 809 (1017)
T ss_pred CceEEeehhhccccccchhhHHhHh-ccchhhh----hhhcCeEEEccCCcC-CCCcccccccHHHHHHhccCCCccCCc
Confidence 56889999999887 55678876 3333322 345577888887776 5566554 2333332
Q ss_pred ------cCC--CCcEEEeeCCHHHHHHHHHHHHc--CCCcEEEEECcccccccC
Q psy10429 135 ------TQC--PGLKVVSPYNSEDAKGLLKAAIR--DPDPVVFLENELLYGVQY 178 (207)
Q Consensus 135 ------~~i--Pgl~v~~P~~~~e~~~ll~~a~~--~~~P~~i~~~k~l~~~~~ 178 (207)
+.+ =|++|+-+++|.....+||.-+. -.+|.+|+.||.|.|...
T Consensus 810 ~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~ 863 (1017)
T KOG0450|consen 810 EEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPE 863 (1017)
T ss_pred ccHHHHHHHhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCcc
Confidence 222 37899999999999999998775 489999999999998753
No 56
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.24 E-value=0.0011 Score=66.85 Aligned_cols=122 Identities=10% Similarity=-0.046 Sum_probs=88.7
Q ss_pred ceeeccchhHHHHHHHHHHH---------hcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCC
Q psy10429 49 RVLDTPITEIGFAGIAVGAA---------MAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAA 119 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A~GlA---------~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~ 119 (207)
-+++.++.|.-...++.|.+ ..|.+-+++.-.+. +.+|.|.++ ++++ +|.-.+-.|+++..|...
T Consensus 75 i~~e~~~NEkvA~e~a~Gaq~~~~~~~~~~~Gv~~l~~~K~~G-vnvaaD~l~-~~n~----~G~~~~GG~v~v~gDDpg 148 (1159)
T PRK13030 75 IRFLPGINEELAATAVLGTQQVEADPERTVDGVFAMWYGKGPG-VDRAGDALK-HGNA----YGSSPHGGVLVVAGDDHG 148 (1159)
T ss_pred eEEeecCCHHHHHHHHHHhccccccCCccccceEEEEecCcCC-cccchhHHH-HHHh----hcCCCCCcEEEEEecCCC
Confidence 79999999999999999999 55555588888865 889999998 4443 222235667777665333
Q ss_pred C--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----CCCcEEEEECcccccccCCC
Q psy10429 120 S--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPM 180 (207)
Q Consensus 120 ~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~~~P~~i~~~k~l~~~~~~~ 180 (207)
. +...|. ..++...-+|.|+.|+|+.|++.+.+++.+ ++-||.+|......+.+..+
T Consensus 149 ~~SSq~eqd----Sr~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V 211 (1159)
T PRK13030 149 CVSSSMPHQ----SDFALIAWHMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTV 211 (1159)
T ss_pred CccCcCHHH----HHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeE
Confidence 1 222222 234444556679999999999999998876 58899999887777766543
No 57
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=97.15 E-value=0.0045 Score=55.32 Aligned_cols=124 Identities=17% Similarity=0.186 Sum_probs=83.5
Q ss_pred hhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHHHHHHHHHHHHh-hhhhhccCCccCCEEEEeCC-C
Q psy10429 41 LWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSMQAIDHIINSAA-KTFYMSAGTVNVPIVFRGPN-G 117 (207)
Q Consensus 41 l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ra~dqi~~~~a-~~~~~~~~~~~~pvvi~~~~-G 117 (207)
+.++.++.|++ .--.|.+.+|+|+|+.+. |.+|++.+|... +..+.+.|. +++ .. -.++|++++..| |
T Consensus 20 ~~~~~~~~~~i-~~~~E~~av~iaaG~~latG~~~~v~mQnSG-lGn~vN~l~-SL~~~~------~y~iP~l~~i~~RG 90 (361)
T TIGR03297 20 ITDNNRDLRHV-IAANEGAAVGLAAGAYLATGKRAAVYMQNSG-LGNAVNPLT-SLADTE------VYDIPLLLIVGWRG 90 (361)
T ss_pred HHhcCCCceEE-ecCCchHHHHHHHHHHHhcCCccEEEEecCc-hhhhhhHHH-hhcccc------ccCcCeeEEEecCC
Confidence 34455333444 345699999999999999 999999999855 666888775 442 11 458899988776 4
Q ss_pred CCC-CCCCCCc---hhHhHHHcCCCCcEEEee-CCHHHHHH----HHHHHHcCCCcEEEEECcccc
Q psy10429 118 AAS-GVAAQHS---QCFGAWFTQCPGLKVVSP-YNSEDAKG----LLKAAIRDPDPVVFLENELLY 174 (207)
Q Consensus 118 ~~~-g~~~hhs---~~~~a~~~~iPgl~v~~P-~~~~e~~~----ll~~a~~~~~P~~i~~~k~l~ 174 (207)
... ...++|. .--..++..+ |++.... .+.+|+.. +++.+.+.+.|+.+...|...
T Consensus 91 ~~g~~depqh~~~G~~t~~lL~~~-~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 91 EPGVHDEPQHVKQGRITLSLLDAL-EIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred CCCCCCCchhhHHhHHHHHHHHHc-CCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 432 2245553 3345777766 6655555 55655554 555556679999998887665
No 58
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=97.07 E-value=0.0084 Score=47.59 Aligned_cols=129 Identities=22% Similarity=0.149 Sum_probs=77.4
Q ss_pred hhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEe
Q psy10429 36 KVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRG 114 (207)
Q Consensus 36 ~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~ 114 (207)
.+.+.+.+.-+ -|++. .-.|++++.+|.|+|+.+-+|-+.+... .-+..+..-|.+ ++ ..+.||+++.
T Consensus 29 ~l~~al~~~~~-i~~i~-~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l~~--A~-------~~~~Pvl~i~ 97 (172)
T PF02776_consen 29 PLLDALEKSPG-IRFIP-VRHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGLAN--AY-------ADRIPVLVIT 97 (172)
T ss_dssp HHHHHHHHTTT-SEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHHHH--HH-------HTT-EEEEEE
T ss_pred HHHHHhhhhcc-eeeec-ccCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHHhh--cc-------cceeeEEEEe
Confidence 34455655532 46665 6899999999999998755555544432 233344444432 22 4589999887
Q ss_pred CCCCCC--CCCCCC-chhHhHHHcCCCCcEEEeeCCHHHHHHHHH----HH-HcCCCcEEEEECcccccc
Q psy10429 115 PNGAAS--GVAAQH-SQCFGAWFTQCPGLKVVSPYNSEDAKGLLK----AA-IRDPDPVVFLENELLYGV 176 (207)
Q Consensus 115 ~~G~~~--g~~~hh-s~~~~a~~~~iPgl~v~~P~~~~e~~~ll~----~a-~~~~~P~~i~~~k~l~~~ 176 (207)
.+-... +.+..| ..+..++++.+-.. ...+.+++++...++ .| ...++|++|-.|+.+...
T Consensus 98 g~~~~~~~~~~~~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv~~~ 166 (172)
T PF02776_consen 98 GQRPSAGEGRGAFQQEIDQQSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDVQEA 166 (172)
T ss_dssp EESSGGGTTTTSTTSSTHHHHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHHHTS
T ss_pred cccchhhhcccccccchhhcchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhHhhC
Confidence 542222 323333 55567888888644 555566666555444 44 346999999887665543
No 59
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=96.85 E-value=0.038 Score=43.72 Aligned_cols=112 Identities=21% Similarity=0.060 Sum_probs=68.7
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcCC-ccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCCC
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAGL-RPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASGV 122 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G~-~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g~ 122 (207)
|.+++..+. +=-..++.|+|++++.. ++++.+..-.-++-..+.+- .++ +.++|++++..+ +...-.
T Consensus 38 p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~~~~~el~-ta~--------~~~lpv~ivv~NN~~~~~~ 108 (172)
T cd02004 38 PRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGFSGMELE-TAV--------RYNLPIVVVVGNNGGWYQG 108 (172)
T ss_pred CCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhcCCHHHHH-HHH--------HcCCCEEEEEEECcccccc
Confidence 678887653 23345667778887753 66666653211112233332 344 578998777643 332100
Q ss_pred ----------C-----CCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 123 ----------A-----AQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 123 ----------~-----~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
. ..+..+..++.+.+ |++-+.-.+++|.+.+++++.+.++|++|-
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 168 (172)
T cd02004 109 LDGQQLSYGLGLPVTTLLPDTRYDLVAEAF-GGKGELVTTPEELKPALKRALASGKPALIN 168 (172)
T ss_pred hhhhhhhccCCCceeccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHcCCCEEEE
Confidence 0 01122345566665 778888889999999999999999999883
No 60
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=96.84 E-value=0.0036 Score=63.16 Aligned_cols=122 Identities=13% Similarity=-0.025 Sum_probs=90.3
Q ss_pred ceeeccchhHHHHHHH---------HHHHhcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCC
Q psy10429 49 RVLDTPITEIGFAGIA---------VGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAA 119 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A---------~GlA~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~ 119 (207)
-+|+.++.|.-...++ .|.+..|.+.+++.-.+. +.+|.|.++ ++++ +|.-.+-.|+++..|...
T Consensus 83 i~fe~~~NEkvAae~~~GsQ~~~~~~~a~~~Gv~~l~y~K~pG-vn~aaD~l~-~~n~----~G~~~~GGvv~v~gDDpg 156 (1165)
T PRK09193 83 IVFQPGLNEDLAATAVWGSQQVNLFPGAKYDGVFGMWYGKGPG-VDRSGDVFR-HANA----AGTSPHGGVLALAGDDHA 156 (1165)
T ss_pred eEEeeccCHHHHHHHHhhhcccccccceeeccceEEEecCcCC-ccccHhHHH-HHHh----hcCCCCCcEEEEEecCCC
Confidence 7999999999999999 777999999999999975 889999998 3442 222235567777665333
Q ss_pred --CCCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----CCCcEEEEECcccccccCCC
Q psy10429 120 --SGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPM 180 (207)
Q Consensus 120 --~g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~~~P~~i~~~k~l~~~~~~~ 180 (207)
++...|+| .++...-+|.|+.|+|+.|++.+.+++.+ ++-||.++......+.+..+
T Consensus 157 ~~SSq~eqdS----r~~~~~a~iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V 219 (1165)
T PRK09193 157 AKSSTLPHQS----EHAFKAAGMPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASV 219 (1165)
T ss_pred Cccccchhhh----HHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeE
Confidence 22223332 33344446669999999999999998875 58899999887777666443
No 61
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=96.68 E-value=0.064 Score=42.13 Aligned_cols=144 Identities=15% Similarity=0.098 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEechh-h
Q psy10429 4 RDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTF-N 82 (207)
Q Consensus 4 ~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~-~ 82 (207)
|+.+.+.|.+.+ + ..+++. |.+. . .. .-+....+|.+|+..|--- .-++.|.|+++.-.+|++.+..- .
T Consensus 1 ~~~~~~~l~~~l-~-d~~vv~--d~G~---~-~~-~~~~~~~~~~~~~~~gsmG-~~lp~AiGa~~a~~~~Vv~i~GDG~ 70 (157)
T cd02001 1 RIAAIAEIIEAS-G-DTPIVS--TTGY---A-SR-ELYDVQDRDGHFYMLGSMG-LAGSIGLGLALGLSRKVIVVDGDGS 70 (157)
T ss_pred CHHHHHHHHHhC-C-CCEEEe--CCCH---h-HH-HHHHhhcCCCCEEeecchh-hHHHHHHHHHhcCCCcEEEEECchH
Confidence 345666777777 3 334333 3331 1 11 1133323367888633321 23347777777644788777642 2
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCc-cCCEEEEeC-CCCCC--CC-CCCC-chhHhHHHcCCCCcEEEeeCCHHHHHHHHH
Q psy10429 83 FSMQAIDHIINSAAKTFYMSAGTV-NVPIVFRGP-NGAAS--GV-AAQH-SQCFGAWFTQCPGLKVVSPYNSEDAKGLLK 156 (207)
Q Consensus 83 ~~~ra~dqi~~~~a~~~~~~~~~~-~~pvvi~~~-~G~~~--g~-~~hh-s~~~~a~~~~iPgl~v~~P~~~~e~~~ll~ 156 (207)
|.+- ...+- -++ +. ++|++++.- ++... +. ..++ ..++.++.+.+ |++-+...+++|.+..++
T Consensus 71 f~m~-~~el~-t~~--------~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~ 139 (157)
T cd02001 71 LLMN-PGVLL-TAG--------EFTPLNLILVVLDNRAYGSTGGQPTPSSNVNLEAWAAAC-GYLVLSAPLLGGLGSEFA 139 (157)
T ss_pred HHhc-ccHHH-HHH--------HhcCCCEEEEEEeCccccccCCcCCCCCCCCHHHHHHHC-CCceEEcCCHHHHHHHHH
Confidence 2222 22222 223 34 588877764 34321 11 1122 23445555555 777777799999999999
Q ss_pred HHHcCCCcEEEE
Q psy10429 157 AAIRDPDPVVFL 168 (207)
Q Consensus 157 ~a~~~~~P~~i~ 168 (207)
.+++.++|++|-
T Consensus 140 ~a~~~~gp~vi~ 151 (157)
T cd02001 140 GLLATTGPTLLH 151 (157)
T ss_pred HHHhCCCCEEEE
Confidence 999999999874
No 62
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.64 E-value=0.098 Score=41.24 Aligned_cols=107 Identities=22% Similarity=0.309 Sum_probs=68.0
Q ss_pred cchhHHHHHHHHHHHhcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCCCCC-C--Cchh
Q psy10429 54 PITEIGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASGVAA-Q--HSQC 129 (207)
Q Consensus 54 gIaE~~~vg~A~GlA~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g~~~-h--hs~~ 129 (207)
...|+..+++|+|..+.|.+|.+.++.+... .+..-|..-. . ..+.||+++..+ |...-..+ | +...
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~g-n~~~~l~~a~-~-------~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~ 110 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAILMQSSGLG-NSINALASLN-K-------TYGIPLPILASWRGVYKEKIPAQIPMGRA 110 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEEEEeCCcHH-HHHHHHHHHH-H-------cCCCCEEEEEeccCCCCCCCccccchhhh
Confidence 6788999999999999999999998887643 5666665322 1 358999988754 33211111 1 1111
Q ss_pred HhHHHcCCCCcEEEeeCCHHHHHHHHHHHH----cCCCcEEEEECc
Q psy10429 130 FGAWFTQCPGLKVVSPYNSEDAKGLLKAAI----RDPDPVVFLENE 171 (207)
Q Consensus 130 ~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~----~~~~P~~i~~~k 171 (207)
-+..+..+ ++......+++|+ ..++.|+ +.++|++|...|
T Consensus 111 ~~~~l~~~-~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~ 154 (157)
T TIGR03845 111 TPKLLDTL-GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDP 154 (157)
T ss_pred hHHHHHHc-CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeC
Confidence 12333332 3346666778888 7666655 457999998654
No 63
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=96.45 E-value=0.2 Score=39.91 Aligned_cols=116 Identities=20% Similarity=0.206 Sum_probs=70.4
Q ss_pred hhhhcCCCceeeccc-hh-HHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC
Q psy10429 41 LWKKYGDKRVLDTPI-TE-IGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN 116 (207)
Q Consensus 41 l~~~~g~~r~~~~gI-aE-~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~ 116 (207)
+..+. |.+++..+. .= -..++.|.|+++.. -++++.+..- .|.+. ...+. .+. +.++|++++..+
T Consensus 36 ~~~~~-~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~-~~el~-t~~--------~~~lp~~~iv~N 104 (178)
T cd02014 36 LRMNG-KQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAML-MGDLI-TAV--------KYNLPVIVVVFN 104 (178)
T ss_pred cccCC-CCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhh-HHHHH-HHH--------HhCCCcEEEEEE
Confidence 44445 467776543 22 22556777777654 3566665532 23333 22232 344 568888777553
Q ss_pred -CCCC---------CC---C-CCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 117 -GAAS---------GV---A-AQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 117 -G~~~---------g~---~-~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
|... +. + ..+..++.++.+.. |++.+...+++|.+..++++.+.++|++|-
T Consensus 105 N~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~~l~~a~~~~~p~lie 169 (178)
T cd02014 105 NSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAM-GIKGIRVEDPDELEAALDEALAADGPVVID 169 (178)
T ss_pred CCchhHHHHHHHHhcCCceeccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 4321 10 1 11223556777777 888889999999999999999999999884
No 64
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=96.41 E-value=0.11 Score=41.47 Aligned_cols=113 Identities=16% Similarity=0.173 Sum_probs=67.5
Q ss_pred cCCCcee-eccch-hHHHHHHHHHHHhcCCccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC
Q psy10429 45 YGDKRVL-DTPIT-EIGFAGIAVGAAMAGLRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS 120 (207)
Q Consensus 45 ~g~~r~~-~~gIa-E~~~vg~A~GlA~~G~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~ 120 (207)
..|.+++ +.|.. =-.-++.|.|+++.--+|++.+..- .|.+- ...+- .+. +.++|++++.-+ +...
T Consensus 39 ~~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GDGsf~m~-~~eL~-ta~--------~~~l~v~ivVlNN~~~g 108 (175)
T cd02009 39 DKTVRVFANRGASGIDGTLSTALGIALATDKPTVLLTGDLSFLHD-LNGLL-LGK--------QEPLNLTIVVINNNGGG 108 (175)
T ss_pred CCCceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEehHHHHHh-HHHHH-hcc--------ccCCCeEEEEEECCCCc
Confidence 3356777 44432 2235577777777645777766642 22222 22221 222 668998877543 3321
Q ss_pred --CCCCC--------------CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 --GVAAQ--------------HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 --g~~~h--------------hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
....+ +..++.++.+.+ |++-+.-.+++|.+.+++.+++.++|++|-
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 171 (175)
T cd02009 109 IFSLLPQASFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALAQDGPHVIE 171 (175)
T ss_pred hheeccCCcccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 00000 123445666665 677777889999999999999999999883
No 65
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.39 E-value=0.0075 Score=60.99 Aligned_cols=123 Identities=11% Similarity=-0.057 Sum_probs=89.8
Q ss_pred CceeeccchhHHH---------HHHHHHHHhcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCC
Q psy10429 48 KRVLDTPITEIGF---------AGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGA 118 (207)
Q Consensus 48 ~r~~~~gIaE~~~---------vg~A~GlA~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~ 118 (207)
+-+|+.++.|.-. +.++.|.+..|.+-+++.-.+. +.+|.|.+++..+. +...+-.|+++..|..
T Consensus 85 ~i~fe~~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwygK~pG-vn~aaD~l~h~n~~-----gt~~~GGvv~v~gDDp 158 (1186)
T PRK13029 85 DVVFQPGVNEELAATAVWGSQQLELDPGAKRDGVFGMWYGKGPG-VDRSGDALRHANLA-----GTSPLGGVLVLAGDDH 158 (1186)
T ss_pred ceEEeecCCHHHHHHHhhhhhhcccccceeeccceEEEecCcCC-cccchhHHHHhhcc-----ccCCCCcEEEEEecCC
Confidence 3799999999999 7788888889999999999975 88999999854321 1244556777766533
Q ss_pred C--CCCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----CCCcEEEEECcccccccCCC
Q psy10429 119 A--SGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----DPDPVVFLENELLYGVQYPM 180 (207)
Q Consensus 119 ~--~g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~~~P~~i~~~k~l~~~~~~~ 180 (207)
. ++...|+| .++...-+|.|+.|+|+.|++.+.+++.+ ++-||.++..+...+++..+
T Consensus 159 g~~SSq~eqdS----r~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V 222 (1186)
T PRK13029 159 GAKSSSVAHQS----DHTFIAWGIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASV 222 (1186)
T ss_pred CCccccCHHHH----HHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceee
Confidence 3 22223322 23333446669999999999999998875 58899999888777666443
No 66
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=96.35 E-value=0.16 Score=40.65 Aligned_cols=111 Identities=23% Similarity=0.181 Sum_probs=68.3
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|+..+- +=-..++.|.|+++.. -++++.+..- .|.+. ...|- .++ ..++|++++.-+ +...
T Consensus 40 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~~~-~~eL~-ta~--------~~~lpi~ivV~nN~~~~~ 109 (186)
T cd02015 40 PRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQMN-IQELA-TAA--------QYNLPVKIVILNNGSLGM 109 (186)
T ss_pred CCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHHhcc-HHHHH-HHH--------HhCCCeEEEEEECCccHH
Confidence 577886543 2223566788887764 3566655532 23332 33333 244 568898887653 4321
Q ss_pred ---------CC---CCC--CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 ---------GV---AAQ--HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 ---------g~---~~h--hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
+. ..+ +..++.++.+.+ |++-..-.+++|.+.+++.+.+.++|++|-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 170 (186)
T cd02015 110 VRQWQELFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALASDGPVLLD 170 (186)
T ss_pred HHHHHHHHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 111 123455666766 777778889999999999999999999984
No 67
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=96.33 E-value=0.13 Score=41.07 Aligned_cols=111 Identities=18% Similarity=0.078 Sum_probs=68.0
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhc-CCccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMA-GLRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~-G~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|+..+- +=-..++.|.|++++ .-++++.+..- .|.+- ...|. .+. +.++|++++.-+ +...
T Consensus 38 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m~-~~eL~-ta~--------~~~l~vi~vV~NN~~~g~ 107 (177)
T cd02010 38 PNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMMN-SQELE-TAV--------RLKIPLVVLIWNDNGYGL 107 (177)
T ss_pred CCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhH-HHHHH-HHH--------HHCCCeEEEEEECCcchH
Confidence 578887533 223345577777765 34667666642 22332 22232 233 568898887543 3321
Q ss_pred -C------CC-CC----CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 -G------VA-AQ----HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 -g------~~-~h----hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
. .. .. ...++.++.+.+ |++-+.-.+++|.+.+++++++.++|++|-
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 166 (177)
T cd02010 108 IKWKQEKEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALAADGVHVID 166 (177)
T ss_pred HHHHHHHhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 00 00 112445566666 788888899999999999999999999984
No 68
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.31 E-value=0.11 Score=41.06 Aligned_cols=124 Identities=16% Similarity=0.084 Sum_probs=76.9
Q ss_pred hhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEe
Q psy10429 36 KVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRG 114 (207)
Q Consensus 36 ~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~ 114 (207)
.+.+.+.+.- .=|++ ..-.|+++..+|-|+|+. |...++.....--+..+.--+. ++. ..+.||+++.
T Consensus 28 ~l~~al~~~~-~i~~v-~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l~-~A~--------~~~~Pvl~I~ 96 (164)
T cd07039 28 GLMDALRREG-KIEFI-QVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLY-DAK--------RDRAPVLAIA 96 (164)
T ss_pred HHHHHHhhcC-CCeEE-EeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHH-HHH--------hcCCCEEEEe
Confidence 3345554422 12444 567899999999999997 5433333332233444555544 222 5689999997
Q ss_pred CCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----CCCcEEEEECc
Q psy10429 115 PNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----DPDPVVFLENE 171 (207)
Q Consensus 115 ~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~~~P~~i~~~k 171 (207)
.+.... +.+.+|..+...+++.+-... ..+.+++++...++.|++ .++||||-.|.
T Consensus 97 g~~~~~~~~~~~~q~~d~~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 158 (164)
T cd07039 97 GQVPTDELGTDYFQEVDLLALFKDVAVYN-ETVTSPEQLPELLDRAIRTAIAKRGVAVLILPG 158 (164)
T ss_pred cCCcccccCCCCCcccCHHHHHHHhhcEE-EEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 654433 334555556678888887644 445577777777766654 47999997653
No 69
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=96.28 E-value=0.12 Score=44.71 Aligned_cols=102 Identities=18% Similarity=0.021 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhcC-CccEEEechhh-HHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCC-C-----------
Q psy10429 58 IGFAGIAVGAAMAG-LRPVCEFMTFN-FSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGV-A----------- 123 (207)
Q Consensus 58 ~~~vg~A~GlA~~G-~~pi~~~~~~~-~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~-~----------- 123 (207)
...+.+|.|++++. -++++.+..-. ...-.+..+. .++ +.++|++++.-+-..+|. +
T Consensus 62 G~alp~A~GaklA~Pd~~VV~i~GDG~~f~ig~~eL~-tA~--------rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~ 132 (279)
T PRK11866 62 GRVLPIATGVKWANPKLTVIGYGGDGDGYGIGLGHLP-HAA--------RRNVDITYIVSNNQVYGLTTGQASPTTPRGV 132 (279)
T ss_pred ccHHHHHHHHHHHCCCCcEEEEECChHHHHccHHHHH-HHH--------HHCcCcEEEEEEChhhhhhcccccCCCCCCc
Confidence 55677888887763 36666666532 3455677765 455 568888877543221111 0
Q ss_pred ----CCCc-----hhHhHHHc--CCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 124 ----AQHS-----QCFGAWFT--QCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 124 ----~hhs-----~~~~a~~~--~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
+... .+...+.+ .++.+....+.+++|++.+++.|++.++|++|-
T Consensus 133 ~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~~~Gps~I~ 188 (279)
T PRK11866 133 KTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIKHKGFSFID 188 (279)
T ss_pred eeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0000 13344444 445555667799999999999999999999873
No 70
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=96.16 E-value=0.11 Score=46.66 Aligned_cols=111 Identities=20% Similarity=0.186 Sum_probs=81.9
Q ss_pred ccchhHHHHHHHHHHHhcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC--CCCCCCCCCCchhH
Q psy10429 53 TPITEIGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN--GAASGVAAQHSQCF 130 (207)
Q Consensus 53 ~gIaE~~~vg~A~GlA~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~--G~~~g~~~hhs~~~ 130 (207)
--=+|.+.++++.|.++.|-|.+..+..+.|+ .-.+.+- .++ ...+|+++.-.. |++.+...+..|.|
T Consensus 52 q~EsE~~a~s~v~GA~~aGar~~TaTSg~Gl~-Lm~E~l~-~a~--------~~~~P~Vi~~~~R~~ps~g~p~~~dq~D 121 (365)
T COG0674 52 QMESEIGAISAVIGASYAGARAFTATSGQGLL-LMAEALG-LAA--------GTETPLVIVVAQRPLPSTGLPIKGDQSD 121 (365)
T ss_pred EeccHHHHHHHHHHHHhhCcceEeecCCccHH-HHHHHHH-HHH--------hccCCeEEEEeccCcCCCcccccccHHH
Confidence 34589999999999999999999999987654 3455553 444 579999988653 55556656777778
Q ss_pred hHHHcCCCCcEEEeeCCHHHHHHHHH----HHHcCCCcEEEEECcccc
Q psy10429 131 GAWFTQCPGLKVVSPYNSEDAKGLLK----AAIRDPDPVVFLENELLY 174 (207)
Q Consensus 131 ~a~~~~iPgl~v~~P~~~~e~~~ll~----~a~~~~~P~~i~~~k~l~ 174 (207)
.-..|.. |+.+++-+|.+|+..+.- .|.+..-|+++.....+.
T Consensus 122 ~~~~r~~-g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~ 168 (365)
T COG0674 122 LMAARDT-GFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLA 168 (365)
T ss_pred HHHHHcc-CceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchh
Confidence 7555655 998888889999887554 444567899987665444
No 71
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=95.97 E-value=0.11 Score=53.05 Aligned_cols=106 Identities=19% Similarity=0.134 Sum_probs=74.7
Q ss_pred cchhHHHHHHHHHHHhcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC--CCCCCCCCCCchhHh
Q psy10429 54 PITEIGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN--GAASGVAAQHSQCFG 131 (207)
Q Consensus 54 gIaE~~~vg~A~GlA~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~--G~~~g~~~hhs~~~~ 131 (207)
.=+|.+.++++.|.+.+|-+.++.+-++.++ .-.+.+- .++ ...+|+|+.... |...+.+.+-.+.|.
T Consensus 57 ~EsE~~A~~av~GA~~aGara~T~TSs~GL~-LM~e~l~-~~a--------g~~~P~Vi~va~R~~~~~~~~i~~dh~Dv 126 (1165)
T TIGR02176 57 MQSEAGAAGAVHGALQTGALTTTFTASQGLL-LMIPNMY-KIA--------GELLPCVFHVSARAIAAHALSIFGDHQDV 126 (1165)
T ss_pred ccchHHHHHHHHhHhhcCCCEEEecChhHHH-HHHHHHH-HHH--------hccCCEEEEEecCCCCCCCCccCCCchHH
Confidence 3489999999999999999998888877654 3355553 334 347899887653 333244444445565
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHH----HcCCCcEEEEEC
Q psy10429 132 AWFTQCPGLKVVSPYNSEDAKGLLKAA----IRDPDPVVFLEN 170 (207)
Q Consensus 132 a~~~~iPgl~v~~P~~~~e~~~ll~~a----~~~~~P~~i~~~ 170 (207)
-.+|.. |+.+++|++.+|+..+.-.| .+...|++.+..
T Consensus 127 ~~~R~~-G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~D 168 (1165)
T TIGR02176 127 MAARQT-GFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFD 168 (1165)
T ss_pred HHhhcC-CeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 444555 78999999999999865544 456889987544
No 72
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=95.95 E-value=0.12 Score=41.05 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=66.7
Q ss_pred ceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCC
Q psy10429 49 RVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQ 125 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~h 125 (207)
|++ ..-.|++.+.+|-|+|+. |..-++.....--+..+..-|. ++. ..+.||+++....... +.+.+
T Consensus 37 ~~v-~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~-~A~--------~~~~Pvl~i~g~~~~~~~~~~~~ 106 (162)
T cd07037 37 RLH-VRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVV-EAY--------YSGVPLLVLTADRPPELRGTGAN 106 (162)
T ss_pred eEE-eccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHH-HHH--------hcCCCEEEEECCCCHHhcCCCCC
Confidence 444 356899999999999997 5433433333333444555544 333 5689999987654432 34556
Q ss_pred CchhHhHHHcCCCCcE--EEeeCC-------HHHHHHHHHHHHcC-CCcEEEEE
Q psy10429 126 HSQCFGAWFTQCPGLK--VVSPYN-------SEDAKGLLKAAIRD-PDPVVFLE 169 (207)
Q Consensus 126 hs~~~~a~~~~iPgl~--v~~P~~-------~~e~~~ll~~a~~~-~~P~~i~~ 169 (207)
|..+..++++.+=... |-.|.+ +.....+++.|... ++|+++-.
T Consensus 107 q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 160 (162)
T cd07037 107 QTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNL 160 (162)
T ss_pred cccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEec
Confidence 6666667887775432 223444 34444555555444 68999853
No 73
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.94 E-value=0.54 Score=37.78 Aligned_cols=142 Identities=14% Similarity=0.134 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhh-hcCCCceeeccchhHHHHHHHHHHHhcCCccEEEechh-
Q psy10429 4 RDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWK-KYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTF- 81 (207)
Q Consensus 4 ~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~-~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~- 81 (207)
|+++.++|.+.+. ..+++. |.+... ..+.+ ...|.+++..|--= ..++.|.|++++--+|++.+..-
T Consensus 1 ~~~~~~~l~~~l~--d~iiv~--d~G~~~------~~~~~~~~~~~~~~~~gsmG-~~lpaAiGa~la~~~~Vv~i~GDG 69 (181)
T TIGR03846 1 RIDAIRAIASYLE--DELVVS--NIGVPS------KELYAIRDRPLNFYMLGSMG-LASSIGLGLALATDRTVIVIDGDG 69 (181)
T ss_pred CHHHHHHHHHhCC--CCEEEe--cCCHhH------HHHHhhhcCCCCeeeccccc-cHHHHHHHHHHcCCCcEEEEEcch
Confidence 4677788888883 344333 444211 12222 12256777644222 23457777777646667766642
Q ss_pred hHHHHHHHHHHHHHhhhhhhccCCcc-CCEEEEeCC-CCCCCCC----CC-CchhHhHHHcCCCCcEEEe-eCCHHHHHH
Q psy10429 82 NFSMQAIDHIINSAAKTFYMSAGTVN-VPIVFRGPN-GAASGVA----AQ-HSQCFGAWFTQCPGLKVVS-PYNSEDAKG 153 (207)
Q Consensus 82 ~~~~ra~dqi~~~~a~~~~~~~~~~~-~pvvi~~~~-G~~~g~~----~h-hs~~~~a~~~~iPgl~v~~-P~~~~e~~~ 153 (207)
.|.+ ....+- -++ ..+ .|++++.-+ +...-.+ .. ...++.++.+.+ |+.-.. ..+++|.+.
T Consensus 70 ~f~m-~~~el~-ta~--------~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~ 138 (181)
T TIGR03846 70 SLLM-NLGVLP-TIA--------AESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAA-GIRNVEKVADEEELRD 138 (181)
T ss_pred HHHh-hhhHHH-HHH--------HhCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHH
Confidence 2222 222222 233 446 588777643 3321111 11 123455666665 666555 789999999
Q ss_pred HHHHHHcCCCcEEEE
Q psy10429 154 LLKAAIRDPDPVVFL 168 (207)
Q Consensus 154 ll~~a~~~~~P~~i~ 168 (207)
+++ +++.++|++|-
T Consensus 139 al~-a~~~~~p~li~ 152 (181)
T TIGR03846 139 ALK-ALAMKGPTFIH 152 (181)
T ss_pred HHH-HHcCCCCEEEE
Confidence 998 88889999884
No 74
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=95.85 E-value=0.12 Score=39.91 Aligned_cols=111 Identities=24% Similarity=0.266 Sum_probs=69.6
Q ss_pred CCCceee--ccchhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC
Q psy10429 46 GDKRVLD--TPITEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS 120 (207)
Q Consensus 46 g~~r~~~--~gIaE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~ 120 (207)
.|.+|++ .--+=...++.|.|++++. -++++.+..- .|.+- ...|. .+. +.++|++++.-+ +...
T Consensus 17 ~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~-~~el~-ta~--------~~~~~v~~vv~nN~~~~ 86 (153)
T PF02775_consen 17 RPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMS-LQELA-TAV--------RYGLPVVIVVLNNGGYG 86 (153)
T ss_dssp STTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHH-GGGHH-HHH--------HTTSSEEEEEEESSBSH
T ss_pred CCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeec-cchhH-HHh--------hccceEEEEEEeCCcce
Confidence 3678887 3334556778888888873 3566665532 22332 33333 333 467888887543 3320
Q ss_pred ---------CCCC--------CCchhHhHHHcCCCCcEEEeeCCH--HHHHHHHHHHHcCCCcEEE
Q psy10429 121 ---------GVAA--------QHSQCFGAWFTQCPGLKVVSPYNS--EDAKGLLKAAIRDPDPVVF 167 (207)
Q Consensus 121 ---------g~~~--------hhs~~~~a~~~~iPgl~v~~P~~~--~e~~~ll~~a~~~~~P~~i 167 (207)
+... .+..++.++.+.+ |++.+.-.++ +|++..++++++.++|++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~~~gp~vI 151 (153)
T PF02775_consen 87 MTGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALESGGPAVI 151 (153)
T ss_dssp HHHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHHSSSEEEE
T ss_pred EeccccccCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHhCCCcEEE
Confidence 1101 3344566777777 8887775555 9999999999999999998
No 75
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=95.78 E-value=0.5 Score=44.12 Aligned_cols=116 Identities=13% Similarity=0.024 Sum_probs=75.5
Q ss_pred CceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCC--CCCCC
Q psy10429 48 KRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAA--SGVAA 124 (207)
Q Consensus 48 ~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~--~g~~~ 124 (207)
=|++.+- .|++...+|-|+|+. |...++...+.--+..++.-|. ++. ..+.||++++..... .+.+.
T Consensus 37 i~~i~~~-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl~-~A~--------~~~~Pvl~I~G~~~~~~~~~~~ 106 (539)
T TIGR02418 37 IELIVVR-HEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGLA-TAN--------SEGDPVVAIGGQVKRADLLKLT 106 (539)
T ss_pred CCEEEeC-cHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHHH-HHh--------hcCCCEEEEeCCCcccccccCc
Confidence 4677665 999999999999986 6444443333233444555544 222 568999988754332 24456
Q ss_pred CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----C-CCcEEEEECcccc
Q psy10429 125 QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----D-PDPVVFLENELLY 174 (207)
Q Consensus 125 hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~-~~P~~i~~~k~l~ 174 (207)
||..+..++++.+--... ...+++++...++.|++ . ++|+||-.|..+.
T Consensus 107 ~q~~d~~~~~~~~tk~~~-~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv~ 160 (539)
T TIGR02418 107 HQSMDNVALFRPITKYSA-EVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVV 160 (539)
T ss_pred ccccchhhhhhcceeeee-ecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhHh
Confidence 777777889998765433 33677777666665543 3 6899998886654
No 76
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.76 E-value=0.46 Score=44.79 Aligned_cols=126 Identities=18% Similarity=0.100 Sum_probs=78.2
Q ss_pred hchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeC
Q psy10429 37 VSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP 115 (207)
Q Consensus 37 ~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~ 115 (207)
+.+.+.+.- .-|++. .-.|++.+.+|-|+|+. |...++...+.--+..++.-|. ++. ..+.||++++.
T Consensus 33 l~~al~~~~-~i~~i~-~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl~-~A~--------~~~~Pvl~i~G 101 (574)
T PRK06466 33 IYDALFKQD-KVEHIL-VRHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGIA-TAY--------MDSIPMVVLSG 101 (574)
T ss_pred HHHHhhccC-CceEEE-eCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHH-HHH--------hcCCCEEEEec
Confidence 344553322 245654 47999999999999986 5444444333223444554443 222 57899999875
Q ss_pred CCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----C-CCcEEEEECcccc
Q psy10429 116 NGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----D-PDPVVFLENELLY 174 (207)
Q Consensus 116 ~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~-~~P~~i~~~k~l~ 174 (207)
..... +.+.+|..+...+++.+--.. ....+++++..+++.|++ . ++|+|+-.|..+.
T Consensus 102 ~~~~~~~~~~~~q~~d~~~l~~~itk~s-~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv~ 166 (574)
T PRK06466 102 QVPSTLIGEDAFQETDMVGISRPIVKHS-FMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDMT 166 (574)
T ss_pred CCCccccCCCcccccchhhhhhccceeE-EEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHh
Confidence 43332 334566556678888876643 334567777777766664 2 6999998887653
No 77
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=95.74 E-value=0.1 Score=50.11 Aligned_cols=151 Identities=15% Similarity=0.179 Sum_probs=98.0
Q ss_pred cHHHHHHHHHHHHHhcC---CcEEEEecCCCccCCc---h---hhchh--------------hhhhcCCCceeeccchhH
Q psy10429 2 TVRDALNSALDEEMARD---EKVFLLGEEVALYDGA---Y---KVSRG--------------LWKKYGDKRVLDTPITEI 58 (207)
Q Consensus 2 ~~~~a~~~~L~~~~~~~---~~vv~~~~D~~~~~g~---~---~~~~~--------------l~~~~g~~r~~~~gIaE~ 58 (207)
|.--||...|.+++++. ++||=+.+|.+..-|. | ++... +.++-+..+..+-||.|.
T Consensus 493 STtmAfvr~l~~llkdk~ig~riVpiipDearTfgmeg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ 572 (887)
T COG2609 493 STTMAFVRILNELLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQILQEGINEA 572 (887)
T ss_pred hhHHHHHHHHHHHHhccccCCccccccCchhhhccchhhhhhcccccCCCccCCccchhhhhhhhhCCCcchHHhhhccc
Confidence 34468889999998843 5689999998642211 0 00000 111222478899999999
Q ss_pred HHHHH--HHHHHhc--C--CccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCC-chh
Q psy10429 59 GFAGI--AVGAAMA--G--LRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQH-SQC 129 (207)
Q Consensus 59 ~~vg~--A~GlA~~--G--~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hh-s~~ 129 (207)
+.++. |+|.+.+ | +.||.-.++.|-++|.-|-+ ..++. +.--..++-+.-|.+. |.|.+| +..
T Consensus 573 ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfqRigD~~-waA~d-------q~ARgFLlgaTagrtTLngEGlqHedgh 644 (887)
T COG2609 573 GAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQRIGDLL-WAAGD-------QDARGFLLGATAGRTTLNGEGLQHEDGH 644 (887)
T ss_pred cHHHHHHHHhcccccCCccceeeeeeechhhhhhHHHHH-HHHHh-------hhhcceeEeecCCCceeCcccccccccc
Confidence 98874 5555553 5 48888777766688888865 46663 2333355555545553 444443 222
Q ss_pred HhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc
Q psy10429 130 FGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR 160 (207)
Q Consensus 130 ~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~ 160 (207)
-.=+-..+||+.-+.|+.++|..-++...++
T Consensus 645 S~l~~~~ip~~~tYdPafayEvAVI~~~g~~ 675 (887)
T COG2609 645 SHLQAMTIPNCISYDPAFAYEVAVIMQDGLR 675 (887)
T ss_pred chhhhhcCCCccccCchHHHHHHHHHHHHHH
Confidence 2224467899999999999999999998886
No 78
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=95.69 E-value=0.24 Score=39.17 Aligned_cols=111 Identities=19% Similarity=0.142 Sum_probs=64.2
Q ss_pred CCceeeccch-hHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC-
Q psy10429 47 DKRVLDTPIT-EIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG- 121 (207)
Q Consensus 47 ~~r~~~~gIa-E~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g- 121 (207)
|.+++..+-. =-..+..|.|++++- -++++.+..- .|.+ ....+. .+. +.++|++++..+ +...-
T Consensus 40 ~~~~~~~~~g~mG~~lp~aiGaala~~~~~vv~i~GDG~f~~-~~~el~-ta~--------~~~~p~~~iV~nN~~~~~~ 109 (178)
T cd02002 40 PGSYFTLRGGGLGWGLPAAVGAALANPDRKVVAIIGDGSFMY-TIQALW-TAA--------RYGLPVTVVILNNRGYGAL 109 (178)
T ss_pred CCCeeccCCccccchHHHHHHHHhcCCCCeEEEEEcCchhhc-cHHHHH-HHH--------HhCCCeEEEEEcCccHHHH
Confidence 5677765321 112355677777653 3555555531 2222 222332 333 458898887654 32110
Q ss_pred -------------------CCC-CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 122 -------------------VAA-QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 122 -------------------~~~-hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
... .+..+..++.+.+ |++-+.-.+++|.+..++++.+.++|++|-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~vi~ 175 (178)
T cd02002 110 RSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELDEALREALAEGGPALIE 175 (178)
T ss_pred HHHHHHHcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 000 1123445666666 777777788999999999999999999874
No 79
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=95.65 E-value=0.16 Score=39.48 Aligned_cols=99 Identities=24% Similarity=0.257 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCC-ccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCCC-------------
Q psy10429 59 GFAGIAVGAAMAGL-RPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASGV------------- 122 (207)
Q Consensus 59 ~~vg~A~GlA~~G~-~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g~------------- 122 (207)
..++.|.|+++... ++++.+..- .|.+ .++.+. .+. ..++|++++..+ +.....
T Consensus 50 ~~~~~a~Gaa~a~~~~~vv~~~GDG~~~~-~~~~l~-ta~--------~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~ 119 (168)
T cd00568 50 YGLPAAIGAALAAPDRPVVCIAGDGGFMM-TGQELA-TAV--------RYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVS 119 (168)
T ss_pred hhHHHHHHHHHhCCCCcEEEEEcCcHHhc-cHHHHH-HHH--------HcCCCcEEEEEECCccHHHHHHHHHHcCCCcc
Confidence 44567777777642 455555532 2222 444443 344 458888887654 332110
Q ss_pred -CCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 123 -AAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 123 -~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
...+..+..++.+.+ |++.....+++|.+.+++++.+.++|++|.
T Consensus 120 ~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~a~~~a~~~~~p~~i~ 165 (168)
T cd00568 120 GTDLSNPDFAALAEAY-GAKGVRVEDPEDLEAALAEALAAGGPALIE 165 (168)
T ss_pred cccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 111223456677775 888888889999999999999999999884
No 80
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=95.60 E-value=0.63 Score=37.98 Aligned_cols=111 Identities=17% Similarity=0.053 Sum_probs=65.4
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|+..+- +=-..++.|.|++++. -++++.+..- .|.+ ....+- .+. +.++|++++.-+ +...
T Consensus 38 ~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~m-~~~eL~-Ta~--------~~~lpv~ivV~NN~~~g~ 107 (205)
T cd02003 38 PGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLM-LHSEIV-TAV--------QEGLKIIIVLFDNHGFGC 107 (205)
T ss_pred CCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccchhhc-cHHHHH-HHH--------HcCCCCEEEEEECCccHH
Confidence 578886522 1123445677776653 3566655532 2333 222222 233 568888777543 3221
Q ss_pred --------CC---CC---------------CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 --------GV---AA---------------QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 --------g~---~~---------------hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
+. +. .+..++.++.+.+ |++-+.-.+++|++.+++.+++.++|++|-
T Consensus 108 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 180 (205)
T cd02003 108 INNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSL-GARVEKVKTIEELKAALAKAKASDRTTVIV 180 (205)
T ss_pred HHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 00 1123455666666 788888899999999999999999999873
No 81
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=95.59 E-value=0.31 Score=39.49 Aligned_cols=111 Identities=19% Similarity=0.170 Sum_probs=68.4
Q ss_pred CCceeeccc-h-hHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC
Q psy10429 47 DKRVLDTPI-T-EIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG 121 (207)
Q Consensus 47 ~~r~~~~gI-a-E~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g 121 (207)
|.+|+..+- . =-..+..|+|++++. -++++.+..- .|.+. ...|-+ ++ +.++|++++.-+ ++..-
T Consensus 43 ~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG~f~m~-~~eL~T-a~--------~~~lpvi~vV~NN~~yg~ 112 (196)
T cd02013 43 PRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDGAWGMS-MMEIMT-AV--------RHKLPVTAVVFRNRQWGA 112 (196)
T ss_pred CCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhcc-HHHHHH-HH--------HhCCCeEEEEEECchhHH
Confidence 578886422 1 133566778877653 3566665532 33443 333433 44 568998887643 33210
Q ss_pred --------CC------CCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc---CCCcEEEE
Q psy10429 122 --------VA------AQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR---DPDPVVFL 168 (207)
Q Consensus 122 --------~~------~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~---~~~P~~i~ 168 (207)
.+ ..+..++.++.+.+ |+.-+.-.+++|.+.+++++++ .++|++|-
T Consensus 113 ~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lie 175 (196)
T cd02013 113 EKKNQVDFYNNRFVGTELESESFAKIAEAC-GAKGITVDKPEDVGPALQKAIAMMAEGKTTVIE 175 (196)
T ss_pred HHHHHHHHcCCCcccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 00 11233445666666 7888888999999999999998 89999884
No 82
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=95.54 E-value=0.38 Score=41.73 Aligned_cols=141 Identities=17% Similarity=0.060 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchh---HHHHHHHHHHHhcC-CccEEEec
Q psy10429 4 RDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITE---IGFAGIAVGAAMAG-LRPVCEFM 79 (207)
Q Consensus 4 ~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE---~~~vg~A~GlA~~G-~~pi~~~~ 79 (207)
..++.++|.++-...++.+++ .|+|.+. +. + +++++.--- -..+.+|.|++++. -++++.+.
T Consensus 13 ~~~~~~a~~~l~~~p~d~iiv-sdiGc~~-----------~~-~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai~ 78 (287)
T TIGR02177 13 LSALQRALAELNLDPEQVVVV-SGIGCSA-----------KT-P-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVVG 78 (287)
T ss_pred HHHHHHHHHHhcCCCCCEEEE-ECCCccc-----------cc-C-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEEe
Confidence 457777887775544555444 4665221 12 3 455543321 34566888877764 36666665
Q ss_pred hh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCC-CCCC----------------------chhHhHHHc
Q psy10429 80 TF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGV-AAQH----------------------SQCFGAWFT 135 (207)
Q Consensus 80 ~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~-~~hh----------------------s~~~~a~~~ 135 (207)
.- +|..-....+. .++ +.++|++++.-+-..+|. +.++ .....++..
T Consensus 79 GDG~f~~mg~~eL~-tA~--------r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~ 149 (287)
T TIGR02177 79 GDGDLYGIGGNHFV-AAG--------RRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIAL 149 (287)
T ss_pred CchHHHhccHHHHH-HHH--------HhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhC
Confidence 31 22223344443 444 568898887543111110 0000 011224444
Q ss_pred CCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEE
Q psy10429 136 QCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVF 167 (207)
Q Consensus 136 ~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i 167 (207)
...-.-.....+++|++.+++.|++.++|++|
T Consensus 150 g~g~va~~~~~~~~eL~~ai~~Al~~~GpslI 181 (287)
T TIGR02177 150 GYTFVARGFSGDVAHLKEIIKEAINHKGYALV 181 (287)
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 44333233369999999999999999999987
No 83
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=95.52 E-value=0.79 Score=43.18 Aligned_cols=149 Identities=17% Similarity=0.117 Sum_probs=89.4
Q ss_pred HHHHHHHHhcC--CcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHH
Q psy10429 8 NSALDEEMARD--EKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFS 84 (207)
Q Consensus 8 ~~~L~~~~~~~--~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~ 84 (207)
.+.|.+.+++. ..+|.+-.+- ...+.+.+.+ . +-+++.+ ..|++.+.+|.|+|+. |...++...+.--+
T Consensus 19 ~~~i~~~L~~~Gv~~vFg~pG~~-----~~~l~~al~~-~-~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~ 90 (571)
T PRK07710 19 AQMLIEALEKEGVEVIFGYPGGA-----VLPLYDALYD-C-GIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGA 90 (571)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcc-----hHHHHHHHHh-c-CCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccH
Confidence 55666666655 3344332221 1133455543 3 3678866 8999999999999986 54444444332334
Q ss_pred HHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc--
Q psy10429 85 MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR-- 160 (207)
Q Consensus 85 ~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~-- 160 (207)
..++.-|. ++. ..+.||++++..-... +.+..|..+..++++.+--... ...+++++..+++.|++
T Consensus 91 ~N~~~gl~-~A~--------~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~-~v~~~~~~~~~i~~A~~~A 160 (571)
T PRK07710 91 TNVVTGLA-DAM--------IDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPVTKHNY-QVRKASDLPRIIKEAFHIA 160 (571)
T ss_pred HHHHHHHH-HHh--------hcCCCEEEEeccCCccccCCCCccccchhhhhhcccceEE-ecCCHHHHHHHHHHHHHHH
Confidence 44555444 322 5689999887543332 3344555566788888765544 34567777776666654
Q ss_pred --C-CCcEEEEECcccc
Q psy10429 161 --D-PDPVVFLENELLY 174 (207)
Q Consensus 161 --~-~~P~~i~~~k~l~ 174 (207)
. ++|+|+-.|..+.
T Consensus 161 ~~~~~GPV~l~iP~Dv~ 177 (571)
T PRK07710 161 TTGRPGPVLIDIPKDMV 177 (571)
T ss_pred hcCCCCcEEEEcChhHh
Confidence 3 6999998775443
No 84
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=95.51 E-value=0.2 Score=47.05 Aligned_cols=126 Identities=19% Similarity=0.095 Sum_probs=79.6
Q ss_pred hchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeC
Q psy10429 37 VSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP 115 (207)
Q Consensus 37 ~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~ 115 (207)
+.+.+.+.- .-|++.+ -.|+++..+|-|+|+. |...++.+.+.--+..+..-|. ++. ..+.||++++.
T Consensus 30 l~~~l~~~~-~i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i~-~A~--------~~~~Pvl~i~g 98 (558)
T TIGR00118 30 IYDALYNDS-GIEHILV-RHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGIA-TAY--------MDSIPMVVFTG 98 (558)
T ss_pred HHHHhhccC-CceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHH-HHH--------hcCCCEEEEec
Confidence 344554322 2355544 6899999999999986 6444444433333444555544 222 57999999876
Q ss_pred CCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcC-----CCcEEEEECcccc
Q psy10429 116 NGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRD-----PDPVVFLENELLY 174 (207)
Q Consensus 116 ~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~-----~~P~~i~~~k~l~ 174 (207)
.-... +.+.+|..+..++++.+=-..... .+++++..+++.|++. ++||||-.|..+.
T Consensus 99 ~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v-~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv~ 163 (558)
T TIGR00118 99 QVPTSLIGSDAFQEADILGITMPITKHSFQV-KSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDVT 163 (558)
T ss_pred CCCccccCCCCCcccChhhhhcCccceeEEe-CCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhhh
Confidence 43332 334455555668888776654443 5788888888777752 6899998886554
No 85
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.50 E-value=0.22 Score=46.93 Aligned_cols=150 Identities=19% Similarity=0.083 Sum_probs=90.9
Q ss_pred HHHHHHHHhcC--CcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHH
Q psy10429 8 NSALDEEMARD--EKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFS 84 (207)
Q Consensus 8 ~~~L~~~~~~~--~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~ 84 (207)
.+.|.+.+++. ..+|.+-.+. ...+.+.+.+.- .=|++. .-.|++...+|.|+|+. |...++...+.--+
T Consensus 7 a~~l~~~L~~~Gv~~vFgvpG~~-----~~~l~d~l~~~~-~i~~i~-~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~ 79 (574)
T PRK07979 7 AEMVVRSLIDQGVKQVFGYPGGA-----VLDIYDALHTVG-GIDHVL-VRHEQAAVHMADGLARATGEVGVVLVTSGPGA 79 (574)
T ss_pred HHHHHHHHHHcCCCEEEEccCcc-----hHHHHHHHHhcC-CceEEE-eCcHHHHHHHHHHHHHHhCCceEEEECCCccH
Confidence 45566666555 3344443221 113344443311 124554 46799999999999986 76666555433334
Q ss_pred HHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc--
Q psy10429 85 MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR-- 160 (207)
Q Consensus 85 ~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~-- 160 (207)
..+..-|. ++- ..+.||++++...... +.+.+|..+..++++.+=.... ...+++++...++.|++
T Consensus 80 ~n~l~gi~-~A~--------~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~-~v~~~~~~~~~l~~A~~~A 149 (574)
T PRK07979 80 TNAITGIA-TAY--------MDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSF-LVKQTEDIPQVLKKAFWLA 149 (574)
T ss_pred hhhHHHHH-HHh--------hcCCCEEEEECCCChhccCCCCCceecHHHHhhcccceEE-EeCCHHHHHHHHHHHHHHH
Confidence 44554443 222 5689999987543332 3445666666788888755333 34578888888887765
Q ss_pred ---CCCcEEEEECcccc
Q psy10429 161 ---DPDPVVFLENELLY 174 (207)
Q Consensus 161 ---~~~P~~i~~~k~l~ 174 (207)
.++|+||-.|..+.
T Consensus 150 ~~~~~GPv~l~iP~Dv~ 166 (574)
T PRK07979 150 ASGRPGPVVVDLPKDIL 166 (574)
T ss_pred ccCCCCcEEEEcChhhh
Confidence 36999998886554
No 86
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.50 E-value=0.71 Score=43.53 Aligned_cols=149 Identities=17% Similarity=0.105 Sum_probs=88.0
Q ss_pred HHHHHHHHhcC--CcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEec-hhhH
Q psy10429 8 NSALDEEMARD--EKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFM-TFNF 83 (207)
Q Consensus 8 ~~~L~~~~~~~--~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~-~~~~ 83 (207)
.+.|.+.+++. ..+|.+-.|- ...+.+.+.+.- .-|++.+ -.|++++.+|.|+|+. |...++... .+.
T Consensus 7 ~~~l~~~L~~~Gv~~vFgvpG~~-----~~~l~~al~~~~-~i~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG- 78 (572)
T PRK08979 7 ASMIVRSLIDEGVKHIFGYPGGS-----VLDIYDALHEKS-GIEHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPG- 78 (572)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcc-----hHHHHHHHhhcC-CCeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCch-
Confidence 45555555544 3344443221 113345554322 2367665 7999999999999986 654444443 433
Q ss_pred HHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc-
Q psy10429 84 SMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR- 160 (207)
Q Consensus 84 ~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~- 160 (207)
+..+..-|. ++- ..+.||++++...... +.+.+|..+..++++.+=-... ...+++++...++.|++
T Consensus 79 ~~n~l~gia-~A~--------~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~~~-~v~~~~~~~~~l~~A~~~ 148 (572)
T PRK08979 79 ATNTITGIA-TAY--------MDSIPMVVLSGQVPSNLIGNDAFQECDMIGISRPVVKHSF-LVKDAEDIPEIIKKAFYI 148 (572)
T ss_pred HhHHHHHHH-HHh--------hcCCCEEEEecCCCccccCCCCCcccchhHHhhhceeEEE-ecCCHHHHHHHHHHHHHH
Confidence 334554443 222 5689999887543322 3344555566688887655433 34468888877777765
Q ss_pred ----CCCcEEEEECcccc
Q psy10429 161 ----DPDPVVFLENELLY 174 (207)
Q Consensus 161 ----~~~P~~i~~~k~l~ 174 (207)
.++|+||-.|.-+.
T Consensus 149 A~~~~~GPV~l~iP~Dv~ 166 (572)
T PRK08979 149 ASTGRPGPVVIDLPKDCL 166 (572)
T ss_pred HhCCCCCcEEEecCHhHh
Confidence 36999998776543
No 87
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=95.42 E-value=0.86 Score=36.81 Aligned_cols=110 Identities=18% Similarity=0.150 Sum_probs=63.1
Q ss_pred CCceeeccchhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccC-CEEEEeC-CCCCC--
Q psy10429 47 DKRVLDTPITEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNV-PIVFRGP-NGAAS-- 120 (207)
Q Consensus 47 ~~r~~~~gIaE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~-pvvi~~~-~G~~~-- 120 (207)
|.+|+..|-- -..++.|.|+++.. -++++.+..- .|.+ ....+- .++ +.++ |++++.- ++...
T Consensus 41 ~~~~~~~g~m-G~~lpaAiGaala~p~~~Vv~i~GDG~f~m-~~~eL~-ta~--------~~~l~~i~ivV~NN~~yg~~ 109 (188)
T cd03371 41 AQDFLTVGSM-GHASQIALGIALARPDRKVVCIDGDGAALM-HMGGLA-TIG--------GLAPANLIHIVLNNGAHDSV 109 (188)
T ss_pred cCceeecCcc-ccHHHHHHHHHHhCCCCcEEEEeCCcHHHh-hccHHH-HHH--------HcCCCCcEEEEEeCchhhcc
Confidence 3778875332 22457777777653 3666666542 2222 222222 233 3454 5555543 34321
Q ss_pred CC--CCCCchhHhHHHcCCCCcEE-EeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 GV--AAQHSQCFGAWFTQCPGLKV-VSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 g~--~~hhs~~~~a~~~~iPgl~v-~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
+. ...+..++..+.+.+ |++- ....+++|.+.+++++++.++|++|.
T Consensus 110 ~~~~~~~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~~~~p~lIe 159 (188)
T cd03371 110 GGQPTVSFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALAADGPAFIE 159 (188)
T ss_pred CCcCCCCCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 11 111224556666666 6653 45679999999999999999999875
No 88
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.39 E-value=0.71 Score=43.82 Aligned_cols=152 Identities=16% Similarity=0.102 Sum_probs=91.6
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCccCCc-hhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHH
Q psy10429 7 LNSALDEEMARDEKVFLLGEEVALYDGA-YKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFS 84 (207)
Q Consensus 7 ~~~~L~~~~~~~~~vv~~~~D~~~~~g~-~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~ 84 (207)
..+.|.+.+++.---.++|- +|+. ..+.+.+.+.- .-|++.+ --|++.+.+|-|+|+. |...++...+.--+
T Consensus 13 ~a~~l~~~L~~~GV~~vFGv----pG~~~~~l~dal~~~~-~i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~ 86 (595)
T PRK09107 13 GAEMVVQALKDQGVEHIFGY----PGGAVLPIYDEIFQQD-DIQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGA 86 (595)
T ss_pred HHHHHHHHHHHCCCCEEEEc----cCcchHHHHHHHhhcC-CCeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccH
Confidence 36777777776643334432 1221 23445554322 2477766 7999999999999975 75555544433334
Q ss_pred HHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcC-
Q psy10429 85 MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRD- 161 (207)
Q Consensus 85 ~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~- 161 (207)
..+..-|. ++- ..+.||++++...... +.+.+|..+..++++.+=-.. ....+++++..+++.|++.
T Consensus 87 ~N~l~gia-~A~--------~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~-~~v~~~~~i~~~l~~A~~~A 156 (595)
T PRK09107 87 TNAVTPLQ-DAL--------MDSIPLVCITGQVPTHLIGSDAFQECDTVGITRPCTKHN-WLVKDVNDLARVIHEAFHVA 156 (595)
T ss_pred hHHHHHHH-HHh--------hcCCCEEEEEcCCChhhcCCCCCcccchhhhhhhheEEE-EEeCCHHHHHHHHHHHHHHh
Confidence 44554443 222 5689999887543332 334455555567777654332 2356788888888777763
Q ss_pred ----CCcEEEEECcccc
Q psy10429 162 ----PDPVVFLENELLY 174 (207)
Q Consensus 162 ----~~P~~i~~~k~l~ 174 (207)
++|+||-.|..+.
T Consensus 157 ~s~~~GPV~l~iP~Dv~ 173 (595)
T PRK09107 157 TSGRPGPVVVDIPKDVQ 173 (595)
T ss_pred cCCCCceEEEecCCChh
Confidence 7999998776554
No 89
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=95.38 E-value=0.87 Score=42.83 Aligned_cols=150 Identities=21% Similarity=0.147 Sum_probs=87.7
Q ss_pred HHHHHHHHhcCCcEEEEecCCCccCCc-hhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHH
Q psy10429 8 NSALDEEMARDEKVFLLGEEVALYDGA-YKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSM 85 (207)
Q Consensus 8 ~~~L~~~~~~~~~vv~~~~D~~~~~g~-~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ 85 (207)
.+.|.+.+++.-==.++|- .|+. ..+.+.+.+ - .-+++.+ -.|++.+.+|-|+|+. |...++...+.--+.
T Consensus 11 ~~~l~~~L~~~Gv~~vFgi----pG~~~~~l~~al~~-~-~i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~ 83 (561)
T PRK06048 11 ARAIIKCLEKEGVEVIFGY----PGGAIIPVYDELYD-S-DLRHILV-RHEQAAAHAADGYARATGKVGVCVATSGPGAT 83 (561)
T ss_pred HHHHHHHHHHcCCCEEEEC----CCcchHHHHHHHhh-C-CCeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHH
Confidence 4556665554422223321 2221 134455543 2 2467766 7999999999999986 644444433323344
Q ss_pred HHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc---
Q psy10429 86 QAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR--- 160 (207)
Q Consensus 86 ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~--- 160 (207)
.+..-|. ++. ..+.||++++...... +.+.+|..+..++++.+=-... .-.+++++..+++.|++
T Consensus 84 n~~~gl~-~A~--------~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~-~v~~~~~i~~~i~~A~~~A~ 153 (561)
T PRK06048 84 NLVTGIA-TAY--------MDSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKHNY-LVQDAKDLPRIIKEAFHIAS 153 (561)
T ss_pred HHHHHHH-HHh--------hcCCCEEEEeccCCccccCCCCccccchhhhccCcceEEE-EeCCHHHHHHHHHHHHHHHh
Confidence 4555554 323 5789999886543332 3334444455577777654333 34677887777777765
Q ss_pred --CCCcEEEEECcccc
Q psy10429 161 --DPDPVVFLENELLY 174 (207)
Q Consensus 161 --~~~P~~i~~~k~l~ 174 (207)
.++|+||-.|..+.
T Consensus 154 ~~~~GPV~l~iP~dv~ 169 (561)
T PRK06048 154 TGRPGPVLIDLPKDVT 169 (561)
T ss_pred cCCCCeEEEecChhhh
Confidence 36999998876544
No 90
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=95.36 E-value=0.74 Score=40.21 Aligned_cols=102 Identities=16% Similarity=0.018 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhc----CC-ccEEEech-hhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCC-------CCC
Q psy10429 58 IGFAGIAVGAAMA----GL-RPVCEFMT-FNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASG-------VAA 124 (207)
Q Consensus 58 ~~~vg~A~GlA~~----G~-~pi~~~~~-~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g-------~~~ 124 (207)
.+..++|.|++.. +. ++++.+.. ..+..-++..+. ++. ..+.+++++.-|-..++ .++
T Consensus 72 g~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~-~a~--------~r~~ni~~ivlDNe~Y~nTGgQ~S~~T 142 (299)
T PRK11865 72 ENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGFQSLS-GAM--------ERGHNILYLMYDNEAYMNTGIQRSGST 142 (299)
T ss_pred cchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHH-HHH--------HcCCCeEEEEECCccccCCCCCCCCCC
Confidence 3556777777665 33 24444442 134455676665 444 35677777644311111 000
Q ss_pred ---------C----------CchhHhHHH--cCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 125 ---------Q----------HSQCFGAWF--TQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 125 ---------h----------hs~~~~a~~--~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
. .-.+...++ ..+|-+..++|+++.|+...++.|++.++|.+|.
T Consensus 143 p~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~~Gps~I~ 207 (299)
T PRK11865 143 PFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKEVEGPAYIQ 207 (299)
T ss_pred CCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 012233444 7778888999999999999999999999999885
No 91
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=95.33 E-value=1.4 Score=37.02 Aligned_cols=111 Identities=12% Similarity=0.034 Sum_probs=65.9
Q ss_pred CCceeeccchhHHHHHHHHHHHhc----------CCccEEEechhhHH--HHHHHHHHHHHhhhhhhccCCccCCEEEEe
Q psy10429 47 DKRVLDTPITEIGFAGIAVGAAMA----------GLRPVCEFMTFNFS--MQAIDHIINSAAKTFYMSAGTVNVPIVFRG 114 (207)
Q Consensus 47 ~~r~~~~gIaE~~~vg~A~GlA~~----------G~~pi~~~~~~~~~--~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~ 114 (207)
+.++.+..+.-...+|.+...|+. --++++.+.. |.. .-.+..+-+. . ..++|++++.
T Consensus 52 ~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~G-DG~~~~~g~~~l~ta-~--------~~~l~i~ivV 121 (237)
T cd02018 52 AVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGG-DGATYDIGFGALSHS-L--------FRGEDITVIV 121 (237)
T ss_pred CCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcEEEEeC-chHHHhccHHHHHHH-H--------HcCCCeEEEE
Confidence 456677765555666666555542 1366776664 332 1244444433 2 3578888876
Q ss_pred CC-CCCC--C-CCC-----------------CCchhHhHHHcCCCCcEEE---eeCCHHHHHHHHHHHHc-CCCcEEEE
Q psy10429 115 PN-GAAS--G-VAA-----------------QHSQCFGAWFTQCPGLKVV---SPYNSEDAKGLLKAAIR-DPDPVVFL 168 (207)
Q Consensus 115 ~~-G~~~--g-~~~-----------------hhs~~~~a~~~~iPgl~v~---~P~~~~e~~~ll~~a~~-~~~P~~i~ 168 (207)
-+ +.+. + ... .+..++.++.+.+ |..-+ .+.+++|.+.+++++++ .++|++|-
T Consensus 122 lNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~-G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~ 199 (237)
T cd02018 122 LDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATH-GCVYVARLSPALKKHFLKVVKEAISRTDGPTFIH 199 (237)
T ss_pred ECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHC-CCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 54 3221 1 000 1122455566655 55444 59999999999999998 99999884
No 92
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=95.32 E-value=1 Score=42.00 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=74.0
Q ss_pred ceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCC-
Q psy10429 49 RVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAA- 124 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~- 124 (207)
|++ ..-.|++++.+|.|+|+. |...++...+..-+..++.-|. ++. ..+.||++++..-... +.+.
T Consensus 50 ~~i-~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gia-~A~--------~~~~Pvl~i~g~~~~~~~~~~~~ 119 (530)
T PRK07092 50 RYV-LGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNLF-TAF--------KNHTPLVITAGQQARSILPFEPF 119 (530)
T ss_pred CEE-EEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHHH-HHh--------hcCCCEEEEecCCcccccCccch
Confidence 666 667999999999999996 5444443333333445555544 222 5689999886543322 2333
Q ss_pred CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----C-CCcEEEEECcccc
Q psy10429 125 QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----D-PDPVVFLENELLY 174 (207)
Q Consensus 125 hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~-~~P~~i~~~k~l~ 174 (207)
+|+.+..++++.+-...... .+++++..+++.|++ . ++|+||-.|.-+.
T Consensus 120 ~~~~d~~~l~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~~ 173 (530)
T PRK07092 120 LAAVQAAELPKPYVKWSIEP-ARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDDW 173 (530)
T ss_pred hcccCHHHhhcccccceeec-CCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHHh
Confidence 33334568899887766555 667787777766654 3 5899998776544
No 93
>PLN02470 acetolactate synthase
Probab=95.31 E-value=0.68 Score=43.79 Aligned_cols=150 Identities=19% Similarity=0.115 Sum_probs=89.1
Q ss_pred HHHHHHHHhcC--CcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHH
Q psy10429 8 NSALDEEMARD--EKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFS 84 (207)
Q Consensus 8 ~~~L~~~~~~~--~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~ 84 (207)
.+.|.+.+++. ..+|.+-.+- ...+.+.|.+.- .=|++.+ --|++.+.+|-|+|+. |..-++...+.--+
T Consensus 16 a~~l~~~L~~~GV~~vFg~pG~~-----~~~l~dal~~~~-~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~ 88 (585)
T PLN02470 16 ADILVEALEREGVDTVFAYPGGA-----SMEIHQALTRSN-CIRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGPGA 88 (585)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcc-----cHHHHHHHhccC-CceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccH
Confidence 45556666554 3333332221 113344553321 1467766 7899999999999986 64444434333334
Q ss_pred HHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcC-
Q psy10429 85 MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRD- 161 (207)
Q Consensus 85 ~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~- 161 (207)
..++.-|. ++- ..+.||++++...... +.+.+|..+..++++.+=.... ...+++++..+++.|++.
T Consensus 89 ~N~l~gia-~A~--------~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~-~v~~~~~i~~~l~~A~~~A 158 (585)
T PLN02470 89 TNLVTGLA-DAL--------LDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNY-LVMDVEDIPRVIREAFFLA 158 (585)
T ss_pred HHHHHHHH-HHH--------hcCCcEEEEecCCChhhcCCCcCcccchhhhhhhheEEEE-EcCCHHHHHHHHHHHHHHh
Confidence 44555544 222 5789999987543332 2344555555677777654332 345788888888877662
Q ss_pred ----CCcEEEEECcccc
Q psy10429 162 ----PDPVVFLENELLY 174 (207)
Q Consensus 162 ----~~P~~i~~~k~l~ 174 (207)
++||||-.|.-+.
T Consensus 159 ~s~~~GPV~l~iP~Dv~ 175 (585)
T PLN02470 159 SSGRPGPVLVDIPKDIQ 175 (585)
T ss_pred cCCCCCeEEEEecCchh
Confidence 6999998876543
No 94
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=95.30 E-value=0.38 Score=45.22 Aligned_cols=111 Identities=25% Similarity=0.198 Sum_probs=71.2
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcC-CccEEEech-hhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAG-LRPVCEFMT-FNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~~-~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|+..+- +=-..++.|.|++++. -++++.+.. ..|.+..-| |- .+. +.++|++++.-+ |...
T Consensus 409 ~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~~~~~e-L~-ta~--------~~~lpvi~vV~NN~~~g~ 478 (564)
T PRK08155 409 PRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQE-MA-TAA--------ENQLDVKIILMNNEALGL 478 (564)
T ss_pred CCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccchhhccHHH-HH-HHH--------HhCCCeEEEEEeCCcccc
Confidence 568887643 3344677888888764 245555553 233443322 33 334 568898877543 4221
Q ss_pred ---------CC---CC--CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 ---------GV---AA--QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 ---------g~---~~--hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
+. +. ++..++.++.+.+ |++-+...+++|....++.+++.++|++|-
T Consensus 479 ~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 539 (564)
T PRK08155 479 VHQQQSLFYGQRVFAATYPGKINFMQIAAGF-GLETCDLNNEADPQAALQEAINRPGPALIH 539 (564)
T ss_pred cHHHHHHhcCCCeeeccCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 11 1234566777777 899899999999999999999999999884
No 95
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=95.27 E-value=0.27 Score=46.12 Aligned_cols=154 Identities=17% Similarity=0.072 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCccCCc-hhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCcc-EEEechhhHH
Q psy10429 7 LNSALDEEMARDEKVFLLGEEVALYDGA-YKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRP-VCEFMTFNFS 84 (207)
Q Consensus 7 ~~~~L~~~~~~~~~vv~~~~D~~~~~g~-~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~p-i~~~~~~~~~ 84 (207)
..+.|.+.+++.-=-.++|- +|+. ..+.+.+.+ .+.=|++ ..-.|++.+.+|.|+|+.--+| ++...+.--+
T Consensus 10 ~~~~l~~~L~~~GV~~vFg~----pG~~~~~l~~al~~-~~~i~~v-~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~ 83 (557)
T PRK08199 10 GGQILVDALRANGVERVFCV----PGESYLAVLDALHD-ETDIRVI-VCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGA 83 (557)
T ss_pred HHHHHHHHHHHcCCCEEEeC----CCcchhHHHHHhhc-cCCCcEE-EeccHHHHHHHHHHHHHhcCCCEEEEeCCCccH
Confidence 35666666665433233322 2221 133344432 2112444 3467999999999999974444 3333332334
Q ss_pred HHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCC--CCCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc--
Q psy10429 85 MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAA--SGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR-- 160 (207)
Q Consensus 85 ~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~--~g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~-- 160 (207)
..++.-|. ++- ..+.||++++..-.. .+.+.+|..+..++++.+=...... .+++++..+++.|++
T Consensus 84 ~N~~~gi~-~A~--------~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v-~~~~~~~~~~~~A~~~A 153 (557)
T PRK08199 84 TNASIGVH-TAF--------QDSTPMILFVGQVARDFREREAFQEIDYRRMFGPMAKWVAEI-DDAARIPELVSRAFHVA 153 (557)
T ss_pred HHHHHHHH-HHh--------hcCCCEEEEecCCccccCCCCcccccCHHHhhhhhhceeeec-CCHHHHHHHHHHHHHHH
Confidence 44555443 222 578999988754333 2345566656668888776554444 677777777766654
Q ss_pred --C-CCcEEEEECcccccc
Q psy10429 161 --D-PDPVVFLENELLYGV 176 (207)
Q Consensus 161 --~-~~P~~i~~~k~l~~~ 176 (207)
. ++|+||-.|..+...
T Consensus 154 ~~~~~GPV~l~iP~dl~~~ 172 (557)
T PRK08199 154 TSGRPGPVVLALPEDVLSE 172 (557)
T ss_pred hcCCCCcEEEEcCHhHhhC
Confidence 3 689999888766543
No 96
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=95.24 E-value=0.27 Score=46.28 Aligned_cols=111 Identities=20% Similarity=0.139 Sum_probs=72.6
Q ss_pred ccchhHHHHHHHHHHHhc-CCccEEE-echhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCch
Q psy10429 53 TPITEIGFAGIAVGAAMA-GLRPVCE-FMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQ 128 (207)
Q Consensus 53 ~gIaE~~~vg~A~GlA~~-G~~pi~~-~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~ 128 (207)
....|++++.+|.|+|+. |...++. +..+. +..++.-|. ++- ..+.||++++...... +.+.+|..
T Consensus 48 ~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG-~~N~l~gi~-~A~--------~~~~Pvl~i~G~~~~~~~~~~~~q~~ 117 (572)
T PRK06456 48 LMRHEQAAAHAADGYARASGVPGVCTATSGPG-TTNLVTGLI-TAY--------WDSSPVIAITGQVPRSVMGKMAFQEA 117 (572)
T ss_pred EeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCC-HHHHHHHHH-HHH--------hhCCCEEEEecCCCccccCCCCcccc
Confidence 446799999999999987 5444444 34444 444555554 222 5689999987543332 33445555
Q ss_pred hHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc-----CCCcEEEEECcccc
Q psy10429 129 CFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR-----DPDPVVFLENELLY 174 (207)
Q Consensus 129 ~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~-----~~~P~~i~~~k~l~ 174 (207)
+..++++.+--...-. .+++++...++.|++ .++|+||-.|.-+.
T Consensus 118 d~~~i~~~~tk~~~~v-~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 167 (572)
T PRK06456 118 DAMGVFENVTKYVIGI-KRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDIF 167 (572)
T ss_pred chhhhhhccceeEEEe-CCHHHHHHHHHHHHHHHhcCCCCcEEEecChhHh
Confidence 5678888876655444 677787777766654 46999998876554
No 97
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.23 E-value=1.2 Score=41.84 Aligned_cols=150 Identities=17% Similarity=0.101 Sum_probs=87.6
Q ss_pred HHHHHHHHhcCCcEEEEecCCCccCCc-hhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHH
Q psy10429 8 NSALDEEMARDEKVFLLGEEVALYDGA-YKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSM 85 (207)
Q Consensus 8 ~~~L~~~~~~~~~vv~~~~D~~~~~g~-~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ 85 (207)
.+.|.+.+++.---.++|- +|+. ..+.+.+.+.- .-|++.+ -.|++.+.+|-|+|+. |...++...+.--+.
T Consensus 7 a~~l~~~L~~~GV~~vFg~----pG~~~~~l~~al~~~~-~i~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~ 80 (574)
T PRK06882 7 AEMVVQSLRDEGVEYVFGY----PGGSVLDIYDAIHTLG-GIEHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPGAT 80 (574)
T ss_pred HHHHHHHHHHcCCCEEEeC----CCcchHHHHHHHhhcC-CCeEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCccHH
Confidence 4566666665533233332 2221 13334453321 1356655 8999999999999987 544444433333344
Q ss_pred HHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc---
Q psy10429 86 QAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR--- 160 (207)
Q Consensus 86 ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~--- 160 (207)
.++.-|. ++. ..+.||++++...... +.+.+|..+...+++.+=-. .....+++++..+++.|++
T Consensus 81 N~l~~i~-~A~--------~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~ 150 (574)
T PRK06882 81 NAITGIA-TAY--------TDSVPLVILSGQVPSNLIGTDAFQECDMLGISRPVVKH-SFIVKNAEDIPSTIKKAFYIAS 150 (574)
T ss_pred HHHHHHH-HHh--------hcCCCEEEEecCCCccccCCCcccccchhhhhhcccce-EEEeCCHHHHHHHHHHHHHHHh
Confidence 4555544 222 5799999887543332 33445555566788876543 3445677777776766665
Q ss_pred --CCCcEEEEECccc
Q psy10429 161 --DPDPVVFLENELL 173 (207)
Q Consensus 161 --~~~P~~i~~~k~l 173 (207)
.++||||-.|..+
T Consensus 151 ~~~~GPV~l~iP~Dv 165 (574)
T PRK06882 151 TGRPGPVVIDIPKDM 165 (574)
T ss_pred cCCCCCEEEecCHHH
Confidence 3699999877554
No 98
>PRK08322 acetolactate synthase; Reviewed
Probab=95.23 E-value=0.29 Score=45.69 Aligned_cols=126 Identities=13% Similarity=0.049 Sum_probs=79.7
Q ss_pred hchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeC
Q psy10429 37 VSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP 115 (207)
Q Consensus 37 ~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~ 115 (207)
+.+.+.+ - .=|++ ....|+++..+|.|+|+. |...++...+.--+..++.-|. ++. ..+.||++++.
T Consensus 30 l~dal~~-~-~i~~i-~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i~-~A~--------~~~~Pll~i~g 97 (547)
T PRK08322 30 LLEALRD-S-SIKLI-LTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGVA-YAQ--------LGGMPMVAITG 97 (547)
T ss_pred HHHHHHh-c-CCcEE-EeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHHH-HHh--------hcCCCEEEEec
Confidence 4455532 2 23555 457999999999999997 5444444333233444555444 333 57999998875
Q ss_pred CCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----C-CCcEEEEECccccc
Q psy10429 116 NGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----D-PDPVVFLENELLYG 175 (207)
Q Consensus 116 ~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~-~~P~~i~~~k~l~~ 175 (207)
.-... +.+.+|..+..++++.+-. -.....+++++..+++.|++ . ++||+|-.|..+..
T Consensus 98 ~~~~~~~~~~~~q~~d~~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~ 163 (547)
T PRK08322 98 QKPIKRSKQGSFQIVDVVAMMAPLTK-WTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDIAA 163 (547)
T ss_pred cccccccCCCccccccHHHHhhhhee-EEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhhh
Confidence 43322 3345555566788888764 35566778888777776665 2 68999988876553
No 99
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=95.21 E-value=0.78 Score=43.13 Aligned_cols=151 Identities=18% Similarity=0.108 Sum_probs=89.0
Q ss_pred HHHHHHHHhcCCcEEEEecCCCccCC-chhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccE-EEechhhHHH
Q psy10429 8 NSALDEEMARDEKVFLLGEEVALYDG-AYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPV-CEFMTFNFSM 85 (207)
Q Consensus 8 ~~~L~~~~~~~~~vv~~~~D~~~~~g-~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi-~~~~~~~~~~ 85 (207)
.++|.+.+++.-=-.++|- +|+ ...+.+.|.+.- .=|++. ...|+++..+|.|+|+.--+|- +...+.--+.
T Consensus 16 ~~~l~~~L~~~GV~~vFgv----pG~~~~~l~dal~~~~-~i~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 89 (564)
T PRK08155 16 AELIVRLLERQGIRIVTGI----PGGAILPLYDALSQST-QIRHIL-ARHEQGAGFIAQGMARTTGKPAVCMACSGPGAT 89 (564)
T ss_pred HHHHHHHHHHcCCCEEEeC----CCcccHHHHHHHhccC-CceEEE-eccHHHHHHHHHHHHHHcCCCeEEEECCCCcHH
Confidence 5566666654432223322 122 123345554322 246776 7899999999999999744554 3333222344
Q ss_pred HHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc---
Q psy10429 86 QAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR--- 160 (207)
Q Consensus 86 ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~--- 160 (207)
.++.-|. ++. ..+.||++++..-... +.+.+|..+..++++.+--...-. .+++++..+++.|++
T Consensus 90 N~l~gl~-~A~--------~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~a~ 159 (564)
T PRK08155 90 NLVTAIA-DAR--------LDSIPLVCITGQVPASMIGTDAFQEVDTYGISIPITKHNYLV-RDIEELPQVISDAFRIAQ 159 (564)
T ss_pred HHHHHHH-HHH--------hcCCCEEEEeccCCcccccCCCccccchhhhhhccceEEEEc-CCHHHHHHHHHHHHHHHh
Confidence 4555554 333 5799999887542322 334455555667888776554443 477777777776655
Q ss_pred -C-CCcEEEEECcccc
Q psy10429 161 -D-PDPVVFLENELLY 174 (207)
Q Consensus 161 -~-~~P~~i~~~k~l~ 174 (207)
. ++|+||-.|.-+.
T Consensus 160 ~~~~GPV~i~iP~Dv~ 175 (564)
T PRK08155 160 SGRPGPVWIDIPKDVQ 175 (564)
T ss_pred cCCCCcEEEEcCHhHH
Confidence 3 6999998776544
No 100
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=95.20 E-value=1 Score=42.85 Aligned_cols=152 Identities=18% Similarity=0.114 Sum_probs=90.7
Q ss_pred HHHHHHHHhcCCcEEEEecCCCccCCc-hhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHH
Q psy10429 8 NSALDEEMARDEKVFLLGEEVALYDGA-YKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSM 85 (207)
Q Consensus 8 ~~~L~~~~~~~~~vv~~~~D~~~~~g~-~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ 85 (207)
.+.|.+.+++.---.++|- +|+. ..+.+.+.+.- .=+++.+ -.|++++.+|.|+|+. |...++...+.--+.
T Consensus 34 a~~l~~~L~~~GV~~vFgi----pG~~~~~l~dal~~~~-~i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 107 (612)
T PRK07789 34 AQAVVRSLEELGVDVVFGI----PGGAILPVYDPLFDST-KVRHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGAT 107 (612)
T ss_pred HHHHHHHHHHCCCCEEEEc----CCcchHHHHHHHhccC-CceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 5666666665533333332 2221 13334453321 1356654 7999999999999986 655454444333344
Q ss_pred HHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc---
Q psy10429 86 QAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR--- 160 (207)
Q Consensus 86 ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~--- 160 (207)
.++.-|. ++. ..+.||++++...... +.+.+|..+..++++.+--... ...+++++..+++.|++
T Consensus 108 N~l~gl~-~A~--------~~~~PllvI~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~-~v~~~~~i~~~l~~A~~~A~ 177 (612)
T PRK07789 108 NLVTPIA-DAN--------MDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPITKHNF-LVTDADDIPRVIAEAFHIAS 177 (612)
T ss_pred HHHHHHH-HHh--------hcCCCEEEEecCCCccccCCCcCcccchhhhhhcceeEEE-EcCCHHHHHHHHHHHHHHHh
Confidence 4554443 333 5789999987643332 3344555566688888765433 34678888877777665
Q ss_pred --CCCcEEEEECccccc
Q psy10429 161 --DPDPVVFLENELLYG 175 (207)
Q Consensus 161 --~~~P~~i~~~k~l~~ 175 (207)
.++||+|-.|..+..
T Consensus 178 ~~~~GPV~l~iP~Dv~~ 194 (612)
T PRK07789 178 TGRPGPVLVDIPKDALQ 194 (612)
T ss_pred cCCCceEEEEEccchhh
Confidence 269999988866543
No 101
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=95.12 E-value=0.47 Score=41.11 Aligned_cols=101 Identities=18% Similarity=-0.005 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcC-CccEEEechhh-HHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCC---CCC-C-------
Q psy10429 58 IGFAGIAVGAAMAG-LRPVCEFMTFN-FSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAA---SGV-A------- 123 (207)
Q Consensus 58 ~~~vg~A~GlA~~G-~~pi~~~~~~~-~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~---~g~-~------- 123 (207)
...++.|.|++++. -++++.+..-. ++.-....+. .++ +.++|++++.-+ +.. .+. +
T Consensus 72 G~alpaAiGaklA~Pd~~VV~i~GDG~~f~mg~~eL~-tA~--------r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~ 142 (286)
T PRK11867 72 GRALAIATGLKLANPDLTVIVVTGDGDALAIGGNHFI-HAL--------RRNIDITYILFNNQIYGLTKGQYSPTSPVGF 142 (286)
T ss_pred hcHHHHHHHHHHhCCCCcEEEEeCccHHHhCCHHHHH-HHH--------HhCCCcEEEEEeCHHHhhhcCccCCCCCCCc
Confidence 44566777877763 35666665422 2334455554 344 568888877443 111 110 0
Q ss_pred ----C-CCc----hhHhHHHcCCCC--cEEEeeCCHHHHHHHHHHHHcCCCcEEE
Q psy10429 124 ----A-QHS----QCFGAWFTQCPG--LKVVSPYNSEDAKGLLKAAIRDPDPVVF 167 (207)
Q Consensus 124 ----~-hhs----~~~~a~~~~iPg--l~v~~P~~~~e~~~ll~~a~~~~~P~~i 167 (207)
. +.. .+..++...... +......+++|++.+++.|++.++|++|
T Consensus 143 ~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~~~Gp~lI 197 (286)
T PRK11867 143 VTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAINHKGFSFV 197 (286)
T ss_pred ccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEE
Confidence 0 111 234455555533 2333688999999999999999999987
No 102
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=95.03 E-value=1.2 Score=42.39 Aligned_cols=154 Identities=20% Similarity=0.114 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCccCCc-hhhchhhhh--hcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhh
Q psy10429 7 LNSALDEEMARDEKVFLLGEEVALYDGA-YKVSRGLWK--KYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFN 82 (207)
Q Consensus 7 ~~~~L~~~~~~~~~vv~~~~D~~~~~g~-~~~~~~l~~--~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~ 82 (207)
..++|.+.+++..=-.++|- +|+. ..+.+.|.+ +-+.=||+.+ -.|++.+.+|.|.|+. |...++...+.-
T Consensus 21 ~~~~l~~~L~~~GV~~vFgi----pG~~~~~l~dal~~~~~~~~i~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GP 95 (616)
T PRK07418 21 GAYALMDSLKRHGVKHIFGY----PGGAILPIYDELYKAEAEGWLKHILV-RHEQGAAHAADGYARATGKVGVCFGTSGP 95 (616)
T ss_pred HHHHHHHHHHHcCCCEEEeC----cCcchHHHHHHHHhcccCCCceEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCc
Confidence 35566666665432223321 2222 133455542 1112467777 8999999999999986 544444433333
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc
Q psy10429 83 FSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR 160 (207)
Q Consensus 83 ~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~ 160 (207)
-+..++.-|. ++. ..+.||++++...... +.+.+|..+..++++.+--.. ....+++++..+++.|++
T Consensus 96 G~~n~l~gl~-~A~--------~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~~~~~vtk~~-~~v~~~~~i~~~l~~A~~ 165 (616)
T PRK07418 96 GATNLVTGIA-TAQ--------MDSVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHS-YVVRDPSDMARIVAEAFH 165 (616)
T ss_pred cHHHHHHHHH-HHH--------hcCCCEEEEecCCCccccCCCCcccccHHHHhhhcceeE-EEeCCHHHHHHHHHHHHH
Confidence 3444554443 333 5789999887544432 334454445567777664322 246677777777766665
Q ss_pred ----C-CCcEEEEECccccc
Q psy10429 161 ----D-PDPVVFLENELLYG 175 (207)
Q Consensus 161 ----~-~~P~~i~~~k~l~~ 175 (207)
. ++|+|+-.|..+..
T Consensus 166 ~A~~~~~GPv~l~iP~Dv~~ 185 (616)
T PRK07418 166 IASSGRPGPVLIDIPKDVGQ 185 (616)
T ss_pred HHhcCCCCcEEEecchhhhh
Confidence 3 59999988876553
No 103
>PRK08611 pyruvate oxidase; Provisional
Probab=94.92 E-value=1.9 Score=40.76 Aligned_cols=152 Identities=14% Similarity=0.087 Sum_probs=88.9
Q ss_pred HHHHHHHHhcC--CcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHH
Q psy10429 8 NSALDEEMARD--EKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFS 84 (207)
Q Consensus 8 ~~~L~~~~~~~--~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~ 84 (207)
.+.|.+.+++. ..+|.+-.+ ....+.+.+.+.-+.-|++. .-.|++++.+|.|+|+. |..-++...+.--+
T Consensus 7 ~~~l~~~L~~~GV~~vFgipG~-----~~~~l~dal~~~~~~i~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~ 80 (576)
T PRK08611 7 GEALVKLLQDWGIDHVYGIPGD-----SIDAVVDALRKEQDKIKFIQ-VRHEEVAALAAAAYAKLTGKIGVCLSIGGPGA 80 (576)
T ss_pred HHHHHHHHHHcCCCEEEecCCc-----chHHHHHHHHhcCCCCeEEE-eCcHHHHHHHHHHHHHHhCCceEEEECCCCcH
Confidence 45555655544 233333221 11234455643221235655 67899999999999986 54334333322334
Q ss_pred HHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHH----
Q psy10429 85 MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAA---- 158 (207)
Q Consensus 85 ~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a---- 158 (207)
..++.-|. ++. ..+.||++++..-... +.+.+|..+..++++.+--.. ....+++++..+++.|
T Consensus 81 ~N~l~gla-~A~--------~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~itk~~-~~v~~~~~~~~~l~~A~~~A 150 (576)
T PRK08611 81 IHLLNGLY-DAK--------MDHVPVLALAGQVTSDLLGTDFFQEVNLEKMFEDVAVYN-HQIMSAENLPEIVNQAIRTA 150 (576)
T ss_pred HHHHHHHH-HHh--------hcCCCEEEEecCCcccccCCCCccccCHHHHhhccccee-EEeCCHHHHHHHHHHHHHHH
Confidence 44555443 222 5789999987543332 334555556678899875443 3455777777666655
Q ss_pred HcCCCcEEEEECccccc
Q psy10429 159 IRDPDPVVFLENELLYG 175 (207)
Q Consensus 159 ~~~~~P~~i~~~k~l~~ 175 (207)
...++||||-.|..+..
T Consensus 151 ~~~~GPV~l~iP~Dv~~ 167 (576)
T PRK08611 151 YEKKGVAVLTIPDDLPA 167 (576)
T ss_pred hhCCCCEEEEeChhhhh
Confidence 44579999998876653
No 104
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.88 E-value=0.34 Score=45.79 Aligned_cols=148 Identities=14% Similarity=0.042 Sum_probs=89.3
Q ss_pred HHHHHHHHhcC--CcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEe-chhhH
Q psy10429 8 NSALDEEMARD--EKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEF-MTFNF 83 (207)
Q Consensus 8 ~~~L~~~~~~~--~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~-~~~~~ 83 (207)
.+.|.+.+++. ..+|.+-.+- ...+.+.+.+. .-|++. .-.|++.+.+|-|+|+. |..-++.. ..+.
T Consensus 18 a~~l~~~L~~~GV~~vFGipG~~-----~~~l~dal~~~--~i~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG- 88 (570)
T PRK06725 18 AGHVIQCLKKLGVTTVFGYPGGA-----ILPVYDALYES--GLKHIL-TRHEQAAIHAAEGYARASGKVGVVFATSGPG- 88 (570)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcc-----hHHHHHHHHhc--CCcEEE-ecCHHHHHHHHHHHHHHhCCCeEEEECCCcc-
Confidence 46666666655 3344332221 11334555432 236665 45899999999999986 64444433 3433
Q ss_pred HHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcC
Q psy10429 84 SMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRD 161 (207)
Q Consensus 84 ~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~ 161 (207)
+..+..-|- ++- ..+.||++++...... +.+.+|..+...+++.+=-...- ..+++++..+++.|++.
T Consensus 89 ~~N~~~gla-~A~--------~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~-v~~~~~i~~~l~~A~~~ 158 (570)
T PRK06725 89 ATNLVTGLA-DAY--------MDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVTKHNYQ-VRDVNQLSRIVQEAFYI 158 (570)
T ss_pred HHHHHHHHH-HHh--------hcCcCEEEEecCCCcccccCCCCcccchhhhhhccceeEEE-cCCHHHHHHHHHHHHHH
Confidence 444554443 222 5689999887543332 33445555566888887654333 46788888888877763
Q ss_pred -----CCcEEEEECcccc
Q psy10429 162 -----PDPVVFLENELLY 174 (207)
Q Consensus 162 -----~~P~~i~~~k~l~ 174 (207)
++|||+-.|.-+.
T Consensus 159 A~s~~~GPV~l~iP~Dv~ 176 (570)
T PRK06725 159 AESGRPGPVLIDIPKDVQ 176 (570)
T ss_pred HhcCCCCcEEEccccchh
Confidence 7999998776554
No 105
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=94.83 E-value=0.37 Score=45.09 Aligned_cols=116 Identities=21% Similarity=0.140 Sum_probs=76.3
Q ss_pred CceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCC
Q psy10429 48 KRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAA 124 (207)
Q Consensus 48 ~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~ 124 (207)
=|++.+ ..|++.+.+|.|+|+. |...++...+.--+..++--+. ++. ..+.||++++..-... +.+.
T Consensus 39 i~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l~-~A~--------~~~~Pvl~i~g~~~~~~~~~~~ 108 (548)
T PRK08978 39 VEHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLA-DAL--------LDSVPVVAITGQVSSPLIGTDA 108 (548)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHH-HHh--------hcCCCEEEEecCCCccccCCCC
Confidence 356655 7999999999999997 6544444443333444555544 333 5689999987643332 3344
Q ss_pred CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc-----CCCcEEEEECcccc
Q psy10429 125 QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR-----DPDPVVFLENELLY 174 (207)
Q Consensus 125 hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~-----~~~P~~i~~~k~l~ 174 (207)
++..+..++++.+--..... .+++++..+++.|++ .++||||-.|..+.
T Consensus 109 ~q~~d~~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 162 (548)
T PRK08978 109 FQEIDVLGLSLACTKHSFLV-QSLEELPEIMAEAFEIASSGRPGPVLVDIPKDIQ 162 (548)
T ss_pred CcccchhccccCceeeEEEE-CCHHHHHHHHHHHHHHHhcCCCCcEEEecChhhh
Confidence 55555667888886655554 478888877777765 36999998776544
No 106
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=94.77 E-value=0.37 Score=45.39 Aligned_cols=150 Identities=17% Similarity=0.089 Sum_probs=89.6
Q ss_pred HHHHHHHHhcC--CcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHH
Q psy10429 8 NSALDEEMARD--EKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFS 84 (207)
Q Consensus 8 ~~~L~~~~~~~--~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~ 84 (207)
.+.|.+.+++. ..+|.+-.|- ...+.+.+.+. +.=|++. .-.|++.+.+|.|+|+. |...++.+.+.--+
T Consensus 13 ~~~i~~~L~~~Gv~~vFgipG~~-----~~~l~dal~~~-~~i~~i~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~ 85 (566)
T PRK07282 13 SDLVLETLRDLGVDTIFGYPGGA-----VLPLYDAIYNF-EGIRHIL-ARHEQGALHEAEGYAKSTGKLGVAVVTSGPGA 85 (566)
T ss_pred HHHHHHHHHHcCCCEEEecCCcc-----hHHHHHHHhhc-CCceEEE-ecCHHHHHHHHHHHHHHhCCCeEEEECCCccH
Confidence 56666666665 3344443221 11334555332 1236664 46899999999999986 65544444433334
Q ss_pred HHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcC-
Q psy10429 85 MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRD- 161 (207)
Q Consensus 85 ~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~- 161 (207)
..+..-|. ++- ..+.||++++...... +.+.+|..+..++++.+=..... ..+++++..+++.|++.
T Consensus 86 ~n~~~gla-~A~--------~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~-v~~~~~~~~~l~~A~~~A 155 (566)
T PRK07282 86 TNAITGIA-DAM--------SDSVPLLVFTGQVARAGIGKDAFQEADIVGITMPITKYNYQ-IRETADIPRIITEAVHIA 155 (566)
T ss_pred HHHHHHHH-HHh--------hcCCCEEEEecccccccCCCCCccccChhchhcCCCceeEE-cCCHHHHHHHHHHHHHHH
Confidence 44555544 222 5689999987543322 33445555566788877665543 35777777777776652
Q ss_pred ----CCcEEEEECcccc
Q psy10429 162 ----PDPVVFLENELLY 174 (207)
Q Consensus 162 ----~~P~~i~~~k~l~ 174 (207)
++|||+-.|.-+.
T Consensus 156 ~~~~~GPV~l~iP~Dv~ 172 (566)
T PRK07282 156 TTGRPGPVVIDLPKDVS 172 (566)
T ss_pred hcCCCCeEEEeCChhhh
Confidence 6999998776554
No 107
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.70 E-value=2.5 Score=40.08 Aligned_cols=151 Identities=19% Similarity=0.101 Sum_probs=86.2
Q ss_pred HHHHHHHHhcCCcEEEEecCCCccCCc-hhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHH
Q psy10429 8 NSALDEEMARDEKVFLLGEEVALYDGA-YKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSM 85 (207)
Q Consensus 8 ~~~L~~~~~~~~~vv~~~~D~~~~~g~-~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ 85 (207)
.+.|.+.+++.-=-.++|- .|+. ..+.+.+.+.- .-|++.+ --|++++.+|-|+|+. |..-++...+.--+.
T Consensus 24 a~~l~~~L~~~GV~~vFgv----pG~~~~~l~dal~~~~-~i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~ 97 (587)
T PRK06965 24 AEILMKALAAEGVEFIWGY----PGGAVLYIYDELYKQD-KIQHVLV-RHEQAAVHAADGYARATGKVGVALVTSGPGVT 97 (587)
T ss_pred HHHHHHHHHHcCCCEEEec----CCcchHHHHHHHhhcC-CCeEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHH
Confidence 4566666665433223331 1221 23345554322 2466665 7999999999999987 644444444333344
Q ss_pred HHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHH----
Q psy10429 86 QAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAI---- 159 (207)
Q Consensus 86 ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~---- 159 (207)
.+..-|. ++. ..+.||++++...... +.+.+|..+..++++.+=-.... ..+++++..+++.|+
T Consensus 98 N~l~gl~-~A~--------~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~-v~~~~~~~~~i~~A~~~A~ 167 (587)
T PRK06965 98 NAVTGIA-TAY--------MDSIPMVVISGQVPTAAIGQDAFQECDTVGITRPIVKHNFL-VKDVRDLAETVKKAFYIAR 167 (587)
T ss_pred HHHHHHH-HHh--------hcCCCEEEEecCCCccccCCCCcccccHHHHhcCCcceeEE-eCCHHHHHHHHHHHHHHHh
Confidence 4555443 222 5799999987654433 33345444556788887654333 445555555555444
Q ss_pred cC-CCcEEEEECcccc
Q psy10429 160 RD-PDPVVFLENELLY 174 (207)
Q Consensus 160 ~~-~~P~~i~~~k~l~ 174 (207)
.. ++||||-.|.-+.
T Consensus 168 ~~~~GPV~l~iP~Dv~ 183 (587)
T PRK06965 168 TGRPGPVVVDIPKDVS 183 (587)
T ss_pred cCCCCeEEEEeChhhh
Confidence 44 6999998876554
No 108
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=94.68 E-value=0.35 Score=38.53 Aligned_cols=98 Identities=22% Similarity=0.206 Sum_probs=54.1
Q ss_pred HHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC--CCC----------C-
Q psy10429 61 AGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS--GVA----------A- 124 (207)
Q Consensus 61 vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~--g~~----------~- 124 (207)
++.|.|+++.. -++++.+..- .|.+-+++.|. .+. +.++|++++.-+ +... +.- .
T Consensus 57 l~~AiGa~la~p~~~Vv~i~GDG~f~~~g~~eL~-ta~--------~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~ 127 (178)
T cd02008 57 IGVAIGMAKASEDKKVVAVIGDSTFFHSGILGLI-NAV--------YNKANITVVILDNRTTAMTGGQPHPGTGKTLTEP 127 (178)
T ss_pred HHHHhhHHhhCCCCCEEEEecChHHhhccHHHHH-HHH--------HcCCCEEEEEECCcceeccCCCCCCCCcccccCC
Confidence 34666666653 3566665532 22222234443 244 578898887654 3221 100 0
Q ss_pred CCchhHhHHHcCCCCcEEEeeCCHHHH---HHHHHHHHcCCCcEEEE
Q psy10429 125 QHSQCFGAWFTQCPGLKVVSPYNSEDA---KGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 125 hhs~~~~a~~~~iPgl~v~~P~~~~e~---~~ll~~a~~~~~P~~i~ 168 (207)
++..++.++.+.+ |++-+...+++|. ...++.+++.++|++|.
T Consensus 128 ~~~~d~~~~a~a~-G~~~~~v~~~~~l~~~~~al~~a~~~~gp~lI~ 173 (178)
T cd02008 128 TTVIDIEALVRAI-GVKRVVVVDPYDLKAIREELKEALAVPGVSVII 173 (178)
T ss_pred CCccCHHHHHHHC-CCCEEEecCccCHHHHHHHHHHHHhCCCCEEEE
Confidence 0123455666655 5555555555555 48889999999999884
No 109
>PRK05858 hypothetical protein; Provisional
Probab=94.47 E-value=0.71 Score=43.21 Aligned_cols=116 Identities=17% Similarity=0.099 Sum_probs=73.5
Q ss_pred CceeeccchhHHHHHHHHHHHhcCCcc-EEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCC--CCCCC
Q psy10429 48 KRVLDTPITEIGFAGIAVGAAMAGLRP-VCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAA--SGVAA 124 (207)
Q Consensus 48 ~r~~~~gIaE~~~vg~A~GlA~~G~~p-i~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~--~g~~~ 124 (207)
=|++.+ -.|++.+.+|-|+|+..-+| ++...+.--+..+..-|. ++. ..+.||++++..... .+.+.
T Consensus 43 i~~i~~-rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i~-~A~--------~~~~Pvl~i~g~~~~~~~~~~~ 112 (542)
T PRK05858 43 IRLIDV-RHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAMA-AAQ--------FNQSPLVVLGGRAPALRWGMGS 112 (542)
T ss_pred CCEEee-ccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHHH-HHH--------hcCCCEEEEeCCCCcccCCCCC
Confidence 366644 68999999999999984444 333332223334554443 222 568999988754333 23445
Q ss_pred CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----C-CCcEEEEECcccc
Q psy10429 125 QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----D-PDPVVFLENELLY 174 (207)
Q Consensus 125 hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~-~~P~~i~~~k~l~ 174 (207)
+|..+..++++.+--. .....+++++...++.|++ . ++||+|-.|..+.
T Consensus 113 ~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 166 (542)
T PRK05858 113 LQEIDHVPFVAPVTKF-AATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDHA 166 (542)
T ss_pred Ccccchhhhhhhhhce-EEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhhh
Confidence 5555556788887654 3444667777776666653 3 6899998886554
No 110
>PRK07586 hypothetical protein; Validated
Probab=94.46 E-value=0.73 Score=42.75 Aligned_cols=114 Identities=17% Similarity=0.052 Sum_probs=71.0
Q ss_pred ceeeccchhHHHHHHHHHHHhc-CCccEEE-echhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCC
Q psy10429 49 RVLDTPITEIGFAGIAVGAAMA-GLRPVCE-FMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAA 124 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~-~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~ 124 (207)
|++. .--|++...+|-|+|+. |..-++. +..+. +..+.--|. ++. ..+.||++++...... +.+.
T Consensus 41 ~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG-~~N~~~gl~-~A~--------~~~~Pvl~i~G~~~~~~~~~~~ 109 (514)
T PRK07586 41 RCVL-GLFEGVATGAADGYARMAGKPAATLLHLGPG-LANGLANLH-NAR--------RARTPIVNIVGDHATYHRKYDA 109 (514)
T ss_pred eEEE-eccHHHHHHHHHHHHHHHCCCEEEEecccHH-HHHHHHHHH-HHH--------hcCCCEEEEecCCchhccCCCc
Confidence 4553 46899999999999987 5444343 33444 334444443 222 5789999887543332 2344
Q ss_pred CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----C-CCcEEEEECcccc
Q psy10429 125 QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----D-PDPVVFLENELLY 174 (207)
Q Consensus 125 hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~-~~P~~i~~~k~l~ 174 (207)
++..+..++++.+=- -.....+++++..+++.|++ . ++||||-.|.-+.
T Consensus 110 ~q~~d~~~~~~~vtk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~ 163 (514)
T PRK07586 110 PLTSDIEALARPVSG-WVRRSESAADVAADAAAAVAAARGAPGQVATLILPADVA 163 (514)
T ss_pred ccccchhhhhccccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchh
Confidence 555556678877632 23446667776666665553 3 7999998886654
No 111
>PRK11269 glyoxylate carboligase; Provisional
Probab=94.42 E-value=2.8 Score=39.72 Aligned_cols=150 Identities=13% Similarity=0.031 Sum_probs=88.1
Q ss_pred HHHHHHHHhcCCcEEEEecCCCccCCc-hhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcC-CccE-EE-echhhH
Q psy10429 8 NSALDEEMARDEKVFLLGEEVALYDGA-YKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAG-LRPV-CE-FMTFNF 83 (207)
Q Consensus 8 ~~~L~~~~~~~~~vv~~~~D~~~~~g~-~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G-~~pi-~~-~~~~~~ 83 (207)
.+.|.+.+++.---.++|- .|+. ..+.+.+.+.- .=|++.+ -.|++.+.+|-|+|+.- -+|- +. +..+.
T Consensus 7 ~~~l~~~L~~~Gv~~vFg~----pG~~~~~l~dal~~~~-~i~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG- 79 (591)
T PRK11269 7 VDAAVLVLEKEGVTTAFGV----PGAAINPFYSAMRKHG-GIRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPA- 79 (591)
T ss_pred HHHHHHHHHHcCCCEEEeC----CCcccHHHHHHHhhcC-CCcEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCc-
Confidence 4556666665432223322 1121 13445664321 2477776 69999999999999865 4443 33 33443
Q ss_pred HHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc-
Q psy10429 84 SMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR- 160 (207)
Q Consensus 84 ~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~- 160 (207)
+..+..-+. ++. ..+.||++++..-.+. +.+.++..+..++++.+=-... ...+++++..+++.|++
T Consensus 80 ~~N~l~gl~-~A~--------~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~-~v~~~~~~~~~i~~A~~~ 149 (591)
T PRK11269 80 GTDMITGLY-SAS--------ADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKWAV-TVREPALVPRVFQQAFHL 149 (591)
T ss_pred HHHHHHHHH-HHh--------hcCCCEEEEecCCCccccCCCcccccChhhHhhcceeEEE-EcCCHHHHHHHHHHHHHH
Confidence 333444443 222 5689999887543332 3344555556688887654433 34678888877777765
Q ss_pred ----CCCcEEEEECcccc
Q psy10429 161 ----DPDPVVFLENELLY 174 (207)
Q Consensus 161 ----~~~P~~i~~~k~l~ 174 (207)
.++|+||-.|.-+.
T Consensus 150 A~~~~~GPV~l~iP~Dv~ 167 (591)
T PRK11269 150 MRSGRPGPVLIDLPFDVQ 167 (591)
T ss_pred HhhCCCCeEEEEeChhhh
Confidence 25899998876554
No 112
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.41 E-value=0.69 Score=43.53 Aligned_cols=114 Identities=19% Similarity=0.088 Sum_probs=75.1
Q ss_pred ceeeccchhHHHHHHHHHHHhc-CCccEEEe-chhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCC
Q psy10429 49 RVLDTPITEIGFAGIAVGAAMA-GLRPVCEF-MTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAA 124 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~-~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~ 124 (207)
+++. .-.|++.+.+|.|+|+. |...++.. ..+. +..+..-|. ++. ..+.||++++...... +.+.
T Consensus 43 ~~v~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG-~~n~~~gla-~A~--------~~~~Pvl~i~G~~~~~~~~~~~ 111 (563)
T PRK08527 43 KHIL-TRHEQAAVHAADGYARASGKVGVAIVTSGPG-FTNAVTGLA-TAY--------MDSIPLVLISGQVPNSLIGTDA 111 (563)
T ss_pred eEEE-eccHHHHHHHHHHHHhhhCCCEEEEECCCCc-HHHHHHHHH-HHh--------hcCCCEEEEecCCCccccCCCC
Confidence 5554 56899999999999985 64444443 3443 444555554 222 5789999887543332 3334
Q ss_pred CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc-----CCCcEEEEECcccc
Q psy10429 125 QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR-----DPDPVVFLENELLY 174 (207)
Q Consensus 125 hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~-----~~~P~~i~~~k~l~ 174 (207)
+|..+..++++.+=-.. ....+++++..+++.|++ .++|+||-.|.-+.
T Consensus 112 ~q~~d~~~~~~~~tk~s-~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv~ 165 (563)
T PRK08527 112 FQEIDAVGISRPCVKHN-YLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDVT 165 (563)
T ss_pred CcccchhhhhhcccceE-EEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHh
Confidence 55555568888875543 345889999988888775 35899998776543
No 113
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=94.41 E-value=1 Score=38.98 Aligned_cols=144 Identities=17% Similarity=0.075 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcC-CccEEEechh
Q psy10429 3 VRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAG-LRPVCEFMTF 81 (207)
Q Consensus 3 ~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G-~~pi~~~~~~ 81 (207)
...++.+++.++--..++.+++ .|++..+ ....+.+ -..+.+. =...+..|.|+++.. -++++.+..-
T Consensus 19 i~~~~~~a~~~l~~~p~d~ivv-sdiG~~~----~~~~~~~----~~~~~~~--mG~alp~AiGaklA~pd~~VVai~GD 87 (280)
T PRK11869 19 IRNALMKALSELNLKPRQVVIV-SGIGQAA----KMPHYIN----VNGFHTL--HGRAIPAATAVKATNPELTVIAEGGD 87 (280)
T ss_pred HHHHHHHHHHHcCCCCCCEEEE-eCchHhh----hHHHHcc----CCCCCcc--cccHHHHHHHHHHHCCCCcEEEEECc
Confidence 3467777776654444455444 4554211 1112211 1111111 123566777777765 3677766642
Q ss_pred -hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CC---CCCC----------------CCCC-chhHhHHHcCCCC
Q psy10429 82 -NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GA---ASGV----------------AAQH-SQCFGAWFTQCPG 139 (207)
Q Consensus 82 -~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~---~~g~----------------~~hh-s~~~~a~~~~iPg 139 (207)
.|..-++..|. .++ +.++|++++.-+ +. +.+. +... ..+..++.... |
T Consensus 88 G~~~~iG~~eL~-tA~--------r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~-G 157 (280)
T PRK11869 88 GDMYAEGGNHLI-HAI--------RRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIAL-D 157 (280)
T ss_pred hHHhhCcHHHHH-HHH--------HhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHC-C
Confidence 22223355554 455 568888887543 11 1110 0000 11233444333 5
Q ss_pred cEEEe---eCCHHHHHHHHHHHHcCCCcEEE
Q psy10429 140 LKVVS---PYNSEDAKGLLKAAIRDPDPVVF 167 (207)
Q Consensus 140 l~v~~---P~~~~e~~~ll~~a~~~~~P~~i 167 (207)
.+-+. +.++.|++.+++.|++.++|++|
T Consensus 158 ~~~va~~~~~~~~~l~~~i~~Al~~~Gp~lI 188 (280)
T PRK11869 158 ASFVARTFSGDIEETKEILKEAIKHKGLAIV 188 (280)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 55555 99999999999999999999987
No 114
>PRK06163 hypothetical protein; Provisional
Probab=94.24 E-value=1.1 Score=36.88 Aligned_cols=146 Identities=15% Similarity=0.123 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcC-CccEEEechh-
Q psy10429 4 RDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAG-LRPVCEFMTF- 81 (207)
Q Consensus 4 ~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G-~~pi~~~~~~- 81 (207)
|+.+-+.|.+.+.++ ++++ .|.+... +... .. ... |.+++..| +=-..++.|.|++++. -++++.+..-
T Consensus 15 ~~~~i~~l~~~l~~~-~~iv--~D~G~~~--~~~~-~~-~~~-~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i~GDG 85 (202)
T PRK06163 15 RFDLTCRLVAKLKDE-EAVI--GGIGNTN--FDLW-AA-GQR-PQNFYMLG-SMGLAFPIALGVALAQPKRRVIALEGDG 85 (202)
T ss_pred HHHHHHHHHHhcCCC-CEEE--ECCCccH--HHHH-Hh-hcC-CCCeEeec-ccccHHHHHHHHHHhCCCCeEEEEEcch
Confidence 445556666666543 3433 3554211 1111 11 123 45677433 2233445777777763 3666666642
Q ss_pred hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC--CC-C--CCCchhHhHHHcCCCCcE-EEeeCCHHHHHHH
Q psy10429 82 NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS--GV-A--AQHSQCFGAWFTQCPGLK-VVSPYNSEDAKGL 154 (207)
Q Consensus 82 ~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~--g~-~--~hhs~~~~a~~~~iPgl~-v~~P~~~~e~~~l 154 (207)
.|.+. ...|- -++. +.++|++++.-+ +... +. . ..+..++.++.+.+ |++ -+.-.+.+|...+
T Consensus 86 ~f~m~-~~eL~-Ta~~-------~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~a 155 (202)
T PRK06163 86 SLLMQ-LGALG-TIAA-------LAPKNLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGA-GLENSHWAADEAHFEAL 155 (202)
T ss_pred HHHHH-HHHHH-HHHH-------hcCCCeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHH
Confidence 23333 22222 2221 336677776543 3221 11 1 11223455666666 775 5677899999999
Q ss_pred HHHHHcCCCcEEEE
Q psy10429 155 LKAAIRDPDPVVFL 168 (207)
Q Consensus 155 l~~a~~~~~P~~i~ 168 (207)
++.+++.++|++|-
T Consensus 156 l~~a~~~~~p~lIe 169 (202)
T PRK06163 156 VDQALSGPGPSFIA 169 (202)
T ss_pred HHHHHhCCCCEEEE
Confidence 99999999999874
No 115
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=94.18 E-value=0.64 Score=43.97 Aligned_cols=114 Identities=19% Similarity=0.086 Sum_probs=73.7
Q ss_pred ceeeccchhHHHHHHHHHHHhc-CCccEEEec-hhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCC
Q psy10429 49 RVLDTPITEIGFAGIAVGAAMA-GLRPVCEFM-TFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAA 124 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~-~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~ 124 (207)
|++.+ -.|++.+.+|-|+|+. |..-++.+. .+. +..++.-|. ++. ..+.||++++..-... +.+.
T Consensus 40 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GPG-~~n~l~~i~-~A~--------~~~~Pvl~I~G~~~~~~~~~~~ 108 (586)
T PRK06276 40 IHILT-RHEQAAAHAADGYARASGKVGVCVATSGPG-ATNLVTGIA-TAY--------ADSSPVIALTGQVPTKLIGNDA 108 (586)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCcc-HHHHHHHHH-HHH--------hcCCCEEEEeCCCCccccCCCC
Confidence 56655 4999999999999987 543343333 333 344555554 323 5799999886533322 3344
Q ss_pred CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcC-----CCcEEEEECcccc
Q psy10429 125 QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRD-----PDPVVFLENELLY 174 (207)
Q Consensus 125 hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~-----~~P~~i~~~k~l~ 174 (207)
++..+..++++.+=-.... -.+++++...++.|++. ++|+||-.|..+.
T Consensus 109 ~q~~d~~~l~~~~tk~s~~-v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~ 162 (586)
T PRK06276 109 FQEIDALGIFMPITKHNFQ-IKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDVQ 162 (586)
T ss_pred CccccHhhHHhhhcceEEe-cCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhHH
Confidence 5555566888887655444 35677777777777652 6899998886554
No 116
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=94.17 E-value=2.8 Score=35.15 Aligned_cols=99 Identities=14% Similarity=0.016 Sum_probs=59.5
Q ss_pred HHHHHHHHHH----hc-CCccEEEechhh-HHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCC--C---C---
Q psy10429 59 GFAGIAVGAA----MA-GLRPVCEFMTFN-FSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGV--A---A--- 124 (207)
Q Consensus 59 ~~vg~A~GlA----~~-G~~pi~~~~~~~-~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~--~---~--- 124 (207)
+.+|.+...| .. --+|++.+..-. |.+-.+..|. .++ +.++|++++.-+-..+|. . .
T Consensus 62 gsmG~GlpaAiGa~~a~p~r~VV~i~GDG~~~~m~~~eL~-ta~--------~~~~pv~~vVlNN~~yg~tg~q~~~~~~ 132 (235)
T cd03376 62 AAVASGIEAALKALGRGKDITVVAFAGDGGTADIGFQALS-GAA--------ERGHDILYICYDNEAYMNTGIQRSGSTP 132 (235)
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEEcCchHHhhHHHHHH-HHH--------HcCCCeEEEEECCcccccCCCCCCCCCC
Confidence 4555544444 33 357887776421 1234566654 455 679998888654222221 0 0
Q ss_pred ---------C---------CchhHhHHHcCCCCcE---EEeeCCHHHHHHHHHHHHcCCCcEEE
Q psy10429 125 ---------Q---------HSQCFGAWFTQCPGLK---VVSPYNSEDAKGLLKAAIRDPDPVVF 167 (207)
Q Consensus 125 ---------h---------hs~~~~a~~~~iPgl~---v~~P~~~~e~~~ll~~a~~~~~P~~i 167 (207)
+ ...+...+.+.+ |+. .+...+++|++.+++.+++.++|++|
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~-G~~~~~~~~v~~~~el~~al~~a~~~~gP~lI 195 (235)
T cd03376 133 YGAWTTTTPVGKVSFGKKQPKKDLPLIMAAH-NIPYVATASVAYPEDLYKKVKKALSIEGPAYI 195 (235)
T ss_pred CCCEeecCCCCccccccccccCCHHHHHHHc-CCcEEEEEcCCCHHHHHHHHHHHHhCCCCEEE
Confidence 0 112344555555 444 45789999999999999999999987
No 117
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=94.14 E-value=0.61 Score=40.72 Aligned_cols=110 Identities=17% Similarity=0.071 Sum_probs=64.1
Q ss_pred eeeccchhHHHHHHHHHHHhc----CCccEEEech-hhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC---C
Q psy10429 50 VLDTPITEIGFAGIAVGAAMA----GLRPVCEFMT-FNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS---G 121 (207)
Q Consensus 50 ~~~~gIaE~~~vg~A~GlA~~----G~~pi~~~~~-~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~---g 121 (207)
++++.+.-+..++.++.+|+. +-..++.... ..+..-.++.+ +.++ ..+.|++++..|-..+ |
T Consensus 66 ~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l-~~A~--------~~~~~v~~vv~dN~~~~~TG 136 (300)
T PRK11864 66 VLHTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGFQAL-SGAA--------ERNHDILYIMYDNEAYMNTG 136 (300)
T ss_pred ceeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccHHHH-HHHH--------HhCcCEEEEEECCeeeecCC
Confidence 455555555544444444431 3344553331 12334456554 4566 5689998885431111 0
Q ss_pred ----CC----------CC----CchhHhHHH--cCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 122 ----VA----------AQ----HSQCFGAWF--TQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 122 ----~~----------~h----hs~~~~a~~--~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
.+ ++ ..-+...++ ..+|-+..+.|.++.++...++.|++.++|.+|.
T Consensus 137 gQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~~~Gps~I~ 203 (300)
T PRK11864 137 IQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKEIRGFKFIH 203 (300)
T ss_pred CCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 01 10 012233444 5667788899999999999999999999999984
No 118
>PRK07064 hypothetical protein; Provisional
Probab=94.06 E-value=0.97 Score=42.19 Aligned_cols=114 Identities=14% Similarity=0.059 Sum_probs=71.3
Q ss_pred ceeeccchhHHHHHHHHHHHhc-CCccEEE-echhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCC-
Q psy10429 49 RVLDTPITEIGFAGIAVGAAMA-GLRPVCE-FMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVA- 123 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~-~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~- 123 (207)
|++ ....|++...+|.|+|+. |...++. +..+. +..++.-|. ++. ..+.||++++..-... +.+
T Consensus 43 ~~i-~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG-~~N~~~~i~-~A~--------~~~~Pvl~i~g~~~~~~~~~~~ 111 (544)
T PRK07064 43 RFV-PARGEAGAVNMADAHARVSGGLGVALTSTGTG-AGNAAGALV-EAL--------TAGTPLLHITGQIETPYLDQDL 111 (544)
T ss_pred cEE-eeccHHHHHHHHHHHHHhcCCCeEEEeCCCCc-HHHHHHHHH-HHH--------hcCCCEEEEeCCCCcccccCCC
Confidence 444 456899999999999986 6444443 33443 444555554 222 5689999887532221 222
Q ss_pred --CCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHH----cC-CCcEEEEECcccc
Q psy10429 124 --AQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAI----RD-PDPVVFLENELLY 174 (207)
Q Consensus 124 --~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~----~~-~~P~~i~~~k~l~ 174 (207)
.|+..+...+++.+-.... ...+++++..+++.|+ .. ++||||-.|..+.
T Consensus 112 ~~~~~~~d~~~~~~~~tk~~~-~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv~ 168 (544)
T PRK07064 112 GYIHEAPDQLTMLRAVSKAAF-RVRSAETALATIREAVRVALTAPTGPVSVEIPIDIQ 168 (544)
T ss_pred cccccccCHHHHhhhhcceEE-EeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhHh
Confidence 2444466788888865433 3456777766666555 33 7999998886543
No 119
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=94.06 E-value=0.83 Score=43.05 Aligned_cols=125 Identities=16% Similarity=0.085 Sum_probs=74.7
Q ss_pred hchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEe--chhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEe
Q psy10429 37 VSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEF--MTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRG 114 (207)
Q Consensus 37 ~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~--~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~ 114 (207)
+.+.+.+ .+.-|++ ..-.|++..-+|-|+|+..-+|-+.+ ..+. ...+..-|. ++. ..+.||++++
T Consensus 32 l~dal~~-~~~i~~i-~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG-~~n~~~gi~-~A~--------~~~~Pvl~i~ 99 (574)
T PRK09124 32 LSDSLRR-MGTIEWM-HTRHEEVAAFAAGAEAQLTGELAVCAGSCGPG-NLHLINGLF-DCH--------RNHVPVLAIA 99 (574)
T ss_pred HHHHHhc-cCCCcEE-EeCcHHHHHHHHHHHHHhhCCcEEEEECCCCC-HHHHHHHHH-HHh--------hcCCCEEEEe
Confidence 3455543 2123443 33589999999999999844554443 2333 233444443 323 5689999887
Q ss_pred CCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHH----HHHHcCCCcEEEEECcccc
Q psy10429 115 PNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLL----KAAIRDPDPVVFLENELLY 174 (207)
Q Consensus 115 ~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll----~~a~~~~~P~~i~~~k~l~ 174 (207)
.+.... +.+.+|..+..++++.+--.... ..+++++...+ +.|...++|+||-.|.-+.
T Consensus 100 G~~~~~~~~~~~~Q~~d~~~l~~~itk~~~~-v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~Dv~ 164 (574)
T PRK09124 100 AHIPSSEIGSGYFQETHPQELFRECSHYCEL-VSNPEQLPRVLAIAMRKAILNRGVAVVVLPGDVA 164 (574)
T ss_pred cCCccccCCCCCccccChhhhcccceeeeEE-eCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhhh
Confidence 543432 34556666667888876443332 55666655544 4555457999998876554
No 120
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=94.03 E-value=0.57 Score=43.91 Aligned_cols=116 Identities=14% Similarity=0.023 Sum_probs=71.4
Q ss_pred ceeeccchhHHHHHHHHHHHhcCCccEEE-echhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCC
Q psy10429 49 RVLDTPITEIGFAGIAVGAAMAGLRPVCE-FMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQ 125 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A~GlA~~G~~pi~~-~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~h 125 (207)
|++ ..-.|+++..+|.|+|+.--+|-+. ..+.--+..++.-|. ++- ..+.||++++..-... +.+.+
T Consensus 41 ~~v-~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l~-~A~--------~~~~Pvl~i~G~~~~~~~~~~~~ 110 (549)
T PRK06457 41 KYV-QVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGLY-DAK--------MDHAPVIALTGQVESDMIGHDYF 110 (549)
T ss_pred eEE-EeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHHH-HHH--------hcCCCEEEEecCCCccccCCCcc
Confidence 444 4578999999999999974444443 332223334454443 322 5689999887542322 33444
Q ss_pred CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHH----HcCCCcEEEEECccccc
Q psy10429 126 HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAA----IRDPDPVVFLENELLYG 175 (207)
Q Consensus 126 hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a----~~~~~P~~i~~~k~l~~ 175 (207)
|..+..++++.+--. .....+++++..+++.| +..++|++|-.|.-+..
T Consensus 111 q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv~~ 163 (549)
T PRK06457 111 QEVNLTKLFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVDILR 163 (549)
T ss_pred cccchhhhhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhHhh
Confidence 445567888877553 34455566666655555 44579999998876653
No 121
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=94.01 E-value=0.71 Score=43.71 Aligned_cols=150 Identities=13% Similarity=0.078 Sum_probs=85.5
Q ss_pred HHHHHHHHhcC--CcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHH
Q psy10429 8 NSALDEEMARD--EKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFS 84 (207)
Q Consensus 8 ~~~L~~~~~~~--~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~ 84 (207)
.+.|.+.+++. ..+|.+-.+- ...+.+.+.+ -+ =|++. .-.|++.+.+|.|+|+. |...++.+.+.--+
T Consensus 9 ~~~l~~~L~~~GV~~vFGvpG~~-----~~~l~dal~~-~~-i~~i~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~ 80 (588)
T PRK07525 9 SEAFVETLQAHGITHAFGIIGSA-----FMDASDLFPP-AG-IRFID-VAHEQNAGHMADGYTRVTGRMGMVIGQNGPGI 80 (588)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCc-----hHHHHHHHhc-cC-CCEEE-ecCHHHHHHHHHHHHHHhCCCEEEEEcCCccH
Confidence 45555555543 3444443321 1233344422 21 34554 46899999999999986 65555444432223
Q ss_pred HHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHH---
Q psy10429 85 MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAI--- 159 (207)
Q Consensus 85 ~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~--- 159 (207)
..++.-|. ++- ..+.||++++..-... +.+.+|..+...+++.+=... ....+++++...++.|+
T Consensus 81 ~n~~~gi~-~A~--------~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~-~~i~~~~~~~~~i~rA~~~A 150 (588)
T PRK07525 81 TNFVTAVA-TAY--------WAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQ-EEVRDPSRMAEVLNRVFDKA 150 (588)
T ss_pred HHHHHHHH-HHh--------hcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhheeEE-EECCCHHHHHHHHHHHHHHH
Confidence 34554443 222 5689999987542221 233444445667888765433 33456666666555554
Q ss_pred -cCCCcEEEEECccccc
Q psy10429 160 -RDPDPVVFLENELLYG 175 (207)
Q Consensus 160 -~~~~P~~i~~~k~l~~ 175 (207)
..++||||-.|..+..
T Consensus 151 ~~~~GPV~i~iP~Dv~~ 167 (588)
T PRK07525 151 KRESGPAQINIPRDYFY 167 (588)
T ss_pred hcCCCCEEEEcChhHhh
Confidence 4689999988866654
No 122
>PRK08617 acetolactate synthase; Reviewed
Probab=93.98 E-value=0.8 Score=42.92 Aligned_cols=125 Identities=15% Similarity=0.076 Sum_probs=78.2
Q ss_pred hhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEec-hhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEE
Q psy10429 36 KVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFM-TFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFR 113 (207)
Q Consensus 36 ~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~-~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~ 113 (207)
.+.+.+.+. + -|++. ...|++...+|.|+|+. |...++..- .+. +..++.-+. ++. ..+.||+++
T Consensus 33 ~l~~al~~~-~-i~~i~-~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG-~~N~l~gl~-~A~--------~~~~Pvlvi 99 (552)
T PRK08617 33 RVFDALEDS-G-PELIV-TRHEQNAAFMAAAIGRLTGKPGVVLVTSGPG-VSNLATGLV-TAT--------AEGDPVVAI 99 (552)
T ss_pred HHHHHHhhC-C-CCEEE-eccHHHHHHHHHhHhhhcCCCEEEEECCCCc-HhHhHHHHH-HHh--------hcCCCEEEE
Confidence 344555432 2 35654 46899999999999997 543343333 333 334555443 333 568999988
Q ss_pred eCCCCC--CCCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc-----CCCcEEEEECcccc
Q psy10429 114 GPNGAA--SGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR-----DPDPVVFLENELLY 174 (207)
Q Consensus 114 ~~~G~~--~g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~-----~~~P~~i~~~k~l~ 174 (207)
+..-.. .+.+.+|..+..++++.+--. .....+++++..+++.|++ .++||||-.|.-+.
T Consensus 100 sG~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv~ 166 (552)
T PRK08617 100 GGQVKRADRLKRTHQSMDNVALFRPITKY-SAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDVV 166 (552)
T ss_pred ecCCcccccCCCCccccchhhhhhhhcce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhhhh
Confidence 653222 234556666667888888543 4445677787777776665 26899998776544
No 123
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=93.95 E-value=0.95 Score=42.69 Aligned_cols=118 Identities=22% Similarity=0.149 Sum_probs=73.8
Q ss_pred CceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCC
Q psy10429 48 KRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAA 124 (207)
Q Consensus 48 ~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~ 124 (207)
-+++.+- .|++...+|.|+|+. |..-++.......+..++--|. ++. ..+.||++++..-... +.+.
T Consensus 50 i~~v~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl~-~A~--------~~~~Pvl~I~G~~~~~~~~~~~ 119 (578)
T PRK06112 50 IRQIAYR-TENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPLA-EAL--------KASVPIVALVQDVNRDQTDRNA 119 (578)
T ss_pred CcEEEec-cHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHHH-HHh--------hcCCCEEEEecCCccccCCCCC
Confidence 3566554 999999999999987 5433333333333444554444 222 5689999887543332 3344
Q ss_pred CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----C-CCcEEEEECcccccc
Q psy10429 125 QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----D-PDPVVFLENELLYGV 176 (207)
Q Consensus 125 hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~-~~P~~i~~~k~l~~~ 176 (207)
+|..+...+++.+--. .....+++++...++.|++ . ++|+||-.|..+...
T Consensus 120 ~Q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~Dv~~~ 175 (578)
T PRK06112 120 FQELDHIALFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADLLTA 175 (578)
T ss_pred ccccChhhhhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHhHhhC
Confidence 5555567888888654 3344566676666665553 3 689999888766543
No 124
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=93.94 E-value=1.1 Score=42.09 Aligned_cols=152 Identities=14% Similarity=0.029 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCccCCc-hhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhH
Q psy10429 6 ALNSALDEEMARDEKVFLLGEEVALYDGA-YKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNF 83 (207)
Q Consensus 6 a~~~~L~~~~~~~~~vv~~~~D~~~~~g~-~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~ 83 (207)
-..+.|.+.+++..--.+++- .|+. ..+.+.+.+ .+.=|++. ..-|+++..+|-|+|+. |...++...+.--
T Consensus 10 ~~a~~l~~~L~~~GV~~vFgv----pG~~~~~l~~~l~~-~~~i~~v~-~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG 83 (568)
T PRK07449 10 LWAAVILEELTRLGVRHVVIA----PGSRSTPLTLAAAE-HPRLRLHT-HFDERSAGFLALGLAKASKRPVAVIVTSGTA 83 (568)
T ss_pred HHHHHHHHHHHHcCCCEEEEC----CCCccHHHHHHHHh-CCCcEEEe-ecCcccHHHHHHHHHHhhCCCEEEEECCccH
Confidence 355677777776633333332 2222 133344432 21124443 46899999999999986 5433344433333
Q ss_pred HHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCC-----HHHHHHHHH
Q psy10429 84 SMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYN-----SEDAKGLLK 156 (207)
Q Consensus 84 ~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~-----~~e~~~ll~ 156 (207)
+..++.-|. ++. ..+.||++++...... +.+.+|..+..++++.+-...+-.|.+ +..+..+++
T Consensus 84 ~~N~l~~i~-~A~--------~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~ 154 (568)
T PRK07449 84 VANLYPAVI-EAG--------LTGVPLIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTID 154 (568)
T ss_pred HHhhhHHHH-HHh--------hcCCcEEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHH
Confidence 445665554 333 5789999987543332 445566667778888887666666766 222344666
Q ss_pred HHH---c-CCCcEEEEECcc
Q psy10429 157 AAI---R-DPDPVVFLENEL 172 (207)
Q Consensus 157 ~a~---~-~~~P~~i~~~k~ 172 (207)
.++ . .++||||-.|.-
T Consensus 155 a~~~a~~~~~GPV~i~iP~D 174 (568)
T PRK07449 155 AALAAQTLQAGPVHINCPFR 174 (568)
T ss_pred HHHHhcCCCCCCEEEeCCCC
Confidence 633 2 489999987743
No 125
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=93.90 E-value=1.9 Score=40.46 Aligned_cols=111 Identities=18% Similarity=0.193 Sum_probs=67.8
Q ss_pred CCceeecc-ch-hHHHHHHHHHHHhcC--CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC
Q psy10429 47 DKRVLDTP-IT-EIGFAGIAVGAAMAG--LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS 120 (207)
Q Consensus 47 ~~r~~~~g-Ia-E~~~vg~A~GlA~~G--~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~ 120 (207)
|.+|+..+ .. =-..+..|+|+++.. -+|++.+..- .|.+. ...|- .+. +.++|++++..+ +...
T Consensus 386 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i~GDGsf~~~-~~eL~-Ta~--------~~~lpi~ivV~NN~~~g 455 (549)
T PRK06457 386 EQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISFVGDGGFTMT-MMELI-TAK--------KYDLPVKIIIYNNSKLG 455 (549)
T ss_pred CCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEEEcccHHhhh-HHHHH-HHH--------HHCCCeEEEEEECCccc
Confidence 45666542 11 112455677777764 4777776642 22332 33332 334 568898887653 3321
Q ss_pred ---------CCCC----CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 ---------GVAA----QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 ---------g~~~----hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
+... .+..++.++.+.+ |++-....+++|.+..++++++.++|++|-
T Consensus 456 ~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 515 (549)
T PRK06457 456 MIKFEQEVMGYPEWGVDLYNPDFTKIAESI-GFKGFRLEEPKEAEEIIEEFLNTKGPAVLD 515 (549)
T ss_pred hHHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0101 1123455666666 888889999999999999999999999984
No 126
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=93.83 E-value=1.5 Score=41.15 Aligned_cols=145 Identities=18% Similarity=0.236 Sum_probs=81.9
Q ss_pred HHHHHHHHhcCCcEEEEecCCCccCCchhhchhhh-hhcCCCceeeccc--hhHHHHHHHHHHHhcCCccEEEechh-hH
Q psy10429 8 NSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLW-KKYGDKRVLDTPI--TEIGFAGIAVGAAMAGLRPVCEFMTF-NF 83 (207)
Q Consensus 8 ~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~-~~~g~~r~~~~gI--aE~~~vg~A~GlA~~G~~pi~~~~~~-~~ 83 (207)
.+.|.+.+..+++.+++.+ .+ . .......+. -.. |.++++.+. +=-..+..|+|.++.--++++.+..- .|
T Consensus 372 ~~~l~~~l~~~~~~ivv~d-~~-~--~~~~~~~~~~~~~-p~~~~~~~~~gsmG~~lpaaiGaala~~~~vv~i~GDGsf 446 (554)
T TIGR03254 372 LEAIRDVLKDNPDIYLVNE-GA-N--TLDLARNVIDMYK-PRHRLDVGTWGVMGIGMGYAIAAAVETGKPVVALEGDSAF 446 (554)
T ss_pred HHHHHHhcCCCCCEEEEeC-Cc-h--HHHHHHHhcccCC-CCcEeeCCCCCcCCchHHHHHHHHhcCCCcEEEEEcCchh
Confidence 3445555544446555543 22 1 111112222 234 567887653 22344566777777645677776642 23
Q ss_pred HHHHHHHHHHHHhhhhhhccCCccCCEEEEeC-CCCCC-C-----CC-----CC--CchhHhHHHcCCCCcEEEeeCCHH
Q psy10429 84 SMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP-NGAAS-G-----VA-----AQ--HSQCFGAWFTQCPGLKVVSPYNSE 149 (207)
Q Consensus 84 ~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~-~G~~~-g-----~~-----~h--hs~~~~a~~~~iPgl~v~~P~~~~ 149 (207)
.+.+-| |- -++ +.++|++++.- +|+.. + .+ .. +..++.++.+.+ |.+-+.-.+++
T Consensus 447 ~m~~~E-L~-Ta~--------r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~-G~~~~~v~~~~ 515 (554)
T TIGR03254 447 GFSGME-VE-TIC--------RYNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAF-GGVGYNVTTPD 515 (554)
T ss_pred cccHHH-HH-HHH--------HcCCCEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHHC-CCeEEEeCCHH
Confidence 333322 32 344 56888877754 44321 1 01 00 122445666666 77777789999
Q ss_pred HHHHHHHHHHcCCCcEEEE
Q psy10429 150 DAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 150 e~~~ll~~a~~~~~P~~i~ 168 (207)
|.+..++++++.++|++|-
T Consensus 516 el~~al~~a~~~~~p~lIe 534 (554)
T TIGR03254 516 ELKAALNEALASGKPTLIN 534 (554)
T ss_pred HHHHHHHHHHhCCCCEEEE
Confidence 9999999999999999873
No 127
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=93.79 E-value=0.98 Score=36.58 Aligned_cols=99 Identities=18% Similarity=0.032 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcC-CccEEEechhh-HHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCCCCCC-----------
Q psy10429 60 FAGIAVGAAMAG-LRPVCEFMTFN-FSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASGVAAQ----------- 125 (207)
Q Consensus 60 ~vg~A~GlA~~G-~~pi~~~~~~~-~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g~~~h----------- 125 (207)
.++.|+|+++.. -++++.+..-. |.+-....+. .+. +.++|++++.-+ +...-...+
T Consensus 56 glpaAiGa~la~p~r~Vv~i~GDGs~f~m~~~eL~-ta~--------~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~ 126 (193)
T cd03375 56 ALAVATGVKLANPDLTVIVVSGDGDLAAIGGNHFI-HAA--------RRNIDITVIVHNNQIYGLTKGQASPTTPEGFKT 126 (193)
T ss_pred HHHHHHHHHHhCCCCeEEEEeccchHhhccHHHHH-HHH--------HhCCCeEEEEEcCcccccCCCccCCCCCCCCcc
Confidence 445777777763 46677666421 1122233333 223 568998877543 222100100
Q ss_pred ----Cc-----hhHhHHHcCCCCcEE---EeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 126 ----HS-----QCFGAWFTQCPGLKV---VSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 126 ----hs-----~~~~a~~~~iPgl~v---~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
++ .++..+.+.+ |.+- +...+++|.+..++.+++.++|++|-
T Consensus 127 ~~~~~~~~~~~~d~~~iA~a~-G~~~~~~~~v~~~~el~~al~~al~~~gp~vIe 180 (193)
T cd03375 127 KTTPYGNIEEPFNPLALALAA-GATFVARGFSGDIKQLKEIIKKAIQHKGFSFVE 180 (193)
T ss_pred cCCCCCCCCCCCCHHHHHHHC-CCCEEEEEecCCHHHHHHHHHHHHhcCCCEEEE
Confidence 01 1334555554 4433 46899999999999999999999984
No 128
>PRK08617 acetolactate synthase; Reviewed
Probab=93.75 E-value=1.6 Score=40.98 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=66.8
Q ss_pred CCceeeccchhHHHHH----HHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeC-CCCC
Q psy10429 47 DKRVLDTPITEIGFAG----IAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP-NGAA 119 (207)
Q Consensus 47 ~~r~~~~gIaE~~~vg----~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~-~G~~ 119 (207)
|.+++..+ -.+.+| .|+|.+++. -++++.+..- .|.+.. ..|- .+. +.++|++++.- +|..
T Consensus 404 p~~~~~~~--~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~-~eL~-Ta~--------~~~lpv~~vV~NN~~~ 471 (552)
T PRK08617 404 PRHLLFSN--GMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLFSA-MELE-TAV--------RLKLNIVHIIWNDGHY 471 (552)
T ss_pred CCeEEecC--ccccccccccHHHhhHhhcCCCcEEEEEechHHhhhH-HHHH-HHH--------HhCCCeEEEEEECCcc
Confidence 56766542 123445 777877763 3556655532 333333 3333 344 56899887654 3432
Q ss_pred CCC-------------CC-CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 120 SGV-------------AA-QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 120 ~g~-------------~~-hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
+. +. .+..++.++.+.+ |++-....+++|.+.+++++++.++|++|-
T Consensus 472 -~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lie 532 (552)
T PRK08617 472 -NMVEFQEEMKYGRSSGVDFGPVDFVKYAESF-GAKGLRVTSPDELEPVLREALATDGPVVID 532 (552)
T ss_pred -chHHHHHHhhcCCcccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCcEEEE
Confidence 21 01 1223455666666 888899999999999999999999999884
No 129
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=93.74 E-value=0.81 Score=37.17 Aligned_cols=115 Identities=17% Similarity=0.094 Sum_probs=68.5
Q ss_pred hhhhcCCCceeeccc-h-hHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC
Q psy10429 41 LWKKYGDKRVLDTPI-T-EIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN 116 (207)
Q Consensus 41 l~~~~g~~r~~~~gI-a-E~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~ 116 (207)
+.-.. |.+|++.+- . =-..++.|+|.+++. -++++.+..- .|.+.. ..|- -+. +.++|++++.-+
T Consensus 42 ~~~~~-~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GDG~f~m~~-~eL~-Ta~--------~~~lpviivV~N 110 (202)
T cd02006 42 LHVYK-PRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGDYDFQFMI-EELA-VGA--------QHRIPYIHVLVN 110 (202)
T ss_pred cCcCC-CCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeChHhhccH-HHHH-HHH--------HhCCCeEEEEEe
Confidence 44445 478887642 2 122556778877763 3667766632 233332 2232 233 568998887654
Q ss_pred -CCCCCC----------C----CC-----------CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----CCCcEE
Q psy10429 117 -GAASGV----------A----AQ-----------HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----DPDPVV 166 (207)
Q Consensus 117 -G~~~g~----------~----~h-----------hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~~~P~~ 166 (207)
|.. +. . .. +..++.++-+.+ |++-+.-.+++|.+.+++++++ .++|++
T Consensus 111 N~~y-g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~~p~l 188 (202)
T cd02006 111 NAYL-GLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGL-GCKAIRVTKPEELAAAFEQAKKLMAEHRVPVV 188 (202)
T ss_pred CchH-HHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHhcccCCCcEE
Confidence 332 10 0 00 012344555555 7888888999999999999985 689998
Q ss_pred EE
Q psy10429 167 FL 168 (207)
Q Consensus 167 i~ 168 (207)
|-
T Consensus 189 ie 190 (202)
T cd02006 189 VE 190 (202)
T ss_pred EE
Confidence 84
No 130
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=93.59 E-value=0.2 Score=39.04 Aligned_cols=117 Identities=22% Similarity=0.317 Sum_probs=75.2
Q ss_pred hhhhcCCCceeeccc-hhHHHHHHHHHHHhcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CC
Q psy10429 41 LWKKYGDKRVLDTPI-TEIGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GA 118 (207)
Q Consensus 41 l~~~~g~~r~~~~gI-aE~~~vg~A~GlA~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~ 118 (207)
+-++.| .+.+.+. +|..-+|+++|..++|.+|-.-+|... +....+.|- ++.. ..+.|+.++.++ |.
T Consensus 36 lveedp--~i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsG-lGNsiNal~-SL~~-------ty~iPl~ml~ShRG~ 104 (172)
T COG4032 36 LVEEDP--EIPEIPVTREEEGVGICAGAYLAGKKPAILMQNSG-LGNSINALA-SLYV-------TYKIPLLMLASHRGV 104 (172)
T ss_pred HHhcCC--CcccccccchhcceeeehhhhhcCCCcEEEEeccC-cchHHHHHH-HHHH-------Hhccchhhhhhccch
Confidence 344552 4777775 699999999999999999999999754 444444443 2222 357787776655 44
Q ss_pred CC-CCCCCC--chhHhHHHcCCCCcEEEeeCCHHHHHHHHHHH----HcCCCcEEEEE
Q psy10429 119 AS-GVAAQH--SQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAA----IRDPDPVVFLE 169 (207)
Q Consensus 119 ~~-g~~~hh--s~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a----~~~~~P~~i~~ 169 (207)
.. +...|- .-....+++.+ ++.-+.|-.|+|+..++..+ .+...|+.++.
T Consensus 105 ~~E~i~AQVpmGr~~~kiLe~~-~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vll 161 (172)
T COG4032 105 LKEGIEAQVPMGRALPKILEGL-ELPTYTIIGPEEALPLIENAILDAFENSRPVAVLL 161 (172)
T ss_pred hhcCCccccccchhhHHHHhhc-CCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 42 111111 11223455554 77788999999988776654 56788887754
No 131
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=93.59 E-value=0.94 Score=42.50 Aligned_cols=113 Identities=18% Similarity=0.125 Sum_probs=70.1
Q ss_pred hcCCCceeeccc-h-hHHHHHHHHHHHhcC-CccEEEech-hhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CC
Q psy10429 44 KYGDKRVLDTPI-T-EIGFAGIAVGAAMAG-LRPVCEFMT-FNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GA 118 (207)
Q Consensus 44 ~~g~~r~~~~gI-a-E~~~vg~A~GlA~~G-~~pi~~~~~-~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~ 118 (207)
.. |.+|++.+- . --..++.|+|++++. -++++.+.. ..|.+.. ..|- .+. +.++|++++.-+ |.
T Consensus 400 ~~-p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~~GDG~f~~~~-~eL~-ta~--------~~~l~~~~vv~NN~~ 468 (558)
T TIGR00118 400 RK-PRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICITGDGSFQMNL-QELS-TAV--------QYDIPVKILILNNRY 468 (558)
T ss_pred CC-CCeEEeCCccccccchhhHHHhhhhhCCCCcEEEEEcchHHhccH-HHHH-HHH--------HhCCCeEEEEEeCCc
Confidence 44 578887643 2 334567888877763 255555442 1234322 2222 344 568888877654 43
Q ss_pred CC----------CC---CCC-C-chhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 119 AS----------GV---AAQ-H-SQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 119 ~~----------g~---~~h-h-s~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
.. .. ..+ + ..++.++.+.+ |++-+.-.+++|.+.+++.+++.++|++|-
T Consensus 469 ~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~p~lie 532 (558)
T TIGR00118 469 LGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAY-GIKGIRIEKPEELDEKLKEALSSNEPVLLD 532 (558)
T ss_pred hHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 21 00 111 1 23456677777 888888899999999999999999999983
No 132
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=93.56 E-value=1.1 Score=41.97 Aligned_cols=116 Identities=16% Similarity=0.049 Sum_probs=71.5
Q ss_pred ceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC----CCC
Q psy10429 49 RVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS----GVA 123 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~----g~~ 123 (207)
|++ ..--|+++..+|-|+|+. |..-++.+.+.--+..+..-|. ++. ..+.||++++...... +.+
T Consensus 42 ~~i-~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gia-~A~--------~~~~Pvl~I~G~~~~~~~~~~~~ 111 (554)
T TIGR03254 42 RYI-GFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTALA-NAT--------TNCFPMIMISGSSERHIVDLQQG 111 (554)
T ss_pred cEE-EeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHHH-HHH--------hcCCCEEEEEccCCccccccCCC
Confidence 555 456899999999999986 6544444442222334554443 222 5689999886432222 223
Q ss_pred CCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc-----CCCcEEEEECccccc
Q psy10429 124 AQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR-----DPDPVVFLENELLYG 175 (207)
Q Consensus 124 ~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~-----~~~P~~i~~~k~l~~ 175 (207)
.++..+..++++.+=.. .....+++++..+++.|++ .++||||-.|.-+..
T Consensus 112 ~~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv~~ 167 (554)
T TIGR03254 112 DYEEMDQLAAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAVLG 167 (554)
T ss_pred CcchhhHHHHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHHhh
Confidence 34444567888877554 4445567777766665543 368999988765543
No 133
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=93.55 E-value=3.1 Score=33.18 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhh-hcCCCceeeccchhHHHHHHHHHHHhcCCccEEEechhh
Q psy10429 4 RDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWK-KYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTFN 82 (207)
Q Consensus 4 ~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~-~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~~ 82 (207)
|+++.+.|.+.+. ..+++ .|.+... ..+.. ..++.+++..|.- -..++.|.|+++...++++.+..-.
T Consensus 1 ~~~~~~~l~~~~~--~~~vv--~d~G~~~------~~~~~~~~~~~~~~~~g~m-G~~lp~AiGaala~~~~vv~i~GDG 69 (179)
T cd03372 1 RRDAIKTLIADLK--DELVV--SNIGFPS------KELYAAGDRPLNFYMLGSM-GLASSIGLGLALAQPRKVIVIDGDG 69 (179)
T ss_pred CHHHHHHHHHhCC--CCeEE--eCCCHhH------HHHHHccCcccccccccch-hhHHHHHHHHHhcCCCcEEEEECCc
Confidence 4566677777775 33333 3444211 11221 1224666643322 2334577787776447777766421
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCcc-CCEEEEe-CCCCCCCCC-----CCCchhHhHHHcCCCCcEEEeeC-CHHHHHHH
Q psy10429 83 FSMQAIDHIINSAAKTFYMSAGTVN-VPIVFRG-PNGAASGVA-----AQHSQCFGAWFTQCPGLKVVSPY-NSEDAKGL 154 (207)
Q Consensus 83 ~~~ra~dqi~~~~a~~~~~~~~~~~-~pvvi~~-~~G~~~g~~-----~hhs~~~~a~~~~iPgl~v~~P~-~~~e~~~l 154 (207)
-++-....+- .++ +.+ .|++++. -++...-.+ ..+..++.++.+.+ |+.-+... +++|.+.+
T Consensus 70 ~f~m~~~el~-ta~--------~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~a 139 (179)
T cd03372 70 SLLMNLGALA-TIA--------AEKPKNLIIVVLDNGAYGSTGNQPTHAGKKTDLEAVAKAC-GLDNVATVASEEAFEKA 139 (179)
T ss_pred HHHhCHHHHH-HHH--------HcCCCCEEEEEEcCccccccCCCCCCCCCCCCHHHHHHHc-CCCeEEecCCHHHHHHH
Confidence 1111222222 333 334 3565554 443321111 11233455666665 66666667 99999999
Q ss_pred HHHHHcCCCcEEEE
Q psy10429 155 LKAAIRDPDPVVFL 168 (207)
Q Consensus 155 l~~a~~~~~P~~i~ 168 (207)
++++. ++|.+|-
T Consensus 140 l~~a~--~gp~lIe 151 (179)
T cd03372 140 VEQAL--DGPSFIH 151 (179)
T ss_pred HHHhc--CCCEEEE
Confidence 99998 7899874
No 134
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=93.31 E-value=4.6 Score=34.82 Aligned_cols=141 Identities=13% Similarity=0.015 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechh-hH
Q psy10429 6 ALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTF-NF 83 (207)
Q Consensus 6 a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~-~~ 83 (207)
.+.++|.++....+++++. .|+|... .+..-+.+. .+.+.. ...+..|.|++++ --++++.+..- +|
T Consensus 30 ~v~~al~e~~~~~~d~ivv-sdiGc~~-------~~~~~~~~~-~~~~~~--G~alPaAiGaklA~Pdr~VV~i~GDG~f 98 (277)
T PRK09628 30 SIIRAIDKLGWNMDDVCVV-SGIGCSG-------RFSSYVNCN-TVHTTH--GRAVAYATGIKLANPDKHVIVVSGDGDG 98 (277)
T ss_pred HHHHHHHHhcCCCCCEEEE-eCcCHHH-------HhhccCCCC-ceeecc--ccHHHHHHHHHHHCCCCeEEEEECchHH
Confidence 4556666664334455444 5665221 111122123 333333 2677788888876 23566665532 22
Q ss_pred HHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCC-CCC---------------C-c----hhHhHHHcCCCCcEE
Q psy10429 84 SMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGV-AAQ---------------H-S----QCFGAWFTQCPGLKV 142 (207)
Q Consensus 84 ~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~-~~h---------------h-s----~~~~a~~~~iPgl~v 142 (207)
.+-. +|-...++ +.++|++++.-+-..+|. +.+ + . .++.++.+.+ |..-
T Consensus 99 ~~~g-~~el~ta~--------r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~-G~~~ 168 (277)
T PRK09628 99 LAIG-GNHTIHGC--------RRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAA-GASF 168 (277)
T ss_pred HHhh-HHHHHHHH--------HhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHC-CCce
Confidence 2212 22222345 678998888554222111 000 0 0 1223444443 5554
Q ss_pred ---EeeCCHHHHHHHHHHHHcCCCcEEE
Q psy10429 143 ---VSPYNSEDAKGLLKAAIRDPDPVVF 167 (207)
Q Consensus 143 ---~~P~~~~e~~~ll~~a~~~~~P~~i 167 (207)
....+++|++.+++.|++.++|++|
T Consensus 169 va~~~v~~~~el~~al~~Al~~~Gp~lI 196 (277)
T PRK09628 169 VARESVIDPQKLEKLLVKGFSHKGFSFF 196 (277)
T ss_pred EEEEccCCHHHHHHHHHHHHhCCCCEEE
Confidence 5789999999999999999999987
No 135
>PRK08266 hypothetical protein; Provisional
Probab=93.18 E-value=1.8 Score=40.35 Aligned_cols=111 Identities=21% Similarity=0.181 Sum_probs=68.7
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeC-CCCCC-
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP-NGAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~-~G~~~- 120 (207)
|.+++..+. +=-..++.|+|+++.. -++++.+..- .|.+ ....|- .+. +.++|++++.- +|+..
T Consensus 392 ~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v~GDG~f~~-~~~eL~-ta~--------~~~lpv~ivv~NN~~y~~ 461 (542)
T PRK08266 392 PRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMF-GVQELA-TAV--------QHNIGVVTVVFNNNAYGN 461 (542)
T ss_pred CCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchhhhc-cHHHHH-HHH--------HhCCCeEEEEEeCCcchH
Confidence 567877653 1122346778887774 3555555532 2233 233333 334 56899888754 33321
Q ss_pred ---------CC----CCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 ---------GV----AAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 ---------g~----~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
++ ...+..++..+.+.+ |++...-.+.+|.+..++++++.++|++|-
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 521 (542)
T PRK08266 462 VRRDQKRRFGGRVVASDLVNPDFVKLAESF-GVAAFRVDSPEELRAALEAALAHGGPVLIE 521 (542)
T ss_pred HHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 01 111223455677777 888888899999999999999999999874
No 136
>PRK07524 hypothetical protein; Provisional
Probab=93.17 E-value=1.5 Score=41.01 Aligned_cols=116 Identities=19% Similarity=0.159 Sum_probs=73.2
Q ss_pred ceeeccchhHHHHHHHHHHHhcCCcc-EEEe-chhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CC--
Q psy10429 49 RVLDTPITEIGFAGIAVGAAMAGLRP-VCEF-MTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GV-- 122 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A~GlA~~G~~p-i~~~-~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~-- 122 (207)
|++. .-.|++.+.+|-|+|+.--+| ++.. ..+. +..++.-|. ++. ..+.||++++..-... +.
T Consensus 41 ~~i~-~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG-~~n~~~gi~-~A~--------~~~~Pvl~i~G~~~~~~~~~~~ 109 (535)
T PRK07524 41 RHVT-PRHEQGAGFMADGYARVSGKPGVCFIITGPG-MTNIATAMG-QAY--------ADSIPMLVISSVNRRASLGKGR 109 (535)
T ss_pred cEEE-eccHHHHHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHH-HHH--------hcCCCEEEEeCCCChhhcCCCC
Confidence 5554 468999999999999874443 4433 3433 444555544 333 5799999886532222 21
Q ss_pred CCCCc-hhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc-----CCCcEEEEECcccccc
Q psy10429 123 AAQHS-QCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR-----DPDPVVFLENELLYGV 176 (207)
Q Consensus 123 ~~hhs-~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~-----~~~P~~i~~~k~l~~~ 176 (207)
+.+|. .+..++++.+=- -.....+++++...++.|++ .++|+||-.|+-+...
T Consensus 110 ~~~~~~~d~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~ 168 (535)
T PRK07524 110 GKLHELPDQRAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVLAA 168 (535)
T ss_pred ccccccccHHHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhHHhc
Confidence 12232 355688887754 44566678888877777664 3799999888766543
No 137
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=92.97 E-value=1.4 Score=41.52 Aligned_cols=117 Identities=14% Similarity=0.012 Sum_probs=73.5
Q ss_pred CceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC----CC
Q psy10429 48 KRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS----GV 122 (207)
Q Consensus 48 ~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~----g~ 122 (207)
-|++. --.|+++..+|.|.|+. |..-++...+.--+..+..-|. ++. ..+.||++++...... +.
T Consensus 48 i~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl~-~A~--------~~~~Pvl~I~G~~~~~~~~~~~ 117 (569)
T PRK09259 48 IRYIG-FRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTALA-NAT--------TNCFPMIMISGSSEREIVDLQQ 117 (569)
T ss_pred CCEEe-eCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHH-HHH--------hcCCCEEEEEccCCcccccccC
Confidence 35554 46899999999999997 5555544443333444555554 333 5789999886432221 12
Q ss_pred CCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----C-CCcEEEEECccccc
Q psy10429 123 AAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----D-PDPVVFLENELLYG 175 (207)
Q Consensus 123 ~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~-~~P~~i~~~k~l~~ 175 (207)
+.++..+..++++.+=..... ..+++++...++.|++ . ++||||-.|.-+..
T Consensus 118 ~~~q~~d~~~~~~~~tk~s~~-v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~ 174 (569)
T PRK09259 118 GDYEELDQLNAAKPFCKAAFR-VNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKVLA 174 (569)
T ss_pred CCccccchhhhhhhheeeeEE-cCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHHhh
Confidence 334444556788887654433 3577887776666654 3 78999988866553
No 138
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=92.88 E-value=1.6 Score=41.23 Aligned_cols=115 Identities=15% Similarity=0.140 Sum_probs=71.7
Q ss_pred ceeeccchhHHHHHHHHHHHhc-CCccEEEec-hhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCC
Q psy10429 49 RVLDTPITEIGFAGIAVGAAMA-GLRPVCEFM-TFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAA 124 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~-~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~ 124 (207)
|++. .-.|++++.+|-|+|+. |...++... .+. +..+..-|. ++. ..+.||++++..-... +.+.
T Consensus 41 ~~i~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG-~~N~~~gla-~A~--------~~~~Pvl~I~g~~~~~~~~~~~ 109 (579)
T TIGR03457 41 RFIP-VVHEQGAGHMADGFARVTGRMSMVIGQNGPG-VTNCVTAIA-AAY--------WAHTPVVIVTPEAGTKTIGLGG 109 (579)
T ss_pred eEEE-eccHHHHHHHHHHHHHHhCCCEEEEECCCch-HHHHHHHHH-HHh--------hcCCCEEEEeCCCccccCCCCC
Confidence 4554 46899999999999986 655554343 443 344554443 222 5689999987532222 3344
Q ss_pred CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHH----cCCCcEEEEECccccc
Q psy10429 125 QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAI----RDPDPVVFLENELLYG 175 (207)
Q Consensus 125 hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~----~~~~P~~i~~~k~l~~ 175 (207)
+|..+..++++.+=-... ...+++++...++.|+ ..++||||-.|..+..
T Consensus 110 ~Q~~d~~~l~~~vtk~~~-~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~~ 163 (579)
T TIGR03457 110 FQEADQLPMFQEFTKYQG-HVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDYFY 163 (579)
T ss_pred CcccchhhhhhcceeEEE-ecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcchhh
Confidence 555556678887654333 3356666666565554 4578999988866553
No 139
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=92.81 E-value=2.4 Score=33.32 Aligned_cols=109 Identities=17% Similarity=0.066 Sum_probs=65.8
Q ss_pred eeccchhHHHHHHHHHHHhcCCccEEEec-hhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCC--C
Q psy10429 51 LDTPITEIGFAGIAVGAAMAGLRPVCEFM-TFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAA--Q 125 (207)
Q Consensus 51 ~~~gIaE~~~vg~A~GlA~~G~~pi~~~~-~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~--h 125 (207)
+-..-.|++...+|.|+|+.- +|-+.+- ..--+..+..-|.+ +. ..+.||++++...... +.+. |
T Consensus 38 ~i~~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~~-A~--------~~~~Pvl~i~g~~~~~~~~~~~~~~ 107 (162)
T cd07038 38 WVGNCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIAG-AY--------AEHVPVVHIVGAPSTKAQASGLLLH 107 (162)
T ss_pred EEeeCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHHH-HH--------HcCCCEEEEecCCCcccccccccee
Confidence 345678999999999999986 4444333 22234455665553 33 4689999997653322 1111 2
Q ss_pred C-----chh-HhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----CCCcEEEEEC
Q psy10429 126 H-----SQC-FGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----DPDPVVFLEN 170 (207)
Q Consensus 126 h-----s~~-~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~~~P~~i~~~ 170 (207)
| .++ ..++++.+=....- ..++++...+++.|++ .++|++|-.|
T Consensus 108 ~~~~~~~~~d~~~~~~~~tk~~~~-v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 108 HTLGDGDFDVFLKMFEEITCAAAR-LTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred ecccccchHHHHHHHHhheeEEEE-eCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 2 122 35788777554333 3577777776666654 4689998544
No 140
>PRK05858 hypothetical protein; Provisional
Probab=92.74 E-value=1.6 Score=40.80 Aligned_cols=111 Identities=16% Similarity=0.054 Sum_probs=67.9
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhc-CCccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCC
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMA-GLRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGV 122 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~-G~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~ 122 (207)
|.+|+..+. +=...++.|+|.++. .-++++.+..- .|.+. ...|- -+. +.++|++++.-+-..++.
T Consensus 397 p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i~GDG~f~~~-~~eL~-Ta~--------~~~lpi~ivV~NN~~y~~ 466 (542)
T PRK05858 397 PGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLLQGDGAFGFS-LMDVD-TLV--------RHNLPVVSVIGNNGIWGL 466 (542)
T ss_pred CCCEEeCCCccccccchhHHHHHHHhCCCCcEEEEEcCchhcCc-HHHHH-HHH--------HcCCCEEEEEEeCCchhh
Confidence 578887754 333345566666665 23566666642 23332 22222 333 568888887654222221
Q ss_pred ---------CC------CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 123 ---------AA------QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 123 ---------~~------hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
+. .+..++.++.+.+ |..-..-.+++|.+.+++.+++.++|++|-
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 526 (542)
T PRK05858 467 EKHPMEALYGYDVAADLRPGTRYDEVVRAL-GGHGELVTVPAELGPALERAFASGVPYLVN 526 (542)
T ss_pred HHHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 10 0123445566666 788889999999999999999999999985
No 141
>PRK12474 hypothetical protein; Provisional
Probab=92.69 E-value=2.1 Score=39.89 Aligned_cols=114 Identities=13% Similarity=0.032 Sum_probs=72.6
Q ss_pred ceeeccchhHHHHHHHHHHHhc-CCccEEEec-hhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCC
Q psy10429 49 RVLDTPITEIGFAGIAVGAAMA-GLRPVCEFM-TFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAA 124 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~-~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~ 124 (207)
|++. ---|++...+|-|+|+. |..-++.+. .+. ...+.--|. ++. .-+.||++++...... +.+.
T Consensus 45 ~~i~-~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG-~~N~~~gl~-~A~--------~d~~Pvl~i~G~~~~~~~~~~~ 113 (518)
T PRK12474 45 RPVL-CLFEGVVTGAADGYGRIAGKPAVTLLHLGPG-LANGLANLH-NAR--------RAASPIVNIVGDHAVEHLQYDA 113 (518)
T ss_pred eEEE-ecchHHHHHHHHHHHHHhCCCEEEEEccchh-HhHhHHHHH-HHh--------hcCCCEEEEeccCchhhcCCCC
Confidence 5554 46899999999999986 644444433 444 334444433 222 4689999886433322 2233
Q ss_pred CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc-----CCCcEEEEECcccc
Q psy10429 125 QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR-----DPDPVVFLENELLY 174 (207)
Q Consensus 125 hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~-----~~~P~~i~~~k~l~ 174 (207)
++..+..++++.+--. .....+++++..+++.|++ .++||+|-.|.-+.
T Consensus 114 ~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv~ 167 (518)
T PRK12474 114 PLTSDIDGFARPVSRW-VHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADVA 167 (518)
T ss_pred ccccCHHHhhhcccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhhh
Confidence 4444566888866432 3356788888888887774 36899998887654
No 142
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=92.60 E-value=2.1 Score=40.58 Aligned_cols=115 Identities=15% Similarity=0.019 Sum_probs=73.1
Q ss_pred ceeeccchhHHHHHHHHHHHhcC-CccEEE-e-chhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCC
Q psy10429 49 RVLDTPITEIGFAGIAVGAAMAG-LRPVCE-F-MTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVA 123 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A~GlA~~G-~~pi~~-~-~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~ 123 (207)
|++. .--|++++.+|-|+|+.. .+|-+. . ..+. +..+..-|. ++. ..+.||++++..-.+. +.+
T Consensus 43 ~~V~-~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG-~~N~~~gla-~A~--------~~~~Pvl~I~G~~~~~~~~~~ 111 (588)
T TIGR01504 43 RHIL-ARHVEGASHMAEGYTRATAGNIGVCIGTSGPA-GTDMITGLY-SAS--------ADSIPILCITGQAPRARLHKE 111 (588)
T ss_pred cEEe-eCCHHHHHHHHHHHHHhcCCCeEEEEECCCcc-HHHHHHHHH-HHh--------hcCCCEEEEecCCCccccCCC
Confidence 5544 456999999999999863 444433 3 3443 334555444 222 5689999887543322 334
Q ss_pred CCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc-----CCCcEEEEECccccc
Q psy10429 124 AQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR-----DPDPVVFLENELLYG 175 (207)
Q Consensus 124 ~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~-----~~~P~~i~~~k~l~~ 175 (207)
.+|..+..++++.+=-...- ..+++++...++.|++ .++||||-.|+.+..
T Consensus 112 ~~q~~D~~~~~~~vtk~~~~-v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~ 167 (588)
T TIGR01504 112 DFQAVDIAAIAKPVSKMAVT-VREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQV 167 (588)
T ss_pred cccccCHHHHhhhhceEEEE-cCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcchhh
Confidence 45555566888887654433 3578888888877765 358999988876553
No 143
>PRK08322 acetolactate synthase; Reviewed
Probab=92.58 E-value=3.3 Score=38.68 Aligned_cols=111 Identities=19% Similarity=0.140 Sum_probs=66.4
Q ss_pred CCceeec-cch-hHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDT-PIT-EIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~-gIa-E~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+++.. +.. =-..++.|+|.+++. -++++.+..- .|.+.. ..|- .+. +.++|++++.-+ |...
T Consensus 396 ~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~-~eL~-Ta~--------~~~lpv~iiV~NN~~~g~ 465 (547)
T PRK08322 396 PNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAVCGDGGFMMNS-QELE-TAV--------RLGLPLVVLILNDNAYGM 465 (547)
T ss_pred CCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEEEcchhHhccH-HHHH-HHH--------HhCCCeEEEEEeCCCcch
Confidence 4666643 322 223556788887763 3556655532 223322 2222 223 568888877543 3321
Q ss_pred --------CC---CC-CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 --------GV---AA-QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 --------g~---~~-hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
+. +. .+..++.++.+.+ |++-+.-.+++|.+..++++++.++|++|-
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 524 (547)
T PRK08322 466 IRWKQENMGFEDFGLDFGNPDFVKYAESY-GAKGYRVESADDLLPTLEEALAQPGVHVID 524 (547)
T ss_pred HHHHHHhhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 01 1223455666666 888888999999999999999999999884
No 144
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=92.56 E-value=2.6 Score=39.36 Aligned_cols=111 Identities=17% Similarity=0.087 Sum_probs=68.8
Q ss_pred CCceeecc-ch-hHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC
Q psy10429 47 DKRVLDTP-IT-EIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG 121 (207)
Q Consensus 47 ~~r~~~~g-Ia-E~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g 121 (207)
|.+++..+ +. =-..++.|+|+++.. -++++.+..- .|.+.. ..|- .+. +.++|++++.-+ |...-
T Consensus 398 ~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~m~~-~eL~-Ta~--------~~~lpi~ivV~NN~~y~~ 467 (539)
T TIGR02418 398 ARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSS-MELE-TAV--------RLKLNIVHIIWNDNGYNM 467 (539)
T ss_pred CCceecCCCccccccHHHHHHHHHHhCCCCcEEEEEcchhhhchH-HHHH-HHH--------HhCCCeEEEEEECCcchH
Confidence 56776542 22 124556777877763 3566666532 233333 2233 344 568898887543 43210
Q ss_pred --------CC-----CCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 122 --------VA-----AQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 122 --------~~-----~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
.+ ..++.++.++.+.+ |++-..-.+++|.+..+++|++.++|++|-
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~p~lIe 526 (539)
T TIGR02418 468 VEFQEEMKYQRSSGVDFGPIDFVKYAESF-GAKGLRVESPDQLEPTLRQAMEVEGPVVVD 526 (539)
T ss_pred HHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 01 01123456677777 888899999999999999999999999984
No 145
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=92.50 E-value=1.8 Score=41.04 Aligned_cols=111 Identities=19% Similarity=0.161 Sum_probs=69.1
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|++.+- +--..++.|+|++++. -++++.+..- .|.+. ...| ..+. +.++|++++.-+ |...
T Consensus 409 p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i~GDGsf~m~-~~eL-~Ta~--------~~~lpv~~vV~NN~~~g~ 478 (586)
T PRK06276 409 PRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMN-SQEL-ATIA--------EYDIPVVICIFDNRTLGM 478 (586)
T ss_pred CCeEEcCCCccccccchhHHHhhhhhcCCCcEEEEEcchHhhcc-HHHH-HHHH--------HhCCCeEEEEEeCCchHH
Confidence 578887642 3344667888888763 3555555532 22322 2222 2333 568888887653 4321
Q ss_pred ---------CC---CCCC--chhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 ---------GV---AAQH--SQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 ---------g~---~~hh--s~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
+. +.+. ..++.++...+ |.+-+.-.+++|.+.+++.+++.++|++|-
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 539 (586)
T PRK06276 479 VYQWQNLYYGKRQSEVHLGETPDFVKLAESY-GVKADRVEKPDEIKEALKEAIKSGEPYLLD 539 (586)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 1111 23456677777 888888899999999999999999999873
No 146
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=92.44 E-value=2.8 Score=36.57 Aligned_cols=99 Identities=20% Similarity=0.082 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCC---CCC-C---------
Q psy10429 60 FAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAA---SGV-A--------- 123 (207)
Q Consensus 60 ~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~---~g~-~--------- 123 (207)
.+..|.|++++. -++++.+..- +|..-....+. .++ +.++|++++.-+ +.. .+. .
T Consensus 75 alpaAiGaklA~pd~~VV~i~GDG~~~~mg~~eL~-tA~--------r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~ 145 (301)
T PRK05778 75 AIAFATGAKLANPDLEVIVVGGDGDLASIGGGHFI-HAG--------RRNIDITVIVENNGIYGLTKGQASPTTPEGSKT 145 (301)
T ss_pred HHHHHHHHHHHCCCCcEEEEeCccHHHhccHHHHH-HHH--------HHCCCcEEEEEeCchhhcccCcccCCcCCCccc
Confidence 456777777763 3566655532 22233445554 445 568898887543 221 110 0
Q ss_pred ---CC----CchhHhHHHcCCCCcEEE---eeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 124 ---AQ----HSQCFGAWFTQCPGLKVV---SPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 124 ---~h----hs~~~~a~~~~iPgl~v~---~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
++ ...++..+.... |.+-+ ...++.|++.+++.|++.++|++|-
T Consensus 146 ~~~~~g~~~~~~d~~~lA~a~-G~~~va~~~v~~~~eL~~ai~~A~~~~GpalIe 199 (301)
T PRK05778 146 KTAPYGNIEPPIDPCALALAA-GATFVARSFAGDVKQLVELIKKAISHKGFAFID 199 (301)
T ss_pred ccccCCCcCCCCCHHHHHHHC-CCCEEEEeccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 112344555554 66654 7899999999999999999999863
No 147
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=92.43 E-value=2.6 Score=39.83 Aligned_cols=111 Identities=19% Similarity=0.235 Sum_probs=65.4
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
+.+++..+- +=-..+..|+|++++- -++++.+..- .|.+ ....+ ..++ +.++|++++.-+ ++..
T Consensus 398 ~~~~~~s~~~gsmG~~~paAiGa~la~p~~~vv~i~GDGsf~~-~~~el-~Ta~--------~~~lpv~~vV~NN~~~g~ 467 (578)
T PRK06546 398 RRRVIGSFRHGSMANALPHAIGAQLADPGRQVISMSGDGGLSM-LLGEL-LTVK--------LYDLPVKVVVFNNSTLGM 467 (578)
T ss_pred CceEEccCCcccccchhHHHHHHHHhCCCCcEEEEEcCchHhh-hHHHH-HHHH--------HhCCCeEEEEEECCcccc
Confidence 456765432 1112334777777763 2455555532 3343 23333 3455 578898887654 3321
Q ss_pred -------CCCCC-----CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 -------GVAAQ-----HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 -------g~~~h-----hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
.+..+ +..++..+.+.+ |..-..-.+++|.+.+++++++.++|++|-
T Consensus 468 i~~~q~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 526 (578)
T PRK06546 468 VKLEMLVDGLPDFGTDHPPVDYAAIAAAL-GIHAVRVEDPKDVRGALREAFAHPGPALVD 526 (578)
T ss_pred HHHHHHhcCCCcccccCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 11111 122445566666 676777789999999999999999999983
No 148
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=92.42 E-value=1.9 Score=40.73 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=74.5
Q ss_pred hchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeC
Q psy10429 37 VSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP 115 (207)
Q Consensus 37 ~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~ 115 (207)
+.+.+.+.-+ =|++.+ --|++++.+|-|+|+. |...++.....--+..++--|. ++- ..+.||++++.
T Consensus 32 l~dal~~~~~-i~~i~~-rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl~-~A~--------~~~~Pvl~I~G 100 (578)
T PRK06546 32 IVDAVRRTGG-IEWVHV-RHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGLY-DAH--------RSGAPVLAIAS 100 (578)
T ss_pred HHHHHhccCC-CeEEEe-CcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHHH-HHH--------hcCCCEEEEeC
Confidence 3455544322 345543 4799999999999998 4444443332222333444443 222 56899998875
Q ss_pred CCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHH----cCCCcEEEEECcccc
Q psy10429 116 NGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAI----RDPDPVVFLENELLY 174 (207)
Q Consensus 116 ~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~----~~~~P~~i~~~k~l~ 174 (207)
..... +.+.+|..+...+++.+=- -.....+++++...++.|+ ..++|++|-.|..+.
T Consensus 101 ~~~~~~~~~~~~Qe~d~~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~Dv~ 164 (578)
T PRK06546 101 HIPSAQIGSGFFQETHPDRLFVECSG-YCEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGDIA 164 (578)
T ss_pred CCCccccCCCCccccChhhhccccee-eEeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhhh
Confidence 43332 3344555555677776633 2345566777766555554 458999998776554
No 149
>PRK08266 hypothetical protein; Provisional
Probab=92.37 E-value=2.1 Score=40.01 Aligned_cols=127 Identities=19% Similarity=0.161 Sum_probs=74.7
Q ss_pred hhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEe-chhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEE
Q psy10429 36 KVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEF-MTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFR 113 (207)
Q Consensus 36 ~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~-~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~ 113 (207)
.+.+.+.+.-+.=|++. ...|++.+.+|.|+|+. |...++.. ..+. +..++.-|. ++. ..+.||+++
T Consensus 32 ~l~~al~~~~~~i~~v~-~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG-~~N~~~gi~-~A~--------~~~~Pvl~i 100 (542)
T PRK08266 32 WLFDALYKAGDRIRVIH-TRHEQAAGYMAFGYARSTGRPGVCSVVPGPG-VLNAGAALL-TAY--------GCNSPVLCL 100 (542)
T ss_pred HHHHHHHhcCCCCeEEe-eccHHHHHHHHHHHHHHhCCCeEEEECCCCc-HHHHHHHHH-HHH--------hhCCCEEEE
Confidence 34455544211235554 46899999999999987 54334333 3433 444555544 333 579999988
Q ss_pred eCCCCCC--CCC--CCCc-hhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc-----CCCcEEEEECcccc
Q psy10429 114 GPNGAAS--GVA--AQHS-QCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR-----DPDPVVFLENELLY 174 (207)
Q Consensus 114 ~~~G~~~--g~~--~hhs-~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~-----~~~P~~i~~~k~l~ 174 (207)
+..-... +.+ .+|. .+...+++.+-.. .....+++++..+++.|++ .++||++-.|..+.
T Consensus 101 ~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~dv~ 170 (542)
T PRK08266 101 TGQIPSALIGKGRGHLHEMPDQLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDVF 170 (542)
T ss_pred ecCCChhhccCCCCcceecccHhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHhHh
Confidence 7542322 222 1232 2456888877553 3444556666666665554 37999998886544
No 150
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.21 E-value=2.1 Score=40.32 Aligned_cols=111 Identities=15% Similarity=0.045 Sum_probs=68.8
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG 121 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g 121 (207)
|.+|+..+- +=-..++.|.|+++.. -++++.+..- .|.+-..| |- .+. +.++|++++.-+ |...-
T Consensus 404 ~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~GDG~f~m~~~e-L~-Ta~--------~~~lpvi~vV~NN~~~~~ 473 (563)
T PRK08527 404 PRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINFTGDGSILMNIQE-LM-TAV--------EYKIPVINIILNNNFLGM 473 (563)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEecCchhcccHHH-HH-HHH--------HhCCCeEEEEEECCcchh
Confidence 567876542 2233667888888774 3556655532 23433322 32 344 568998877543 43210
Q ss_pred ---------C----CCCC--chhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 122 ---------V----AAQH--SQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 122 ---------~----~~hh--s~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
. +..+ ..++.++.+.+ |.+-+.-.+++|.+.+++++++.++|++|-
T Consensus 474 i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 534 (563)
T PRK08527 474 VRQWQTFFYEERYSETDLSTQPDFVKLAESF-GGIGFRVTTKEEFDKALKEALESDKVALID 534 (563)
T ss_pred HHHHHHhhcCCceeeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 1111 12445666666 778888899999999999999999999883
No 151
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=92.10 E-value=2.4 Score=40.15 Aligned_cols=115 Identities=17% Similarity=0.070 Sum_probs=71.0
Q ss_pred ceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCC
Q psy10429 49 RVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQ 125 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~h 125 (207)
|++. ...|++.+.+|.|+|+. |..-++...+.--+..+..-|. ++. ..+.||++++...... +.+.+
T Consensus 53 ~~i~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~-~A~--------~~~~Pvl~I~G~~~~~~~~~~~~ 122 (585)
T CHL00099 53 KHIL-VRHEQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGIA-TAQ--------MDSVPLLVITGQVGRAFIGTDAF 122 (585)
T ss_pred eEEE-ecCHHHHHHHHHHHHHhcCCcEEEEECCCCcHHHHHHHHH-HHh--------hcCCCEEEEecCCCccccCCCCc
Confidence 5665 56999999999999986 6444443332223334554443 222 5789999987543332 23344
Q ss_pred CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc-----CCCcEEEEECcccc
Q psy10429 126 HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR-----DPDPVVFLENELLY 174 (207)
Q Consensus 126 hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~-----~~~P~~i~~~k~l~ 174 (207)
|..+..++++.+=-. .....+++++..+++.|++ .++|+||-.|.-+.
T Consensus 123 q~~d~~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 175 (585)
T CHL00099 123 QEVDIFGITLPIVKH-SYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDVG 175 (585)
T ss_pred cccchhhhhcCceeE-EEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhhh
Confidence 444445666655322 3344577888877777664 26899998876543
No 152
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=92.09 E-value=1.3 Score=41.83 Aligned_cols=128 Identities=11% Similarity=-0.020 Sum_probs=74.9
Q ss_pred hhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEe
Q psy10429 36 KVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRG 114 (207)
Q Consensus 36 ~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~ 114 (207)
.+.+.+.+.-+.=|++.+ -.|++...+|-|.|+. |...++...+.--+..+..-|.+ +- ..+.||++++
T Consensus 27 ~l~dal~~~~~~i~~v~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i~~-A~--------~~~~Pvl~I~ 96 (575)
T TIGR02720 27 STMDALSAERDRIHYIQV-RHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGLYD-AK--------EDHVPVLALV 96 (575)
T ss_pred HHHHHHHhcCCCCcEEEe-ccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHHHH-Hh--------hcCCCEEEEe
Confidence 344555432111355544 5799999999999986 54444443333334445555442 22 5689999987
Q ss_pred CCCCCC--CCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHH----HHHHHHcCCCcEEEEECcccc
Q psy10429 115 PNGAAS--GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKG----LLKAAIRDPDPVVFLENELLY 174 (207)
Q Consensus 115 ~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~----ll~~a~~~~~P~~i~~~k~l~ 174 (207)
...... +...+|..+..++++.+=-.. ....+++++.. +++.|+..++|+||-.|.-+.
T Consensus 97 G~~~~~~~~~~~~q~id~~~~~~~vtk~~-~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~ 161 (575)
T TIGR02720 97 GQVPTTGMNMDTFQEMNENPIYADVAVYN-RTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDFG 161 (575)
T ss_pred cCCccccCCCCCcceechhhhhhhcceEE-EEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcchh
Confidence 654433 334455555567777664332 23344555544 555555578999998886554
No 153
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=92.06 E-value=3 Score=39.18 Aligned_cols=111 Identities=16% Similarity=0.139 Sum_probs=69.5
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeC-CCCCCC
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP-NGAASG 121 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~-~G~~~g 121 (207)
|.+|++.+- +--..++.|+|.+++- -++++.+..- .|.+.. ..| ..+. +.++|++++.- +|...-
T Consensus 404 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~-~eL-~Ta~--------~~~l~i~~vV~NN~~y~~ 473 (561)
T PRK06048 404 PRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDGSFQMNS-QEL-ATAV--------QNDIPVIVAILNNGYLGM 473 (561)
T ss_pred CCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCchhhccH-HHH-HHHH--------HcCCCeEEEEEECCccHH
Confidence 567887543 3344667788888763 3566666632 233332 222 2333 56888777754 343310
Q ss_pred ---------CCC------CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 122 ---------VAA------QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 122 ---------~~~------hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
... .+..++.++-+.+ |.+-+.-.+++|.+.+++++++.++|++|-
T Consensus 474 i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~t~~el~~al~~a~~~~~p~lie 534 (561)
T PRK06048 474 VRQWQELFYDKRYSHTCIKGSVDFVKLAEAY-GALGLRVEKPSEVRPAIEEAVASDRPVVID 534 (561)
T ss_pred HHHHHHHHcCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 000 0223455666666 888889999999999999999999999984
No 154
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.75 E-value=3.3 Score=39.20 Aligned_cols=111 Identities=15% Similarity=0.037 Sum_probs=69.5
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|++.+- +--..++.|+|++++- -++++.+..- .|.+.+ ..| .-+. +.++|++++.-+ |...
T Consensus 427 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDGsf~m~~-~eL-~Ta~--------r~~lpviivV~NN~~~~~ 496 (587)
T PRK06965 427 PRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGEGSIQMCI-QEL-STCL--------QYDTPVKIISLNNRYLGM 496 (587)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhcCH-HHH-HHHH--------HcCCCeEEEEEECCcchH
Confidence 578887643 4455577788888873 3566666632 233332 222 2333 578998887653 4321
Q ss_pred --------CCC----CC--CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcC-CCcEEEE
Q psy10429 121 --------GVA----AQ--HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRD-PDPVVFL 168 (207)
Q Consensus 121 --------g~~----~h--hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~-~~P~~i~ 168 (207)
..+ .. ...++.++-+.+ |.+-+.-.++.|...+++.|++. ++|++|-
T Consensus 497 i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lie 558 (587)
T PRK06965 497 VRQWQEIEYSKRYSHSYMDALPDFVKLAEAY-GHVGMRIEKTSDVEPALREALRLKDRTVFLD 558 (587)
T ss_pred HHHHHHHhcCCCccccCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 000 01 112344566666 88888999999999999999985 8899884
No 155
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=91.55 E-value=1.7 Score=39.48 Aligned_cols=115 Identities=18% Similarity=0.124 Sum_probs=69.7
Q ss_pred ceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCC--CCCCCC
Q psy10429 49 RVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAA--SGVAAQ 125 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~--~g~~~h 125 (207)
+++ ....|+++.-+|-|+|+. |..-++...+.--...++.-|. ++- ..+.||+++...-.. .+.+..
T Consensus 40 ~~v-~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl~-~A~--------~~~~Pvl~i~g~~~~~~~~~~~~ 109 (432)
T TIGR00173 40 RVH-VHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAVI-EAS--------YSGVPLIVLTADRPPELRGCGAN 109 (432)
T ss_pred EEE-EecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHHH-Hhc--------ccCCcEEEEeCCCCHHHhCCCCC
Confidence 444 467999999999999997 6444444433233334444443 222 568999988754332 133445
Q ss_pred CchhHhHHHcCCCCcEEE--eeCC-------HHHHHHHHHHHHc-CCCcEEEEECccc
Q psy10429 126 HSQCFGAWFTQCPGLKVV--SPYN-------SEDAKGLLKAAIR-DPDPVVFLENELL 173 (207)
Q Consensus 126 hs~~~~a~~~~iPgl~v~--~P~~-------~~e~~~ll~~a~~-~~~P~~i~~~k~l 173 (207)
+..+..++++.+=-...- .|.+ +.....+++.|.. .++||+|-.|...
T Consensus 110 q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 110 QTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred cccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 555666888877655433 3443 2345556666665 4699999877544
No 156
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.42 E-value=3.5 Score=38.83 Aligned_cols=115 Identities=14% Similarity=0.013 Sum_probs=69.3
Q ss_pred hhhcCCCceeeccc-h-hHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-
Q psy10429 42 WKKYGDKRVLDTPI-T-EIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN- 116 (207)
Q Consensus 42 ~~~~g~~r~~~~gI-a-E~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~- 116 (207)
.-.. |.+|++.+- . --..++.|+|++++. -++++.+..- .|.+ ....|- .++ +.++|++++.-+
T Consensus 407 ~~~~-p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~-~~~eL~-ta~--------~~~lpv~~vV~NN 475 (574)
T PRK06882 407 PFDK-PRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGDGSIQM-NIQELS-TAK--------QYDIPVVIVSLNN 475 (574)
T ss_pred cccC-CCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEEEcchhhhc-cHHHHH-HHH--------HhCCCeEEEEEEC
Confidence 3344 578887542 3 333577888888774 2445544432 2333 233333 344 568898887654
Q ss_pred CCCC----------CC---CCC--CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcC-CCcEEEE
Q psy10429 117 GAAS----------GV---AAQ--HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRD-PDPVVFL 168 (207)
Q Consensus 117 G~~~----------g~---~~h--hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~-~~P~~i~ 168 (207)
|... +. ... +..++..+-+.+ |++-+.-.+++|.+.+++.+++. ++|++|-
T Consensus 476 ~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lie 542 (574)
T PRK06882 476 RFLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAY-GHVGIQIDTPDELEEKLTQAFSIKDKLVFVD 542 (574)
T ss_pred chhHHHHHHHHHhcCCcccccCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 4321 00 011 123344555655 77778889999999999999986 8898873
No 157
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=91.32 E-value=1.8 Score=41.01 Aligned_cols=152 Identities=16% Similarity=0.083 Sum_probs=84.8
Q ss_pred HHHHHHHHhcC--CcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHH
Q psy10429 8 NSALDEEMARD--EKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFS 84 (207)
Q Consensus 8 ~~~L~~~~~~~--~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~ 84 (207)
.++|.+.+++. ..+|.+-.+- ...+.+.|.+.-+.=+++. .-.|++.+.+|-|+|+. |..-++...+.--+
T Consensus 6 a~~l~~~L~~~GV~~vFGvpG~~-----~~~l~dal~~~~~~i~~i~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~ 79 (597)
T PRK08273 6 ADFILERLREWGVRRVFGYPGDG-----INGLLGALGRADDKPEFVQ-ARHEEMAAFMAVAHAKFTGEVGVCLATSGPGA 79 (597)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCc-----hHHHHHHHHhccCCCeEEE-eccHHHHHHHHHHHHHHhCCCEEEEECCCccH
Confidence 45666666654 3344443221 1233455543221234554 46899999999999987 54444444433334
Q ss_pred HHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCchhHhHHHcCCC-CcEEEeeCCHHHHHHHHH----H
Q psy10429 85 MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQCFGAWFTQCP-GLKVVSPYNSEDAKGLLK----A 157 (207)
Q Consensus 85 ~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~~~~a~~~~iP-gl~v~~P~~~~e~~~ll~----~ 157 (207)
..+..-|. ++- ..+.||++++..-... +.+.++..+..++++.+= -. .....+++++...++ .
T Consensus 80 ~n~~~gi~-~A~--------~d~vPvl~I~G~~~~~~~~~~~~q~~d~~~l~~~vt~k~-~~~v~~~~~~~~~l~~A~~~ 149 (597)
T PRK08273 80 IHLLNGLY-DAK--------LDHVPVVAIVGQQARAALGGHYQQEVDLQSLFKDVAGAF-VQMVTVPEQLRHLVDRAVRT 149 (597)
T ss_pred HHHHHHHH-HHH--------hcCCCEEEEecCCchhhcCCCCCCccCHHHHHHHHHHHH-eeEeCCHHHHHHHHHHHHHH
Confidence 44555543 222 5689999886432221 334444445557777653 22 334555666655554 4
Q ss_pred HHcCCCcEEEEECccccc
Q psy10429 158 AIRDPDPVVFLENELLYG 175 (207)
Q Consensus 158 a~~~~~P~~i~~~k~l~~ 175 (207)
|...++|+||-.|.-+..
T Consensus 150 A~~~~gPV~i~iP~Dv~~ 167 (597)
T PRK08273 150 ALAERTVTAVILPNDVQE 167 (597)
T ss_pred HhhCCCCEEEEeCcchhh
Confidence 444578999988866553
No 158
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=91.30 E-value=2.4 Score=35.74 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=58.4
Q ss_pred HHHHHHHHHhc------CCccEEEechh-hHH-HHHHHHHHHHHhhhhhhccCCccCC-EEEEeCCCCC-CCCC--CCC-
Q psy10429 60 FAGIAVGAAMA------GLRPVCEFMTF-NFS-MQAIDHIINSAAKTFYMSAGTVNVP-IVFRGPNGAA-SGVA--AQH- 126 (207)
Q Consensus 60 ~vg~A~GlA~~------G~~pi~~~~~~-~~~-~ra~dqi~~~~a~~~~~~~~~~~~p-vvi~~~~G~~-~g~~--~hh- 126 (207)
-++.|+|+|+. ..++|+ +..- .+. ...++.+. .++ ..++| ++++.-+... .... ...
T Consensus 110 gl~~avG~Ala~~~~~~~~~v~~-i~GDG~~~~G~~~eal~-~a~--------~~~l~~li~vvdnN~~~~~~~~~~~~~ 179 (255)
T cd02012 110 GLSVAVGMALAEKLLGFDYRVYV-LLGDGELQEGSVWEAAS-FAG--------HYKLDNLIAIVDSNRIQIDGPTDDILF 179 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEE-EECcccccccHHHHHHH-HHH--------HcCCCcEEEEEECCCccccCcHhhccC
Confidence 45677777765 334443 4421 221 12455544 444 45775 5555544332 1111 111
Q ss_pred chhHhHHHcCCCCcEEEeeC--CHHHHHHHHHHHHcC-CCcEEEEE
Q psy10429 127 SQCFGAWFTQCPGLKVVSPY--NSEDAKGLLKAAIRD-PDPVVFLE 169 (207)
Q Consensus 127 s~~~~a~~~~iPgl~v~~P~--~~~e~~~ll~~a~~~-~~P~~i~~ 169 (207)
..+...+++.+ |++++.-. |.++....++.+.+. ++|++|.-
T Consensus 180 ~~~~~~~~~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~ 224 (255)
T cd02012 180 TEDLAKKFEAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIA 224 (255)
T ss_pred chhHHHHHHHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEE
Confidence 12345777777 89888877 899999999999887 89998853
No 159
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=91.28 E-value=11 Score=33.87 Aligned_cols=110 Identities=21% Similarity=0.170 Sum_probs=64.9
Q ss_pred CCceeeccchhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCcc-CCEEEEeC-CCCCC--
Q psy10429 47 DKRVLDTPITEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVN-VPIVFRGP-NGAAS-- 120 (207)
Q Consensus 47 ~~r~~~~gIaE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~-~pvvi~~~-~G~~~-- 120 (207)
+.+|+.+|-- -+.+++|.|+|++- -++++.+..- .|++. ...+- .++ ..+ .|++++.- +|...
T Consensus 214 ~~~f~~~GsM-G~a~p~AlG~ala~p~r~Vv~i~GDGsflm~-~~eL~-t~~--------~~~~~nli~VVlNNg~~~~~ 282 (361)
T TIGR03297 214 ARDFLTVGSM-GHASQIALGLALARPDQRVVCLDGDGAALMH-MGGLA-TIG--------TQGPANLIHVLFNNGAHDSV 282 (361)
T ss_pred CCceEeechh-hhHHHHHHHHHHHCCCCCEEEEEChHHHHHH-HHHHH-HHH--------HhCCCCeEEEEEcCcccccc
Confidence 3567764332 23456888887763 3566666532 22222 22222 233 334 47776654 34421
Q ss_pred CCCC--CCchhHhHHHcCCCCc-EEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 GVAA--QHSQCFGAWFTQCPGL-KVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 g~~~--hhs~~~~a~~~~iPgl-~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
++-. .+..++..+.+.+ |. ..+...+++|...+++++.+.++|++|.
T Consensus 283 g~q~~~~~~~d~~~iA~a~-G~~~~~~v~~~~eL~~al~~a~~~~gp~lIe 332 (361)
T TIGR03297 283 GGQPTVSQHLDFAQIAKAC-GYAKVYEVSTLEELETALTAASSANGPRLIE 332 (361)
T ss_pred CCcCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 2111 1234556777777 64 5788899999999999999999999874
No 160
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=91.13 E-value=2.8 Score=39.58 Aligned_cols=109 Identities=21% Similarity=0.205 Sum_probs=66.4
Q ss_pred ceeec-cc-hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC--
Q psy10429 49 RVLDT-PI-TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG-- 121 (207)
Q Consensus 49 r~~~~-gI-aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g-- 121 (207)
+|+.. +. +=-..++.|.|++++. -++++.+..- .|.+. ...+. .+. +.++|++++..+ +....
T Consensus 429 ~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i~GDGsf~~~-~~el~-ta~--------~~~l~~~~vv~NN~~~g~~~ 498 (578)
T PRK06112 429 RFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVGDGGFAHV-WAELE-TAR--------RMGVPVTIVVLNNGILGFQK 498 (578)
T ss_pred eEECCCCccccccHHHHHHHHHhhCCCCcEEEEEcchHHHhH-HHHHH-HHH--------HhCCCeEEEEEeCCccCCEE
Confidence 56653 22 2345677888888764 3566655532 23332 33332 344 568898887654 32110
Q ss_pred ------CCCC------CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 122 ------VAAQ------HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 122 ------~~~h------hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
.+.. +..++..+.+.+ |.+-+.-.+++|.+..++.+++.++|++|-
T Consensus 499 ~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 556 (578)
T PRK06112 499 HAETVKFGTHTDACHFAAVDHAAIARAC-GCDGVRVEDPAELAQALAAAMAAPGPTLIE 556 (578)
T ss_pred eccccccCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0111 123445666666 777778889999999999999999999884
No 161
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=91.04 E-value=3.1 Score=39.14 Aligned_cols=111 Identities=19% Similarity=0.105 Sum_probs=67.0
Q ss_pred CCceeeccc-h-hHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPI-T-EIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI-a-E~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|+..+- . =-..++.|+|+++.. -++++.+..- .|.+.. ..|- -+. +.++|++++.-+ |+..
T Consensus 411 p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~m~~-~eL~-Ta~--------~~~l~i~ivV~NN~~yg~ 480 (572)
T PRK06456 411 PRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTG-TNLA-TAV--------DEHIPVISVIFDNRTLGL 480 (572)
T ss_pred CCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEEEccchHhcch-HHHH-HHH--------HhCCCeEEEEEECCchHH
Confidence 567776422 1 112346777777764 3556655532 233332 2232 333 568888877553 3321
Q ss_pred -C-------CCC------CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 -G-------VAA------QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 -g-------~~~------hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
. +.. ....++.++.+.+ |..-+...+++|.+.+++++.+.++|++|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 541 (572)
T PRK06456 481 VRQVQDLFFGKRIVGVDYGPSPDFVKLAEAF-GALGFNVTTYEDIEKSLKSAIKEDIPAVIR 541 (572)
T ss_pred HHHHHHHhhCCCcccccCCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 110 1123456677777 888888999999999999999999999873
No 162
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=91.02 E-value=5.9 Score=36.92 Aligned_cols=111 Identities=23% Similarity=0.171 Sum_probs=66.9
Q ss_pred CCceeeccc-hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC--
Q psy10429 47 DKRVLDTPI-TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS-- 120 (207)
Q Consensus 47 ~~r~~~~gI-aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~-- 120 (207)
|.+|+.... +=-..++.|+|+++.. -++++.+..- .|.+ ....|. .+. +.++|++++.-+ |+..
T Consensus 398 ~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~-~~~eL~-ta~--------~~~lp~~~vv~NN~~~~~~ 467 (530)
T PRK07092 398 QGSFYTMASGGLGYGLPAAVGVALAQPGRRVIGLIGDGSAMY-SIQALW-SAA--------QLKLPVTFVILNNGRYGAL 467 (530)
T ss_pred CCceEccCCCcccchHHHHHHHHHhCCCCeEEEEEeCchHhh-hHHHHH-HHH--------HhCCCcEEEEEeChHHHHH
Confidence 567875321 1124556788887763 2455555532 2333 233332 344 568888777543 4221
Q ss_pred -------CCCCC-----CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 -------GVAAQ-----HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 -------g~~~h-----hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
+.+.+ +..++..+.+.+ |+..+.-.+++|.+.+++.+++.++|++|-
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~al~~a~~~~~p~lie 526 (530)
T PRK07092 468 RWFAPVFGVRDVPGLDLPGLDFVALARGY-GCEAVRVSDAAELADALARALAADGPVLVE 526 (530)
T ss_pred HHHHHhhCCCCCCCCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 11111 223455666666 888888899999999999999999999884
No 163
>PRK07064 hypothetical protein; Provisional
Probab=90.97 E-value=4 Score=38.11 Aligned_cols=111 Identities=19% Similarity=0.221 Sum_probs=65.8
Q ss_pred CCceeeccc-hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeC-CCCCC--
Q psy10429 47 DKRVLDTPI-TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP-NGAAS-- 120 (207)
Q Consensus 47 ~~r~~~~gI-aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~-~G~~~-- 120 (207)
|.+++.++- +=-..++.|+|++++. -++++.+..- .|.+. ...|- .+. +.++|++++.- +|+..
T Consensus 396 p~~~~~~~~g~mG~~lpaAiGa~lA~p~~~vv~i~GDGsf~m~-~~eL~-Ta~--------~~~lpv~ivV~NN~~yg~~ 465 (544)
T PRK07064 396 PRANVHALGGGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLN-LGELA-TAV--------QENANMVIVLMNDGGYGVI 465 (544)
T ss_pred CCceeccCCCccccccchhhhhhhhCcCCcEEEEEcchHhhhh-HHHHH-HHH--------HhCCCeEEEEEeCChhHHH
Confidence 455554321 1223456677777664 3566665532 22332 22332 233 56889888754 34321
Q ss_pred --------C----CCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 --------G----VAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 --------g----~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
+ ....+..++..+.+.+ |.+-..-.+++|++..++.+++.++|++|-
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 524 (544)
T PRK07064 466 RNIQDAQYGGRRYYVELHTPDFALLAASL-GLPHWRVTSADDFEAVLREALAKEGPVLVE 524 (544)
T ss_pred HHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHcCCCCEEEE
Confidence 1 0111233455666666 788888899999999999999999999884
No 164
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=90.79 E-value=11 Score=35.25 Aligned_cols=152 Identities=14% Similarity=0.015 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCCcEEEEecCCCccCCc-hhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHH
Q psy10429 8 NSALDEEMARDEKVFLLGEEVALYDGA-YKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSM 85 (207)
Q Consensus 8 ~~~L~~~~~~~~~vv~~~~D~~~~~g~-~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~ 85 (207)
.+.|.+.+++.---.++|- .|+. ..+.+.+.+ .+.-|++. .--|++..-+|-|+|+. |...++...+.--+.
T Consensus 3 ~~~l~~~L~~~Gv~~vFGv----pG~~~~~l~~al~~-~~~i~~v~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 76 (535)
T TIGR03394 3 AEALLRALKDRGAQEMFGI----PGDFALPFFKVIEE-TGILPLHT-LSHEPAVGFAADAAARYRGTLGVAAVTYGAGAF 76 (535)
T ss_pred HHHHHHHHHHcCCCEEEEC----CCcccHHHHHHHhh-CCCCeEEc-ccCcchHHHHHhHHHHhhCCceEEEEecchHHH
Confidence 4566666665544344432 2221 233344533 21135554 68999999999999997 555554444333344
Q ss_pred HHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCC--CCch----hHhHHHcCCCCcEEEeeCCHHH----HHH
Q psy10429 86 QAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAA--QHSQ----CFGAWFTQCPGLKVVSPYNSED----AKG 153 (207)
Q Consensus 86 ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~--hhs~----~~~a~~~~iPgl~v~~P~~~~e----~~~ 153 (207)
.+..-|. ++. ..+.||++++..-... +.+. ||.. ....+++.+=-.... ..++++ ...
T Consensus 77 n~~~gia-~A~--------~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~-v~~~~~~~~~~~~ 146 (535)
T TIGR03394 77 NMVNAIA-GAY--------AEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAV-LDDPATAPAEIAR 146 (535)
T ss_pred hhhhHHH-HHh--------hcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEE-eCChHHhHHHHHH
Confidence 4555443 222 5689999987543322 2222 2321 124777766433222 234444 455
Q ss_pred HHHHHHcCCCcEEEEECccccc
Q psy10429 154 LLKAAIRDPDPVVFLENELLYG 175 (207)
Q Consensus 154 ll~~a~~~~~P~~i~~~k~l~~ 175 (207)
+++.|...++|+||-.|..+..
T Consensus 147 A~~~a~~~~gPv~i~iP~Dv~~ 168 (535)
T TIGR03394 147 VLGSARELSRPVYLEIPRDMVN 168 (535)
T ss_pred HHHHHHHCCCCEEEEechhhcc
Confidence 6666666789999988876553
No 165
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=90.68 E-value=7.9 Score=36.46 Aligned_cols=110 Identities=22% Similarity=0.283 Sum_probs=66.9
Q ss_pred CCceeeccc-h-hHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC
Q psy10429 47 DKRVLDTPI-T-EIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG 121 (207)
Q Consensus 47 ~~r~~~~gI-a-E~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g 121 (207)
+.+|+..+- . =-..++.|+|+++.. -++++.+..- .|.+. ...|- .+. +.++|++++.-+ ++. |
T Consensus 398 ~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~GDGsf~m~-~~eL~-Ta~--------~~~lpv~ivV~NN~~~-g 466 (574)
T PRK09124 398 KRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALSGDGGFSML-MGDFL-SLV--------QLKLPVKIVVFNNSVL-G 466 (574)
T ss_pred CCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEecCcHHhcc-HHHHH-HHH--------HhCCCeEEEEEeCCcc-c
Confidence 467775421 1 123577888888764 3566666642 23332 33333 233 568888777543 322 1
Q ss_pred C--------C-----C-CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 122 V--------A-----A-QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 122 ~--------~-----~-hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
. + . -+..++.++.+.+ |++-..-.+++|.+..++++++.++|++|-
T Consensus 467 ~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 526 (574)
T PRK09124 467 FVAMEMKAGGYLTDGTDLHNPDFAAIAEAC-GITGIRVEKASELDGALQRAFAHDGPALVD 526 (574)
T ss_pred cHHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1 0 0 0112344555555 888888899999999999999999999884
No 166
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=90.68 E-value=2.5 Score=39.50 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=71.6
Q ss_pred ceeeccchhHHHHHHHHHHHhc-CCccEEEec-hhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC----CC
Q psy10429 49 RVLDTPITEIGFAGIAVGAAMA-GLRPVCEFM-TFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS----GV 122 (207)
Q Consensus 49 r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~-~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~----g~ 122 (207)
|++ ..--|++.+.+|-|.|+. | +.++... .+. +..+..-|.+ |+ ..+.||++++..-... +.
T Consensus 41 ~~v-~~rhE~~A~~mAdgyar~tg-~gv~~~t~GPG-~~n~~~gla~--A~-------~d~~Pvl~I~G~~~~~~~~~~~ 108 (539)
T TIGR03393 41 CWV-GCANELNAAYAADGYARCKG-AAALLTTFGVG-ELSAINGIAG--SY-------AEHLPVIHIVGAPGTAAQQRGE 108 (539)
T ss_pred cEe-ccCCcccHHHHhhhhhhhcC-ceEEEEecCcc-HHHHhhHHHH--Hh-------hccCCEEEEECCCCcchhhcCc
Confidence 444 557899999999999997 7 5665543 443 3345554442 22 5689999886432211 11
Q ss_pred CCCCc------hhHhHHHcCCCCcE-EEeeCC-HHHHHHHHHHHHcCCCcEEEEECcccccc
Q psy10429 123 AAQHS------QCFGAWFTQCPGLK-VVSPYN-SEDAKGLLKAAIRDPDPVVFLENELLYGV 176 (207)
Q Consensus 123 ~~hhs------~~~~a~~~~iPgl~-v~~P~~-~~e~~~ll~~a~~~~~P~~i~~~k~l~~~ 176 (207)
..||. |+...+++.+--.. ++.|.+ +.+...+++.|+..++|+||-.|+-+...
T Consensus 109 ~~~~~~~~~~~q~~~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~~~gPv~l~iP~Dv~~~ 170 (539)
T TIGR03393 109 LLHHTLGDGDFRHFYRMAAEVTVAQAVLTEQNATAEIDRVITTALRERRPGYLMLPVDVAAK 170 (539)
T ss_pred eeeeecCCCchHHHHHHhhceEEEEEEeChhhhHHHHHHHHHHHHhcCCCEEEEecccccCC
Confidence 11221 22334554442221 225666 78899999999988999999888766543
No 167
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.44 E-value=7.8 Score=36.55 Aligned_cols=111 Identities=17% Similarity=0.041 Sum_probs=66.9
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|++.+- +=-..+..|+|+++.- -+|++.+..- .|.+. ..-|- -+. +.++|++++..+ ++..
T Consensus 413 p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~-~~eL~-Ta~--------r~~lpv~ivV~NN~~y~~ 482 (574)
T PRK06466 413 PNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMN-IQELS-TCL--------QYGLPVKIINLNNGALGM 482 (574)
T ss_pred CCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEEEcchhhhcc-HHHHH-HHH--------HhCCCeEEEEEeCCccHH
Confidence 467776532 1223356677877763 3566666642 23333 22222 233 678898887654 3321
Q ss_pred ---------CC---CCC--CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcC-CCcEEEE
Q psy10429 121 ---------GV---AAQ--HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRD-PDPVVFL 168 (207)
Q Consensus 121 ---------g~---~~h--hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~-~~P~~i~ 168 (207)
++ +.. +..++.++.+.+ |.+-+.-.+++|+..+++++++. ++|++|-
T Consensus 483 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~p~lIe 544 (574)
T PRK06466 483 VRQWQDMQYEGRHSHSYMESLPDFVKLAEAY-GHVGIRITDLKDLKPKLEEAFAMKDRLVFID 544 (574)
T ss_pred HHHHHHHhcCCceeecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 00 011 112445566666 78888899999999999999986 9999873
No 168
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=90.40 E-value=4.2 Score=38.48 Aligned_cols=151 Identities=21% Similarity=0.170 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCcEEEEecCCCccCCc-hhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHHHH
Q psy10429 9 SALDEEMARDEKVFLLGEEVALYDGA-YKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFSMQ 86 (207)
Q Consensus 9 ~~L~~~~~~~~~vv~~~~D~~~~~g~-~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~~r 86 (207)
+.|.+.+++..=-.++|- +|+. ..+.+.|.+. + -|++- .--||+...+|.|+|+. |..-+|-..+.--+..
T Consensus 6 ~~lv~~L~~~GV~~VFGi----PG~~i~~~~dal~~~-~-i~~I~-~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN 78 (550)
T COG0028 6 EALVEALEANGVDTVFGI----PGGSILPLYDALYDS-G-IRHIL-VRHEQGAAFAADGYARATGKPGVCLVTSGPGATN 78 (550)
T ss_pred HHHHHHHHHcCCcEEEeC----CCccHHHHHHHHHhC-C-CcEEE-eccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHH
Confidence 455555555544444442 3333 2334555544 2 35654 46899999999999996 6655655554333434
Q ss_pred HHHHHHHHHhhhhhhccCCccCCEEEEeCCCCC--CCCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----
Q psy10429 87 AIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAA--SGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR---- 160 (207)
Q Consensus 87 a~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~--~g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~---- 160 (207)
+..-|- ++- ....||++++..=.+ .|.+.+|..+..++++.+--.. +...+++|+-..++.|++
T Consensus 79 ~~tgla-~A~--------~d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~tk~~-~~v~~~~~ip~~i~~Af~~A~s 148 (550)
T COG0028 79 LLTGLA-DAY--------MDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPITKYN-FEVRSPEDIPEVVARAFRIALS 148 (550)
T ss_pred HHHHHH-HHH--------hcCCCEEEEeCCccccccCcchhhhcchhhHhhhhheeE-EEeCCHHHHHHHHHHHHHHHhc
Confidence 444443 322 568899988643222 3556677666778888885443 445667777777776654
Q ss_pred -CCCcEEEEECcccccc
Q psy10429 161 -DPDPVVFLENELLYGV 176 (207)
Q Consensus 161 -~~~P~~i~~~k~l~~~ 176 (207)
.++|+++-.|+-....
T Consensus 149 grpGpv~i~iP~Dv~~~ 165 (550)
T COG0028 149 GRPGPVVVDLPKDVLAA 165 (550)
T ss_pred CCCceEEEEcChhHhhc
Confidence 3689999888765544
No 169
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=90.39 E-value=1.8 Score=38.71 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=64.0
Q ss_pred eccchhHHHHHHHHHHHh--cCCcc-EEEechhhHH---HHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCCCCC
Q psy10429 52 DTPITEIGFAGIAVGAAM--AGLRP-VCEFMTFNFS---MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASGVAA 124 (207)
Q Consensus 52 ~~gIaE~~~vg~A~GlA~--~G~~p-i~~~~~~~~~---~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g~~~ 124 (207)
+.+|.-|-..++++++|. .|... |+.+++.+-. .--+|. .|.++ .+++|||++..+ +...+..-
T Consensus 135 ~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEa-lN~A~--------v~klPvvf~ieNN~yAiSvp~ 205 (358)
T COG1071 135 SGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEA-LNFAA--------VWKLPVVFVIENNQYAISVPR 205 (358)
T ss_pred CceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHH-HHHHH--------HhcCCEEEEEecCCceeecch
Confidence 445555554444444444 46444 5555544322 111333 25666 689999999875 44433211
Q ss_pred C-Cc-hhH---hHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----CCCcEEEEEC
Q psy10429 125 Q-HS-QCF---GAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----DPDPVVFLEN 170 (207)
Q Consensus 125 h-hs-~~~---~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~~~P~~i~~~ 170 (207)
. ++ ... -+.--.|||++| .=.|...++...++|++ .++|++|-.-
T Consensus 206 ~~q~~~~~~~~ra~aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE~~ 259 (358)
T COG1071 206 SRQTAAEIIAARAAAYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIEAV 259 (358)
T ss_pred hhcccchhHHhhhhccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 1 11 111 245558999999 88888888887777765 5789998544
No 170
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=90.22 E-value=3.6 Score=32.87 Aligned_cols=145 Identities=14% Similarity=0.092 Sum_probs=76.2
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccc--hhHHHHHHHHHHHhcC-CccEEEechh-h
Q psy10429 7 LNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPI--TEIGFAGIAVGAAMAG-LRPVCEFMTF-N 82 (207)
Q Consensus 7 ~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~~~-~ 82 (207)
+.+.|.+.+..+ .+++ .|.+.. .+ ....+.-.. +.+++..+- +=-..++.|.|+++.- -++++.+..- .
T Consensus 7 ~~~~l~~~l~~~-~iiv--~d~g~~--~~-~~~~~~~~~-~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~ 79 (183)
T cd02005 7 LWQQVQNFLKPN-DILV--AETGTS--WF-GALDLKLPK-GTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGS 79 (183)
T ss_pred HHHHHHHhcCCC-CEEE--ECCchH--HH-hhhhccCCC-CCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCch
Confidence 445555555432 3333 444432 12 123333333 467776532 1223456677776653 2555555522 2
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCccCCEEEEeC-CCCCC------CCCCC----CchhHhHHHcCCC---CcEEEeeCCH
Q psy10429 83 FSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP-NGAAS------GVAAQ----HSQCFGAWFTQCP---GLKVVSPYNS 148 (207)
Q Consensus 83 ~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~-~G~~~------g~~~h----hs~~~~a~~~~iP---gl~v~~P~~~ 148 (207)
|.+ ....+. .++ +.++|++++.- ++... +.... ...+...+...+= +.+.+...++
T Consensus 80 f~~-~~~el~-ta~--------~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~ 149 (183)
T cd02005 80 FQM-TVQELS-TMI--------RYGLNPIIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTE 149 (183)
T ss_pred hhc-cHHHHH-HHH--------HhCCCCEEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHHHhCCCccccEEEecCH
Confidence 333 233343 233 45677776654 33321 01001 1223445555552 3777888999
Q ss_pred HHHHHHHHHHHc-CCCcEEEE
Q psy10429 149 EDAKGLLKAAIR-DPDPVVFL 168 (207)
Q Consensus 149 ~e~~~ll~~a~~-~~~P~~i~ 168 (207)
+|.+.+++++++ .++|++|-
T Consensus 150 ~el~~al~~a~~~~~~p~lie 170 (183)
T cd02005 150 GELDEALKDALFNRDKLSLIE 170 (183)
T ss_pred HHHHHHHHHHHhcCCCcEEEE
Confidence 999999999998 79999884
No 171
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=90.19 E-value=9.7 Score=35.96 Aligned_cols=111 Identities=14% Similarity=0.068 Sum_probs=63.9
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeC-CCCCCC
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP-NGAASG 121 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~-~G~~~g 121 (207)
|.+++..+. +=-..++.|.|.++.- -++++.+..- .|.+. ...| ..+. +.++|++++.- +|...-
T Consensus 398 ~~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDGsf~m~-~~eL-~Tav--------r~~lpi~~VV~NN~~yg~ 467 (575)
T TIGR02720 398 KNKWITSNLFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMT-MQDL-LTQV--------QYHLPVINIVFSNCTYGF 467 (575)
T ss_pred CCeEEcCCCcchhhchHHHHHHHHHhCCCCcEEEEEcccHHHhh-HHHH-HHHH--------HhCCCeEEEEEeCCccHH
Confidence 567776652 1122344555555543 2556655532 23333 2223 3444 56889887744 443310
Q ss_pred --------CCCCC-----chhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHH--cCCCcEEEE
Q psy10429 122 --------VAAQH-----SQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAI--RDPDPVVFL 168 (207)
Q Consensus 122 --------~~~hh-----s~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~--~~~~P~~i~ 168 (207)
.+.+. ..++.++.+.+ |.+-..-.+++|.+..++.++ +.++|++|-
T Consensus 468 i~~~~~~~~~~~~~~~~~~~df~~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~p~lie 528 (575)
T TIGR02720 468 IKDEQEDTNQPLIGVDFNDADFAKIAEGV-GAVGFRVNKIEQLPAVFEQAKAIKQGKPVLID 528 (575)
T ss_pred HHHHHHHhCCCcccccCCCCCHHHHHHHC-CCEEEEeCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 11111 22345666666 777777799999999999999 789999873
No 172
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=90.10 E-value=4.3 Score=38.63 Aligned_cols=114 Identities=20% Similarity=0.230 Sum_probs=67.3
Q ss_pred CCceeeccchhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC--C
Q psy10429 47 DKRVLDTPITEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS--G 121 (207)
Q Consensus 47 ~~r~~~~gIaE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~--g 121 (207)
|.+++++..+=-.-++.|.|+++.. -++++.+..- .|.+.....|.+ +. +.++|++++.-+ +.+. +
T Consensus 395 p~~~~~~~~~mG~~~~~AiGa~~a~p~~~Vv~i~GDG~f~~~g~~eL~t-av--------~~~~~i~~vVlnN~~~g~~~ 465 (595)
T TIGR03336 395 PLGTVDTTLCMGASIGVASGLSKAGEKQRIVAFIGDSTFFHTGIPGLIN-AV--------YNKANITVVILDNRITAMTG 465 (595)
T ss_pred CccccceeeccCchHHHHhhhhhcCCCCCEEEEeccchhhhcCHHHHHH-HH--------HcCCCeEEEEEcCcceeccC
Confidence 4566665444444456777777653 4677766642 222223444543 34 468888777543 2221 1
Q ss_pred CCCC------------CchhHhHHHcCC--CCcEEEeeCCHHHHHHHHHHHHcCCCcEEEEE
Q psy10429 122 VAAQ------------HSQCFGAWFTQC--PGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLE 169 (207)
Q Consensus 122 ~~~h------------hs~~~~a~~~~i--Pgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~~ 169 (207)
...+ +..++.++.+.+ +...|..|.+-+|...+++++++.++|++|..
T Consensus 466 ~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~~~gp~li~v 527 (595)
T TIGR03336 466 HQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALAAEGVSVIIA 527 (595)
T ss_pred CCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 1000 123344555544 56677788887888999999999999998754
No 173
>PRK07524 hypothetical protein; Provisional
Probab=89.98 E-value=11 Score=35.06 Aligned_cols=111 Identities=20% Similarity=0.180 Sum_probs=66.7
Q ss_pred CCceee-cc-c-hhHHHHHHHHHHHhcC-CccEEEech-hhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC
Q psy10429 47 DKRVLD-TP-I-TEIGFAGIAVGAAMAG-LRPVCEFMT-FNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS 120 (207)
Q Consensus 47 ~~r~~~-~g-I-aE~~~vg~A~GlA~~G-~~pi~~~~~-~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~ 120 (207)
|.+|++ .+ . +=-..++.|.|.+++. -++++.+.. ..|.+..-| |- .+. +.++|++++.-+ +...
T Consensus 396 p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~e-l~-ta~--------~~~lpi~~vV~NN~~~g 465 (535)
T PRK07524 396 PRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPE-LA-SAV--------EADLPLIVLLWNNDGYG 465 (535)
T ss_pred CCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHH-HH-HHH--------HhCCCeEEEEEECCchH
Confidence 567886 21 1 1122456777877763 345555553 233443322 33 444 568998887553 3321
Q ss_pred --------CCCC-----CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 --------GVAA-----QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 --------g~~~-----hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
.+.. .+..++.++.+.+ |++-..-.+++|.+..++++++.++|++|-
T Consensus 466 ~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 525 (535)
T PRK07524 466 EIRRYMVARDIEPVGVDPYTPDFIALARAF-GCAAERVADLEQLQAALRAAFARPGPTLIE 525 (535)
T ss_pred HHHHHHHHhcCCccccCCCCCCHHHHHHHC-CCcEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0111 1223445666666 677777789999999999999999999884
No 174
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=89.89 E-value=3.7 Score=33.34 Aligned_cols=97 Identities=20% Similarity=0.193 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhc----C-CccEEEechhhHH-H--HHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCchhH
Q psy10429 59 GFAGIAVGAAMA----G-LRPVCEFMTFNFS-M--QAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCF 130 (207)
Q Consensus 59 ~~vg~A~GlA~~----G-~~pi~~~~~~~~~-~--ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs~~~ 130 (207)
.-+++|+|+|+. | -++++.+.. |-. + ..+|.+. .++ ....|++++..+....-.++.. ..
T Consensus 79 ~gl~~A~G~Ala~k~~~~~~~vv~~~G-DG~~~eG~~~Eal~-~A~--------~~~~~li~vvdnN~~~~~~~~~--~~ 146 (195)
T cd02007 79 TSISAALGMAVARDLKGKKRKVIAVIG-DGALTGGMAFEALN-NAG--------YLKSNMIVILNDNEMSISPNVG--TP 146 (195)
T ss_pred hhHHHHHHHHHHHHHhCCCCeEEEEEc-ccccccChHHHHHH-HHH--------HhCCCEEEEEECCCcccCCCCC--CH
Confidence 345667777765 2 134444443 222 1 3344443 455 3488988877653331111111 23
Q ss_pred hHHHcCCCCcEEE---eeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 131 GAWFTQCPGLKVV---SPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 131 ~a~~~~iPgl~v~---~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
...++. -|+.+. ...|.++....++.+.+.++|++|.
T Consensus 147 ~~~~~a-~G~~~~~~vdG~d~~~l~~a~~~a~~~~~P~~I~ 186 (195)
T cd02007 147 GNLFEE-LGFRYIGPVDGHNIEALIKVLKEVKDLKGPVLLH 186 (195)
T ss_pred HHHHHh-cCCCccceECCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 445554 355544 4567888888888888888999985
No 175
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=89.79 E-value=10 Score=35.99 Aligned_cols=117 Identities=17% Similarity=0.129 Sum_probs=66.0
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
+.+|+..+. +=-..++.|+|++++- -++++.+..- .|.+.+...|- -+.+. |. . ..++|++++.-+ +...
T Consensus 405 ~~~~~~s~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~~EL~-Ta~r~-~~-~-~~~lpviivV~NN~~~~~ 480 (597)
T PRK08273 405 GMMASLSGTLATMGPAVPYAIAAKFAHPDRPVIALVGDGAMQMNGMAELI-TVAKY-WR-Q-WSDPRLIVLVLNNRDLNQ 480 (597)
T ss_pred CCeEEecCccccccchHHHHHHHHHhCCCCcEEEEEcchhHhccchHHHH-HHHHH-hh-c-ccCCCEEEEEEeCCcchH
Confidence 357776643 2223344777777763 3556655532 23333222222 22210 00 0 017888877643 4321
Q ss_pred --------CCCCCC-------chhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 --------GVAAQH-------SQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 --------g~~~hh-------s~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
.+...+ ..++.++.+.+ |++-+.-.+.+|.+..++++++.++|++|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 542 (597)
T PRK08273 481 VTWEQRVMEGDPKFEASQDLPDVPYARFAELL-GLKGIRVDDPEQLGAAWDEALAADRPVVLE 542 (597)
T ss_pred HHHHHHHhcCCCcccccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 011111 12345666666 888889999999999999999999999873
No 176
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=89.74 E-value=9 Score=40.99 Aligned_cols=150 Identities=13% Similarity=0.050 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCccCC-chhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEE-echhhH
Q psy10429 6 ALNSALDEEMARDEKVFLLGEEVALYDG-AYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCE-FMTFNF 83 (207)
Q Consensus 6 a~~~~L~~~~~~~~~vv~~~~D~~~~~g-~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~-~~~~~~ 83 (207)
.+.+.|.+.+++.-=-.+++. +|+ ...+.+.+.+ .+.-|++ ....|+++.-+|.|+|+.--+|-+. ..+..-
T Consensus 302 ~~a~~lv~~L~~~GV~~vFg~----PG~~~~pL~dAl~~-~~~i~~i-~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG 375 (1655)
T PLN02980 302 VWASLIIEECTRLGLTYFCVA----PGSRSSPLAIAASN-HPLTTCI-ACFDERSLAFHALGYARGSLKPAVVITSSGTA 375 (1655)
T ss_pred HHHHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHh-CCCCeEE-eccCcchHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 466777777765533223322 112 1133344432 2223444 5689999999999999985455443 333333
Q ss_pred HHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCCCCCchhHhHHHcCCCCcEEEe--eCCH-------HHHH
Q psy10429 84 SMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVAAQHSQCFGAWFTQCPGLKVVS--PYNS-------EDAK 152 (207)
Q Consensus 84 ~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~~hhs~~~~a~~~~iPgl~v~~--P~~~-------~e~~ 152 (207)
+..++--|. ++. .-+.||++++.+-... +.+.+|..+..++++.+--...-. |.+. ..++
T Consensus 376 ~tN~l~av~-eA~--------~d~vPlLvItgd~p~~~~~~ga~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~ 446 (1655)
T PLN02980 376 VSNLLPAVV-EAS--------QDFVPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLD 446 (1655)
T ss_pred HHHHHHHHH-HHh--------hcCCCEEEEeCCCCHHHhcCCCCcccchhhHHHhhhheeecCCCccchhhHHHHHHHHH
Confidence 444454443 333 5689999998764442 445566666778888887665554 4441 3455
Q ss_pred HHHHHHHcC-CCcEEEEEC
Q psy10429 153 GLLKAAIRD-PDPVVFLEN 170 (207)
Q Consensus 153 ~ll~~a~~~-~~P~~i~~~ 170 (207)
.+++.|... ++||+|-.|
T Consensus 447 ~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 447 SAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred HHHHHHhCCCCCCEEEECc
Confidence 666666665 699999776
No 177
>PRK06154 hypothetical protein; Provisional
Probab=89.62 E-value=11 Score=35.64 Aligned_cols=111 Identities=20% Similarity=0.070 Sum_probs=67.7
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG 121 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g 121 (207)
|.+|+..+- +=-..++.|+|.++.- -++++.+..- .|.+.. ..|- -+. +.++|++++.-+ +....
T Consensus 421 p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~~-~EL~-Ta~--------r~~lpi~~vV~NN~~yg~ 490 (565)
T PRK06154 421 PGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTG-MDFE-TAV--------RERIPILTILLNNFSMGG 490 (565)
T ss_pred CCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccH-HHHH-HHH--------HhCCCeEEEEEECCccce
Confidence 578887642 2233566777777763 3667666642 233332 2222 333 679998887654 33211
Q ss_pred C--------C----CCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc---CCCcEEEE
Q psy10429 122 V--------A----AQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR---DPDPVVFL 168 (207)
Q Consensus 122 ~--------~----~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~---~~~P~~i~ 168 (207)
. . ..+..++.++-+.+ |+.-+.=.+++|.+.+++.|++ .++|++|-
T Consensus 491 ~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~g~~V~~~~el~~al~~a~~~~~~~~p~lIe 551 (565)
T PRK06154 491 YDKVMPVSTTKYRATDISGDYAAIARAL-GGYGERVEDPEMLVPALLRALRKVKEGTPALLE 551 (565)
T ss_pred eehhhhhhcCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhccCCCeEEEE
Confidence 1 0 11122345666666 8888888999999999999986 57899883
No 178
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=89.60 E-value=7.2 Score=36.60 Aligned_cols=97 Identities=20% Similarity=0.161 Sum_probs=58.9
Q ss_pred HHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC---------CC----C
Q psy10429 61 AGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG---------VA----A 124 (207)
Q Consensus 61 vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g---------~~----~ 124 (207)
++.|.|+++.. -++++.+..- .|.+ ....|- .++ +.++|++++.-+ |...- .+ .
T Consensus 421 lpaaiGa~la~p~~~vv~i~GDGsf~~-~~~el~-ta~--------~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~~~~~ 490 (557)
T PRK08199 421 LPAAIAAKLLFPERTVVAFAGDGCFLM-NGQELA-TAV--------QYGLPIIVIVVNNGMYGTIRMHQEREYPGRVSGT 490 (557)
T ss_pred HHHHHHHHHhCCCCcEEEEEcchHhhc-cHHHHH-HHH--------HhCCCeEEEEEeCCcchHHHHHHHHhcCCccccc
Confidence 44566766664 3566665532 2222 223332 344 568898887654 43210 01 1
Q ss_pred -CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 125 -QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 125 -hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
.+..++..+.+.+ |+.-..-.+++|....++.+++.++|++|.
T Consensus 491 ~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~li~ 534 (557)
T PRK08199 491 DLTNPDFAALARAY-GGHGETVERTEDFAPAFERALASGKPALIE 534 (557)
T ss_pred cCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1123445666666 777778889999999999999999999885
No 179
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=89.44 E-value=8.6 Score=36.23 Aligned_cols=111 Identities=20% Similarity=0.095 Sum_probs=67.4
Q ss_pred CCceeeccc-h-hHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPI-T-EIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI-a-E~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|+..+- . =-..++.|+|.+++. -++++.+..- .|.+...| |- .+. +.++|++++.-+ ++..
T Consensus 414 ~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i~GDGsf~m~~~e-L~-ta~--------r~~lpi~ivV~NN~~~~~ 483 (571)
T PRK07710 414 PDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAIVGDGGFQMTLQE-LS-VIK--------ELSLPVKVVILNNEALGM 483 (571)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHH-HH-HHH--------HhCCCeEEEEEECchHHH
Confidence 467876532 1 123566777777763 2555555532 23333322 32 344 568888777543 3321
Q ss_pred --------CCCC----C--CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 --------GVAA----Q--HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 --------g~~~----h--hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
.... . ...++..+-+.+ |++-+.-.+.+|...+++++++.++|++|-
T Consensus 484 i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 544 (571)
T PRK07710 484 VRQWQEEFYNQRYSHSLLSCQPDFVKLAEAY-GIKGVRIDDELEAKEQLQHAIELQEPVVID 544 (571)
T ss_pred HHHHHHHHhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0111 0 112445666666 888899999999999999999999999984
No 180
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=89.42 E-value=8.8 Score=36.17 Aligned_cols=146 Identities=17% Similarity=0.203 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCccCCchhhchhh-hhhcCCCceeeccc-h-hHHHHHHHHHHHhcCCccEEEechh-h
Q psy10429 7 LNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGL-WKKYGDKRVLDTPI-T-EIGFAGIAVGAAMAGLRPVCEFMTF-N 82 (207)
Q Consensus 7 ~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l-~~~~g~~r~~~~gI-a-E~~~vg~A~GlA~~G~~pi~~~~~~-~ 82 (207)
+...|.+.+...++.+++. |.+ ........+ .-.. |.++++++- . =-..++.|+|++++--++++.+..- .
T Consensus 378 ~~~~l~~~l~~~~d~iv~~-~~~---~~~~~~~~~~~~~~-p~~~~~~~~~gsmG~glpaaiGa~la~~~~vv~i~GDG~ 452 (569)
T PRK09259 378 ALGAIRDVLKENPDIYLVN-EGA---NTLDLARNIIDMYK-PRHRLDCGTWGVMGIGMGYAIAAAVETGKPVVAIEGDSA 452 (569)
T ss_pred HHHHHHHHhCCCCCEEEEe-Cch---HHHHHHHHhcccCC-CCceEeCCCCccccccHHHHHHHHhcCCCcEEEEecCcc
Confidence 3445555654444665544 321 111111222 2244 467776643 1 1224567777777744666666632 2
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-C------C--C---CC--CchhHhHHHcCCCCcEEEeeCC
Q psy10429 83 FSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS-G------V--A---AQ--HSQCFGAWFTQCPGLKVVSPYN 147 (207)
Q Consensus 83 ~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~-g------~--~---~h--hs~~~~a~~~~iPgl~v~~P~~ 147 (207)
|.+..-| |- -+. +.++|++++.-+ |+.. + . . .. ...++.++.+.+ |.+-+.-.+
T Consensus 453 f~m~~~E-L~-Ta~--------r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~ 521 (569)
T PRK09259 453 FGFSGME-VE-TIC--------RYNLPVTVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAF-GGVGYNVTT 521 (569)
T ss_pred ccccHHH-HH-HHH--------HcCCCEEEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHHHHHHC-CCeEEEECC
Confidence 3333222 32 334 568998887643 4320 0 0 0 11 123445666666 777788899
Q ss_pred HHHHHHHHHHHHcCCCcEEEE
Q psy10429 148 SEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 148 ~~e~~~ll~~a~~~~~P~~i~ 168 (207)
++|.+..++++++.++|++|-
T Consensus 522 ~~el~~al~~a~~~~~p~lIe 542 (569)
T PRK09259 522 PDELRHALTEAIASGKPTLIN 542 (569)
T ss_pred HHHHHHHHHHHHhCCCCEEEE
Confidence 999999999999999999873
No 181
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=89.20 E-value=2.5 Score=39.71 Aligned_cols=99 Identities=19% Similarity=0.265 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC--CCC-----------
Q psy10429 59 GFAGIAVGAAMAGLRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS--GVA----------- 123 (207)
Q Consensus 59 ~~vg~A~GlA~~G~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~--g~~----------- 123 (207)
..++.|.|.+++--++++.+..- .|.+ ....+-+ +. +.++|++++.-+ |+.. +.-
T Consensus 429 ~~lpaaiGaala~~~~vv~i~GDGsf~~-~~~eL~T-a~--------r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~~~ 498 (568)
T PRK07449 429 GLLSTAAGVARASAKPTVALIGDLSFLH-DLNGLLL-LK--------QVPAPLTIVVVNNNGGGIFSLLPQPEEEPVFER 498 (568)
T ss_pred hHHHHHHHHHhcCCCCEEEEechHHhhc-CcHHHHh-hc--------ccCCCeEEEEEECCCCccccCCCCCCCcchhhH
Confidence 45788888888744666666642 2222 2222221 23 678888877653 4321 100
Q ss_pred ---CCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 124 ---AQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 124 ---~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
.-+..++.++-..+ |.+-+...+++|.+..++++++.++|++|-
T Consensus 499 ~~~~~~~~df~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~p~lIe 545 (568)
T PRK07449 499 FFGTPHGVDFAHAAAMY-GLEYHRPETWAELEEALADALPTPGLTVIE 545 (568)
T ss_pred hhcCCCCCCHHHHHHHc-CCCccCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 00112333444444 666677899999999999999999999984
No 182
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=89.15 E-value=4.9 Score=37.94 Aligned_cols=153 Identities=12% Similarity=0.065 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcC--CcEEEEecCCCccCCchhhchhhhhhc--C--CCceeeccchhHHHHHHHHHHHhc-CCccEEEec
Q psy10429 7 LNSALDEEMARD--EKVFLLGEEVALYDGAYKVSRGLWKKY--G--DKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFM 79 (207)
Q Consensus 7 ~~~~L~~~~~~~--~~vv~~~~D~~~~~g~~~~~~~l~~~~--g--~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~ 79 (207)
..+.|.+.+++. +.+|.+-.+ ....+.+.+.+.. | .=|++.+ --|++.+.+|-|+|+. |...++...
T Consensus 9 ~a~~l~~~L~~~GV~~iFgvpG~-----~~~~l~dal~~~~~~g~~~i~~V~~-rhE~~A~~~Adgyar~tgk~gv~~~t 82 (569)
T PRK08327 9 AAELFLELLKELGVDYIFINSGT-----DYPPIIEAKARARAAGRPLPEFVIC-PHEIVAISMAHGYALVTGKPQAVMVH 82 (569)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCC-----CcHHHHHHHHhhhhcCCCCCcEEec-CCHHHHHHHHHHHHHhhCCCeEEEEe
Confidence 356677777665 334444322 1123334554321 1 0256655 4699999999999997 433343333
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCC--C-----CC-CCch---hHhHHHcCCCCcEEEeeCCH
Q psy10429 80 TFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASG--V-----AA-QHSQ---CFGAWFTQCPGLKVVSPYNS 148 (207)
Q Consensus 80 ~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g--~-----~~-hhs~---~~~a~~~~iPgl~v~~P~~~ 148 (207)
..--+..+..-|. ++. ..+.||++++..-.... . .. |..| +..++++.+=. -.....++
T Consensus 83 ~GPG~~N~~~gla-~A~--------~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk-~~~~v~~~ 152 (569)
T PRK08327 83 VDVGTANALGGVH-NAA--------RSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVK-WDYEIRRG 152 (569)
T ss_pred cCHHHHHHHHHHH-HHh--------hcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhh-hhcccCCH
Confidence 2223444554443 222 57899998865322211 1 11 1123 33477776643 23356677
Q ss_pred HHHHHHHHHHHc----C-CCcEEEEECccccc
Q psy10429 149 EDAKGLLKAAIR----D-PDPVVFLENELLYG 175 (207)
Q Consensus 149 ~e~~~ll~~a~~----~-~~P~~i~~~k~l~~ 175 (207)
+++...++.|++ . ++||+|-.|.-+..
T Consensus 153 ~~~~~~l~~A~~~a~~~~~GPV~i~iP~Dv~~ 184 (569)
T PRK08327 153 DQIGEVVARAIQIAMSEPKGPVYLTLPREVLA 184 (569)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEECcHHHHh
Confidence 777777666654 3 78999988865543
No 183
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=88.94 E-value=4.1 Score=38.66 Aligned_cols=110 Identities=16% Similarity=0.111 Sum_probs=66.6
Q ss_pred CCceeeccc-h-hHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC
Q psy10429 47 DKRVLDTPI-T-EIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG 121 (207)
Q Consensus 47 ~~r~~~~gI-a-E~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g 121 (207)
|.+|+..+- . =-..++.|+|++++. -++++.+..- .|.+.+ ..|- -+. +.++|++++.-+ |.. |
T Consensus 408 p~~~~~~~~~gsmG~glpaaiGa~lA~pdr~Vv~i~GDG~f~m~~-~EL~-Ta~--------r~~lpvv~iV~NN~~y-g 476 (588)
T TIGR01504 408 PRHWINCGQAGPLGWTIPAALGVCAADPKRNVVALSGDYDFQFMI-EELA-VGA--------QHNIPYIHVLVNNAYL-G 476 (588)
T ss_pred CCcEEeCCccccccchHhHHHhhhhhCCCCcEEEEEcchHhhccH-HHHH-HHH--------HhCCCeEEEEEeCCch-H
Confidence 577876542 1 223556666666663 3666666632 233332 2222 333 678998887654 332 1
Q ss_pred C----------C----C-C----------CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----CCCcEEEE
Q psy10429 122 V----------A----A-Q----------HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----DPDPVVFL 168 (207)
Q Consensus 122 ~----------~----~-h----------hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~~~P~~i~ 168 (207)
. . . . +..++.++.+.+ |.+-..-.+++|.+.+++.+++ .++|++|-
T Consensus 477 ~i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~~~~p~lIe 551 (588)
T TIGR01504 477 LIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGL-GCKAIRVFKPEEIAPAFEQAKALMAEHRVPVVVE 551 (588)
T ss_pred HHHHHHHHhcccccceeeccccccccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhhcccCCCcEEEE
Confidence 0 0 0 0 023456677777 7777788999999999999995 68999873
No 184
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=88.65 E-value=4.4 Score=37.92 Aligned_cols=111 Identities=11% Similarity=0.055 Sum_probs=67.9
Q ss_pred CCceeeccch--hHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPIT--EIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gIa--E~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|+..+-. =-..++.|+|.+++. -++++.+..- .|.+.. ..|- .+. +.++|++++.-+ ++..
T Consensus 391 ~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~~~~-~eL~-ta~--------~~~l~v~ivV~NN~~~~~ 460 (548)
T PRK08978 391 PENFITSSGLGTMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNV-QELG-TIK--------RKQLPVKIVLLDNQRLGM 460 (548)
T ss_pred CCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEEEccchhhccH-HHHH-HHH--------HhCCCeEEEEEeCCccHH
Confidence 5677764321 122366777777763 4677766632 233322 2222 333 568898887543 3321
Q ss_pred ---------C---CCC--CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 ---------G---VAA--QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 ---------g---~~~--hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
+ .+. .+..++.++.+.+ |.+-....+++|.+..++++++.++|++|-
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 521 (548)
T PRK08978 461 VRQWQQLFFDERYSETDLSDNPDFVMLASAF-GIPGQTITRKDQVEAALDTLLNSEGPYLLH 521 (548)
T ss_pred HHHHHHHHhCCcceecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 011 1223455666666 888888899999999999999999999984
No 185
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=88.49 E-value=12 Score=35.39 Aligned_cols=111 Identities=21% Similarity=0.164 Sum_probs=65.6
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|+..+- +=-..++.|+|.++.. -++++.+..- .|.+.+ ..| ..+. +.++|++++.-+ ++..
T Consensus 420 p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG~f~m~~-~eL-~Tav--------r~~lpvi~vV~NN~~yg~ 489 (579)
T TIGR03457 420 PRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMSM-NEI-MTAV--------RHDIPVTAVVFRNRQWGA 489 (579)
T ss_pred CCeEEcCCccccccchHHHHHhhhhhCCCCcEEEEEcchHHhccH-HHH-HHHH--------HhCCCeEEEEEECcchHH
Confidence 578886432 1122344677777764 3566666532 233332 222 2334 678998877543 4321
Q ss_pred ---------CC---CC-CCc-hhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc---CCCcEEEE
Q psy10429 121 ---------GV---AA-QHS-QCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR---DPDPVVFL 168 (207)
Q Consensus 121 ---------g~---~~-hhs-~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~---~~~P~~i~ 168 (207)
+. +. .+. .++.++.+.+ |.+-+.-.+++|....++.+++ .++|++|-
T Consensus 490 i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~g~~v~~~~el~~al~~a~~~~~~~~p~lie 553 (579)
T TIGR03457 490 EKKNQVDFYNNRFVGTELESELSFAGIADAM-GAKGVVVDKPEDVGPALKKAIAAQAEGKTTVIE 553 (579)
T ss_pred HHHHHHHhhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhCCCCCcEEEE
Confidence 00 00 112 2455666666 7777888999999999999987 57899874
No 186
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=88.39 E-value=9.9 Score=36.21 Aligned_cols=111 Identities=19% Similarity=0.131 Sum_probs=68.4
Q ss_pred CCceeeccc-hhH-HHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPI-TEI-GFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI-aE~-~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|++.+- .-- ..++.|+|.++.. -++++.+..- .|.+. ...|- .+. +.++|++++.-+ |...
T Consensus 437 p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~-~~eL~-Ta~--------~~~lpv~ivV~NN~~~g~ 506 (612)
T PRK07789 437 PRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDGCFQMT-NQELA-TCA--------IEGIPIKVALINNGNLGM 506 (612)
T ss_pred CCeEEcCCCcccccchhhhHHhhhccCCCCcEEEEEcchhhhcc-HHHHH-HHH--------HcCCCeEEEEEECCchHH
Confidence 578887643 333 3578888888874 4667666532 22222 22222 333 568887777543 3321
Q ss_pred ---------CC---C----C-CC-chhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcC-CCcEEEE
Q psy10429 121 ---------GV---A----A-QH-SQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRD-PDPVVFL 168 (207)
Q Consensus 121 ---------g~---~----~-hh-s~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~-~~P~~i~ 168 (207)
+. . . ++ ..++.++-+.+ |++=+.-.+++|+..+++.+++. ++|++|-
T Consensus 507 i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~p~lIe 572 (612)
T PRK07789 507 VRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAY-GCVGLRCEREEDVDAVIEKARAINDRPVVID 572 (612)
T ss_pred HHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 00 0 0 11 13455666666 78778889999999999999995 8999884
No 187
>PRK11269 glyoxylate carboligase; Provisional
Probab=88.06 E-value=11 Score=35.83 Aligned_cols=110 Identities=17% Similarity=0.090 Sum_probs=67.3
Q ss_pred CCceeeccc-h-hHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPI-T-EIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI-a-E~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|++.+- . =-..++.|+|.++.. -++++.+..- .|.+.. ..|- -+. +.++|++++.-+ +...
T Consensus 409 p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~-~eL~-Ta~--------~~~lpv~~vV~NN~~~g~ 478 (591)
T PRK11269 409 PRHWINCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLI-EELA-VGA--------QFNLPYIHVLVNNAYLGL 478 (591)
T ss_pred CCcEEeCCccccccchhhhHHhhhhhCCCCcEEEEEccchhhcCH-HHHH-HHH--------HhCCCeEEEEEeCCchhH
Confidence 578887652 2 223566777777764 4667666642 233332 2222 233 568898887543 4221
Q ss_pred ------C--CC----C-C----------CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----CCCcEEE
Q psy10429 121 ------G--VA----A-Q----------HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----DPDPVVF 167 (207)
Q Consensus 121 ------g--~~----~-h----------hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~~~P~~i 167 (207)
+ .. . . +..++..+-+.+ |.+-..-.+++|++.+++++++ .++|++|
T Consensus 479 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~li 551 (591)
T PRK11269 479 IRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGL-GCKAIRVFKPEDIAPALEQAKALMAEFRVPVVV 551 (591)
T ss_pred HHHHHHHhccCccceeeccccccccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhcccCCCcEEE
Confidence 0 00 0 0 113445666666 8888888999999999999985 7899987
No 188
>PRK12474 hypothetical protein; Provisional
Probab=87.37 E-value=6.8 Score=36.45 Aligned_cols=109 Identities=16% Similarity=0.038 Sum_probs=64.0
Q ss_pred CCceeeccch-hHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCCC
Q psy10429 47 DKRVLDTPIT-EIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASGV 122 (207)
Q Consensus 47 ~~r~~~~gIa-E~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g~ 122 (207)
|.+|+..+-. =-..+..|+|.++.- -++++.+..- .|.+.. ..| .-+. +.++|++++.-+ ++. +.
T Consensus 380 p~~~~~~~~gsmG~glpaAiGa~lA~p~r~vv~i~GDG~f~m~~-qEL-~Ta~--------r~~lpv~iiV~NN~~y-~~ 448 (518)
T PRK12474 380 PHTHLPLTGGSIGQGLPLAAGAAVAAPDRKVVCPQGDGGAAYTM-QAL-WTMA--------RENLDVTVVIFANRSY-AI 448 (518)
T ss_pred CCCEEccCCCccCccHHHHHHHHHHCCCCcEEEEEcCchhcchH-HHH-HHHH--------HHCCCcEEEEEcCCcc-hH
Confidence 5678865321 112455667766662 3555555532 233332 222 2333 568888777543 332 10
Q ss_pred --------C---CC---------Cc--hhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEE
Q psy10429 123 --------A---AQ---------HS--QCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVF 167 (207)
Q Consensus 123 --------~---~h---------hs--~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i 167 (207)
+ .+ +. .++.++.+.+ |..-..-.+++|...+++++++.++|++|
T Consensus 449 i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~rv~~~~eL~~al~~a~~~~~p~li 514 (518)
T PRK12474 449 LNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGL-GVEASRATTAEEFSAQYAAAMAQRGPRLI 514 (518)
T ss_pred HHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 0 00 11 2345566666 77888889999999999999999999987
No 189
>PRK07586 hypothetical protein; Validated
Probab=87.22 E-value=13 Score=34.53 Aligned_cols=110 Identities=20% Similarity=0.105 Sum_probs=62.9
Q ss_pred CCceeeccc-hhHHHHHHHHHHHhc-CCccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeC-CCCCC--
Q psy10429 47 DKRVLDTPI-TEIGFAGIAVGAAMA-GLRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP-NGAAS-- 120 (207)
Q Consensus 47 ~~r~~~~gI-aE~~~vg~A~GlA~~-G~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~-~G~~~-- 120 (207)
|.+|+..+- +=-..+..|+|++++ .-++++.+..- .|.+ ....|- .+. +.++|++++.- +++..
T Consensus 376 ~~~~~~~~~g~mG~~lpaaiGa~lA~p~r~Vv~i~GDGsf~m-~~~EL~-Ta~--------~~~lpv~ivV~NN~~y~~~ 445 (514)
T PRK07586 376 PHDWLTLTGGAIGQGLPLATGAAVACPDRKVLALQGDGSAMY-TIQALW-TQA--------RENLDVTTVIFANRAYAIL 445 (514)
T ss_pred CCCEEccCCcccccHHHHHHHHHHhCCCCeEEEEEechHHHh-HHHHHH-HHH--------HcCCCCEEEEEeCchhHHH
Confidence 577775431 112234556676665 33566655532 2222 233332 233 56889777653 33321
Q ss_pred -------CC-C----------CC-CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEE
Q psy10429 121 -------GV-A----------AQ-HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVF 167 (207)
Q Consensus 121 -------g~-~----------~h-hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i 167 (207)
+. . .. ...++.++-+.+ |.+-..-.+++|...+++++++.++|++|
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~el~~al~~a~~~~~p~li 510 (514)
T PRK07586 446 RGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGM-GVPARRVTTAEEFADALAAALAEPGPHLI 510 (514)
T ss_pred HHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHC-CCcEEEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 00 0 00 112344555555 67777779999999999999999999988
No 190
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=87.11 E-value=8.4 Score=36.36 Aligned_cols=110 Identities=14% Similarity=0.038 Sum_probs=67.5
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|+..+- +=-..++.|+|++++. -++++.+..- .|.+..-| | .-+. +.++|++++.-+ |...
T Consensus 411 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~E-L-~Ta~--------r~~lpv~~vV~NN~~y~~ 480 (572)
T PRK08979 411 PRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQE-L-STAL--------QYDIPVKIINLNNRFLGM 480 (572)
T ss_pred CCeEEccCCcccccchhhHHHhhhhhCCCCeEEEEEcchHhhccHHH-H-HHHH--------HcCCCeEEEEEeCCccHH
Confidence 468886543 3334667777777774 2556655532 33443322 2 2344 678998887654 4321
Q ss_pred ---------CC---CCC--CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcC-CCcEEE
Q psy10429 121 ---------GV---AAQ--HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRD-PDPVVF 167 (207)
Q Consensus 121 ---------g~---~~h--hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~-~~P~~i 167 (207)
++ +.. ...++.++-+.+ |.+-..-.++.|.+.+++.+++. ++|++|
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lI 541 (572)
T PRK08979 481 VKQWQDMIYQGRHSHSYMDSVPDFAKIAEAY-GHVGIRISDPDELESGLEKALAMKDRLVFV 541 (572)
T ss_pred HHHHHHHHhCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 00 000 112345566666 77888899999999999999985 999987
No 191
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=87.06 E-value=1.7 Score=41.48 Aligned_cols=113 Identities=18% Similarity=0.256 Sum_probs=71.8
Q ss_pred CCceeeccchhHHHHHHHHHHHhcCCccEEEec-hhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCC
Q psy10429 47 DKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFM-TFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQ 125 (207)
Q Consensus 47 ~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~-~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~h 125 (207)
|-+-.|+-++=-..+|+|.|++.+.-+.++.+. =..|..-+...|+|.+. ++.+++++.-+-.+.+...|
T Consensus 420 P~~~~d~t~~mGssig~a~g~~~~~~k~~va~iGDsTF~HsGi~~l~nAV~---------n~~~~~~vvLdN~~tAMTGg 490 (640)
T COG4231 420 PLNTVDTTTMMGSSIGIAGGLSFASTKKIVAVIGDSTFFHSGILALINAVY---------NKANILVVVLDNRTTAMTGG 490 (640)
T ss_pred CcchhhhhhhccchhhhccccccccCCceEEEeccccccccCcHHHHHHHh---------cCCCeEEEEEeccchhccCC
Confidence 445555555555668889999966555555555 33566778888886555 56776666443222111111
Q ss_pred C---------------chhHhHHHcCC--CCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 126 H---------------SQCFGAWFTQC--PGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 126 h---------------s~~~~a~~~~i--Pgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
| ....+.+.+.+ --+..+.|-|-.+....++.|++.++|.+|+
T Consensus 491 Qp~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~~gpsVii 550 (640)
T COG4231 491 QPHPGTGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEVPGPSVII 550 (640)
T ss_pred CCCCCcccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcCCCceEEE
Confidence 1 12334444443 5567777999999999999999999998875
No 192
>PRK06154 hypothetical protein; Provisional
Probab=86.97 E-value=11 Score=35.52 Aligned_cols=125 Identities=15% Similarity=0.011 Sum_probs=72.3
Q ss_pred hchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-C-CccEEE--echhhHHHHHHHHHHHHHhhhhhhccCCccCCEEE
Q psy10429 37 VSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-G-LRPVCE--FMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVF 112 (207)
Q Consensus 37 ~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G-~~pi~~--~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi 112 (207)
+.+.+.+ - .=|++. .--|++.+.+|-|+|+. | -+|-+. +..+. +..+..-|. ++. ..+.||++
T Consensus 46 l~dal~~-~-~i~~i~-~rhE~~A~~mAdgyar~t~g~~~gv~~~t~GPG-~~N~~~gla-~A~--------~~~~Pvl~ 112 (565)
T PRK06154 46 LFDAAAA-A-GIRPVI-ARTERVAVHMADGYARATSGERVGVFAVQYGPG-AENAFGGVA-QAY--------GDSVPVLF 112 (565)
T ss_pred HHHHHHh-c-CCeEEe-eCcHHHHHHHHHHHHHhcCCCCCEEEEECCCcc-HHHHHHHHH-HHh--------hcCCCEEE
Confidence 3455643 2 245665 57999999999999985 3 344443 34444 334554443 222 57899998
Q ss_pred EeCCCCCCCCCCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc-----CCCcEEEEECccccc
Q psy10429 113 RGPNGAASGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR-----DPDPVVFLENELLYG 175 (207)
Q Consensus 113 ~~~~G~~~g~~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~-----~~~P~~i~~~k~l~~ 175 (207)
++........+.....+...+++.+=- -.....+++++...++.|++ .++||||-.|..+..
T Consensus 113 i~G~~~~~~~~~~~~~d~~~~~~~vtk-~~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~l~iP~Dv~~ 179 (565)
T PRK06154 113 LPTGYPRGSTDVAPNFESLRNYRHITK-WCEQVTLPDEVPELMRRAFTRLRNGRPGPVVLELPVDVLA 179 (565)
T ss_pred EeCCCCcccccCCCCcchhhhHhhcce-eEEECCCHHHHHHHHHHHHHHHhcCCCceEEEecchHHhh
Confidence 864322211111111122466776644 23455677777766666554 379999988765543
No 193
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.88 E-value=5.4 Score=37.93 Aligned_cols=111 Identities=17% Similarity=0.080 Sum_probs=69.3
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|+..+- +=-..++.|+|++++. -++++.+..- .|.+.+-| | .-+. +.++|++++.-+ |...
T Consensus 420 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~~E-L-~Ta~--------r~~lpvi~vV~NN~~y~~ 489 (595)
T PRK09107 420 PNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQE-M-STAV--------QYNLPVKIFILNNQYMGM 489 (595)
T ss_pred CCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhccHHH-H-HHHH--------HhCCCeEEEEEeCCccHH
Confidence 577886532 1223466777777764 3667766642 23333322 2 2344 678998887643 4331
Q ss_pred ---------CC---CCC--CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 ---------GV---AAQ--HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 ---------g~---~~h--hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
+. +.+ ...++..+-+.+ |.+-+.-.+++|.+.+++.+++.++|++|-
T Consensus 490 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 550 (595)
T PRK09107 490 VRQWQQLLHGNRLSHSYTEAMPDFVKLAEAY-GAVGIRCEKPGDLDDAIQEMIDVDKPVIFD 550 (595)
T ss_pred HHHHHHHHhCCccccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 11 011 113455666777 888888899999999999999999999984
No 194
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=86.59 E-value=7.3 Score=36.91 Aligned_cols=111 Identities=22% Similarity=0.134 Sum_probs=66.7
Q ss_pred CCceeeccc-h-hHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPI-T-EIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI-a-E~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|+..+- . =-..++.|+|.+++- -++++.+..- .|.+.. ..| .-+. +.++|++++.-+ |...
T Consensus 420 ~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i~GDG~f~m~~-~eL-~Ta~--------~~~l~~~~vV~NN~~y~~ 489 (585)
T CHL00099 420 PRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMNL-QEL-GTIA--------QYNLPIKIIIINNKWQGM 489 (585)
T ss_pred CCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEEEcchhhhhhH-HHH-HHHH--------HhCCCeEEEEEECCcchH
Confidence 567875422 2 122456777777763 3555555532 233332 222 2334 568888877653 4321
Q ss_pred ---------CCCCC------CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 ---------GVAAQ------HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 ---------g~~~h------hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
+.... +..++.++.+.+ |++-..-.+++|++.+++.+++.++|++|-
T Consensus 490 i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 551 (585)
T CHL00099 490 VRQWQQAFYGERYSHSNMEEGAPDFVKLAEAY-GIKGLRIKSRKDLKSSLKEALDYDGPVLID 551 (585)
T ss_pred HHHHHHHhcCCCcccccCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 01001 123455677777 888888899999999999999999999884
No 195
>PLN02470 acetolactate synthase
Probab=85.99 E-value=7.2 Score=36.91 Aligned_cols=111 Identities=16% Similarity=0.132 Sum_probs=66.7
Q ss_pred CCceeecc--chhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeC-CCCCC-
Q psy10429 47 DKRVLDTP--ITEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP-NGAAS- 120 (207)
Q Consensus 47 ~~r~~~~g--IaE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~-~G~~~- 120 (207)
|.+|+..+ =+--..++.|+|++++. -++++.+..- .|.+.. ..|- .+. +.++|++++.- +|...
T Consensus 416 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~-~eL~-Ta~--------~~~l~v~ivV~NN~~yg~ 485 (585)
T PLN02470 416 PRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMNI-QELA-TIH--------VENLPVKIMVLNNQHLGM 485 (585)
T ss_pred CCeEEcCCccccccchHHHHHHHHHhCCCCcEEEEEccchhhccH-HHHH-HHH--------HhCCCeEEEEEeCCcchH
Confidence 56777542 11223567777777764 3566666632 233322 2222 333 56888877654 34320
Q ss_pred ---------CC-------CC-----CCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 ---------GV-------AA-----QHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 ---------g~-------~~-----hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
+. +. ++..++.++.+.+ |.+-..-.+++|.+.+++++++.++|++|-
T Consensus 486 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 553 (585)
T PLN02470 486 VVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGC-KIPAARVTRKSDLREAIQKMLDTPGPYLLD 553 (585)
T ss_pred HHHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 00 0113555666666 888888899999999999999999999874
No 196
>PLN02573 pyruvate decarboxylase
Probab=85.79 E-value=4.9 Score=38.07 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCccCCc-hhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhHH
Q psy10429 7 LNSALDEEMARDEKVFLLGEEVALYDGA-YKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNFS 84 (207)
Q Consensus 7 ~~~~L~~~~~~~~~vv~~~~D~~~~~g~-~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~~ 84 (207)
..+.|.+.+++.---.++|- .|+. ..+.+.+.+.- .=+++ ..--|++...+|-|.|+. | ..++...+.--.
T Consensus 18 ~a~~l~~~L~~~Gv~~vFGv----pG~~~~~l~dal~~~~-~i~~i-~~rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~ 90 (578)
T PLN02573 18 LGRHLARRLVEIGVTDVFSV----PGDFNLTLLDHLIAEP-GLNLI-GCCNELNAGYAADGYARARG-VGACVVTFTVGG 90 (578)
T ss_pred HHHHHHHHHHHcCCCEEEEC----CCCchHHHHHHHhhcC-CceEE-EeCCHHHHHHHHHHHHHHhC-CCeEEEecCccH
Confidence 34566666665533333332 1221 13334443211 11333 356799999999999986 7 666554433223
Q ss_pred HHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC--CCC--CCCch------hHhHHHcCCCCcEEEeeCCHHHHHH-
Q psy10429 85 MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS--GVA--AQHSQ------CFGAWFTQCPGLKVVSPYNSEDAKG- 153 (207)
Q Consensus 85 ~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~--g~~--~hhs~------~~~a~~~~iPgl~v~~P~~~~e~~~- 153 (207)
..+..-|.+ +. ..+.||++++..-... +.+ .||.. ...++++.+--. .....+++++..
T Consensus 91 ~n~~~gla~-A~--------~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~-s~~v~~~~~~~~~ 160 (578)
T PLN02573 91 LSVLNAIAG-AY--------SENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCY-QAVINNLEDAHEL 160 (578)
T ss_pred HHHHHHHHH-HH--------HhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEE-EEEeCCHHHHHHH
Confidence 345554442 22 4689999887532221 222 24431 113566554332 223345555554
Q ss_pred ---HHHHHHcCCCcEEEEECccccc
Q psy10429 154 ---LLKAAIRDPDPVVFLENELLYG 175 (207)
Q Consensus 154 ---ll~~a~~~~~P~~i~~~k~l~~ 175 (207)
+++.|...++||||-.|.-+..
T Consensus 161 l~~A~~~A~~~~gPV~l~iP~Dv~~ 185 (578)
T PLN02573 161 IDTAISTALKESKPVYISVSCNLAA 185 (578)
T ss_pred HHHHHHHHHhcCCCEEEEeehhhhc
Confidence 4555555679999988866543
No 197
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=85.35 E-value=8.1 Score=36.67 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcC------CccEEEechhhHHH--HHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCC------
Q psy10429 60 FAGIAVGAAMAG------LRPVCEFMTFNFSM--QAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQ------ 125 (207)
Q Consensus 60 ~vg~A~GlA~~G------~~pi~~~~~~~~~~--ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~h------ 125 (207)
-+++|.|+|++- .++++.+..-.-++ ..+|.+. .++ ..+.|++++.-+....-.+..
T Consensus 122 gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~-~A~--------~~~~nli~IvdnN~~~i~~~~~~~~~~ 192 (580)
T PRK05444 122 SISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALN-NAG--------DLKSDLIVILNDNEMSISPNVGALSNY 192 (580)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHH-HHH--------hhCCCEEEEEECCCCcCCCcchhhhhh
Confidence 456777777642 24566555422121 4455543 455 446888877765443211111
Q ss_pred Cch-hHhHHHcCCCCcEEEee---CCHHHHHHHHHHHHcCCCcEEEEE
Q psy10429 126 HSQ-CFGAWFTQCPGLKVVSP---YNSEDAKGLLKAAIRDPDPVVFLE 169 (207)
Q Consensus 126 hs~-~~~a~~~~iPgl~v~~P---~~~~e~~~ll~~a~~~~~P~~i~~ 169 (207)
... .....++.+ |+.++.+ .|.++....++.+.+.++|++|.-
T Consensus 193 ~~~~~~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~ 239 (580)
T PRK05444 193 LARLRSSTLFEEL-GFNYIGPIDGHDLDALIETLKNAKDLKGPVLLHV 239 (580)
T ss_pred hccccHHHHHHHc-CCCeeeeeCCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 111 122455655 7877755 788888888888888889998853
No 198
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=85.26 E-value=6.9 Score=36.97 Aligned_cols=111 Identities=23% Similarity=0.137 Sum_probs=65.2
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcCC-ccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAGL-RPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG 121 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G~-~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g 121 (207)
|.+|+..+- +=-..++.|+|++++.. ++++.+..- .|.+...| |- .+. +.++|++++..+ |....
T Consensus 412 p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~e-l~-Ta~--------~~~lpi~~vV~NN~~~~~ 481 (570)
T PRK06725 412 PRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDASFQMNIQE-LQ-TIA--------ENNIPVKVFIINNKFLGM 481 (570)
T ss_pred CCeEEccCCcccccchhhHHHhhHhhcCCCeEEEEEecchhhccHHH-HH-HHH--------HhCCCeEEEEEECCccHH
Confidence 467775421 12235666777777642 566666532 23344332 32 334 578998887654 43211
Q ss_pred C--------C-----CC-CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 122 V--------A-----AQ-HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 122 ~--------~-----~h-hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
. + .. ...++.++.+.+ |.+-..-.+++|+..+++.+++.++|++|-
T Consensus 482 ~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~p~lie 541 (570)
T PRK06725 482 VRQWQEMFYENRLSESKIGSPDFVKVAEAY-GVKGLRATNSTEAKQVMLEAFAHEGPVVVD 541 (570)
T ss_pred HHHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0 01 112344566655 665566689999999999999999999874
No 199
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=84.80 E-value=5.2 Score=37.72 Aligned_cols=113 Identities=18% Similarity=0.045 Sum_probs=65.8
Q ss_pred CCceeecc--chhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTP--ITEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~g--IaE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|+..+ =+=-..++.|.|+++.. -++++.+..- .|.+-..|+....+. +.++|++++.-+ |...
T Consensus 420 ~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~e~~l~ta~--------~~~l~~~ivv~NN~~yg~ 491 (569)
T PRK08327 420 PGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSFIFGVPEAAHWVAE--------RYGLPVLVVVFNNGGWLA 491 (569)
T ss_pred CCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEEEecCcceeecCcHHHHHHHH--------HhCCCEEEEEEeCccccc
Confidence 46777664 24455667777777764 3666666532 223333444344455 568898887654 3221
Q ss_pred ---------CCC------CC------CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcC----CCcEEEE
Q psy10429 121 ---------GVA------AQ------HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRD----PDPVVFL 168 (207)
Q Consensus 121 ---------g~~------~h------hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~----~~P~~i~ 168 (207)
+.+ .. ...++.++...+ |...+.-.+++|.+..++.+++. ++|++|-
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~gp~lie 563 (569)
T PRK08327 492 VKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAF-GGYGERVEDPEELKGALRRALAAVRKGRRSAVLD 563 (569)
T ss_pred chhHHhhhCcccccccccccccccCCCCCCHHHHHHhC-CCCceEeCCHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 000 00 112334555554 44555557999999999999876 7899884
No 200
>PRK08611 pyruvate oxidase; Provisional
Probab=84.69 E-value=12 Score=35.46 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=65.0
Q ss_pred CCceeecc-chhH-HHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeC-CCCCC-
Q psy10429 47 DKRVLDTP-ITEI-GFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP-NGAAS- 120 (207)
Q Consensus 47 ~~r~~~~g-IaE~-~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~-~G~~~- 120 (207)
|.+|+..+ ..-- .-++.|+|.++.- -++++.+..- .|.+- ...|- .+. +.++|++++.- +|...
T Consensus 398 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDGsf~m~-~~eL~-Ta~--------r~~l~~iivV~NN~~~g~ 467 (576)
T PRK08611 398 NQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMV-MQDFV-TAV--------KYKLPIVVVVLNNQQLAF 467 (576)
T ss_pred CCeEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcccHHhhh-HHHHH-HHH--------HhCCCeEEEEEeCCcchH
Confidence 56666432 2211 2355566666653 3666666632 23333 33332 344 67889777654 33321
Q ss_pred ------C-CCCC-----CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 ------G-VAAQ-----HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 ------g-~~~h-----hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
. .... +..++.++-+.+ |.+-+...+++|.+..++++++.++|++|-
T Consensus 468 i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 526 (576)
T PRK08611 468 IKYEQQAAGELEYAIDLSDMDYAKFAEAC-GGKGYRVEKAEELDPAFEEALAQDKPVIID 526 (576)
T ss_pred HHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 1111 123445555655 777888899999999999999999999984
No 201
>PRK05899 transketolase; Reviewed
Probab=84.37 E-value=8.2 Score=36.95 Aligned_cols=64 Identities=9% Similarity=0.151 Sum_probs=43.0
Q ss_pred CccCC-EEEEeCCCCC-CCC--CCCCchhHhHHHcCCCCcEEEeeC--CHHHHHHHHHHHHcCCCcEEEEE
Q psy10429 105 TVNVP-IVFRGPNGAA-SGV--AAQHSQCFGAWFTQCPGLKVVSPY--NSEDAKGLLKAAIRDPDPVVFLE 169 (207)
Q Consensus 105 ~~~~p-vvi~~~~G~~-~g~--~~hhs~~~~a~~~~iPgl~v~~P~--~~~e~~~ll~~a~~~~~P~~i~~ 169 (207)
..++| ++++.-+... ... ......+....++.+ |++++.-. |..+...+++.+.+.++|++|.-
T Consensus 176 ~~~L~~li~v~dnN~~~~~~~~~~~~~~~~~~~~~a~-G~~~~~VdG~d~~~l~~al~~a~~~~~P~vI~v 245 (624)
T PRK05899 176 HLKLGNLIVIYDDNRISIDGPTEGWFTEDVKKRFEAY-GWHVIEVDGHDVEAIDAAIEEAKASTKPTLIIA 245 (624)
T ss_pred HhCCCCEEEEEECCCCcccccccccccccHHHHhccC-CCeEEEECCCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 46776 5555544332 211 112223455777777 89888877 89999999999998889998753
No 202
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=83.46 E-value=26 Score=33.15 Aligned_cols=111 Identities=18% Similarity=0.128 Sum_probs=64.7
Q ss_pred CCceeeccc-h-hHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeC-CCCCC-
Q psy10429 47 DKRVLDTPI-T-EIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGP-NGAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI-a-E~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~-~G~~~- 120 (207)
|.+++..+- . =-..++.|.|+++.. -+|++.+..- .|.+- ...|. .+. +.++|++++.- ++...
T Consensus 425 p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i~GDG~f~~~-~~el~-Ta~--------~~~lpv~ivV~NN~~y~~ 494 (588)
T PRK07525 425 GRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWGIS-MNEVM-TAV--------RHNWPVTAVVFRNYQWGA 494 (588)
T ss_pred CCeEEccccccccccHHHHHHHHHHhCCCCcEEEEEcCchHhcc-HHHHH-HHH--------HhCCCeEEEEEeCchhHH
Confidence 567775432 2 122456777777764 3677666632 23333 33333 344 57899887764 33321
Q ss_pred ---------CC---CCCC--chhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcC---CCcEEEE
Q psy10429 121 ---------GV---AAQH--SQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRD---PDPVVFL 168 (207)
Q Consensus 121 ---------g~---~~hh--s~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~---~~P~~i~ 168 (207)
+. +... ..++.++.+.+ |.+-+.-.+++|.+..++.+++. ++|++|-
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lIe 558 (588)
T PRK07525 495 EKKNQVDFYNNRFVGTELDNNVSYAGIAEAM-GAEGVVVDTQEELGPALKRAIDAQNEGKTTVIE 558 (588)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 10 1111 12444555555 66666678999999999999975 5899873
No 203
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=83.29 E-value=40 Score=31.53 Aligned_cols=109 Identities=15% Similarity=0.047 Sum_probs=61.8
Q ss_pred CCceeeccchhHHHH----HHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCC
Q psy10429 47 DKRVLDTPITEIGFA----GIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAA 119 (207)
Q Consensus 47 ~~r~~~~gIaE~~~v----g~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~ 119 (207)
+.+++..+ -.+.+ ..|+|++++. -++++.+..- .|.+. ...|- .+. +.++|++++.-+ +..
T Consensus 394 ~~~~~~~~--~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~-~~EL~-Ta~--------~~~lpi~~vV~NN~~y 461 (539)
T TIGR03393 394 DVNFIVQP--LWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQLT-IQELG-SML--------RDKQHPIILVLNNEGY 461 (539)
T ss_pred CCeEEech--hhhhhhhHHHHHHHHHhcCCCCCeEEEEcCcHHHhH-HHHHH-HHH--------HcCCCCEEEEEeCCce
Confidence 35676554 23433 4455655653 3566666642 23332 33332 344 678888877654 332
Q ss_pred C------CCCCCC----chhHhHHHcCCCCc----EEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 120 S------GVAAQH----SQCFGAWFTQCPGL----KVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 120 ~------g~~~hh----s~~~~a~~~~iPgl----~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
. +....+ ..++.++-+.+ |. +-+.-.+.+|.+..++.+++.++|++|-
T Consensus 462 ~~i~~~~~~~~~~~~~~~~df~~la~a~-G~~~~~~~~~v~~~~el~~al~~a~~~~~p~lie 523 (539)
T TIGR03393 462 TVERAIHGAEQRYNDIALWNWTHLPQAL-SLDPQSECWRVSEAEQLADVLEKVAAHERLSLIE 523 (539)
T ss_pred EEEEeecCCCCCcCcCCCCCHHHHHHHc-CCCCccceEEeccHHHHHHHHHHHhccCCeEEEE
Confidence 1 111111 12333444444 43 4677799999999999999999999984
No 204
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=83.06 E-value=24 Score=33.26 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=65.7
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|+..+- +=-..++.|+|+++.. -++++.+..- .|.+.. ..| .-+. +.++|++++.-+ |...
T Consensus 411 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~-~eL-~Ta~--------r~~l~v~ivV~NN~~yg~ 480 (574)
T PRK07979 411 PRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNI-QEL-STAL--------QYELPVLVLNLNNRYLGM 480 (574)
T ss_pred CCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEEEcchhhhccH-HHH-HHHH--------HhCCCeEEEEEeCchhhH
Confidence 477886641 1223556777777763 2555555532 334333 222 2344 679998887654 3221
Q ss_pred --------CCCC----C--CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcC---CCcEEEE
Q psy10429 121 --------GVAA----Q--HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRD---PDPVVFL 168 (207)
Q Consensus 121 --------g~~~----h--hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~---~~P~~i~ 168 (207)
..+. . ...++.++-+.+ |.+=..-.+++|...+++.+++. ++|++|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~g~~v~~~~eL~~al~~a~~~~~~~~p~lIe 544 (574)
T PRK07979 481 VKQWQDMIYSGRHSQSYMQSLPDFVRLAEAY-GHVGIQISHPDELESKLSEALEQVRNNRLVFVD 544 (574)
T ss_pred HHHHHHHhcCCccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhccCCCCcEEEE
Confidence 0111 1 112345566666 67777789999999999999985 8999883
No 205
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=82.82 E-value=7.7 Score=36.99 Aligned_cols=110 Identities=17% Similarity=0.085 Sum_probs=65.1
Q ss_pred CCceeeccc-hh-HHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC
Q psy10429 47 DKRVLDTPI-TE-IGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG 121 (207)
Q Consensus 47 ~~r~~~~gI-aE-~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g 121 (207)
|.+|+..+- .- -..+..|+|.+++- -++++.+..- .|.+.. .-|- -+. +.++|++++.-+ +.. +
T Consensus 424 p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m~~-~eL~-Ta~--------r~~lpvi~vV~NN~~~-g 492 (616)
T PRK07418 424 PRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDASFLMNI-QELG-TLA--------QYGINVKTVIINNGWQ-G 492 (616)
T ss_pred CCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEEEcchHhhhhH-HHHH-HHH--------HhCCCeEEEEEECCcc-h
Confidence 567775421 11 12345566666653 3666766632 233332 2232 333 568998887654 332 1
Q ss_pred C--------------CCC---CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 122 V--------------AAQ---HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 122 ~--------------~~h---hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
. +.. +..++..+-..+ |++=+.-.+++|.+..++.|++.++|++|-
T Consensus 493 ~i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~g~~V~~~~el~~al~~a~~~~~p~lIe 555 (616)
T PRK07418 493 MVRQWQESFYGERYSASNMEPGMPDFVKLAEAF-GVKGMVISERDQLKDAIAEALAHDGPVLID 555 (616)
T ss_pred HHHHHHHHhcCCCceeecCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 000 112344566666 788888899999999999999999999873
No 206
>KOG0225|consensus
Probab=82.35 E-value=7.5 Score=34.61 Aligned_cols=110 Identities=21% Similarity=0.217 Sum_probs=61.0
Q ss_pred chhHHHHHHHHHHHhc--CCccEEEechhhHH---HHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCc--
Q psy10429 55 ITEIGFAGIAVGAAMA--GLRPVCEFMTFNFS---MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHS-- 127 (207)
Q Consensus 55 IaE~~~vg~A~GlA~~--G~~pi~~~~~~~~~---~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs-- 127 (207)
+-+|-=+|.++++|.. +-.-++..++.+-. ...||.+ |.++ ++++|+|++..+... |.|+++.
T Consensus 167 VGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~-NMA~--------LW~LP~IFvCENN~y-GMGTs~~Ra 236 (394)
T KOG0225|consen 167 VGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAF-NMAA--------LWKLPVIFVCENNHY-GMGTSAERA 236 (394)
T ss_pred eccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHh-hHHH--------HhCCCEEEEEccCCC-ccCcchhhh
Confidence 4455556666666663 44556655554433 1234432 3444 789999999986332 3333332
Q ss_pred -hhHhHHHc--CCCCcEEEeeCCH----HHHHHHHHHHHcCCCcEEEEECccccc
Q psy10429 128 -QCFGAWFT--QCPGLKVVSPYNS----EDAKGLLKAAIRDPDPVVFLENELLYG 175 (207)
Q Consensus 128 -~~~~a~~~--~iPgl~v~~P~~~----~e~~~ll~~a~~~~~P~~i~~~k~l~~ 175 (207)
-+.+=+.| -|||++| -=.|. +-++.+.++|.+.++|.++-....+|+
T Consensus 237 sa~teyykRG~yiPGl~V-dGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~ 290 (394)
T KOG0225|consen 237 SASTEYYKRGDYIPGLKV-DGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYH 290 (394)
T ss_pred hcChHHHhccCCCCceEE-CCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeec
Confidence 22232333 3898876 22232 233445556666799999876655553
No 207
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=81.19 E-value=16 Score=34.55 Aligned_cols=111 Identities=20% Similarity=0.149 Sum_probs=65.7
Q ss_pred CCceeeccch-h-HHHHHHHHHHHhcCC-ccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPIT-E-IGFAGIAVGAAMAGL-RPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gIa-E-~~~vg~A~GlA~~G~-~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|+.++-- - -.-+..|+|+++.-. ++++.+..- .|.+. ...|- .+. +.++|++++.-+ |...
T Consensus 398 p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i~GDG~F~m~-~qEL~-Ta~--------r~~lpv~ivv~nN~~~g~ 467 (550)
T COG0028 398 PRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMN-GQELE-TAV--------RYGLPVKIVVLNNGGYGM 467 (550)
T ss_pred CCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEEEcccHHhcc-HHHHH-HHH--------HhCCCEEEEEEECCcccc
Confidence 5677776322 1 112445555555543 677776642 33443 22222 333 567898887653 4331
Q ss_pred --------CC----CCCCchh-HhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 --------GV----AAQHSQC-FGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 --------g~----~~hhs~~-~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
+. +.+.... +..+-..+ |.+-+.-.+++|.+..++.|++.++|++|-
T Consensus 468 v~~~q~~~~~~~~~~~~~~~~~f~klAea~-G~~g~~v~~~~el~~al~~al~~~~p~lid 527 (550)
T COG0028 468 VRQWQELFYGGRYSGTDLGNPDFVKLAEAY-GAKGIRVETPEELEEALEEALASDGPVLID 527 (550)
T ss_pred chHHHHHhcCCCcceeecCCccHHHHHHHc-CCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 01 1122222 44444544 888888899999999999999999998873
No 208
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=80.13 E-value=22 Score=33.90 Aligned_cols=110 Identities=16% Similarity=0.120 Sum_probs=62.2
Q ss_pred eeeccchhHHHHHHHHHHHhc----CC-ccEEEechh-hHH-HHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCC
Q psy10429 50 VLDTPITEIGFAGIAVGAAMA----GL-RPVCEFMTF-NFS-MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASG 121 (207)
Q Consensus 50 ~~~~gIaE~~~vg~A~GlA~~----G~-~pi~~~~~~-~~~-~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g 121 (207)
++.+|+.= +-+++|.|+|++ |. ..++....- .+. -.++|.+. .++ .++.|++++..+ +.+.+
T Consensus 109 ~~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln-~A~--------~~k~~li~Ii~dN~~si~ 178 (581)
T PRK12315 109 FFTVGHTS-TSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLN-NAA--------ELKSNLIIIVNDNQMSIA 178 (581)
T ss_pred CcCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHH-HHH--------hhCCCEEEEEECCCCcCC
Confidence 45667644 567888888775 32 233333321 122 25677764 666 457899998765 33322
Q ss_pred CC---CCC---------chhHhHHHcCCCCcEEEee---CCHHHHHHHHHHHHcCCCcEEEEEC
Q psy10429 122 VA---AQH---------SQCFGAWFTQCPGLKVVSP---YNSEDAKGLLKAAIRDPDPVVFLEN 170 (207)
Q Consensus 122 ~~---~hh---------s~~~~a~~~~iPgl~v~~P---~~~~e~~~ll~~a~~~~~P~~i~~~ 170 (207)
.. ..+ ..+....+..+ |+..+.| .|..+...+++.+.+.++|++|.-.
T Consensus 179 ~~~~~~~~~l~~~~~~~~~~~~~~~~a~-G~~~~~v~DG~D~~~l~~a~~~a~~~~gP~~i~~~ 241 (581)
T PRK12315 179 ENHGGLYKNLKELRDTNGQSENNLFKAM-GLDYRYVEDGNDIESLIEAFKEVKDIDHPIVLHIH 241 (581)
T ss_pred CCCchhhhhhhhhhhcccccHHHHHHhc-CCeEEEeeCCCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 11 111 11123566766 6766665 4555666666666666899998543
No 209
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=79.74 E-value=14 Score=32.76 Aligned_cols=65 Identities=14% Similarity=0.116 Sum_probs=34.5
Q ss_pred CccCCEEEEeCCCCCCCCCCC---C-chhHhHHHcCCCCcEEEeeCCHHH------HHHHHHHHHcCCCcEEEEEC
Q psy10429 105 TVNVPIVFRGPNGAASGVAAQ---H-SQCFGAWFTQCPGLKVVSPYNSED------AKGLLKAAIRDPDPVVFLEN 170 (207)
Q Consensus 105 ~~~~pvvi~~~~G~~~g~~~h---h-s~~~~a~~~~iPgl~v~~P~~~~e------~~~ll~~a~~~~~P~~i~~~ 170 (207)
..++|++++..+.......+. . ..++....+.+ |+..+.-...++ ++.+++.+.+.++|++|-..
T Consensus 170 ~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~ 244 (341)
T TIGR03181 170 VFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAY-GIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAV 244 (341)
T ss_pred ccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhC-CCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 679999998775332111111 1 12233333332 444333333333 36677777778999998543
No 210
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=78.73 E-value=35 Score=32.17 Aligned_cols=110 Identities=19% Similarity=0.133 Sum_probs=64.7
Q ss_pred CCceeeccc--hhHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCC-
Q psy10429 47 DKRVLDTPI--TEIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAAS- 120 (207)
Q Consensus 47 ~~r~~~~gI--aE~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~- 120 (207)
|.+|+..+- +--..++.|+|.+++. -++++.+..- .|.+..-| | .-+. +.++|++++.-+ |+..
T Consensus 408 ~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i~GDG~f~m~~~e-L-~Ta~--------~~~l~i~~vV~NN~~y~~ 477 (566)
T PRK07282 408 ERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTNQE-L-AILN--------IYKVPIKVVMLNNHSLGM 477 (566)
T ss_pred CCcEecCCccccccchhhHhheeheecCCCcEEEEEcchhhhccHHH-H-HHHH--------HhCCCeEEEEEeCCCchH
Confidence 567886532 2233556667777764 2566665532 23333322 2 2333 568888877543 4321
Q ss_pred ---------CC-CCC----CchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 121 ---------GV-AAQ----HSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 121 ---------g~-~~h----hs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
++ ... ...++.++-+.+ |.+-..-.+++|...+++ +++.++|++|-
T Consensus 478 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~-~~~~~~p~lIe 537 (566)
T PRK07282 478 VRQWQESFYEGRTSESVFDTLPDFQLMAQAY-GIKHYKFDNPETLAQDLE-VITEDVPMLIE 537 (566)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHH-HhcCCCCEEEE
Confidence 00 000 122345666666 888888899999999997 46779999984
No 211
>PLN02790 transketolase
Probab=78.01 E-value=19 Score=34.85 Aligned_cols=75 Identities=7% Similarity=0.053 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhhhhhccCCccCC-EEEEeCC-CCCCCCC--CCCchhHhHHHcCCCCcEEEee----CCHHHHHHHHHH
Q psy10429 86 QAIDHIINSAAKTFYMSAGTVNVP-IVFRGPN-GAASGVA--AQHSQCFGAWFTQCPGLKVVSP----YNSEDAKGLLKA 157 (207)
Q Consensus 86 ra~dqi~~~~a~~~~~~~~~~~~p-vvi~~~~-G~~~g~~--~hhs~~~~a~~~~iPgl~v~~P----~~~~e~~~ll~~ 157 (207)
.++|.+. .++ .+++| ++++.-+ +....+. .....+....++.+ |++++.+ .|.++...+++.
T Consensus 153 ~~~EAl~-~A~--------~~~L~nli~i~d~N~~~i~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l~~a~~~ 222 (654)
T PLN02790 153 ISNEAAS-LAG--------HWGLGKLIVLYDDNHISIDGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEIRAAIKE 222 (654)
T ss_pred HHHHHHH-HHH--------HhCCCCEEEEEecCCccccCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHHHHHHHH
Confidence 5566653 566 56876 6655543 4433221 12233445678888 9999999 467777788888
Q ss_pred HHc-CCCcEEEEEC
Q psy10429 158 AIR-DPDPVVFLEN 170 (207)
Q Consensus 158 a~~-~~~P~~i~~~ 170 (207)
+.+ .++|++|.-.
T Consensus 223 a~~~~~~P~lI~~~ 236 (654)
T PLN02790 223 AKAVTDKPTLIKVT 236 (654)
T ss_pred HHhcCCCeEEEEEE
Confidence 876 6899998543
No 212
>PLN02573 pyruvate decarboxylase
Probab=74.98 E-value=31 Score=32.70 Aligned_cols=110 Identities=11% Similarity=-0.028 Sum_probs=63.8
Q ss_pred Cceeeccc-h-hHHHHHHHHHHHhcC-CccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCCC
Q psy10429 48 KRVLDTPI-T-EIGFAGIAVGAAMAG-LRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASGV 122 (207)
Q Consensus 48 ~r~~~~gI-a-E~~~vg~A~GlA~~G-~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g~ 122 (207)
.+|+..+- . =-..+..|+|+++.- -++++.+..- .|.+.. ..|- -+. +.++|++++.-+ |.. +.
T Consensus 419 ~~~~~~~~~gsmG~glpaaiGa~lA~p~r~vv~i~GDG~f~m~~-~EL~-Ta~--------r~~lpvv~vV~NN~~y-g~ 487 (578)
T PLN02573 419 CGYEFQMQYGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTA-QDVS-TMI--------RCGQKSIIFLINNGGY-TI 487 (578)
T ss_pred CeEEeecchhhhhhhhhHHHHHHHhCCCCceEEEEeccHHHhHH-HHHH-HHH--------HcCCCCEEEEEeCCce-eE
Confidence 45655442 1 122445666666652 3555555532 334433 2232 344 679998887654 432 21
Q ss_pred ---------CCCCchhHhHHHcCCC---C-cEEEeeCCHHHHHHHHHHHHc--CCCcEEEE
Q psy10429 123 ---------AAQHSQCFGAWFTQCP---G-LKVVSPYNSEDAKGLLKAAIR--DPDPVVFL 168 (207)
Q Consensus 123 ---------~~hhs~~~~a~~~~iP---g-l~v~~P~~~~e~~~ll~~a~~--~~~P~~i~ 168 (207)
+..+..++.++.+.+- | ..-..-.+++|++.+++.|+. .++|++|-
T Consensus 488 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p~lie 548 (578)
T PLN02573 488 EVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKDCLCFIE 548 (578)
T ss_pred EEeecccCccccCCCCHHHHHHHhcCcCCceeEEEecCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 1112234456666662 3 778888999999999999984 69999884
No 213
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=73.97 E-value=23 Score=31.42 Aligned_cols=65 Identities=22% Similarity=0.188 Sum_probs=36.4
Q ss_pred CccCCEEEEeCC-CCCCCCCC--C-CchhHh--HHHcCCCCcEEEeeCCHHHH----HHHHHHHHcCCCcEEEEEC
Q psy10429 105 TVNVPIVFRGPN-GAASGVAA--Q-HSQCFG--AWFTQCPGLKVVSPYNSEDA----KGLLKAAIRDPDPVVFLEN 170 (207)
Q Consensus 105 ~~~~pvvi~~~~-G~~~g~~~--h-hs~~~~--a~~~~iPgl~v~~P~~~~e~----~~ll~~a~~~~~P~~i~~~ 170 (207)
..++|++++..+ +...+... . ...+.. +---.+|+++|=- .|..+. +.+++.+.+.++|++|-..
T Consensus 183 ~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg-~d~~av~~a~~~A~~~ar~~~gP~lIev~ 257 (341)
T CHL00149 183 LWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDG-MDVLAVREVAKEAVERARQGDGPTLIEAL 257 (341)
T ss_pred hcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeC-CCHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 679999998765 43333211 1 111222 2333677777644 344433 4556666667899998554
No 214
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=73.53 E-value=21 Score=31.00 Aligned_cols=107 Identities=22% Similarity=0.201 Sum_probs=60.7
Q ss_pred eccchhHHHHHHHHHHHh----cCCccEEEechhhHH---HHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCCC-
Q psy10429 52 DTPITEIGFAGIAVGAAM----AGLRPVCEFMTFNFS---MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASGV- 122 (207)
Q Consensus 52 ~~gIaE~~~vg~A~GlA~----~G~~pi~~~~~~~~~---~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g~- 122 (207)
+.++..+ +.+|+|.|+ .|...++..++.+-. ..-+|.+ |.++ .+++|||++..+ +...+.
T Consensus 100 ~~~vg~~--~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~Eal-N~A~--------~~~lPvifvveNN~~aist~ 168 (300)
T PF00676_consen 100 SSPVGAQ--VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEAL-NLAA--------LWKLPVIFVVENNQYAISTP 168 (300)
T ss_dssp ESSTTTH--HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHH-HHHH--------HTTTSEEEEEEEESEETTEE
T ss_pred ccccccc--CccccchhHhhhhcCCceeEEEEecCcccccCccHHHH-HHHh--------hccCCeEEEEecCCcccccC
Confidence 4445555 444445555 466666666654433 2334443 4555 679999999875 433221
Q ss_pred ----CCCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc----CCCcEEEEEC
Q psy10429 123 ----AAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR----DPDPVVFLEN 170 (207)
Q Consensus 123 ----~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~----~~~P~~i~~~ 170 (207)
.......+.+..-.+|++.| -=.|+.++...++.|++ .++|++|-..
T Consensus 169 ~~~~~~~~~~~~~a~~~gip~~~V-DG~D~~av~~a~~~A~~~~R~g~gP~lie~~ 223 (300)
T PF00676_consen 169 TEEQTASPDIADRAKGYGIPGIRV-DGNDVEAVYEAAKEAVEYARAGKGPVLIEAV 223 (300)
T ss_dssp HHHHCSSSTSGGGGGGTTSEEEEE-ETTSHHHHHHHHHHHHHHHHTTT--EEEEEE
T ss_pred ccccccccchhhhhhccCCcEEEE-CCEeHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 11111233344446777765 56888888887777765 4899998544
No 215
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=71.73 E-value=7.1 Score=29.18 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=28.3
Q ss_pred EEEeeCCHHHHHHHHHHHHcCCCcEEEEECc
Q psy10429 141 KVVSPYNSEDAKGLLKAAIRDPDPVVFLENE 171 (207)
Q Consensus 141 ~v~~P~~~~e~~~ll~~a~~~~~P~~i~~~k 171 (207)
-|+.|.+.+|.+.++++|.+.+-|+.++-.-
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G 33 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANENGVPVRVRGGG 33 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTSEEEEESSS
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcEEEEcCC
Confidence 4899999999999999999999999998653
No 216
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=71.24 E-value=30 Score=37.22 Aligned_cols=97 Identities=12% Similarity=0.061 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCccEEEechh-hHHHHHHHHHHHHHhhhhhhccCC--ccCCEEEEeC-CCCC--CCCC-----------
Q psy10429 61 AGIAVGAAMAGLRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGT--VNVPIVFRGP-NGAA--SGVA----------- 123 (207)
Q Consensus 61 vg~A~GlA~~G~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~--~~~pvvi~~~-~G~~--~g~~----------- 123 (207)
++.|+|.++.--+|++.+..- .|.+- . +++..+. + .++|++++.- +++. ....
T Consensus 767 lpaAIGaala~~r~Vv~i~GDGsF~m~-~----~EL~Ta~-----r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~ 836 (1655)
T PLN02980 767 LSTAIGFAVGCNKRVLCVVGDISFLHD-T----NGLSILS-----QRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVL 836 (1655)
T ss_pred HHHHHHHhhcCCCCEEEEEehHHHHhh-h----hHHHHhh-----cccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhH
Confidence 777788777645677666642 12222 2 2333210 2 3789877754 3332 1110
Q ss_pred -----CCCchhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEE
Q psy10429 124 -----AQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 124 -----~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~ 168 (207)
..|..++..+.+.+ |++-....+++|...+++++.+.++|++|-
T Consensus 837 ~~~~~~~~~~df~~lA~a~-G~~~~rV~~~~eL~~aL~~a~~~~~p~lIE 885 (1655)
T PLN02980 837 NQYFYTSHDISIENLCLAH-GVRHLHVGTKSELEDALFTSQVEQMDCVVE 885 (1655)
T ss_pred HHHhcCCCCCCHHHHHHHc-CCceeecCCHHHHHHHHHHhhccCCCEEEE
Confidence 01223344455544 788888899999999999999999999983
No 217
>PTZ00089 transketolase; Provisional
Probab=68.10 E-value=70 Score=31.01 Aligned_cols=75 Identities=7% Similarity=0.120 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhhhhhccCCccCC-EEEEeCC-CCCCCCCC--CCchhHhHHHcCCCCcEEEeeC----CHHHHHHHHHH
Q psy10429 86 QAIDHIINSAAKTFYMSAGTVNVP-IVFRGPN-GAASGVAA--QHSQCFGAWFTQCPGLKVVSPY----NSEDAKGLLKA 157 (207)
Q Consensus 86 ra~dqi~~~~a~~~~~~~~~~~~p-vvi~~~~-G~~~g~~~--hhs~~~~a~~~~iPgl~v~~P~----~~~e~~~ll~~ 157 (207)
.++|.+. .++ .+++| ++++.-+ +....+.. ....+....++.+ |++++.+. |..+...+++.
T Consensus 164 ~~~EAl~-~A~--------~~~L~nLi~i~d~N~~~i~~~~~~~~~~~~~~~f~a~-G~~~i~v~dG~~D~~~l~~a~~~ 233 (661)
T PTZ00089 164 VSQEALS-LAG--------HLGLEKLIVLYDDNKITIDGNTDLSFTEDVEKKYEAY-GWHVIEVDNGNTDFDGLRKAIEE 233 (661)
T ss_pred HHHHHHH-HHH--------HhCCCCEEEEEECCCcccccCcccccCccHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHHH
Confidence 5566653 556 56775 5555433 44332221 2234556788888 99999995 45556666667
Q ss_pred HHcC-CCcEEEEEC
Q psy10429 158 AIRD-PDPVVFLEN 170 (207)
Q Consensus 158 a~~~-~~P~~i~~~ 170 (207)
+.+. ++|++|.-.
T Consensus 234 a~~~~~~P~~I~~~ 247 (661)
T PTZ00089 234 AKKSKGKPKLIIVK 247 (661)
T ss_pred HHhcCCCcEEEEEE
Confidence 7664 689998544
No 218
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=67.67 E-value=75 Score=29.77 Aligned_cols=140 Identities=13% Similarity=0.081 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccc--hhHHHHHHHHHHHhc-CCccEEEechh-h
Q psy10429 7 LNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPI--TEIGFAGIAVGAAMA-GLRPVCEFMTF-N 82 (207)
Q Consensus 7 ~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gI--aE~~~vg~A~GlA~~-G~~pi~~~~~~-~ 82 (207)
+-..|.+.+.++... ++..|.+.. .+.. .. +.+.+|+..+- +=-..+..|+|.+++ +.++++ +..- .
T Consensus 361 ~~~~l~~~l~~~~~~-ii~~D~G~~--~~~~-~~----~~~~~~~~~~~~g~mG~glpaaiGa~lA~~~r~v~-i~GDG~ 431 (535)
T TIGR03394 361 IARAVNDRFARHGQM-PLAADIGDC--LFTA-MD----MDDAGLMAPGYYAGMGFGVPAGIGAQCTSGKRILT-LVGDGA 431 (535)
T ss_pred HHHHHHHHhCCCCCE-EEEEccCHH--HHHH-Hh----cCCCcEECcCccchhhhHHHHHHHHHhCCCCCeEE-EEeChH
Confidence 445566666655443 233344321 1111 11 22356665531 122334455555555 455544 4432 2
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCC-CCCCCC--CCC--------CchhHhHHHcCCCCcEEEeeCCHHHH
Q psy10429 83 FSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPN-GAASGV--AAQ--------HSQCFGAWFTQCPGLKVVSPYNSEDA 151 (207)
Q Consensus 83 ~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~-G~~~g~--~~h--------hs~~~~a~~~~iPgl~v~~P~~~~e~ 151 (207)
|.+. ...|- .+. +.++|++++.-+ +.. +. ..| ...++.++.+.+ |..-..-.+++|.
T Consensus 432 f~m~-~~EL~-Ta~--------r~~lpv~~vV~NN~~y-~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL 499 (535)
T TIGR03394 432 FQMT-GWELG-NCR--------RLGIDPIVILFNNASW-EMLRVFQPESAFNDLDDWRFADMAAGM-GGDGVRVRTRAEL 499 (535)
T ss_pred HHhH-HHHHH-HHH--------HcCCCcEEEEEECCcc-ceeehhccCCCcccCCCCCHHHHHHHc-CCCceEeCCHHHH
Confidence 3333 33332 334 678998877654 332 21 001 112334455544 6666778889999
Q ss_pred HHHHHHHHcCCC-cEEE
Q psy10429 152 KGLLKAAIRDPD-PVVF 167 (207)
Q Consensus 152 ~~ll~~a~~~~~-P~~i 167 (207)
+..++.+++.++ |++|
T Consensus 500 ~~al~~a~~~~~~p~lI 516 (535)
T TIGR03394 500 AAALDKAFATRGRFQLI 516 (535)
T ss_pred HHHHHHHHhcCCCeEEE
Confidence 999999998755 6666
No 219
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=67.25 E-value=30 Score=29.76 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=35.0
Q ss_pred CccCCEEEEeCCCCCCCCCCCC-----chhHhHHHc--CCCCcEEEeeCCHHHHHHHHHHHH----cCCCcEEEEE
Q psy10429 105 TVNVPIVFRGPNGAASGVAAQH-----SQCFGAWFT--QCPGLKVVSPYNSEDAKGLLKAAI----RDPDPVVFLE 169 (207)
Q Consensus 105 ~~~~pvvi~~~~G~~~g~~~hh-----s~~~~a~~~--~iPgl~v~~P~~~~e~~~ll~~a~----~~~~P~~i~~ 169 (207)
..++|++++..+.. ++...+. ..+...+.+ .+|++.| .=.|+.+....++.|+ +.++|++|-.
T Consensus 152 ~~~lPvi~vv~NN~-~~i~~~~~~~~~~~~~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 152 LWKLPVIFVCENNG-YAISTPTSRQTAGTSIADRAAAYGIPGIRV-DGNDVLAVYEAAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred hhCCCEEEEEeeCC-eeccCCHHHHhCCccHHHHHHhCCCCEEEE-CCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 67899999887533 2322211 112223333 3454433 2235677777777666 4588998844
No 220
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=64.79 E-value=90 Score=29.72 Aligned_cols=142 Identities=18% Similarity=0.160 Sum_probs=93.7
Q ss_pred HHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEechh-hHHHHHHH
Q psy10429 11 LDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTF-NFSMQAID 89 (207)
Q Consensus 11 L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~-~~~~ra~d 89 (207)
++++.+..-+-++++. | +-++ -++-.+ +++ ++--.-+=|.|.++-=.|.|+|..-.+|++-+... .....-|-
T Consensus 15 ~eeL~r~GV~~vvicP--G-SRST-PLala~-~~~-~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl~P 88 (566)
T COG1165 15 LEELARLGVRDVVICP--G-SRST-PLALAA-AAH-DAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANLYP 88 (566)
T ss_pred HHHHHHcCCcEEEECC--C-CCCc-HHHHHH-Hhc-CCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhccH
Confidence 3445556677788877 3 2222 233333 445 35567789999999999999999999998877643 33333444
Q ss_pred HHHHHHhhhhhhccCCccCCEEEEeCCCCC--CCCCCCCchhHhHHHcCCCCcEEE--eeCCHHHHHHHHHHHH------
Q psy10429 90 HIINSAAKTFYMSAGTVNVPIVFRGPNGAA--SGVAAQHSQCFGAWFTQCPGLKVV--SPYNSEDAKGLLKAAI------ 159 (207)
Q Consensus 90 qi~~~~a~~~~~~~~~~~~pvvi~~~~G~~--~g~~~hhs~~~~a~~~~iPgl~v~--~P~~~~e~~~ll~~a~------ 159 (207)
.|. ++. +..+|+|+..+|=+. .+-|.-+..+-..+|.+-|...+= .|.+..++...+++..
T Consensus 89 AVi-EA~--------~srvpLIVLTADRP~EL~~~GAnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~ 159 (566)
T COG1165 89 AVI-EAN--------LSRVPLIVLTADRPPELRGCGANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQ 159 (566)
T ss_pred HHH-hhh--------hcCCceEEEeCCCCHHHhcCCCchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 444 666 679999999987443 355555666677888888877554 4666666666665432
Q ss_pred ---cCCCcEEE
Q psy10429 160 ---RDPDPVVF 167 (207)
Q Consensus 160 ---~~~~P~~i 167 (207)
...+||=|
T Consensus 160 a~~~~~GpVHi 170 (566)
T COG1165 160 ARTPHAGPVHI 170 (566)
T ss_pred ccCCCCCceEe
Confidence 24677754
No 221
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=64.26 E-value=16 Score=34.75 Aligned_cols=60 Identities=22% Similarity=0.219 Sum_probs=38.8
Q ss_pred HHHHHHH--HHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCchhHh--------HHHcCCCCcEEEeeC---CHHHHHH
Q psy10429 87 AIDHIIN--SAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFG--------AWFTQCPGLKVVSPY---NSEDAKG 153 (207)
Q Consensus 87 a~dqi~~--~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs~~~~--------a~~~~iPgl~v~~P~---~~~e~~~ 153 (207)
+.|||+. .+|+. ....|+++--.+|.. |.|||-+|. +-+|+.+|+.++.=+ +|++++.
T Consensus 160 tIeqI~svi~IAka------~P~~pIilq~egGra---GGHHSweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~ 230 (717)
T COG4981 160 TIEQIRSVIRIAKA------NPTFPIILQWEGGRA---GGHHSWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAP 230 (717)
T ss_pred cHHHHHHHHHHHhc------CCCCceEEEEecCcc---CCccchhhcccHHHHHHHHHhcCCCEEEEecCCcCChhhccc
Confidence 3566663 45553 567798887664433 448885542 668899999998754 5666654
Q ss_pred HH
Q psy10429 154 LL 155 (207)
Q Consensus 154 ll 155 (207)
-+
T Consensus 231 YL 232 (717)
T COG4981 231 YL 232 (717)
T ss_pred cc
Confidence 43
No 222
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=64.17 E-value=31 Score=31.77 Aligned_cols=65 Identities=22% Similarity=0.188 Sum_probs=34.7
Q ss_pred CccCCEEEEeCC-CCCCCCCC--CCch-hHhHHHc--CCCCcEEEeeCCHHHHH----HHHHHHHcCCCcEEEEEC
Q psy10429 105 TVNVPIVFRGPN-GAASGVAA--QHSQ-CFGAWFT--QCPGLKVVSPYNSEDAK----GLLKAAIRDPDPVVFLEN 170 (207)
Q Consensus 105 ~~~~pvvi~~~~-G~~~g~~~--hhs~-~~~a~~~--~iPgl~v~~P~~~~e~~----~ll~~a~~~~~P~~i~~~ 170 (207)
..++||+++..+ +...+... +... ++..... .+|++.| .=.|..+.. .+++.+.+.++|++|-..
T Consensus 249 ~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~V-DG~D~~av~~a~~~A~~~Ar~g~gP~LIe~~ 323 (433)
T PLN02374 249 LWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHV-DGMDVLKVREVAKEAIERARRGEGPTLVECE 323 (433)
T ss_pred HhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEE-CCCCHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 679999998865 43323211 1111 2222222 4666654 234444444 455666667899998543
No 223
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=63.44 E-value=72 Score=25.46 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHhcCCccEEEech
Q psy10429 57 EIGFAGIAVGAAMAGLRPVCEFMT 80 (207)
Q Consensus 57 E~~~vg~A~GlA~~G~~pi~~~~~ 80 (207)
+..+-..++++|..|...|+...+
T Consensus 69 ~~~~~~~iaa~a~aG~~VIvD~v~ 92 (174)
T PF07931_consen 69 YAAMHAAIAAMARAGNNVIVDDVF 92 (174)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--
T ss_pred HHHHHHHHHHHHhCCCCEEEecCc
Confidence 445555556666666666666443
No 224
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=61.77 E-value=65 Score=28.86 Aligned_cols=65 Identities=25% Similarity=0.297 Sum_probs=36.9
Q ss_pred CccCCEEEEeCCCC-CCCCCC--CC-chhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHc---CCCcEEEEEC
Q psy10429 105 TVNVPIVFRGPNGA-ASGVAA--QH-SQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIR---DPDPVVFLEN 170 (207)
Q Consensus 105 ~~~~pvvi~~~~G~-~~g~~~--hh-s~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~---~~~P~~i~~~ 170 (207)
.+++|++++..+.. ..+... +. +...-+-...+|++.| -=.|..+....++.|++ .++|++|-..
T Consensus 186 ~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~~~~p~~~V-DG~D~~av~~a~~~A~~~aR~~gP~lIe~~ 257 (362)
T PLN02269 186 LWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKV-DGMDVLAVKQACKFAKEHALSNGPIVLEMD 257 (362)
T ss_pred ccCcCEEEEEeCCCEeccCchhhhccchHHHHhhcCCCeEEE-CCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 67999999987633 222111 11 1111122245777765 55566666666666653 2889998654
No 225
>COG3231 Aph Aminoglycoside phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=59.04 E-value=27 Score=29.73 Aligned_cols=79 Identities=20% Similarity=0.242 Sum_probs=55.5
Q ss_pred CCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCchhHhHHHcCCCCcEEEeeC---C
Q psy10429 71 GLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGAWFTQCPGLKVVSPY---N 147 (207)
Q Consensus 71 G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs~~~~a~~~~iPgl~v~~P~---~ 147 (207)
+.+|.++.... ...++..+-.+++.++|..+-...+|=|+--. .|.++... +|..+||+....|+ +
T Consensus 41 ~~r~g~~~k~~--~~~~~a~L~~Ea~RlrWla~~~l~~P~V~~~~--------~~~~~~wL-l~salpG~~~s~~~~~~~ 109 (266)
T COG3231 41 DSRPGLYLKIA--SSGPAAELEGEAARLRWLAGQGLGCPRVLGLE--------DDADQAWL-LMSALPGEDASHPRYALD 109 (266)
T ss_pred cCCCceEEEEe--cCcchhhhhhHHHHHHHhcccCCCCCceEeec--------cCcchhHH-hhhhcCCCcccchhhcCC
Confidence 34555555432 22344555678999999998778888553222 14455565 88999999999998 8
Q ss_pred HHHHHHHHHHHHc
Q psy10429 148 SEDAKGLLKAAIR 160 (207)
Q Consensus 148 ~~e~~~ll~~a~~ 160 (207)
|+.+-.++..+++
T Consensus 110 p~r~v~~la~aLR 122 (266)
T COG3231 110 PKRAVPLLAEALR 122 (266)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888887
No 226
>PRK12753 transketolase; Reviewed
Probab=55.79 E-value=70 Score=31.07 Aligned_cols=75 Identities=12% Similarity=0.113 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhhhhccCCccCC-EEEEeC-CCCCCCC--CCCCchhHhHHHcCCCCcEEEeeCCHHHHHHH---HHHH
Q psy10429 86 QAIDHIINSAAKTFYMSAGTVNVP-IVFRGP-NGAASGV--AAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGL---LKAA 158 (207)
Q Consensus 86 ra~dqi~~~~a~~~~~~~~~~~~p-vvi~~~-~G~~~g~--~~hhs~~~~a~~~~iPgl~v~~P~~~~e~~~l---l~~a 158 (207)
.++|.+ +.++ .+++| ++++.- ++....+ ....+.+....++.. |++++.+.|..|...+ ++.|
T Consensus 162 ~~~EA~-~~A~--------~~kL~nLi~ivd~N~~~i~~~~~~~~~~~~~~~f~a~-Gw~~~~~vDGhD~~~i~~a~~~a 231 (663)
T PRK12753 162 ISHEVC-SLAG--------TLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAY-HWHVIHEIDGHDPQAIKEAILEA 231 (663)
T ss_pred HHHHHH-HHHH--------HHCCCCEEEEEECCCCcCCCChhhhcChhHHHHHHHc-CCeEEceeCCCCHHHHHHHHHHH
Confidence 455554 3566 56886 555543 3444322 223345556888888 9999976676665554 4555
Q ss_pred HcC-CCcEEEEEC
Q psy10429 159 IRD-PDPVVFLEN 170 (207)
Q Consensus 159 ~~~-~~P~~i~~~ 170 (207)
.+. ++|++|.-.
T Consensus 232 ~~~~~~P~~I~~~ 244 (663)
T PRK12753 232 QSVKDKPSLIICR 244 (663)
T ss_pred HHCCCCeEEEEEE
Confidence 544 789988543
No 227
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=55.38 E-value=13 Score=32.89 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEec
Q psy10429 5 DALNSALDEEMARDEKVFLLGE 26 (207)
Q Consensus 5 ~a~~~~L~~~~~~~~~vv~~~~ 26 (207)
..|.++|...+++||+|+++|+
T Consensus 185 ~sF~~aLraALReDPDVIlvGE 206 (353)
T COG2805 185 LSFANALRAALREDPDVILVGE 206 (353)
T ss_pred HHHHHHHHHHhhcCCCEEEEec
Confidence 4689999999999999999997
No 228
>KOG1185|consensus
Probab=54.66 E-value=1.3e+02 Score=28.51 Aligned_cols=113 Identities=22% Similarity=0.232 Sum_probs=62.7
Q ss_pred hhhhcCCCceeeccchhHHHHHHHHHHHhc-----CCccEEEechh-hHHHHHHHHHHHHHhhhhhhccCCccCCEEEEe
Q psy10429 41 LWKKYGDKRVLDTPITEIGFAGIAVGAAMA-----GLRPVCEFMTF-NFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRG 114 (207)
Q Consensus 41 l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-----G~~pi~~~~~~-~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~ 114 (207)
|..+. |.|..|.|-- +.+|++.|.|++ =-+.++..+.- .|-+-++| ..-++ ..++||+++.
T Consensus 415 l~~~~-Pr~rLDaGtf--gTMGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME--~ET~v--------R~~Lpvv~vV 481 (571)
T KOG1185|consen 415 LPPRG-PRRRLDAGTF--GTMGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAME--LETFV--------RYKLPVVIVV 481 (571)
T ss_pred ccCCC-cccccCCccc--cccccchhHHHHHHhhCCCCeEEEEecCcccCcchhh--HHHHH--------HhcCCeEEEE
Confidence 33444 7888998854 445666665553 22445555521 11222333 12333 5799988875
Q ss_pred C-CCCCCCCCC------------CCc--------hhHhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcC-CCcEEE
Q psy10429 115 P-NGAASGVAA------------QHS--------QCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRD-PDPVVF 167 (207)
Q Consensus 115 ~-~G~~~g~~~------------hhs--------~~~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~-~~P~~i 167 (207)
. +++.+|... +.+ ..++-++..+ |.+=+.-.+++|.+..++.+.+. ++|++|
T Consensus 482 ~NN~Giyg~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~-G~kG~~v~t~~el~~~l~~a~q~~~~psvI 555 (571)
T KOG1185|consen 482 GNNNGIYGLDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAF-GGKGYFVSTVEELLAALQQACQDTDKPSVI 555 (571)
T ss_pred ecCCcccccCcccHHHHhhcCcccCCCcccccccccHHHHHHHc-CCCceeeCCHHHHHHHHHHHHhcCCCCeEE
Confidence 4 444333211 110 1123344444 44555556999999999999887 599887
No 229
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=53.52 E-value=49 Score=31.24 Aligned_cols=153 Identities=16% Similarity=0.210 Sum_probs=90.9
Q ss_pred HHHHHHHHHhc--CCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhH
Q psy10429 7 LNSALDEEMAR--DEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNF 83 (207)
Q Consensus 7 ~~~~L~~~~~~--~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~ 83 (207)
+++.|.+.+.+ -.++|.+-.|. + +.+.+.+ ..+|.-|++.+ -.|-|..=.|=|+|+- |.-.++-+|.+.-
T Consensus 6 vG~YL~~RL~qlgi~~iFGVPGDy---N--L~lLD~i-~~~~~lrWvGn-~NELNaaYAADGYaR~~Gi~alvTTfGVGE 78 (557)
T COG3961 6 VGDYLFDRLAQLGIKSIFGVPGDY---N--LSLLDKI-YSVPGLRWVGN-ANELNAAYAADGYARLNGISALVTTFGVGE 78 (557)
T ss_pred HHHHHHHHHHhcCCceeeeCCCcc---c--HHHHHHh-hcCCCceeecc-cchhhhhhhhcchhhhcCceEEEEecccch
Confidence 45555555543 25566665553 2 2333333 34434455433 3588888888899985 9999999998753
Q ss_pred HHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCC----CCCCCCch---hHhHHHcCCCCcE----EEeeCC--HHH
Q psy10429 84 SMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS----GVAAQHSQ---CFGAWFTQCPGLK----VVSPYN--SED 150 (207)
Q Consensus 84 ~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~----g~~~hhs~---~~~a~~~~iPgl~----v~~P~~--~~e 150 (207)
.-|++-|--+-| .++||+.+.-.-.+. +---||+. ++.-+++--..+. .+.+.+ +.|
T Consensus 79 -LSA~NGIAGSYA---------E~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~e 148 (557)
T COG3961 79 -LSALNGIAGSYA---------EHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPRE 148 (557)
T ss_pred -hhhhcccchhhh---------hcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHH
Confidence 357776653333 589988764321111 22347763 2222222222222 234444 688
Q ss_pred HHHHHHHHHcCCCcEEEEECcccccc
Q psy10429 151 AKGLLKAAIRDPDPVVFLENELLYGV 176 (207)
Q Consensus 151 ~~~ll~~a~~~~~P~~i~~~k~l~~~ 176 (207)
...+++.++...+|+||..|....+.
T Consensus 149 IDrvi~~~~~~~RPvYI~lP~dva~~ 174 (557)
T COG3961 149 IDRVIRTALKQRRPVYIGLPADVADL 174 (557)
T ss_pred HHHHHHHHHHhcCCeEEEcchHHhcC
Confidence 88999999999999999877655543
No 230
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=47.81 E-value=1e+02 Score=29.61 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=23.9
Q ss_pred HcCCCCcEEEeeCCHHHHHHHHH---HHHcCCCcEEEEE
Q psy10429 134 FTQCPGLKVVSPYNSEDAKGLLK---AAIRDPDPVVFLE 169 (207)
Q Consensus 134 ~~~iPgl~v~~P~~~~e~~~ll~---~a~~~~~P~~i~~ 169 (207)
|+.+ |+.++-|.|..|...+.+ .+-+.++|++|.-
T Consensus 234 f~~~-G~~~~~~vDGhd~~~l~~al~~ak~~~~P~~i~~ 271 (617)
T TIGR00204 234 FEEL-GFNYIGPVDGHDLLELIETLKNAKKLKGPVFLHI 271 (617)
T ss_pred HHHc-CCcEEcccCCCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 4445 788887888876666555 4445578999853
No 231
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=43.66 E-value=1.5e+02 Score=28.71 Aligned_cols=38 Identities=26% Similarity=0.419 Sum_probs=26.7
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHH---HHc-CCCcEEEEEC
Q psy10429 132 AWFTQCPGLKVVSPYNSEDAKGLLKA---AIR-DPDPVVFLEN 170 (207)
Q Consensus 132 a~~~~iPgl~v~~P~~~~e~~~ll~~---a~~-~~~P~~i~~~ 170 (207)
..|+.+ |+.++-|.|..|...+.+. +-+ .++|++|.-.
T Consensus 240 ~~f~a~-G~~~~~~vdGhd~~~l~~al~~ak~~~~~P~~I~~~ 281 (641)
T PRK12571 240 TLFEEL-GFTYVGPIDGHDMEALLSVLRAARARADGPVLVHVV 281 (641)
T ss_pred hHHHHc-CCEEECccCCCCHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 456666 9999988888777766554 434 4789988543
No 232
>KOG0816|consensus
Probab=42.83 E-value=58 Score=26.94 Aligned_cols=60 Identities=12% Similarity=0.276 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHh
Q psy10429 3 VRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAM 69 (207)
Q Consensus 3 ~~~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~ 69 (207)
.++++.+.+.+...+.+.++++.-+ .+.+.. .++++++|-..||| .-+..++.+|.|.+.
T Consensus 22 ~K~~i~~~ir~~vd~Y~~v~Vf~~~-nMRn~~---lk~iR~~~k~sr~f---~GknKVm~vaLG~~~ 81 (223)
T KOG0816|consen 22 KKEAIVEEIREAVDKYPYVFVFEVP-NMRNTT---LKEIRQDFKNSRFF---FGKNKVMQVALGRSR 81 (223)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEEcC-CcchHH---HHHHHHHhhcccee---cchhhHHHHHhcCCc
Confidence 5778999999999999999999865 344533 47899888446666 468899999999987
No 233
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=42.78 E-value=1.8e+02 Score=26.25 Aligned_cols=111 Identities=19% Similarity=0.166 Sum_probs=65.6
Q ss_pred chhHHHHHHHHHHHhcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEE--------E-eCCCCCCCCCCC
Q psy10429 55 ITEIGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVF--------R-GPNGAASGVAAQ 125 (207)
Q Consensus 55 IaE~~~vg~A~GlA~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi--------~-~~~G~~~g~~~h 125 (207)
+++.+....|.|++..|..-...--. + .-|+++....+.+-.+.+.+.++... + ..-|.-+|.+.|
T Consensus 90 ~s~~a~~aLa~aa~~aG~~~~~Gegg--~---~~~~~~~~~~~i~q~~~~~fGv~~~~~~~~~~ieik~~QGAkpg~gg~ 164 (392)
T cd02808 90 LSKEAKEALAIGAALAGTASNTGEGG--E---LPEEREGGGDIIKQVASGRFGVRPEYLNKADAIEIKIGQGAKPGEGGH 164 (392)
T ss_pred ccHHHHHHHHHHHHhcCCceeecCCC--C---CHHHHhhhhheEEEecCCCCccCHHHcccCcEEEEEeccCCCCCCCCc
Confidence 45777789999999998654433111 1 13333334343333344445554311 1 111332332222
Q ss_pred C----chhHhHHHcCC-CCcEEEee------CCHHHHHHHHHHHHcC-C-CcEEEEEC
Q psy10429 126 H----SQCFGAWFTQC-PGLKVVSP------YNSEDAKGLLKAAIRD-P-DPVVFLEN 170 (207)
Q Consensus 126 h----s~~~~a~~~~i-Pgl~v~~P------~~~~e~~~ll~~a~~~-~-~P~~i~~~ 170 (207)
- -...++..|++ |+-.+++| .+++++...+++.-+. + .|+.+.+.
T Consensus 165 l~~~Kv~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~ 222 (392)
T cd02808 165 LPGEKVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLV 222 (392)
T ss_pred cccccCCHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 2 13567999999 88888898 7788889999888775 4 69988654
No 234
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=42.20 E-value=2.6e+02 Score=27.16 Aligned_cols=75 Identities=9% Similarity=0.099 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhhhhccCCccCC-EEEEeC-CCCCCCC--CCCCchhHhHHHcCCCCcEEEeeCCH---HHHHHHHHHH
Q psy10429 86 QAIDHIINSAAKTFYMSAGTVNVP-IVFRGP-NGAASGV--AAQHSQCFGAWFTQCPGLKVVSPYNS---EDAKGLLKAA 158 (207)
Q Consensus 86 ra~dqi~~~~a~~~~~~~~~~~~p-vvi~~~-~G~~~g~--~~hhs~~~~a~~~~iPgl~v~~P~~~---~e~~~ll~~a 158 (207)
..+|.+. .++ .+++| ++++.- ++....+ ....+.+....++.. |+.++.-.|. .+...+++.+
T Consensus 158 ~~~EA~~-~A~--------~~~L~nLi~ivd~N~~~i~~~~~~~~~~~~~~~~~a~-Gw~~~~v~DG~D~~ai~~A~~~a 227 (653)
T TIGR00232 158 ISYEVAS-LAG--------HLKLGKLIVLYDSNRISIDGAVDGSFTEDVAKRFEAY-GWEVLEVEDGHDLAAIDAAIEEA 227 (653)
T ss_pred HHHHHHH-HHH--------HhCCCcEEEEEeCCCeeeccccccccCccHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHH
Confidence 3555543 555 57888 444443 2333222 112234556788888 9999876454 4555555556
Q ss_pred HcC-CCcEEEEEC
Q psy10429 159 IRD-PDPVVFLEN 170 (207)
Q Consensus 159 ~~~-~~P~~i~~~ 170 (207)
.+. ++|++|.-.
T Consensus 228 ~~~~~~P~~I~~~ 240 (653)
T TIGR00232 228 KASKDKPTLIEVT 240 (653)
T ss_pred HhCCCCCEEEEEE
Confidence 555 489998654
No 235
>KOG1184|consensus
Probab=41.09 E-value=63 Score=30.53 Aligned_cols=151 Identities=17% Similarity=0.195 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcC--CcEEEEecCCCccCCchhhchhhhhhcCCCceeeccchhHHHHHHHHHHHhc-CCccEEEechhhH
Q psy10429 7 LNSALDEEMARD--EKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMTFNF 83 (207)
Q Consensus 7 ~~~~L~~~~~~~--~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~~~~ 83 (207)
+++.|.+.+.+- .+++.+-.|. + ..++ ++.++.|.-|++.+ -.|-|..=.|=|+|+. |.-.++.+|...
T Consensus 6 ~G~YLf~RL~q~gvksvfgVPGDF---N--L~LL-D~l~~~~~lrwvGn-~NELNaAYAADGYAR~~Gi~a~VtTfgVG- 77 (561)
T KOG1184|consen 6 LGEYLFRRLVQAGVKTVFGVPGDF---N--LSLL-DKLYAVPGLRWVGN-CNELNAAYAADGYARSKGIGACVTTFGVG- 77 (561)
T ss_pred HHHHHHHHHHHcCCceeEECCCcc---c--HHHH-HHhhhcCCceeecc-cchhhhhhhhcchhhhcCceEEEEEeccc-
Confidence 455665555532 4566665554 2 1333 44455544344332 3577887888899996 988999999875
Q ss_pred HHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCC--CCC--CCCCch---hHhHHHcCCCCcEE--EeeCCHHHHHH-
Q psy10429 84 SMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAA--SGV--AAQHSQ---CFGAWFTQCPGLKV--VSPYNSEDAKG- 153 (207)
Q Consensus 84 ~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~--~g~--~~hhs~---~~~a~~~~iPgl~v--~~P~~~~e~~~- 153 (207)
-.-|++-|--. | -.++||+.+.-.-.+ .+. --||.. ++.-.+|...++.. .+=-|.++|..
T Consensus 78 eLSAlNGIAGs--Y-------AE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ 148 (561)
T KOG1184|consen 78 ELSALNGIAGA--Y-------AENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQ 148 (561)
T ss_pred hhhhhcccchh--h-------hhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHH
Confidence 34577766432 2 358998877532111 122 237742 22233333333322 22335555554
Q ss_pred ---HHHHHHcCCCcEEEEECcccc
Q psy10429 154 ---LLKAAIRDPDPVVFLENELLY 174 (207)
Q Consensus 154 ---ll~~a~~~~~P~~i~~~k~l~ 174 (207)
+++.|+...+|+||-.|..+-
T Consensus 149 ID~aI~~~~~~~rPVYi~iP~n~~ 172 (561)
T KOG1184|consen 149 IDKAIRTALKESKPVYIGVPANLA 172 (561)
T ss_pred HHHHHHHHHHhcCCeEEEeecccc
Confidence 566666689999998876544
No 236
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=40.03 E-value=1.9e+02 Score=25.23 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=35.3
Q ss_pred CccCCEEEEeCCCCCCCCCCC----C-chhHh--HHHcCCCCcEEEeeCCHHHHHHHHHHHH----cCCCcEEEEEC
Q psy10429 105 TVNVPIVFRGPNGAASGVAAQ----H-SQCFG--AWFTQCPGLKVVSPYNSEDAKGLLKAAI----RDPDPVVFLEN 170 (207)
Q Consensus 105 ~~~~pvvi~~~~G~~~g~~~h----h-s~~~~--a~~~~iPgl~v~~P~~~~e~~~ll~~a~----~~~~P~~i~~~ 170 (207)
..++|++++..+.. ++...+ . +.+.. +---.+|++.| .=.|+.+....++.|+ +.++|++|-..
T Consensus 158 ~~~lPvi~vv~NN~-yg~s~~~~~~~~~~~~a~~A~a~G~~~~~V-dg~d~~av~~a~~~A~~~ar~~~gP~lIe~~ 232 (315)
T TIGR03182 158 LWKLPVIFVIENNL-YAMGTSVERSSSVTDLYKRGESFGIPGERV-DGMDVLAVREAAKEAVERARSGKGPILLEMK 232 (315)
T ss_pred ccCcCEEEEEEcCC-ccccCCHHHHhCCcCHHHHHHhCCCCEEEE-CCCCHHHHHHHHHHHHHHHHccCCCEEEEEe
Confidence 67999999876542 332221 1 11222 22225666554 3335666666655555 45899998543
No 237
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=37.96 E-value=45 Score=31.13 Aligned_cols=37 Identities=32% Similarity=0.329 Sum_probs=31.2
Q ss_pred HHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEEEC
Q psy10429 133 WFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLEN 170 (207)
Q Consensus 133 ~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~~~ 170 (207)
..+..| .-|+.|.+.+|...+++.|.+.+-|++.|-.
T Consensus 51 ~~~~~p-~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~ 87 (499)
T PRK11230 51 AYRTRP-LLVVLPKQMEQVQALLAVCHRLRVPVVARGA 87 (499)
T ss_pred ccCCCC-CEEEeeCCHHHHHHHHHHHHHcCCeEEEECC
Confidence 345566 5788899999999999999999999988754
No 238
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=36.59 E-value=68 Score=30.90 Aligned_cols=102 Identities=24% Similarity=0.330 Sum_probs=59.0
Q ss_pred HHHHHhcCCcEEEEecCCCccCCchhhc--hhhhhhcCCCc-----eeeccchhH--HHHHHHHHHHh-cCCccEEEech
Q psy10429 11 LDEEMARDEKVFLLGEEVALYDGAYKVS--RGLWKKYGDKR-----VLDTPITEI--GFAGIAVGAAM-AGLRPVCEFMT 80 (207)
Q Consensus 11 L~~~~~~~~~vv~~~~D~~~~~g~~~~~--~~l~~~~g~~r-----~~~~gIaE~--~~vg~A~GlA~-~G~~pi~~~~~ 80 (207)
..+++++ .=+|+.+.+.++.-|.|+-- +.|-++| |++ ..|+|-+=+ |+.|.|.=.|. -+.+|.-..+.
T Consensus 522 aeefl~R-nyiVvttGC~Am~igmykDedGkTlYEky-pg~Fd~ggLvntGsCvSnaHi~GAaIKva~IFak~plrGn~~ 599 (772)
T COG1152 522 AEEFLKR-NYIVVTTGCIAMDIGMYKDEDGKTLYEKY-PGNFDAGGLVNTGSCVSNAHIAGAAIKVANIFAKRPLRGNFA 599 (772)
T ss_pred HHHHHHc-CeEEEecchhhhhccceecccCceehhcC-CCccccCceeeccchhhhhhhhhhHHHHHHHhcCCCcCCcHH
Confidence 3444444 44555555566655555322 3477899 688 589987554 55666665554 36677654442
Q ss_pred --hhH----------HHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCC
Q psy10429 81 --FNF----------SMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAA 119 (207)
Q Consensus 81 --~~~----------~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~ 119 (207)
++| .|=+|.|...++++=..| +..|+| .||.|.-
T Consensus 600 EIADYiLNRVGAcgvAWGaySqkaasiatG~nr----~GIPvV-lGPhg~k 645 (772)
T COG1152 600 EIADYILNRVGACGVAWGAYSQKAASIATGCNR----WGIPVV-LGPHGSK 645 (772)
T ss_pred HHHHHHHhcCceeEEeehhhhHHHHHHhcCccc----cCCceE-ECCCchH
Confidence 122 355788877777753333 346755 5665544
No 239
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=34.42 E-value=59 Score=28.31 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=26.5
Q ss_pred EEEeeCCHHHHHHHHHHHHcCCCcEEEEE
Q psy10429 141 KVVSPYNSEDAKGLLKAAIRDPDPVVFLE 169 (207)
Q Consensus 141 ~v~~P~~~~e~~~ll~~a~~~~~P~~i~~ 169 (207)
-++.|.|.+|+..++++|-+.+-|++++-
T Consensus 39 ~vv~p~~~edv~~~l~~a~~~~ip~~v~G 67 (305)
T PRK12436 39 VFVAPTNYDEIQEVIKYANKYNIPVTFLG 67 (305)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 57899999999999999999999999874
No 240
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=34.13 E-value=2.8e+02 Score=23.12 Aligned_cols=141 Identities=16% Similarity=0.106 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCCCceeecc--------------chh-HHHHHHHHHH-H
Q psy10429 5 DALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTP--------------ITE-IGFAGIAVGA-A 68 (207)
Q Consensus 5 ~a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~g--------------IaE-~~~vg~A~Gl-A 68 (207)
+.+.+.|.++..+..++++..... .. .......++||.-+|+.+. ..| .-+.|+++|+ +
T Consensus 44 ~~~~~~i~~~~~~g~dlIi~~g~~--~~---~~~~~vA~~~p~~~F~~~d~~~~~~Nv~~~~~~~~e~~ylaG~~Aa~~t 118 (258)
T cd06353 44 ADAERVLRELAAQGYDLIFGTSFG--FM---DAALKVAKEYPDVKFEHCSGYKTAPNVGSYFARIYEGRYLAGVVAGKMT 118 (258)
T ss_pred HhHHHHHHHHHHcCCCEEEECchh--hh---HHHHHHHHHCCCCEEEECCCCCCCCCeeeEechhhHHHHHHHHHHHHhh
Confidence 456778888888888888874421 11 2235677889766666532 112 1456655554 4
Q ss_pred hcCCccEEEechhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCchh-HhHHHcCCCCcEEEeeCC
Q psy10429 69 MAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQC-FGAWFTQCPGLKVVSPYN 147 (207)
Q Consensus 69 ~~G~~pi~~~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs~~-~~a~~~~iPgl~v~~P~~ 147 (207)
.+|..-|+..+-...+.+-..-...-+-+. ..+..+...-. | .+. .+.-+.. -+.++.. |..|+.+..
T Consensus 119 ~t~kVG~I~g~~~~~~~~~~~gF~~G~~~~------~p~~~v~~~~~-g-~~~-D~~~a~~~a~~l~~~--G~DvI~~~~ 187 (258)
T cd06353 119 KTNKVGYVAAFPIPEVVRGINAFALGARSV------NPDATVKVIWT-G-SWF-DPAKEKEAALALIDQ--GADVIYQHT 187 (258)
T ss_pred cCCcEEEEcCcccHHHHHHHHHHHHHHHHH------CCCcEEEEEEe-c-CCC-CcHHHHHHHHHHHHC--CCcEEEecC
Confidence 456655555553233222222222222211 22333332211 1 100 1111122 2356654 778888887
Q ss_pred HHHHHHHHHHHHcCCC
Q psy10429 148 SEDAKGLLKAAIRDPD 163 (207)
Q Consensus 148 ~~e~~~ll~~a~~~~~ 163 (207)
...+.+.+|.+.+.
T Consensus 188 --~~~g~~~aa~~~g~ 201 (258)
T cd06353 188 --DSPGVIQAAEEKGV 201 (258)
T ss_pred --CChHHHHHHHHhCC
Confidence 55678887777553
No 241
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=33.71 E-value=71 Score=28.69 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=31.9
Q ss_pred HHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEEEC
Q psy10429 133 WFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLEN 170 (207)
Q Consensus 133 ~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~~~ 170 (207)
..+..|. .|+.|.+.+|...+++.|.+++-|++.|-.
T Consensus 27 ~~~~~p~-~v~~p~s~~eV~~iv~~a~~~~~~v~prG~ 63 (459)
T COG0277 27 VYRGLPL-AVVFPKSEEEVAAILRLANENGIPVVPRGG 63 (459)
T ss_pred hhcCCCC-EEEccCCHHHHHHHHHHHHHcCCeEEEECC
Confidence 4455665 899999999999999999999999998854
No 242
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=33.17 E-value=2.3e+02 Score=28.41 Aligned_cols=69 Identities=6% Similarity=0.015 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhhhhhccCCccCCEEEEeCCC-CCCC-------CCCCCc--hh----HhHHHcCCCCcEEEeeCCHHH
Q psy10429 85 MQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNG-AASG-------VAAQHS--QC----FGAWFTQCPGLKVVSPYNSED 150 (207)
Q Consensus 85 ~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G-~~~g-------~~~hhs--~~----~~a~~~~iPgl~v~~P~~~~e 150 (207)
.|=|+|+..... ..+.|++++=-+. -... .+..+. .. ...+...+|+++|+-.++|.|
T Consensus 644 gRL~~Q~~~m~~--------~Y~~PvLLIE~d~~~~f~l~~~~~~~~~~~~~~~~i~~~L~~L~l~fP~l~IiwS~s~~~ 715 (814)
T TIGR00596 644 GRLYNQCEKMLR--------YYAYPVLLIEFDQNKSFSLEPRNDLSQEISSVNNDIQQKLALLTLHFPKLRIIWSSSPYA 715 (814)
T ss_pred chHHHHHHHHHH--------hcCCcEEEEEecCCcccccccccccccccCccHHHHHHHHHHHHHhcCCceEEecCCHHH
Confidence 478899874444 5688988883332 1111 111111 11 346778889999999999999
Q ss_pred HHHHHHHHHcC
Q psy10429 151 AKGLLKAAIRD 161 (207)
Q Consensus 151 ~~~ll~~a~~~ 161 (207)
+..++......
T Consensus 716 TA~i~~~Lk~~ 726 (814)
T TIGR00596 716 TAEIFEELKLG 726 (814)
T ss_pred HHHHHHHHHhc
Confidence 99999987664
No 243
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=32.39 E-value=71 Score=27.47 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=26.5
Q ss_pred EEEeeCCHHHHHHHHHHHHcCCCcEEEEE
Q psy10429 141 KVVSPYNSEDAKGLLKAAIRDPDPVVFLE 169 (207)
Q Consensus 141 ~v~~P~~~~e~~~ll~~a~~~~~P~~i~~ 169 (207)
.++.|.+.+|+..+++++-+.+-|++++-
T Consensus 15 ~~v~p~s~edl~~~l~~a~~~~~p~~vlG 43 (284)
T TIGR00179 15 HIVCPESIEQLVNVLDNAKEEDQPLLILG 43 (284)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 67899999999999999999999999864
No 244
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=32.31 E-value=2e+02 Score=24.16 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=23.4
Q ss_pred HHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEEE
Q psy10429 132 AWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLE 169 (207)
Q Consensus 132 a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~~ 169 (207)
.++..=++-.|+.|.++......++.+.+.+-|+++..
T Consensus 49 ~l~~~~vDgIIi~~~~~~~~~~~l~~~~~~~iPvV~~d 86 (302)
T TIGR02634 49 NLIARGVDVLVIIPQNGQVLSNAVQEAKDEGIKVVAYD 86 (302)
T ss_pred HHHHcCCCEEEEeCCChhHHHHHHHHHHHCCCeEEEec
Confidence 44445456666677766655566666666666776653
No 245
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=31.80 E-value=2.4e+02 Score=22.03 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcCC
Q psy10429 8 NSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGD 47 (207)
Q Consensus 8 ~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~ 47 (207)
.+.+...-.++.+++++|++-.. .-.....|+++||.
T Consensus 38 ~~l~~~~~~~~~~ifllG~~~~~---~~~~~~~l~~~yP~ 74 (172)
T PF03808_consen 38 PDLLRRAEQRGKRIFLLGGSEEV---LEKAAANLRRRYPG 74 (172)
T ss_pred HHHHHHHHHcCCeEEEEeCCHHH---HHHHHHHHHHHCCC
Confidence 33344444455777777764321 11233467777753
No 246
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=31.57 E-value=44 Score=30.18 Aligned_cols=29 Identities=31% Similarity=0.326 Sum_probs=26.5
Q ss_pred EEeeCCHHHHHHHHHHHHcCCCcEEEEEC
Q psy10429 142 VVSPYNSEDAKGLLKAAIRDPDPVVFLEN 170 (207)
Q Consensus 142 v~~P~~~~e~~~ll~~a~~~~~P~~i~~~ 170 (207)
|+.|.+.+|+..+++.|-+.+-|+.++-.
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~ 29 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGA 29 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECC
Confidence 57899999999999999999999999865
No 247
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=30.42 E-value=90 Score=25.72 Aligned_cols=46 Identities=17% Similarity=0.345 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHh-cCCcEEEEecCCCccCCchhhchhhhhhcCCCceeeccch
Q psy10429 4 RDALNSALDEEMA-RDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPIT 56 (207)
Q Consensus 4 ~~a~~~~L~~~~~-~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g~~r~~~~gIa 56 (207)
|++|..+|.+.++ ..++++++..=+ . -++..|-++| +.|.+|.=-+
T Consensus 64 r~~~d~~l~~~l~~~~~dlvvLAGyM----r--IL~~~fl~~~-~grIlNIHPS 110 (200)
T COG0299 64 REAFDRALVEALDEYGPDLVVLAGYM----R--ILGPEFLSRF-EGRILNIHPS 110 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcchH----H--HcCHHHHHHh-hcceEecCcc
Confidence 7788888888776 568898885422 1 3457889999 6899997555
No 248
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=30.18 E-value=77 Score=27.57 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=26.4
Q ss_pred EEEeeCCHHHHHHHHHHHHcCCCcEEEEE
Q psy10429 141 KVVSPYNSEDAKGLLKAAIRDPDPVVFLE 169 (207)
Q Consensus 141 ~v~~P~~~~e~~~ll~~a~~~~~P~~i~~ 169 (207)
-++.|.|.+|+..+++++-+.+-|++++-
T Consensus 38 ~~v~p~~~edl~~~v~~a~~~~ip~~vlG 66 (302)
T PRK14652 38 LLVRPADPDALSALLRAVRELGVPLSILG 66 (302)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCcEEEEc
Confidence 57889999999999999999999999974
No 249
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=29.93 E-value=77 Score=27.34 Aligned_cols=30 Identities=33% Similarity=0.419 Sum_probs=26.6
Q ss_pred EEEeeCCHHHHHHHHHHHHcCCCcEEEEEC
Q psy10429 141 KVVSPYNSEDAKGLLKAAIRDPDPVVFLEN 170 (207)
Q Consensus 141 ~v~~P~~~~e~~~ll~~a~~~~~P~~i~~~ 170 (207)
.++.|.+.+|+..+++.|-+.+-|+.++-.
T Consensus 33 ~vv~P~s~edv~~~v~~a~~~~~p~~v~Gg 62 (298)
T PRK13905 33 YLVEPADIEDLQEFLKLLKENNIPVTVLGN 62 (298)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 568899999999999999998999998743
No 250
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=29.79 E-value=2.1e+02 Score=24.44 Aligned_cols=57 Identities=25% Similarity=0.220 Sum_probs=33.6
Q ss_pred CccCCEEEEeCCCCCCCCCCCCchhHhHHHcCCCCcEEEeeCC---------HHHHHHHHHHHHcCCCcEEEE
Q psy10429 105 TVNVPIVFRGPNGAASGVAAQHSQCFGAWFTQCPGLKVVSPYN---------SEDAKGLLKAAIRDPDPVVFL 168 (207)
Q Consensus 105 ~~~~pvvi~~~~G~~~g~~~hhs~~~~a~~~~iPgl~v~~P~~---------~~e~~~ll~~a~~~~~P~~i~ 168 (207)
+..-.++++|..|.+ -++...+.+.+-+++++.|.- -+|.+.++..|--.+.|+++.
T Consensus 29 ~~~Gh~LLvG~~GsG-------r~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~vfl 94 (268)
T PF12780_consen 29 QPRGHALLVGVGGSG-------RQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLKKALQKAGIKGKPTVFL 94 (268)
T ss_dssp STTEEEEEECTTTSC-------HHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHHHHHHHHHCS-S-EEEE
T ss_pred CCCCCeEEecCCCcc-------HHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHHHHHHHHhccCCCeEEE
Confidence 344567888886554 244566667777999999863 245666555554445565553
No 251
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=29.69 E-value=85 Score=23.62 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcC
Q psy10429 6 ALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYG 46 (207)
Q Consensus 6 a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g 46 (207)
.+++.|.+.+ +..+++++..|+| .|-+ .+++++.+.+|
T Consensus 3 ~la~~l~~~l-~~g~vi~L~GdLG-aGKT-tf~r~l~~~lg 40 (123)
T PF02367_consen 3 RLAKKLAQIL-KPGDVILLSGDLG-AGKT-TFVRGLARALG 40 (123)
T ss_dssp HHHHHHHHHH-SS-EEEEEEESTT-SSHH-HHHHHHHHHTT
T ss_pred HHHHHHHHhC-CCCCEEEEECCCC-CCHH-HHHHHHHHHcC
Confidence 4566666666 5568899999997 3433 45566666654
No 252
>PRK10646 ADP-binding protein; Provisional
Probab=28.89 E-value=87 Score=24.54 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcC
Q psy10429 6 ALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYG 46 (207)
Q Consensus 6 a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g 46 (207)
.+++.|...+ +..+++++..|+| .|-+ .+++++.+.+|
T Consensus 16 ~l~~~la~~l-~~g~vi~L~GdLG-aGKT-tf~rgl~~~Lg 53 (153)
T PRK10646 16 DLGARVAKAC-DGATVIYLYGDLG-AGKT-TFSRGFLQALG 53 (153)
T ss_pred HHHHHHHHhC-CCCcEEEEECCCC-CCHH-HHHHHHHHHcC
Confidence 4566666555 4456899999997 3333 34566666554
No 253
>KOG1395|consensus
Probab=28.67 E-value=4.5e+02 Score=24.03 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCccCCchhhch-----hhhhhcCCCceeeccchhHHHHHHHHHHHhcCCccEEEechh
Q psy10429 7 LNSALDEEMARDEKVFLLGEEVALYDGAYKVSR-----GLWKKYGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTF 81 (207)
Q Consensus 7 ~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~-----~l~~~~g~~r~~~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~ 81 (207)
+.+-|.++....+.|.+==+|+- .+|+-++.. -+.++.|..|++---=|=|+=++.|...|+-|+...+++-+-
T Consensus 127 ~AkRLte~~q~ga~IylKrEdln-h~GsHKiNnav~QallakrlGkknviaETGAGQhGvatA~a~a~FGl~C~v~mgAe 205 (477)
T KOG1395|consen 127 RAKRLTEHCQTGARIYLKREDLN-HTGSHKINNAVAQALLAKRLGKKNVIAETGAGQHGVATATACAKFGLDCTVYMGAE 205 (477)
T ss_pred HHHHHHHHhCCCCEEEEEecCCC-ccccCCcccHHHHHHHHHHhcccceeeccCCCccchHHHHHHHHhCCceEEEechh
Confidence 46778899999999999999974 455433321 246788888888766677888999999999999999998888
Q ss_pred hHHHHHHHHHHHHH
Q psy10429 82 NFSMQAIDHIINSA 95 (207)
Q Consensus 82 ~~~~ra~dqi~~~~ 95 (207)
++=..|++-+|+.+
T Consensus 206 d~~rqalnvfrmrl 219 (477)
T KOG1395|consen 206 DYRRQALNVFRMRL 219 (477)
T ss_pred HHHHHHHHHHHHHH
Confidence 98888998887654
No 254
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=26.66 E-value=97 Score=27.03 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=26.4
Q ss_pred EEEeeCCHHHHHHHHHHHHcCCCcEEEEE
Q psy10429 141 KVVSPYNSEDAKGLLKAAIRDPDPVVFLE 169 (207)
Q Consensus 141 ~v~~P~~~~e~~~ll~~a~~~~~P~~i~~ 169 (207)
-++.|.|.+|+..++++|-+.+-|++++-
T Consensus 39 ~~v~p~~~edv~~~v~~a~~~~ip~~vlG 67 (307)
T PRK13906 39 FYITPTKNEEVQAVVKYAYQNEIPVTYLG 67 (307)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 57889999999999999999999999864
No 255
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=25.85 E-value=1.3e+02 Score=23.63 Aligned_cols=38 Identities=29% Similarity=0.459 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCccCCchhhchhhhhhcC
Q psy10429 6 ALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYG 46 (207)
Q Consensus 6 a~~~~L~~~~~~~~~vv~~~~D~~~~~g~~~~~~~l~~~~g 46 (207)
.+++.|.+.+ +-.+++++..|+| .|-+ .+++++.+.+|
T Consensus 13 ~lg~~l~~~l-~~g~Vv~L~GdLG-AGKT-tf~rgi~~~Lg 50 (149)
T COG0802 13 ALGERLAEAL-KAGDVVLLSGDLG-AGKT-TLVRGIAKGLG 50 (149)
T ss_pred HHHHHHHhhC-CCCCEEEEEcCCc-CChH-HHHHHHHHHcC
Confidence 3555555544 4678999999997 3433 45666666554
No 256
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=24.23 E-value=1.2e+02 Score=21.32 Aligned_cols=37 Identities=27% Similarity=0.333 Sum_probs=28.7
Q ss_pred CCcEEEeeC-CHHHHHHHHHHHHcCCCcEEEEECcccc
Q psy10429 138 PGLKVVSPY-NSEDAKGLLKAAIRDPDPVVFLENELLY 174 (207)
Q Consensus 138 Pgl~v~~P~-~~~e~~~ll~~a~~~~~P~~i~~~k~l~ 174 (207)
-|+..+... +++|+...++..+++++--+|..+..++
T Consensus 16 aGv~~~~~~~~~ee~~~~l~~l~~~~~~gIIii~e~~~ 53 (95)
T PF01990_consen 16 AGVEGVYVNTDPEEAEEALKELLKDEDVGIIIITEDLA 53 (95)
T ss_dssp TTSEEEEESHSHHHHHHHHHHHHHHTTEEEEEEEHHHH
T ss_pred cCCCCccCCCCHHHHHHHHHHHhcCCCccEEEeeHHHH
Confidence 488888888 9999999999999777766666555444
No 257
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=23.44 E-value=4.1e+02 Score=22.15 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=30.8
Q ss_pred HhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEEE
Q psy10429 130 FGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLE 169 (207)
Q Consensus 130 ~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~~ 169 (207)
.+.++..-++--|+.|.++......++.+.+.+-|+++..
T Consensus 50 i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~ 89 (303)
T cd01539 50 IDTALAKGVDLLAVNLVDPTAAQTVINKAKQKNIPVIFFN 89 (303)
T ss_pred HHHHHHcCCCEEEEecCchhhHHHHHHHHHHCCCCEEEeC
Confidence 3456666677778899998766788888877788998864
No 258
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=23.30 E-value=4.4e+02 Score=22.88 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=34.2
Q ss_pred HhHHHcCCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEEEC
Q psy10429 130 FGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLEN 170 (207)
Q Consensus 130 ~~a~~~~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~~~ 170 (207)
.+.+.+.=++-.++.|.|+......++.+.+..-|++..+.
T Consensus 73 i~~li~~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~ 113 (336)
T PRK15408 73 INNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDS 113 (336)
T ss_pred HHHHHHcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 44667777888888999999888999999998889998754
No 259
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=23.22 E-value=2.9e+02 Score=28.90 Aligned_cols=112 Identities=14% Similarity=0.066 Sum_probs=62.5
Q ss_pred CceeeccchhHHHHHHHHHHHhc-CCccEEEech-hhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCC
Q psy10429 48 KRVLDTPITEIGFAGIAVGAAMA-GLRPVCEFMT-FNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQ 125 (207)
Q Consensus 48 ~r~~~~gIaE~~~vg~A~GlA~~-G~~pi~~~~~-~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~h 125 (207)
.+..++-++=-+-++.+.|+|.. .-++++.... .+|..-++-.|++.++ ++.+++++.-+....+..+|
T Consensus 461 ~~~~~~~~~MG~~g~~~~G~a~~~~~~~v~a~iGDgTf~HSG~~al~~AV~---------~~~nit~~IL~N~~tAMTGg 531 (1159)
T PRK13030 461 DRDTTGLTQMGGEGVDWIGHAPFTETKHVFQNLGDGTYFHSGSLAIRQAVA---------AGANITYKILYNDAVAMTGG 531 (1159)
T ss_pred ccccceeeccCccchhhceeccccCCCCEEEEeccchhhhcCHHHHHHHHh---------cCCCeEEEEEeCCcccccCC
Confidence 34555555555556777787775 2355665553 2567778888997766 47777777654333332222
Q ss_pred C----chhHhH---HHcCC--CCcEEE--eeCC-----HH--------HHHHHHHHHH-cCCCcEEEE
Q psy10429 126 H----SQCFGA---WFTQC--PGLKVV--SPYN-----SE--------DAKGLLKAAI-RDPDPVVFL 168 (207)
Q Consensus 126 h----s~~~~a---~~~~i--Pgl~v~--~P~~-----~~--------e~~~ll~~a~-~~~~P~~i~ 168 (207)
| ..+.+. .++.+ ..+.|+ .|.+ -. +....++.++ +.+++.+|.
T Consensus 532 Qp~~g~i~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~~~~GvsViI 599 (1159)
T PRK13030 532 QPVDGSISVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELRETPGVTVLI 599 (1159)
T ss_pred CCCCCCCCHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHhcCCCcEEEE
Confidence 1 134445 44444 344444 3333 11 3344566666 668887764
No 260
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=21.37 E-value=1.3e+02 Score=28.62 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=29.1
Q ss_pred CCCCcEEEeeCCHHHHHHHHHHHHcCCCcEEEEEC
Q psy10429 136 QCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLEN 170 (207)
Q Consensus 136 ~iPgl~v~~P~~~~e~~~ll~~a~~~~~P~~i~~~ 170 (207)
..|. -|+.|.+.+|...+++.|-+.+-|++.|-.
T Consensus 132 ~~P~-~Vv~P~s~eeV~~ivk~a~~~~ipv~prGg 165 (555)
T PLN02805 132 NIPD-VVVFPRSEEEVSKIVKSCNKYKVPIVPYGG 165 (555)
T ss_pred CCCC-EEEEcCCHHHHHHHHHHHHHCCCcEEEECC
Confidence 3565 477899999999999999999999999754
No 261
>PRK12754 transketolase; Reviewed
Probab=21.33 E-value=7.7e+02 Score=24.06 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=37.8
Q ss_pred CccCC-EEEEeC-CCCCCCC--CCCCchhHhHHHcCCCCcEEEeeCCHHHH---HHHHHHHHc-CCCcEEEEEC
Q psy10429 105 TVNVP-IVFRGP-NGAASGV--AAQHSQCFGAWFTQCPGLKVVSPYNSEDA---KGLLKAAIR-DPDPVVFLEN 170 (207)
Q Consensus 105 ~~~~p-vvi~~~-~G~~~g~--~~hhs~~~~a~~~~iPgl~v~~P~~~~e~---~~ll~~a~~-~~~P~~i~~~ 170 (207)
..++| ++++.- ++....+ ....+.+....++.. |++++...|..|. ..+++.+.+ .++|++|.-.
T Consensus 172 ~~kL~nLi~ivD~N~~~idg~~~~~~~~~~~~r~~a~-Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~Pt~I~~~ 244 (663)
T PRK12754 172 TLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAY-GWHVIRGIDGHDADSIKRAVEEARAVTDKPSLLMCK 244 (663)
T ss_pred HhCCCCEEEEEEcCCCccCcchhhccCccHHHHHHhc-CCeEEeeECCCCHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 67898 444443 3444322 123344556777877 8988764355544 445555554 4889998654
No 262
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=21.16 E-value=1.5e+02 Score=25.73 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=25.7
Q ss_pred EEEeeCCHHHHHHHHHHHHcCCCcEEEEE
Q psy10429 141 KVVSPYNSEDAKGLLKAAIRDPDPVVFLE 169 (207)
Q Consensus 141 ~v~~P~~~~e~~~ll~~a~~~~~P~~i~~ 169 (207)
.++.|.+.+|+..+++++-+.+-|++++-
T Consensus 23 ~~v~p~~~~dl~~~l~~~~~~~ip~~vlG 51 (295)
T PRK14649 23 YFVEPTTPDEAIAAAAWAEQRQLPLFWLG 51 (295)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 46779999999999999999999999863
No 263
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=21.15 E-value=1.3e+02 Score=28.70 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=27.9
Q ss_pred cEEEeeCCHHHHHHHHHHHHcCCCcEEEEEC
Q psy10429 140 LKVVSPYNSEDAKGLLKAAIRDPDPVVFLEN 170 (207)
Q Consensus 140 l~v~~P~~~~e~~~ll~~a~~~~~P~~i~~~ 170 (207)
.-|+.|.+.+|...+++.|.+.+-|++.|-.
T Consensus 40 ~AVV~P~SteEVa~IVklC~e~~vPVIPRGg 70 (564)
T PRK11183 40 LAVVFPGTLLELWRVLQACVAADKIIIMQAA 70 (564)
T ss_pred CEEEecCCHHHHHHHHHHHHHcCCeEEEeCC
Confidence 3689999999999999999999999988744
No 264
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=20.83 E-value=1.5e+02 Score=26.62 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=25.9
Q ss_pred EEEeeCCHHHHHHHHHHHHcCCCcEEEEE
Q psy10429 141 KVVSPYNSEDAKGLLKAAIRDPDPVVFLE 169 (207)
Q Consensus 141 ~v~~P~~~~e~~~ll~~a~~~~~P~~i~~ 169 (207)
.++.|.|.+|+..+++++-+.+-|++++-
T Consensus 35 ~~~~p~s~edl~~~l~~a~~~~~p~~vlG 63 (363)
T PRK13903 35 RLVTCTSTEELVAAVRELDAAGEPLLVLG 63 (363)
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 46789999999999999999999999863
No 265
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=20.81 E-value=2.2e+02 Score=24.55 Aligned_cols=44 Identities=25% Similarity=0.399 Sum_probs=28.6
Q ss_pred CccCCEEEEeCCCCC-CCCCCCCch--hHhHHHcCCCCcEEEeeCCH
Q psy10429 105 TVNVPIVFRGPNGAA-SGVAAQHSQ--CFGAWFTQCPGLKVVSPYNS 148 (207)
Q Consensus 105 ~~~~pvvi~~~~G~~-~g~~~hhs~--~~~a~~~~iPgl~v~~P~~~ 148 (207)
...+||.|....+.. .+...+|+. ....+++..|+++|+.=--.
T Consensus 155 ~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~fP~l~IVl~H~G 201 (293)
T COG2159 155 ELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKFPELKIVLGHMG 201 (293)
T ss_pred HcCCCEEEEeCCCCCCcccccCCCCchHHHHHHHHCCCCcEEEEecC
Confidence 578999985433332 222222343 34689999999999986665
No 266
>PF10569 Thiol-ester_cl: Alpha-macro-globulin thiol-ester bond-forming region; InterPro: IPR019565 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ]. This short highly conserved region of proteinase-binding alpha-macro-globulins contains the cysteine and a glutamine of a thiol-ester bond that is cleaved at the moment of proteinase binding, and mediates the covalent binding of the alpha-macro-globulin to the proteinase. The GCGEQ motif is highly conserved. ; PDB: 2B39_B 2PN5_A 4ACQ_C 1HZF_A 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=20.62 E-value=70 Score=18.13 Aligned_cols=13 Identities=15% Similarity=-0.008 Sum_probs=10.2
Q ss_pred ccchhHHHHHHHH
Q psy10429 53 TPITEIGFAGIAV 65 (207)
Q Consensus 53 ~gIaE~~~vg~A~ 65 (207)
.|..||+|+.++-
T Consensus 10 ~GCgEQtm~~~~P 22 (31)
T PF10569_consen 10 YGCGEQTMSSFAP 22 (31)
T ss_dssp -SSTTHHHHHHHH
T ss_pred CCcHHHHHHHHhH
Confidence 7899999998764
No 267
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.17 E-value=4.4e+02 Score=24.03 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=40.4
Q ss_pred echhhHHHHHHHHHHHHHhhhhhhccCCccCCEEEEeCCCCCCCCCCCCchhHhHHHcCCCCcE-EEeeCCHHHHHHHHH
Q psy10429 78 FMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGAWFTQCPGLK-VVSPYNSEDAKGLLK 156 (207)
Q Consensus 78 ~~~~~~~~ra~dqi~~~~a~~~~~~~~~~~~pvvi~~~~G~~~g~~~hhs~~~~a~~~~iPgl~-v~~P~~~~e~~~ll~ 156 (207)
+-++.++..|-+..+..+..++..-....+..|++.|+ +-+...+.++..+|++. |+.+.+-.+...++.
T Consensus 45 iNTC~v~~~A~~~~~~~i~~~~~~k~~~p~~~ivv~GC---------~a~~~~~~~~~~~p~vd~vv~~~~~~~i~~l~~ 115 (446)
T PRK14337 45 VNTCSVRDKPEQKVYSLLGRIRHATKKNPDVFVAVGGC---------VAQQIGSGFFSRFPQVRLVFGTDGIAMAPQALE 115 (446)
T ss_pred EeccCeecHHHHHHHHHHHHHHHHHHhCCCCEEEEECC---------ccccccHHHHhhCCCCcEEECCCCHHHHHHHHH
Confidence 44555666666655555333321111112333443343 22233456788999997 555666666666776
Q ss_pred HHHcCCCc
Q psy10429 157 AAIRDPDP 164 (207)
Q Consensus 157 ~a~~~~~P 164 (207)
...+.+.|
T Consensus 116 ~~~~~~~~ 123 (446)
T PRK14337 116 RLAEEPDL 123 (446)
T ss_pred HHhcCCCc
Confidence 65544444
Done!