BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1043
(1306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 230 bits (587), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 172/589 (29%), Positives = 292/589 (49%), Gaps = 47/589 (7%)
Query: 79 EYDFIXXXXXXXXXXXXNRLSEIENWKILLLEAGGDETDI--SDVPVLAAYLQLSGL-DW 135
++D++ RL+E + +L+LEAG + ++ ++ P+LA L + + DW
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 136 SYKTEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHWESL-GNPGWGA 194
+Y T T+ +PRG+++GGSS ++YM+ +RG+ D++ + ++ G+ GW
Sbjct: 62 NYTT----TAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 195 AEALYYFKKSE------DNRNQYLAETP-YHNSGGYLTVQEAPWHTPLAEAFVRGGEELG 247
+ +K+E DN N P H + G +++ + TPL + + +E
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQS 177
Query: 248 YE---NRDINGEYQTGFMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLID 304
E N D+ + G + +V NG R S+S A+L+P ++RPNL + +++ VTK++
Sbjct: 178 EEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNS 237
Query: 305 PKNRMAIGVEFVKNHQRH-----VIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGI 359
V+ ++ + A+KEV+LS G+V +P +L LSGIG ++ L+ +GI
Sbjct: 238 GTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGI 297
Query: 360 KTI-QDLKVGYNLQDHVGLGGFTFL-INQPI-SLVQDRLESVQSVLNYAMMGNGPLTVMG 416
TI + VG NL DH+ L F+ NQ ++ +D E + + GPLT +
Sbjct: 298 DTIVNNPSVGRNLSDHLLLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTALI 357
Query: 417 GDRLESVQSVLNYAMMGNGPLTVMGGVEGLAFVNTKYASDGGNQIRKAHGLREDFYDEVY 476
+ L ++ N ++ P G A T +++ + F+ +
Sbjct: 358 ANHLAWLRLPSNSSIFQTFPDPAAG--PNSAHWETIFSN-------------QWFHPAIP 402
Query: 477 GPINNKDVWSAIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIEGVKIILE 536
P + S L+ P +RG IKL + NP D P I P+Y S D+ T+I+ VK L
Sbjct: 403 RP-DTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLR 461
Query: 537 LSKTRSFRQYESRFHNIPFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDSE 596
+++ + R PF P DA E IR + TI+HPVGT M P S
Sbjct: 462 FLSGQAWADFVIR----PFDPRLRDPT-DDAAIESYIRDNANTIFHPVGTASMSPRGASW 516
Query: 597 AVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDMIKQD 645
VVDP L+V G+ LR++D SI+P + +T P+ ++G++G+D+IK D
Sbjct: 517 GVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIKAD 565
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 141/282 (50%), Gaps = 21/282 (7%)
Query: 702 EYDFXXXXXXXXXXXXXRRLSEQKNWKVLLLEAG-GEESPL-SDIPCTYPAL-QTSPLDW 758
++D+ RL+E + VL+LEAG +E+ L ++ P P L S DW
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 759 QYKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEAA-GNEGWSY 817
Y T A G NGR +PRG+++GGSS ++ M+ +RG+ D+D + A G+EGW++
Sbjct: 62 NYTTT----AQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 818 RDTLPYFIKSESV-------NISSLVDSPYHGTQGPLSVEEFRYYSPVTEAFVESAGELG 870
+ + K+E V N S HGT G +S+ + +P+ + + + E
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQS 177
Query: 871 YEV---GDINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFE 927
E D+ G + + ++ NG R S++ AYLRP +RPNL V +++ ++
Sbjct: 178 EEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNS 237
Query: 928 PGPDG--QMRATGVVVKKGRKDPVLVRARREVILSAGAIGSP 967
+G R ++G V A++EV+LSAG++G+P
Sbjct: 238 GTTNGLPAFRCVEYAEQEGAPT-TTVCAKKEVVLSAGSVGTP 278
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 1039 LLRPRSRGRIKLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKIGYAITRTKA-----MKR 1093
L+ P +RG IKL T++P D P+I P YL E D+ T+++ K +A ++
Sbjct: 416 LISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADFVIRP 475
Query: 1094 FNPVLHNVTIPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCKMGPDSDPGAVVDPXXXX 1153
F+P L + P DA E +R TI+HPVGT M P VVDP
Sbjct: 476 FDPRLRD----------PTDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKV 525
Query: 1154 XXXXXXXXIDASIMPTIVSGNTNAPTIMIAEKACDLIKED 1193
+D SI+P + +T P ++ ++ DLIK D
Sbjct: 526 KGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIKAD 565
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 215 bits (547), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 171/580 (29%), Positives = 263/580 (45%), Gaps = 80/580 (13%)
Query: 79 EYDFIXXXXXXXXXXXXNRLSEIENWKILLLEAGGDETDISDVPVLAAYLQL--SGLDWS 136
E+D+I RLSE + L+EAG D+ + +V L +++L SG DW
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 137 YKTEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHWES-LGNPGWGAA 195
Y EP M H R KV+GG S N + R D + WE+ G GW A
Sbjct: 73 YPIEPQENGNSFMRHARA-----KVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAE 127
Query: 196 EALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPLAEAFVRGGEELGYENRDING 255
A +K+ E N + + P+H G + + P P A + E+ G
Sbjct: 128 AAWPLYKRLETNEDAG-PDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPR----A 182
Query: 256 EYQTGFMVAQGT-------VRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNR 308
++ TG V G +G R S+S +++ P+ + N + +++ D +R
Sbjct: 183 KFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADR 241
Query: 309 MAIGVEFVKNH--QRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDLK 366
GV+ V + H + AR EV+LS GA+++P++LMLSGIGP HL + GI+ + D
Sbjct: 242 RCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSP 301
Query: 367 -VGYNLQDHVGLGGFTFLINQPISLVQDRLESVQSVLNYAMMGNGPLTVMGGDRLESVQS 425
VG +LQDH G F QP+ V + +G T G DR +
Sbjct: 302 GVGEHLQDHPE-GVVQFEAKQPM---------VAESTQWWEIGIFTPTEDGLDRPD---L 348
Query: 426 VLNYAMMGNGPLTVMGGVEGLAFVNTKYASDGGNQIRKAHGLREDFYDEVYGPINNKDVW 485
+++Y G+ P + N +R + E+ +
Sbjct: 349 MMHY---GSVPFDM-------------------NTLRHGYPTTENGF------------- 373
Query: 486 SAIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSD--HHDMLTLIEGVKIILELSKTRSF 543
S P + RSRG ++LRSR+ D P + P YF+D HDM ++ G++ E++ +
Sbjct: 374 SLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAM 433
Query: 544 RQYESRFHNIPFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDSEAVVDPRL 603
++ R + TD + IR T+YHPVGT +MG D + +DP L
Sbjct: 434 AEWTGR------ELSPGVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPEL 487
Query: 604 RVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDMIK 643
RV G+ LRV DAS+MP V+ N N V+MIGE+ +D+I+
Sbjct: 488 RVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIR 527
Score = 150 bits (379), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 147/535 (27%), Positives = 225/535 (42%), Gaps = 65/535 (12%)
Query: 702 EYDFXXXXXXXXXXXXXRRLSEQKNWKVLLLEAGGEESPLSDIPCT--YPALQTSPLDWQ 759
E+D+ RLSE V L+EAG ++ + ++ + L S DW
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 760 YKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEAA-GNEGWSYR 818
Y EP + + R+ KV+GG S N+ + R D D WEA G GW+
Sbjct: 73 YPIEPQENGNSFMRHARA-----KVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAE 127
Query: 819 DTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFRYYSPVTEAFVESAGELGYEVGDING 878
P + + E+ N + D+P+HG GP+ + P A +++ + G N
Sbjct: 128 AAWPLYKRLET-NEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFN- 185
Query: 879 ERQTGFTRAHGT-------LKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPD 931
TG T +G +G R S++ +Y+ PI+ + N + A ++ F D
Sbjct: 186 ---TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVF----D 238
Query: 932 GQMRATGV-VVKKGRKDPVLVRARREVILSAGAIGSPQVYLI----PNEH-----THYQV 981
R TGV +V + AR EV+LS GAI +P++ ++ P H V
Sbjct: 239 ADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLV 298
Query: 982 D-------LTDGPE----WPDIQLFFASAADNDDGGLFNKRNNGLKDD----YYAGV-FE 1025
D L D PE + Q A + + G+F +GL +Y V F+
Sbjct: 299 DSPGVGEHLQDHPEGVVQFEAKQPMVAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFD 358
Query: 1026 PILYR-------DSITLAPLLLRPRSRGRIKLRTADPLDHPMIRPNYLYDEK--DLKTLV 1076
R + +L P + RSRG ++LR+ D D PM+ P Y D + D++ +V
Sbjct: 359 MNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMV 418
Query: 1077 EGAKIGYAITRTKAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCK 1136
G + I AM + PG E T D + +R T+YHPVGT +
Sbjct: 419 AGIRKAREIAAQPAMAEWT---GRELSPGVEAQT---DEELQDYIRKTHNTVYHPVGTVR 472
Query: 1137 MGPDSDPGAVVDPXXXXXXXXXXXXIDASIMPTIVSGNTNAPTIMIAEKACDLIK 1191
MG D + +DP DAS+MP V+ N N +MI E+ DLI+
Sbjct: 473 MGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIR 527
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 215 bits (547), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 171/580 (29%), Positives = 263/580 (45%), Gaps = 80/580 (13%)
Query: 79 EYDFIXXXXXXXXXXXXNRLSEIENWKILLLEAGGDETDISDVPVLAAYLQL--SGLDWS 136
E+D+I RLSE + L+EAG D+ + +V L +++L SG DW
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 137 YKTEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHWES-LGNPGWGAA 195
Y EP M H R KV+GG S N + R D + WE+ G GW A
Sbjct: 73 YPIEPQENGNSFMRHARA-----KVMGGCSSHNACIAFWAPREDLDEWEAKYGATGWNAE 127
Query: 196 EALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPLAEAFVRGGEELGYENRDING 255
A +K+ E N + + P+H G + + P P A + E+ G
Sbjct: 128 AAWPLYKRLETNEDAG-PDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPR----A 182
Query: 256 EYQTGFMVAQGT-------VRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNR 308
++ TG V G +G R S+S +++ P+ + N + +++ D +R
Sbjct: 183 KFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADR 241
Query: 309 MAIGVEFVKNH--QRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDLK 366
GV+ V + H + AR EV+LS GA+++P++LMLSGIGP HL + GI+ + D
Sbjct: 242 RCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSP 301
Query: 367 -VGYNLQDHVGLGGFTFLINQPISLVQDRLESVQSVLNYAMMGNGPLTVMGGDRLESVQS 425
VG +LQDH G F QP+ V + +G T G DR +
Sbjct: 302 GVGEHLQDHPE-GVVQFEAKQPM---------VAESTQWWEIGIFTPTEDGLDRPD---L 348
Query: 426 VLNYAMMGNGPLTVMGGVEGLAFVNTKYASDGGNQIRKAHGLREDFYDEVYGPINNKDVW 485
+++Y G+ P + N +R + E+ +
Sbjct: 349 MMHY---GSVPFDM-------------------NTLRHGYPTTENGF------------- 373
Query: 486 SAIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSD--HHDMLTLIEGVKIILELSKTRSF 543
S P + RSRG ++LRSR+ D P + P YF+D HDM ++ G++ E++ +
Sbjct: 374 SLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAM 433
Query: 544 RQYESRFHNIPFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDSEAVVDPRL 603
++ R + TD + IR T+YHPVGT +MG D + +DP L
Sbjct: 434 AEWTGR------ELSPGVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPEL 487
Query: 604 RVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDMIK 643
RV G+ LRV DAS+MP V+ N N V+MIGE+ +D+I+
Sbjct: 488 RVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIR 527
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 148/535 (27%), Positives = 225/535 (42%), Gaps = 65/535 (12%)
Query: 702 EYDFXXXXXXXXXXXXXRRLSEQKNWKVLLLEAGGEESPLSDIPCT--YPALQTSPLDWQ 759
E+D+ RLSE V L+EAG ++ + ++ + L S DW
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 760 YKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEAA-GNEGWSYR 818
Y EP + + R+ KV+GG S NA + R D D WEA G GW+
Sbjct: 73 YPIEPQENGNSFMRHARA-----KVMGGCSSHNACIAFWAPREDLDEWEAKYGATGWNAE 127
Query: 819 DTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFRYYSPVTEAFVESAGELGYEVGDING 878
P + + E+ N + D+P+HG GP+ + P A +++ + G N
Sbjct: 128 AAWPLYKRLET-NEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFN- 185
Query: 879 ERQTGFTRAHGT-------LKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPD 931
TG T +G +G R S++ +Y+ PI+ + N + A ++ F D
Sbjct: 186 ---TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVF----D 238
Query: 932 GQMRATGV-VVKKGRKDPVLVRARREVILSAGAIGSPQVYLI----PNEH-----THYQV 981
R TGV +V + AR EV+LS GAI +P++ ++ P H V
Sbjct: 239 ADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLV 298
Query: 982 D-------LTDGPE----WPDIQLFFASAADNDDGGLFNKRNNGLKDD----YYAGV-FE 1025
D L D PE + Q A + + G+F +GL +Y V F+
Sbjct: 299 DSPGVGEHLQDHPEGVVQFEAKQPMVAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFD 358
Query: 1026 PILYR-------DSITLAPLLLRPRSRGRIKLRTADPLDHPMIRPNYLYDEK--DLKTLV 1076
R + +L P + RSRG ++LR+ D D PM+ P Y D + D++ +V
Sbjct: 359 MNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMV 418
Query: 1077 EGAKIGYAITRTKAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCK 1136
G + I AM + PG E T D + +R T+YHPVGT +
Sbjct: 419 AGIRKAREIAAQPAMAEWT---GRELSPGVEAQT---DEELQDYIRKTHNTVYHPVGTVR 472
Query: 1137 MGPDSDPGAVVDPXXXXXXXXXXXXIDASIMPTIVSGNTNAPTIMIAEKACDLIK 1191
MG D + +DP DAS+MP V+ N N +MI E+ DLI+
Sbjct: 473 MGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIR 527
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 213 bits (543), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 171/580 (29%), Positives = 262/580 (45%), Gaps = 80/580 (13%)
Query: 79 EYDFIXXXXXXXXXXXXNRLSEIENWKILLLEAGGDETDISDVPVLAAYLQL--SGLDWS 136
E+D+I RLSE + L+EAG D+ + +V L +++L SG DW
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 137 YKTEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHWES-LGNPGWGAA 195
Y EP M H R KV+GG S N + R D + WE+ G GW A
Sbjct: 73 YPIEPQENGNSFMRHARA-----KVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAE 127
Query: 196 EALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPLAEAFVRGGEELGYENRDING 255
A +K+ E N + + P+H G + + P P A + E+ G
Sbjct: 128 AAWPLYKRLETNEDAG-PDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPR----A 182
Query: 256 EYQTGFMVAQGT-------VRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNR 308
++ TG V G +G R S+S +++ P+ + N + +++ D +R
Sbjct: 183 KFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADR 241
Query: 309 MAIGVEFVKNH--QRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDLK 366
GV+ V + H + AR EV+LS GA+++P++LMLSGIGP HL + GI+ + D
Sbjct: 242 RCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSP 301
Query: 367 -VGYNLQDHVGLGGFTFLINQPISLVQDRLESVQSVLNYAMMGNGPLTVMGGDRLESVQS 425
VG +LQDH G F QP+ V + +G T G DR +
Sbjct: 302 GVGEHLQDHPE-GVVQFEAKQPM---------VAESTQWWEIGIFTPTEDGLDRPD---L 348
Query: 426 VLNYAMMGNGPLTVMGGVEGLAFVNTKYASDGGNQIRKAHGLREDFYDEVYGPINNKDVW 485
+++Y G+ P + N +R + E+ +
Sbjct: 349 MMHY---GSVPFDM-------------------NTLRHGYPTTENGF------------- 373
Query: 486 SAIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSD--HHDMLTLIEGVKIILELSKTRSF 543
S P + RSRG ++LRSR+ D P + P YF+D HDM ++ G++ E++ +
Sbjct: 374 SLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAM 433
Query: 544 RQYESRFHNIPFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDSEAVVDPRL 603
++ R + TD + IR T YHPVGT +MG D + +DP L
Sbjct: 434 AEWTGR------ELSPGVEAQTDEELQDYIRKTHNTAYHPVGTVRMGAVEDEMSPLDPEL 487
Query: 604 RVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDMIK 643
RV G+ LRV DAS+MP V+ N N V+MIGE+ +D+I+
Sbjct: 488 RVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIR 527
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 147/535 (27%), Positives = 224/535 (41%), Gaps = 65/535 (12%)
Query: 702 EYDFXXXXXXXXXXXXXRRLSEQKNWKVLLLEAGGEESPLSDIPCT--YPALQTSPLDWQ 759
E+D+ RLSE V L+EAG ++ + ++ + L S DW
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 760 YKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEAA-GNEGWSYR 818
Y EP + + R+ KV+GG S N+ + R D D WEA G GW+
Sbjct: 73 YPIEPQENGNSFMRHARA-----KVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAE 127
Query: 819 DTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFRYYSPVTEAFVESAGELGYEVGDING 878
P + + E+ N + D+P+HG GP+ + P A +++ + G N
Sbjct: 128 AAWPLYKRLET-NEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFN- 185
Query: 879 ERQTGFTRAHGT-------LKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPD 931
TG T +G +G R S++ +Y+ PI+ + N + A ++ F D
Sbjct: 186 ---TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVF----D 238
Query: 932 GQMRATGV-VVKKGRKDPVLVRARREVILSAGAIGSPQVYLI----PNEH-----THYQV 981
R TGV +V + AR EV+LS GAI +P++ ++ P H V
Sbjct: 239 ADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLV 298
Query: 982 D-------LTDGPE----WPDIQLFFASAADNDDGGLFNKRNNGLKDD----YYAGV-FE 1025
D L D PE + Q A + + G+F +GL +Y V F+
Sbjct: 299 DSPGVGEHLQDHPEGVVQFEAKQPMVAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFD 358
Query: 1026 PILYR-------DSITLAPLLLRPRSRGRIKLRTADPLDHPMIRPNYLYDEK--DLKTLV 1076
R + +L P + RSRG ++LR+ D D PM+ P Y D + D++ +V
Sbjct: 359 MNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMV 418
Query: 1077 EGAKIGYAITRTKAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCK 1136
G + I AM + PG E T D + +R T YHPVGT +
Sbjct: 419 AGIRKAREIAAQPAMAEWT---GRELSPGVEAQT---DEELQDYIRKTHNTAYHPVGTVR 472
Query: 1137 MGPDSDPGAVVDPXXXXXXXXXXXXIDASIMPTIVSGNTNAPTIMIAEKACDLIK 1191
MG D + +DP DAS+MP V+ N N +MI E+ DLI+
Sbjct: 473 MGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIR 527
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 181 bits (460), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 181/608 (29%), Positives = 279/608 (45%), Gaps = 80/608 (13%)
Query: 80 YDFIXXXXXXXXXXXXNRLSEIENWKILLLEAG-GDETDISDV--PVLAAYLQLSGLDWS 136
+DF+ RL+E N +L++EAG G+ DI ++ P A L+ S DW+
Sbjct: 7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66
Query: 137 YKTEPSSTSCLAMEHNRCNWP--RGKVVGGSSVLNYMLYVRGNRNDYNHWESLGNPGWGA 194
YKT T ++ R P RGK +GGSS LNY +V G++ ++ WE G W
Sbjct: 67 YKT----TMVRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTW 122
Query: 195 AEALYYFKKS---EDNRNQYLAETPYHNSGGYLTV-------QEAPWHTPLAEAFVRGGE 244
+ Y +KS D+ Y E GG + + + AP+ L +A+ G+
Sbjct: 123 DPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQ 182
Query: 245 ELGYENRDINGEYQTGFMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLID 304
L EN +GE G T+ G R S +FL VK +PN+ I H +++I+
Sbjct: 183 PL-IENI-YDGEMD-GLTHCCDTIYRGQR---SGSFLF-VKNKPNITIVPEVHSKRLIIN 235
Query: 305 PKNRMAIGVEFVKNHQRHV-IRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQ 363
+R GV V + A +EVILS G +P++LMLSGIGP L+ GI TI
Sbjct: 236 EADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIV 295
Query: 364 DLK-VGYNLQDHVGLGGFTFLINQPISL-VQDRLESVQSVLNYAMMGNGPLTVMGGDRLE 421
D + VG NL DH G+ P L V+D ++ ++ +GP + +
Sbjct: 296 DSRHVGQNLMDHPGV---------PFVLRVKDGFG-----MDDVLLRHGP-------KRD 334
Query: 422 SVQSVLN---YAMMGNGPLTVMGG------VEGLAFVNTKYASDGGNQIRKAHG---LRE 469
+V S N +G+G L ++G +E A A++GG G
Sbjct: 335 AVVSAYNKNRSGPVGSGLLELVGFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHFEL 394
Query: 470 DF-------YDEVYGPINNKDVWSAIPMLLRPRSR-GRIKLRSRNPLDYPRIQPEYFSDH 521
DF + + D + + L+RP S G + L S +P P I +F++
Sbjct: 395 DFVCMFGTAFQWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFAND 454
Query: 522 HDMLTLIEGVKIILE-LSKTRSFRQY-ESRFHNIPFPNCTHIPMYTDAYYECMIRHYSVT 579
D++ + EG++ + L K F+ ES + P+ +P+ +D + T
Sbjct: 455 LDIIAMREGIRFSYDLLFKGEGFKDLVESEY---PW----EMPLDSDKEMHRAVLDRCQT 507
Query: 580 IYHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGS 639
+HP GT ++ D + VVDP+L+VHGI LRV DAS++P I V +GEK +
Sbjct: 508 AFHPTGTARLSKNID-QGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCA 566
Query: 640 DMIKQDWR 647
DMIK + +
Sbjct: 567 DMIKAEHK 574
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 119/282 (42%), Gaps = 23/282 (8%)
Query: 703 YDFXXXXXXXXXXXXXRRLSEQKNWKVLLLEAG---GEESPLSDIPCTYPALQTSPLDWQ 759
+DF RL+E N VL++EAG E+ P P + L+ S DW
Sbjct: 7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66
Query: 760 YKTEPNDRACLGLNGRRSNWP--RGKVIGGSSVLNAMLYVRGNRRDYDAWEAAGNEGWSY 817
YKT R + R P RGK +GGSS LN +V G++ +D WE G + W++
Sbjct: 67 YKTTMVRRD----DYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTW 122
Query: 818 RDTLPYFIKSESVNISSLVDSPYH---GTQGPLSV---EEFRYYSPVTEAFVESAGELGY 871
+PY KS + + + SP G GP+ + E +P E ++ +G
Sbjct: 123 DPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQ 182
Query: 872 E-VGDINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGP 930
+ +I G T T+ G R + + +PN+ + H+ R+
Sbjct: 183 PLIENIYDGEMDGLTHCCDTIYRGQRSGS----FLFVKNKPNITIVPEVHSKRLIIN--- 235
Query: 931 DGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYLI 972
+ GV V + + A REVILS G +P++ ++
Sbjct: 236 EADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLML 277
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 9/165 (5%)
Query: 1031 DSITLAPLLLRPRSR-GRIKLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKIGYAIT-RT 1088
D +T+ L+RP S G + L +ADP P I N+ ++ D+ + EG + Y + +
Sbjct: 415 DHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFSYDLLFKG 474
Query: 1089 KAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCKMGPDSDPGAVVD 1148
+ K + +P SD V T +HP GT ++ + D G VVD
Sbjct: 475 EGFKDLVESEYPWEMPLD------SDKEMHRAVLDRCQTAFHPTGTARLSKNIDQG-VVD 527
Query: 1149 PXXXXXXXXXXXXIDASIMPTIVSGNTNAPTIMIAEKACDLIKED 1193
P DAS++P I + EK D+IK +
Sbjct: 528 PKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAE 572
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 160/575 (27%), Positives = 246/575 (42%), Gaps = 92/575 (16%)
Query: 78 PEYDFIXXXXXXXXXXXXNRLSEIENWKILLLEAGGDETDISDVPVLAAYLQLSG--LDW 135
P D + RLSE + ++LL+EAG + TD D+ AA+ L G DW
Sbjct: 16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTD-PDIWNPAAWPALQGRSYDW 74
Query: 136 SYKTEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHW-ESLGNPGWGA 194
Y+TE + + H W RG+++GGSS L+ M Y+RG+ +D+ W ++ G+ WG
Sbjct: 75 DYRTEAQAGTAGRAHH----WARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGW 130
Query: 195 AEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWH------TPLAEAFVRGGEELGY 248
E L F+ ED+ P G + P H +PLA AF+ G LG
Sbjct: 131 DELLPVFQAIEDH--------PLGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGL 182
Query: 249 ENRD-INGEYQTGFMVAQGTVRNGARCSTSKAFL-QPVKTRPNLHISLHSHVTKVLIDPK 306
+ N G +R+G R + + A+L + V+ R NL I S V ++ ++
Sbjct: 183 PRLEGHNSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGN 242
Query: 307 NRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDL- 365
++ E V + A +++L GA+ SP +LM SGIGP D L G+ + D+
Sbjct: 243 QVRSL--EVVGRQGSAEVFA-DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMP 299
Query: 366 KVGYNLQDHVGLGGFTFLINQPISLVQDRLESVQSVLNYAMMGNGPLTVMGGDRLESVQS 425
+G NLQDH+ G + +P+ RL+ +S + M D
Sbjct: 300 DIGRNLQDHLLGAGNLYAARKPVP--PSRLQHSES-----------MAYMRAD------- 339
Query: 426 VLNYAMMGNGPLTVMGGVEGLAFVNTKYASDGGNQIRKAHGLREDFYDEVYGPINNKDVW 485
++ G + V GV + + E F G +
Sbjct: 340 --SFTAAGQPEIVVGCGVAPI--------------------VSESFPAPAAG-----SAY 372
Query: 486 SAIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIEGVKIILELSKTRSFRQ 545
S + + P SRG +++ D I P Y D E + LE S+T R
Sbjct: 373 SLLFGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDR----ERFRRALEASRTIGHRD 428
Query: 546 YESRFHNIPF----PNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDSEAVVDP 601
+ + PN + A + I +T +HP GTC+MG D +AVVD
Sbjct: 429 ELAGWRERELLPGTPN-------SAAEMDDFIARSVITHHHPCGTCRMG--KDPDAVVDA 479
Query: 602 RLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGE 636
LR+ + NL V+DASIMP + +G +A V+ I E
Sbjct: 480 NLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAE 514
Score = 146 bits (369), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 148/532 (27%), Positives = 227/532 (42%), Gaps = 75/532 (14%)
Query: 698 EMYPEYDFXXXXXXXXXXXXXRRLSEQKNWKVLLLEAGGEESPLSDI--PCTYPALQTSP 755
E P D RLSE + +VLL+EAG EE DI P +PALQ
Sbjct: 13 EHAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAG-EEPTDPDIWNPAAWPALQGRS 71
Query: 756 LDWQYKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAW-EAAGNEG 814
DW Y+TE A G GR +W RG++IGGSS L+AM Y+RG+ D+ AW +A+G+
Sbjct: 72 YDWDYRTE----AQAGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRR 127
Query: 815 WSYRDTLPYFIKSESVNISSLVDSPYHGTQGPLSVE-EFRYYSPVTEAFVESAGELGY-E 872
W + + LP F +++ L HG GPL + SP+ AF+E+ LG
Sbjct: 128 WGWDELLPVF---QAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPR 184
Query: 873 VGDINGERQTGFTRAHGTLKNGLRCSTAKAYL-RPIIARPNLHVSLHSHAYRVHFEPGPD 931
+ N G T +++G R + A A+L + + R NL + S R+ E
Sbjct: 185 LEGHNSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE---G 241
Query: 932 GQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYLIPNEHTHYQVD------LTD 985
Q+R+ VV ++G + +++L AGA+ SP + + H +D L D
Sbjct: 242 NQVRSLEVVGRQGSAEVFA----DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLID 297
Query: 986 GPEWP-DIQLFFASAADNDDGGLFNKRN-------------NGLKDDYYAGVFEPILYRD 1031
P+ ++Q A G L+ R ++ D + +P +
Sbjct: 298 MPDIGRNLQDHLLGA-----GNLYAARKPVPPSRLQHSESMAYMRADSFTAAGQPEIVV- 351
Query: 1032 SITLAPL-------------------LLRPRSRGRIKLRTADPLDHPMIRPNYLYDEKDL 1072
+AP+ + P SRG +++ + D +I P YL +D
Sbjct: 352 GCGVAPIVSESFPAPAAGSAYSLLFGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDR 411
Query: 1073 KTLVEGAKIGYAITRTKAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQVRHYTMTIYHPV 1132
+ + I + + +PG TP S A + + +T +HP
Sbjct: 412 ERFRRALEASRTIGHRDELAGWR---ERELLPG----TPNSAAEMDDFIARSVITHHHPC 464
Query: 1133 GTCKMGPDSDPGAVVDPXXXXXXXXXXXXIDASIMPTIVSGNTNAPTIMIAE 1184
GTC+MG DP AVVD +DASIMP + +G +A + IAE
Sbjct: 465 GTCRMG--KDPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAE 514
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 162/591 (27%), Positives = 254/591 (42%), Gaps = 57/591 (9%)
Query: 81 DFIXXXXXXXXXXXXNRLSEIENWKILLLEAGGDETD----ISDVPVLAAYLQLSG--LD 134
D+I RL+E N +L++E+G E+D I D L AY + G +D
Sbjct: 21 DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIED---LNAYGDIFGSSVD 77
Query: 135 WSYKTEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHWESL-GNPGWG 193
+Y+T LA + G +GGS+++N + R ++ + WE++ GN GW
Sbjct: 78 HAYETVE-----LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWN 132
Query: 194 AAEALYYFKKSEDNRN---QYLAETPYHNS---GGYLTVQEAPWHT-----PLAEAFVRG 242
Y ++E R + +A Y N+ G TV P T P+ +A +
Sbjct: 133 WDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSA 192
Query: 243 GEELGY-ENRDINGEYQTGFMVAQGTVR-NGARCSTSKAFLQPVKTRPNLHISLHSHVTK 300
E+ G +D G + T+ + R ++ +L P RPNL + +V K
Sbjct: 193 VEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGK 252
Query: 301 VLIDPKNRM--AIGVEF-VKNHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDM 357
VL+ A+GVEF H + A+ EV+L+ G+ SP IL SGIG K L +
Sbjct: 253 VLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPL 312
Query: 358 GIKTIQDLKVGYNLQDHVGLGGFTFLINQPISLVQDRLESVQSVLNYAMMGNGPLTVMGG 417
GI T+ DL VG NLQD Q + V+ R+ S + A G
Sbjct: 313 GIDTVVDLPVGLNLQD------------QTTATVRSRITSAGAGQGQAAW-FATFNETFG 359
Query: 418 DRLESVQSVLNYAMMGNGPLTVM-GGVEGLAFVNTKYASDGGNQIRKAHGLREDFYDEVY 476
D E +LN + V GG + +Y + + E F D
Sbjct: 360 DYSEKAHELLNTKLEQWAEEAVARGGFHNTTALLIQYENYRDWIVNHNVAYSELFLDTA- 418
Query: 477 GPINNKDVWSAIPMLLRPRSRGRIKLRSRNP-LDYPRIQPEYFSDHHDMLTLIEGVKIIL 535
+ + DVW +P +RG + + ++P L + P+YF + D+L ++
Sbjct: 419 -GVASFDVWDLLPF-----TRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLAR 472
Query: 536 ELSKTRSFRQYESRFHNIPFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDS 595
+S + + + Y + IP N + + A+ E + H+ YH VGTC M P+ +
Sbjct: 473 NISNSGAMQTYFAG-ETIPGDNLAYDADLS-AWTEYIPYHFRPN-YHGVGTCSMMPK-EM 528
Query: 596 EAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDMIKQDW 646
VVD RV+G+ LRVID SI PT +S + + K SD I +D+
Sbjct: 529 GGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDY 579
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 124/273 (45%), Gaps = 35/273 (12%)
Query: 720 RLSEQKNWKVLLLEAGGEES---PLSDIPCTYPALQTSPLDWQYKTEPNDRACLGLNGRR 776
RL+E N VL++E+G ES P+ + Y + S +D Y+T L N +
Sbjct: 37 RLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYET-----VELATNNQT 91
Query: 777 SNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEAA-GNEGWSYRDTLPYFIKSE------- 828
+ G +GGS+++N + R ++ D+WE GNEGW++ + Y +++E
Sbjct: 92 ALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNA 151
Query: 829 -SVNISSLVDSPYHGTQGPLSV---EEFRYYSPVTEAFVESAGELGYEVGDINGERQTGF 884
+ ++ HG G + + YSP+ +A + + + G + ++ G
Sbjct: 152 KQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRG-----VPTKKDFGC 206
Query: 885 TRAHG------TL-KNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQM-RA 936
HG TL ++ +R A+ +L P RPNL V + +V +G RA
Sbjct: 207 GDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLS--QNGTTPRA 264
Query: 937 TGVVVKKGRKDPVLVRARREVILSAGAIGSPQV 969
GV + + V A+ EV+L+AG+ SP +
Sbjct: 265 VGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTI 297
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 67/160 (41%), Gaps = 5/160 (3%)
Query: 1040 LRPRSRGRIKLRTADP-LDHPMIRPNYLYDEKDLKTLVEGAKIGYAITRTKAMKRFNPVL 1098
L P +RG + + DP L H P Y +E DL ++ I+ + AM+ +
Sbjct: 428 LLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTY---F 484
Query: 1099 HNVTIPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCKMGPDSDPGAVVDPXXXXXXXXX 1158
TIPG + W + ++ YH VGTC M P + G VVD
Sbjct: 485 AGETIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMP-KEMGGVVDNAARVYGVQG 543
Query: 1159 XXXIDASIMPTIVSGNTNAPTIMIAEKACDLIKEDWGVME 1198
ID SI PT +S + +A K D I ED+ M+
Sbjct: 544 LRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYASMQ 583
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 157/593 (26%), Positives = 246/593 (41%), Gaps = 56/593 (9%)
Query: 80 YDFIXXXXXXXXXXXXNRLSEIENWKILLLEAGGDET-DISDVPVLAAYLQLSG--LDWS 136
YD+I +L+E K+L++E G E+ D + + AY Q+ G +D +
Sbjct: 25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQN 84
Query: 137 YKTEPSSTSCLAMEHNRCNWPR-GKVVGGSSVLNYMLYVRGNRNDYNHWESL-GNPGWGA 194
Y T P + +NR N + GK +GGS+++N + R ++ + WE + G GW
Sbjct: 85 YLTVP-------LINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNW 137
Query: 195 AEALYYFKKSEDNRNQYLAETPYHNS------GGYLTVQEA------PWHTPLAEAFVRG 242
Y KK+E R A+ +S G TVQ PW +P+ +A +
Sbjct: 138 DNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPW-SPIMKALMNT 196
Query: 243 GEELGY--ENRDINGEYQTGFMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTK 300
LG + + G + M+ N R ++A+L P R NL I V K
Sbjct: 197 VSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGK 256
Query: 301 VLIDPKNR--MAIGVEFVKNHQRHV-IRARKEVILSGGAVNSPQILMLSGIGPKDHLTDM 357
VL A+GV F N + + A+ EV+L+ G+ SP IL SGIG K L
Sbjct: 257 VLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQA 316
Query: 358 GIKTIQDLKVGYNLQDHVGLGGFTFLINQPISLVQDRLESVQSVLNYAMMGNGPLTVMGG 417
+ + DL VG N+QD Q + V R S + A+ T G
Sbjct: 317 NVTQLLDLPVGINMQD------------QTTTTVSSRASSAGAGQGQAVF-FANFTETFG 363
Query: 418 DRLESVQSVLNYAMMGNGPLTVM-GGVEGLAFVNTKYASDGGNQIRKAHGLREDFYDEVY 476
D + +LN + TV GG + + +Y + + + E F D
Sbjct: 364 DYAPQARDLLNTKLDQWAEETVARGGFHNVTALKVQYENYRNWLLDEDVAFAELFMD-TE 422
Query: 477 GPINNKDVWSAIPMLLRPRSRGRIKLRSRNPLDYPRIQ-PEYFSDHHDMLTLIEGVKIIL 535
G I N D+W IP +RG + + S +P + P++F + D+L K+
Sbjct: 423 GKI-NFDLWDLIPF-----TRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLAR 476
Query: 536 ELSKTRSFRQYESRFHNIPFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDS 595
+L+ + ++Y F P + T + + + +H V +C M +
Sbjct: 477 DLTSQGAMKEY---FAGETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMSR-EL 532
Query: 596 EAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDMIKQDWRK 648
VVD +V+G LRVID SI PT VS + + K +D I D+ K
Sbjct: 533 GGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYAK 585
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 126/284 (44%), Gaps = 24/284 (8%)
Query: 703 YDFXXXXXXXXXXXXXRRLSEQKNWKVLLLEAGGEES---PLSDIPCTYPALQTSPLDWQ 759
YD+ +L+E KVL++E G ES + + P Y + + +D
Sbjct: 25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQN 84
Query: 760 YKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEAA-GNEGWSYR 818
Y T P +N R +N GK +GGS+++N + R ++ D+WE G EGW++
Sbjct: 85 YLTVPL------INNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWD 138
Query: 819 DTLPYFIKSESVNISSLV--------DSPYHGTQGPL---SVEEFRYYSPVTEAFVESAG 867
+ Y K+E+ + ++ HGT G + + + + +SP+ +A + +
Sbjct: 139 NMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVS 198
Query: 868 ELGYEV-GDINGERQTGFTRAHGTL-KNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVH 925
LG V D G + L +N +R A+A+L P R NL + +V
Sbjct: 199 ALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVL 258
Query: 926 FEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQV 969
F+ G +A GV + V A+ EV+L+AG+ SP +
Sbjct: 259 FKQTASGP-QAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLI 301
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 144/599 (24%), Positives = 227/599 (37%), Gaps = 103/599 (17%)
Query: 80 YDFIXXXXXXXXXXXXNRLSEIENWKILLLEAGGDETDISDVPVLAAYLQLSGLDWSYKT 139
YD+I +RLSE K+LLLE GG T + +A + SGL +
Sbjct: 3 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGL--TKFD 59
Query: 140 EPSSTSCLAMEHNRCNWPR------GKVVGGSSVLNYMLYVRGNRNDYNHWESLGNPGWG 193
P L + N W + G +VGG + +N LY N D++ S+G P
Sbjct: 60 IPGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS--SSVGWPSSW 117
Query: 194 AAEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPLAEAFVRGGEELGYENRDI 253
A Y K S L T + ++ G ++++ + ++G GY I
Sbjct: 118 TNHAPYTSKLSSR-----LPSTDHPSTDGQRYLEQS---FNVVSQLLKG---QGYNQATI 166
Query: 254 NGE--YQTG-FMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNRMA 310
N Y+ F + NG R +LQ RPN + V+ V+ + +
Sbjct: 167 NDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQILG 226
Query: 311 IGVE--FVKNHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQ----- 363
+ + + + + VILS GA + +IL SGIGP TDM I+T+Q
Sbjct: 227 VQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGP----TDM-IQTVQSNPTA 281
Query: 364 -----------DLKVGYNLQDHVGLGGFTFLINQPISLVQDRLESVQSVLNYAMMGNGPL 412
+L VG N QD N I+LV S+ + N+A + + P
Sbjct: 282 AAALPPQNQWINLPVGMNAQD-----------NPSINLVFTH-PSIDAYENWADVWSNPR 329
Query: 413 TVMGGDRLESVQSVLNYAMMGNGPLTVMGGVEGLAFVNTKYASDGGNQIRKAHGLREDFY 472
L + V G L F SDG R A G
Sbjct: 330 PADAAQYLANQSGVF------------AGASPKLNFWRAYSGSDG--FTRYAQGTVRPGA 375
Query: 473 DEVYG--PINNKDVWS-AIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIE 529
V P N +++ + + +SRGRI + + L + P + + D L++
Sbjct: 376 ASVNSSLPYNASQIFTITVYLSTGIQSRGRIGIDAA--LRGTVLTPPWLVNPVDKTVLLQ 433
Query: 530 GVKIILELSKTRSFRQYESRFHNIP-----FPNCTH-IPMYTDAYYECMIRHYSVTIYHP 583
+ ++ S +IP P+ T + Y DAY + H
Sbjct: 434 ALHDVV------------SNIGSIPGLTMITPDVTQTLEEYVDAYDPATMNS-----NHW 476
Query: 584 VGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDMI 642
V + +G S AVVD ++V G NL ++DA I+P + +GN ++ E+ + I
Sbjct: 477 VSSTTIGSSPQS-AVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKI 534
Score = 37.4 bits (85), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 102/300 (34%), Gaps = 71/300 (23%)
Query: 703 YDFXXXXXXXXXXXXXRRLSEQKNWKVLLLEAGGEESPLS-----------------DIP 745
YD+ RLSE KVLLLE GG + + DIP
Sbjct: 3 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIP 61
Query: 746 CTYPALQT--SPLDWQYKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRD 803
+ +L T +P W K CL +GG + +N LY N D
Sbjct: 62 GLFESLFTDSNPF-WWCKDITVFAGCL--------------VGGGTSVNGALYWYPNDGD 106
Query: 804 YDAWEAAGNEGW--SYRDTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFRYYSPVTEA 861
+ + + GW S+ + PY K +SS + S H S + RY
Sbjct: 107 FSS-----SVGWPSSWTNHAPYTSK-----LSSRLPSTDH-----PSTDGQRYLEQSFNV 151
Query: 862 FVESAGELGYEVGDINGE---RQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLH 918
+ GY IN + F + NG R YL+ +ARPN +
Sbjct: 152 VSQLLKGQGYNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTN 211
Query: 919 SHAYRVHFEPGPDGQMRATGVVVKKGRKDPVL-------VRARREVILSAGAIGSPQVYL 971
V +R ++ DP L V + VILSAGA G+ ++
Sbjct: 212 VMVSNV---------VRNGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILF 262
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 22/152 (14%)
Query: 1043 RSRGRIKLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKIGYAITRTKAMKRFNPVLHNV- 1101
+SRGRI + A L ++ P +L + D +T ++ + V+ N+
Sbjct: 401 QSRGRIGIDAA--LRGTVLTPPWLVNPVD---------------KTVLLQALHDVVSNIG 443
Query: 1102 TIPGCEHTTPLSDAYWECQVRHY---TMTIYHPVGTCKMGPDSDPGAVVDPXXXXXXXXX 1158
+IPG TP E V Y TM H V + +G S AVVD
Sbjct: 444 SIPGLTMITPDVTQTLEEYVDAYDPATMNSNHWVSSTTIG-SSPQSAVVDSNVKVFGTNN 502
Query: 1159 XXXIDASIMPTIVSGNTNAPTIMIAEKACDLI 1190
+DA I+P + +GN + AE+A I
Sbjct: 503 LFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKI 534
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 144/599 (24%), Positives = 227/599 (37%), Gaps = 103/599 (17%)
Query: 80 YDFIXXXXXXXXXXXXNRLSEIENWKILLLEAGGDETDISDVPVLAAYLQLSGLDWSYKT 139
YD+I +RLSE K+LLLE GG T + +A + SGL +
Sbjct: 8 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGL--TKFD 64
Query: 140 EPSSTSCLAMEHNRCNWPR------GKVVGGSSVLNYMLYVRGNRNDYNHWESLGNPGWG 193
P L + N W + G +VGG + +N LY N D++ S+G P
Sbjct: 65 IPGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS--SSVGWPSSW 122
Query: 194 AAEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPLAEAFVRGGEELGYENRDI 253
A Y K S L T + ++ G ++++ + ++G GY I
Sbjct: 123 TNHAPYTSKLSSR-----LPSTDHPSTDGQRYLEQS---FNVVSQLLKG---QGYNQATI 171
Query: 254 NGE--YQTG-FMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNRMA 310
N Y+ F + NG R +LQ RPN + V+ V+ + +
Sbjct: 172 NDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQILG 231
Query: 311 IGVE--FVKNHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQ----- 363
+ + + + + VILS GA + +IL SGIGP TDM I+T+Q
Sbjct: 232 VQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGP----TDM-IQTVQSNPTA 286
Query: 364 -----------DLKVGYNLQDHVGLGGFTFLINQPISLVQDRLESVQSVLNYAMMGNGPL 412
+L VG N QD N I+LV S+ + N+A + + P
Sbjct: 287 AAALPPQNQWINLPVGMNAQD-----------NPSINLVFTH-PSIDAYENWADVWSNPR 334
Query: 413 TVMGGDRLESVQSVLNYAMMGNGPLTVMGGVEGLAFVNTKYASDGGNQIRKAHGLREDFY 472
L + V G L F SDG R A G
Sbjct: 335 PADAAQYLANQSGVF------------AGASPKLNFWRAYSGSDG--FTRYAQGTVRPGA 380
Query: 473 DEVYG--PINNKDVWS-AIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIE 529
V P N +++ + + +SRGRI + + L + P + + D L++
Sbjct: 381 ASVNSSLPYNASQIFTITVYLSTGIQSRGRIGIDAA--LRGTVLTPPWLVNPVDKTVLLQ 438
Query: 530 GVKIILELSKTRSFRQYESRFHNIP-----FPNCTH-IPMYTDAYYECMIRHYSVTIYHP 583
+ ++ S +IP P+ T + Y DAY + H
Sbjct: 439 ALHDVV------------SNIGSIPGLTMITPDVTQTLEEYVDAYDPATMNS-----NHW 481
Query: 584 VGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDMI 642
V + +G S AVVD ++V G NL ++DA I+P + +GN ++ E+ + I
Sbjct: 482 VSSTTIGSSPQS-AVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKI 539
Score = 37.0 bits (84), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 22/152 (14%)
Query: 1043 RSRGRIKLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKIGYAITRTKAMKRFNPVLHNV- 1101
+SRGRI + A L ++ P +L + D +T ++ + V+ N+
Sbjct: 406 QSRGRIGIDAA--LRGTVLTPPWLVNPVD---------------KTVLLQALHDVVSNIG 448
Query: 1102 TIPGCEHTTPLSDAYWECQVRHY---TMTIYHPVGTCKMGPDSDPGAVVDPXXXXXXXXX 1158
+IPG TP E V Y TM H V + +G S AVVD
Sbjct: 449 SIPGLTMITPDVTQTLEEYVDAYDPATMNSNHWVSSTTIG-SSPQSAVVDSNVKVFGTNN 507
Query: 1159 XXXIDASIMPTIVSGNTNAPTIMIAEKACDLI 1190
+DA I+P + +GN + AE+A I
Sbjct: 508 LFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKI 539
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 102/300 (34%), Gaps = 71/300 (23%)
Query: 703 YDFXXXXXXXXXXXXXRRLSEQKNWKVLLLEAGGEESPLS-----------------DIP 745
YD+ RLSE KVLLLE GG + + DIP
Sbjct: 8 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIP 66
Query: 746 CTYPALQT--SPLDWQYKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRD 803
+ +L T +P W K CL +GG + +N LY N D
Sbjct: 67 GLFESLFTDSNPF-WWCKDITVFAGCL--------------VGGGTSVNGALYWYPNDGD 111
Query: 804 YDAWEAAGNEGW--SYRDTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFRYYSPVTEA 861
+ + + GW S+ + PY K +SS + S H S + RY
Sbjct: 112 FSS-----SVGWPSSWTNHAPYTSK-----LSSRLPSTDH-----PSTDGQRYLEQSFNV 156
Query: 862 FVESAGELGYEVGDINGE---RQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLH 918
+ GY IN + F + NG R YL+ +ARPN +
Sbjct: 157 VSQLLKGQGYNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTN 216
Query: 919 SHAYRVHFEPGPDGQMRATGVVVKKGRKDPVL-------VRARREVILSAGAIGSPQVYL 971
V +R ++ DP L V + VILSAGA G+ ++
Sbjct: 217 VMVSNV---------VRNGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILF 267
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 117/267 (43%), Gaps = 34/267 (12%)
Query: 102 ENWKILLLEAGGDETDISDVPVLAAYLQLSGLDWSYKTEPSSTSCLA--MEHNRCNWPRG 159
E +K+L+LE G T +V L G ++ + E + + + + + RG
Sbjct: 47 EKYKVLVLERGSLPTAYPNV------LTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRG 100
Query: 160 KVVGGSSVLNYMLYVRGNRNDYNHWESLGNPGWGAAEALYYFKKSEDNRNQYLAETPYHN 219
+V+GG+S++N +Y R N + Y S W ++ ED + P
Sbjct: 101 RVLGGTSIINAGVYARANTSIY----SASGVDWDMDLVNQTYEWVEDT----IVYKPNSQ 152
Query: 220 SGGYLTVQEAPWHTPLAEAFVRGGEELGYENRDINGEYQTGFMVAQGTVRNGARCSTSKA 279
S W + AF+ G + N + +++ G + T N +
Sbjct: 153 S----------WQSVTKTAFLEAGV---HPNHGFSLDHEEGTRITGSTFDNKGTRHAADE 199
Query: 280 FLQPVKTRPNLHISLHSHVTKVLI-DPKNRMAIGVEFVKNH---QRHVIRARKEVILSGG 335
L + NL + +H+ V K++ + A GV + ++ + +R++ EVI+S G
Sbjct: 200 LLNKGNSN-NLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAG 258
Query: 336 AVNSPQILMLSGIGPKDHLTDMGIKTI 362
+ +PQ+L+LSG+GP+ +L+ + I +
Sbjct: 259 TIGTPQLLLLSGVGPESYLSSLNIPVV 285
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 119/502 (23%), Positives = 184/502 (36%), Gaps = 117/502 (23%)
Query: 698 EMYPEYDFXXXXXXXXXXXXXRRLSEQKNWKVLLLEAGGEESPLSDIPCTYPALQTSPLD 757
E+ YD+ LSE+ +KVL+LE G +P YP + T+
Sbjct: 22 ELEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERG-------SLPTAYPNVLTAD-G 71
Query: 758 WQYKTEPNDRACLGLNGRRS----NWPRGKVIGGSSVLNAMLYVRGNRRDYDA----WEA 809
+ Y + D + S + RG+V+GG+S++NA +Y R N Y A W+
Sbjct: 72 FVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDM 131
Query: 810 -AGNEGWSY-RDTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFRYYSPVTEAFVESAG 867
N+ + + DT+ Y S+S + S AF+E+
Sbjct: 132 DLVNQTYEWVEDTIVYKPNSQS------------------------WQSVTKTAFLEAGV 167
Query: 868 E--LGYEVGDINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVH 925
G+ + G R TG T N A L + NL V +H+ ++
Sbjct: 168 HPNHGFSLDHEEGTRITG-----STFDNKGTRHAADELLNKGNSN-NLRVGVHASVEKII 221
Query: 926 FEPGPDGQMRATGVVVKKGRKDP--VLVRARREVILSAGAIGSPQVYLIPNEHTHYQVDL 983
F P + ATGV+ + P VR++ EVI+SAG IG+PQ+ L+
Sbjct: 222 FSNAPG--LTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGV-------- 271
Query: 984 TDGPEWPDIQLFFASAADNDDGGLF---NKRNN-----------------GLKDDYYAGV 1023
GPE L + G F N RN G+ +D+Y
Sbjct: 272 --GPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISNDFYQCS 329
Query: 1024 FE-----------------PILYRDSITLAPLLLRPRSRGRIKLRTADPLD-HPMIRPNY 1065
F P+ A + P S G + L+++ + P ++ NY
Sbjct: 330 FSSLPFTTPPFGFFPSSSYPLPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNY 389
Query: 1066 LYDEKDLKTLVEGAKIGYAITRTKAMKRFN----PVLHNVTIPGCEHTTPL-----SDAY 1116
+ DL V G K + T A+K + P + I G PL DA
Sbjct: 390 YSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGI----PLPKDQTDDAA 445
Query: 1117 WECQVRHYTMTIYHPVGTCKMG 1138
+E R + +H G C +G
Sbjct: 446 FETFCRESVASYWHYHGGCLVG 467
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 12/171 (7%)
Query: 471 FYDEVYGPINNKDVWSAIPMLLRPRSRGRIKLRSRNPLDY-PRIQPEYFSDHHDMLTLIE 529
F+ P+ N + P S G + L+S + + P ++ Y+S+ D+ +
Sbjct: 342 FFPSSSYPLPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVS 401
Query: 530 GVKIILELSKTRSFRQYESR-FHNIPFPNCTHIPM----YTDAYYECMIRHYSVTIYHPV 584
G+K I EL T + + Y+ + N IP+ DA +E R + +H
Sbjct: 402 GMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYH 461
Query: 585 GTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIG 635
G C +G V+D RV GI LRV+D S P + + +M+G
Sbjct: 462 GGCLVG------KVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLG 506
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 117/267 (43%), Gaps = 34/267 (12%)
Query: 102 ENWKILLLEAGGDETDISDVPVLAAYLQLSGLDWSYKTEPSSTSCLA--MEHNRCNWPRG 159
E +K+L+LE G T +V L G ++ + E + + + + + RG
Sbjct: 47 EKYKVLVLERGSLPTAYPNV------LTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRG 100
Query: 160 KVVGGSSVLNYMLYVRGNRNDYNHWESLGNPGWGAAEALYYFKKSEDNRNQYLAETPYHN 219
+V+GG+S++N +Y R N + Y S W ++ ED + P
Sbjct: 101 RVLGGTSIINAGVYARANTSIY----SASGVDWDMDLVNQTYEWVEDT----IVYKPNSQ 152
Query: 220 SGGYLTVQEAPWHTPLAEAFVRGGEELGYENRDINGEYQTGFMVAQGTVRNGARCSTSKA 279
S W + AF+ G + N + +++ G + T N +
Sbjct: 153 S----------WQSVTKTAFLEAGV---HPNHGFSLDHEEGTRITGSTFDNKGTRHAADE 199
Query: 280 FLQPVKTRPNLHISLHSHVTKVLI-DPKNRMAIGVEFVKNH---QRHVIRARKEVILSGG 335
L + NL + +H+ V K++ + A GV + ++ + +R++ EVI+S G
Sbjct: 200 LLNKGNSN-NLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAG 258
Query: 336 AVNSPQILMLSGIGPKDHLTDMGIKTI 362
+ +PQ+L+LSG+GP+ +L+ + I +
Sbjct: 259 TIGTPQLLLLSGVGPESYLSSLNIPVV 285
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 119/502 (23%), Positives = 184/502 (36%), Gaps = 117/502 (23%)
Query: 698 EMYPEYDFXXXXXXXXXXXXXRRLSEQKNWKVLLLEAGGEESPLSDIPCTYPALQTSPLD 757
E+ YD+ LSE+ +KVL+LE G +P YP + T+
Sbjct: 22 ELEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERG-------SLPTAYPNVLTAD-G 71
Query: 758 WQYKTEPNDRACLGLNGRRS----NWPRGKVIGGSSVLNAMLYVRGNRRDYDA----WEA 809
+ Y + D + S + RG+V+GG+S++NA +Y R N Y A W+
Sbjct: 72 FVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDM 131
Query: 810 -AGNEGWSY-RDTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFRYYSPVTEAFVESA- 866
N+ + + DT+ Y S+S + S AF+E+
Sbjct: 132 DLVNQTYEWVEDTIVYKPNSQS------------------------WQSVTKTAFLEAGV 167
Query: 867 -GELGYEVGDINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVH 925
G+ + G R TG T N A L + NL V +H+ ++
Sbjct: 168 HPNHGFSLDHEEGTRITG-----STFDNKGTRHAADELLNKGNSN-NLRVGVHASVEKII 221
Query: 926 FEPGPDGQMRATGVVVKKGRKDP--VLVRARREVILSAGAIGSPQVYLIPNEHTHYQVDL 983
F P + ATGV+ + P VR++ EVI+SAG IG+PQ+ L+
Sbjct: 222 FSNAPG--LTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGV-------- 271
Query: 984 TDGPEWPDIQLFFASAADNDDGGLF---NKRNN-----------------GLKDDYYAGV 1023
GPE L + G F N RN G+ +D+Y
Sbjct: 272 --GPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISNDFYQCS 329
Query: 1024 FE-----------------PILYRDSITLAPLLLRPRSRGRIKLRTADPLD-HPMIRPNY 1065
F P+ A + P S G + L+++ + P ++ NY
Sbjct: 330 FSSLPFTTPPFGFFPSSSYPLPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNY 389
Query: 1066 LYDEKDLKTLVEGAKIGYAITRTKAMKRFN----PVLHNVTIPGCEHTTPL-----SDAY 1116
+ DL V G K + T A+K + P + I G PL DA
Sbjct: 390 YSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGI----PLPKDQTDDAA 445
Query: 1117 WECQVRHYTMTIYHPVGTCKMG 1138
+E R + +H G C +G
Sbjct: 446 FETFCRESVASYWHYHGGCLVG 467
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 12/171 (7%)
Query: 471 FYDEVYGPINNKDVWSAIPMLLRPRSRGRIKLRSRNPLDY-PRIQPEYFSDHHDMLTLIE 529
F+ P+ N + P S G + L+S + + P ++ Y+S+ D+ +
Sbjct: 342 FFPSSSYPLPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVS 401
Query: 530 GVKIILELSKTRSFRQYESR-FHNIPFPNCTHIPM----YTDAYYECMIRHYSVTIYHPV 584
G+K I EL T + + Y+ + N IP+ DA +E R + +H
Sbjct: 402 GMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYH 461
Query: 585 GTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIG 635
G C +G V+D RV GI LRV+D S P + + +M+G
Sbjct: 462 GGCLVG------KVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLG 506
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 127/286 (44%), Gaps = 49/286 (17%)
Query: 698 EMYPEYDFXXXXXXXXXXXXXRRLSEQKNWKVLLLEAGGEESPLSDIPCTYPALQTSP-L 756
E+ YD+ LSE+ +KVL+LE G +P YP L TS
Sbjct: 22 ELEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERG-------TLPTAYPNLLTSDGF 72
Query: 757 DWQYKTEPNDRACLG--LNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEAAGNEG 814
+ + E + + + ++G + RG+V+GG+S++NA +Y R N + + A+G E
Sbjct: 73 IYNLQQEDDGQTPVERFVSGDGIDDVRGRVLGGTSMINAGVYARANTK---IFSASGIE- 128
Query: 815 WSYRDTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFR--YYSPVTEAFVESAGEL--- 869
W LV+ Y + + + + + S AF+E AG L
Sbjct: 129 WDM----------------DLVNQTYDWVEDTIVYKPDKQAWQSLTKTAFLE-AGVLPDN 171
Query: 870 GYEVGDINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARP-NLHVSLHSHAYRVHFEP 928
G+ + G R TG T + NG R ++ + + P NL V++H+ ++ F
Sbjct: 172 GFSLDHEAGTRLTGSTFDN----NGTRHASDELLNK---GDPNNLRVAVHASVEKIIFSS 224
Query: 929 GPDGQMRATGVVVKKGRKDP--VLVRARREVILSAGAIGSPQVYLI 972
G + A GV+ K P VR EVI+SAG IGSPQ+ L+
Sbjct: 225 NSSG-VTAIGVIYKDSNGTPHQAFVRGEGEVIVSAGPIGSPQLLLL 269
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 94/216 (43%), Gaps = 39/216 (18%)
Query: 158 RGKVVGGSSVLNYMLYVRGNRNDYN----HWE-SLGNPGWGAAEALYYFKKSEDNRNQYL 212
RG+V+GG+S++N +Y R N ++ W+ L N + E +K
Sbjct: 99 RGRVLGGTSMINAGVYARANTKIFSASGIEWDMDLVNQTYDWVEDTIVYKP--------- 149
Query: 213 AETPYHNSGGYLTVQEAPWHTPLAEAFVRGGEELGYENRDINGEYQTGFMVAQGTVRNGA 272
+ W + AF+ G + + +++ G + T N
Sbjct: 150 --------------DKQAWQSLTKTAFLEAGV---LPDNGFSLDHEAGTRLTGSTFDNNG 192
Query: 273 RCSTSKAFLQPVKTRPN-LHISLHSHVTKVLIDPKNR--MAIGVEFVKNH---QRHVIRA 326
S L K PN L +++H+ V K++ + AIGV + ++ + +R
Sbjct: 193 TRHASDELLN--KGDPNNLRVAVHASVEKIIFSSNSSGVTAIGVIYKDSNGTPHQAFVRG 250
Query: 327 RKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTI 362
EVI+S G + SPQ+L+LSG+GP+ +L+ + I +
Sbjct: 251 EGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIPVV 286
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 12/174 (6%)
Query: 478 PINNKDVWSAIPMLLRPRSRGRIKLRSRNPLDY-PRIQPEYFSDHHDMLTLIEGVKIILE 536
P+ N + + P S G I L S + + P ++ Y+S+ D+ + G+K I E
Sbjct: 350 PLPNSTFAHFVNKVPGPLSYGSITLNSDSDVRVAPNVKFNYYSNSTDLAHCVSGMKKIGE 409
Query: 537 LSKTRSFRQYESR-FHNIPFPNCTHIPM----YTDAYYECMIRHYSVTIYHPVGTCKMGP 591
L + + + Y+ I + IP+ DA +E R + +H G C +G
Sbjct: 410 LLSSDALKPYKVEDLPGIDGFDILGIPLPENQTDDAAFETFCREAVASYWHYHGGCLVG- 468
Query: 592 ETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDMIKQD 645
V+D RV GI LRV+D S P + + +M+G I Q+
Sbjct: 469 -----EVLDGDFRVTGINALRVVDGSTFPYSPASHPQGFYLMLGRYVGSKILQE 517
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 581 YHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSD 640
YHP+G C +G TD RV G NL V D S++P V N + + E+ +
Sbjct: 439 YHPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 492
Query: 641 -MIKQD 645
+IKQD
Sbjct: 493 RIIKQD 498
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 581 YHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSD 640
YHP+G C +G TD RV G NL V D S++P V N + + E+ +
Sbjct: 441 YHPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 641 -MIKQD 645
+IKQD
Sbjct: 495 RIIKQD 500
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 581 YHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSD 640
YHP+G C +G TD RV G NL V D S++P V N + + E+ +
Sbjct: 441 YHPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 641 -MIKQD 645
+IKQD
Sbjct: 495 RIIKQD 500
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 581 YHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSD 640
YHP+G C +G TD RV G NL V D S++P V + + + E+ +
Sbjct: 441 YHPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVDPFVTITALAERNVE 494
Query: 641 -MIKQD 645
+IKQD
Sbjct: 495 RIIKQD 500
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 581 YHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSD 640
Y P+G C +G TD RV G NL V D S++P V N + + E+ +
Sbjct: 443 YQPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 496
Query: 641 -MIKQD 645
+IKQD
Sbjct: 497 RIIKQD 502
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 581 YHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSD 640
Y+P+G C +G TD RV G NL V D S++P V N + + E+ +
Sbjct: 441 YNPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 641 -MIKQD 645
+IKQD
Sbjct: 495 RIIKQD 500
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 37.7 bits (86), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 581 YHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSD 640
Y P+G C +G TD RV G NL V D S++P V N + + E+ +
Sbjct: 441 YQPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 641 -MIKQD 645
+IKQD
Sbjct: 495 RIIKQD 500
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 581 YHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSD 640
Y P+G C +G TD RV G NL V D S++P V N + + E+ +
Sbjct: 441 YQPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 641 -MIKQD 645
+IKQD
Sbjct: 495 RIIKQD 500
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 581 YHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSD 640
YHP+G C +G TD RV G NL V D S++P V + + E+ +
Sbjct: 441 YHPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVLPFVTITALAERNVE 494
Query: 641 -MIKQD 645
+IKQD
Sbjct: 495 RIIKQD 500
>pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With
L-Vinylglycine
Length = 473
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 306 KNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDL 365
+N + + + FV++ H+I + I SG A +SP + + + KD D + Q +
Sbjct: 210 RNELYLLLSFVEDKGIHLI---SDEIYSGTAFSSPSFISVMEV-LKDRNCDENSEVWQRV 265
Query: 366 KVGYNLQDHVGLGGF 380
V Y+L +GL GF
Sbjct: 266 HVVYSLSKDLGLPGF 280
>pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-
Aminoethoxyvinylglycine
pdb|1M4N|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With
[2-(Amino-
Oxy)ethyl](5'-Deoxyadenosin-5'-Yl)(Methyl)sulfonium
Length = 435
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 306 KNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDL 365
+N + + + FV++ H+I + I SG A +SP + + + KD D + Q +
Sbjct: 210 RNELYLLLSFVEDKGIHLI---SDEIYSGTAFSSPSFISVMEV-LKDRNCDENSEVWQRV 265
Query: 366 KVGYNLQDHVGLGGF 380
V Y+L +GL GF
Sbjct: 266 HVVYSLSKDLGLPGF 280
>pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase
pdb|1B8G|B Chain B, 1-aminocyclopropane-1-carboxylate Synthase
Length = 429
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 306 KNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDL 365
+N + + + FV++ H+I + I SG A +SP + + + KD D + Q +
Sbjct: 208 RNELYLLLSFVEDKGIHLI---SDEIYSGTAFSSPSFISVMEV-LKDRNCDENSEVWQRV 263
Query: 366 KVGYNLQDHVGLGGF 380
V Y+L +GL GF
Sbjct: 264 HVVYSLSKDLGLPGF 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,403,118
Number of Sequences: 62578
Number of extensions: 1824498
Number of successful extensions: 3895
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3748
Number of HSP's gapped (non-prelim): 81
length of query: 1306
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1196
effective length of database: 8,089,757
effective search space: 9675349372
effective search space used: 9675349372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)