RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10429
(207 letters)
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 192
Score = 199 bits (507), Expect = 6e-66
Identities = 149/189 (78%), Positives = 169/189 (89%)
Query: 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGF 60
+TVRDA+N +DEE+ RDEKVFLLGEEVA YDGAYKVSRGLWKKYGDKR++DTPI+E+GF
Sbjct: 4 VTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGF 63
Query: 61 AGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS 120
AGIAVGAAMAGLRP+CEFMTFNFSMQAID +INSAAKT+YMS G VPIVFRGPNGA++
Sbjct: 64 AGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASA 123
Query: 121 GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPM 180
GVAAQHSQCF AW+ CPGLKVVSP+NSEDAKGL+K+AIRD +PVV LENEL+YGV +
Sbjct: 124 GVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEF 183
Query: 181 GDEALSKDF 189
EA SKDF
Sbjct: 184 PPEAQSKDF 192
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B),
Pyr module {Pseudomonas putida [TaxId: 303]}
Length = 204
Score = 184 bits (468), Expect = 6e-60
Identities = 78/200 (39%), Positives = 104/200 (52%), Gaps = 6/200 (3%)
Query: 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGF 60
MT+ AL SA+D + RD+ V + G++V + G ++ + GL KYG RV D PI+E G
Sbjct: 5 MTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGI 64
Query: 61 AGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS 120
G AVG GLRPV E ++ A D I++ A+ Y SAG P+ R P G
Sbjct: 65 VGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGI 124
Query: 121 GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQY-- 178
HSQ A FTQ GL+ V P N DAKGLL A+I DPV+FLE + LY +
Sbjct: 125 YGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDG 184
Query: 179 ----PMGDEALSKDFVLPIG 194
P+ + +P G
Sbjct: 185 HHDRPVTPWSKHPHSAVPDG 204
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB,
N-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 192
Score = 180 bits (458), Expect = 1e-58
Identities = 74/193 (38%), Positives = 102/193 (52%), Gaps = 3/193 (1%)
Query: 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGF 60
MT+ A+ AL E+ D V + GE+V + G ++ + GL ++G+ RV DTP+ E G
Sbjct: 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGI 62
Query: 61 AGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS 120
G+A+G A+ G RPV E F F + +D I A+ Y + G ++PI R P G
Sbjct: 63 GGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGV 122
Query: 121 GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYGVQYPM 180
HS Q PGLKVV P DAKGLL +AIRD DPV+FLE+ LY
Sbjct: 123 HTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLY---RSF 179
Query: 181 GDEALSKDFVLPI 193
E ++ +PI
Sbjct: 180 RQEVPEGEYTIPI 192
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate
dehydrogenase, Pyr module {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 191
Score = 167 bits (425), Expect = 1e-53
Identities = 80/174 (45%), Positives = 105/174 (60%)
Query: 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGF 60
+ A+N AL EEM RDE+V +LGE+V G + V+ GL++++G +RV+DTP+ E G
Sbjct: 8 ANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGI 67
Query: 61 AGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS 120
G A+G AMAGL+PV E +F D ++N AK Y S G P+V R P G+ +
Sbjct: 68 LGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGT 127
Query: 121 GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLY 174
HS A F PGL VV P +AKGLLKAAIR DPVVFLE ++LY
Sbjct: 128 RGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILY 181
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 203
Score = 166 bits (420), Expect = 1e-52
Identities = 66/176 (37%), Positives = 94/176 (53%), Gaps = 2/176 (1%)
Query: 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGF 60
M + ++ SALD +A+D + GE+VA + G ++ + GL KYG RV +TP+ E G
Sbjct: 20 MNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGI 78
Query: 61 AGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVF-RGPNGAA 119
G +G A+ G + E ++ A D I+N AAK Y S N + R P G
Sbjct: 79 VGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV 138
Query: 120 SGVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYG 175
A HSQ A+F CPG+KVV P + AKGLL + I D +P +F E ++LY
Sbjct: 139 GHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 194
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid
dehydrogenase, Pyr module {Thermus thermophilus [TaxId:
274]}
Length = 186
Score = 146 bits (369), Expect = 3e-45
Identities = 83/175 (47%), Positives = 104/175 (59%)
Query: 1 MTVRDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGF 60
MT+ ALN ALDEEMA+D +V +LGE+V G + V+ GL +KYG RV+DTP++E
Sbjct: 3 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAI 62
Query: 61 AGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAAS 120
G A+G A GLRPV E ++ D +++ AK Y S G P+V R P+G
Sbjct: 63 VGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGV 122
Query: 121 GVAAQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPDPVVFLENELLYG 175
HSQ A F GLKVV+ DAKGLLKAAIRD DPVVFLE + LY
Sbjct: 123 RGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYR 177
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module
{Escherichia coli [TaxId: 562]}
Length = 195
Score = 40.2 bits (93), Expect = 5e-05
Identities = 20/165 (12%), Positives = 41/165 (24%), Gaps = 7/165 (4%)
Query: 4 RDALNSALDEEMARDEKVFLLGEEVALYDGAYKVSRGLWKKYGDKRVLDTPITEIGFAGI 63
R A +A++ + ++A + + + + E G I
Sbjct: 26 RKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAI 85
Query: 64 AVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFYMSAGTVNVPIVFRGPNGAASGVA 123
A G ++ G F A + + + V + G
Sbjct: 86 ANGISLHGGFLPYTSTFLMFVEYARNAVRMA------ALMKQRQVMVYTHDSIGLGEDGP 139
Query: 124 AQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPD-PVVF 167
A P + P + ++ K + D P
Sbjct: 140 THQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTAL 184
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Bacillus subtilis [TaxId: 1423]}
Length = 204
Score = 27.1 bits (59), Expect = 1.3
Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 4/99 (4%)
Query: 39 RGLWKK-YGDKRVLDTPITEIGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAK 97
+G W +G+ + E+G + MA P ++ I +
Sbjct: 19 KGKWNTVFGNDNPI---HIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD 75
Query: 98 TFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGAWFTQ 136
+ + +N+ V + W +
Sbjct: 76 SEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKK 114
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid
dehydrogenase {Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 26.6 bits (58), Expect = 1.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 188 DFVLPIGKAKVEKQ 201
D+ LPIGKA + ++
Sbjct: 1 DYTLPIGKAALRRE 14
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate
dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum
[TaxId: 13773]}
Length = 135
Score = 26.7 bits (58), Expect = 1.5
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 188 DFVLPIGKAKVEKQ 201
D+V+ IGKA+V ++
Sbjct: 1 DYVVEIGKARVARE 14
>d1eysl_ f.26.1.1 (L:) L (light) subunit {Thermochromatium tepidum
[TaxId: 1050]}
Length = 280
Score = 26.6 bits (59), Expect = 2.0
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 58 IGFAGIAVGAAMAGLRPVCEFMTFNFSMQAIDHIINSAAKTFY 100
+G I GA + P + T+N +I S
Sbjct: 44 LGVLLIVWGATIGPTGPTSDLQTYNLWRISIAPPDLSYGLRMA 86
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 25.7 bits (56), Expect = 3.9
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 33 GAYKVSRGLWKKYGDKRVLD 52
GA V + L K+ G K +L
Sbjct: 1 GAVVV-KDLRKRIGKKEILK 19
>d1hl9a2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic
domain {Thermotoga maritima [TaxId: 2336]}
Length = 350
Score = 25.5 bits (55), Expect = 5.9
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 117 GAASGVA-AQHSQCFGAWFTQCPGLKVVSPYNSEDAKGLLKAAIRDPD 163
GA + +H F W T+ V D G L A+R+
Sbjct: 112 GAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPKRDLVGDLAKAVREAG 159
>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Vibrio harveyi [TaxId: 669]}
Length = 504
Score = 25.1 bits (53), Expect = 7.7
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 10/50 (20%)
Query: 92 INSAAKTFYMSAGTVNVPIVFRGPNGAASGVAAQHSQCFGAWFTQCPGLK 141
++ AG + NG +GV ++ G + P
Sbjct: 415 VSQLIPRLEEIAGRLVF-------NGWPTGVEVGYAMVHGGPY---PAST 454
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.403
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 771,795
Number of extensions: 34968
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 18
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)