Query psy1043
Match_columns 1306
No_of_seqs 730 out of 4694
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 17:41:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 3E-104 7E-109 920.6 48.3 549 75-650 53-620 (623)
2 KOG1238|consensus 100.0 4.7E-85 1E-89 760.2 40.3 506 684-1197 39-619 (623)
3 PRK02106 choline dehydrogenase 100.0 1E-76 2.3E-81 737.3 51.9 525 77-646 3-535 (560)
4 TIGR01810 betA choline dehydro 100.0 6.8E-76 1.5E-80 726.4 51.5 522 81-645 1-529 (532)
5 COG2303 BetA Choline dehydroge 100.0 4.4E-70 9.5E-75 665.9 38.3 525 76-645 4-536 (542)
6 PLN02785 Protein HOTHEAD 100.0 1E-67 2.2E-72 647.7 42.7 506 77-647 53-581 (587)
7 PRK02106 choline dehydrogenase 100.0 4.8E-61 1E-65 597.1 42.6 473 701-1195 4-536 (560)
8 TIGR01810 betA choline dehydro 100.0 4.8E-60 1E-64 585.2 42.5 469 704-1193 1-529 (532)
9 COG2303 BetA Choline dehydroge 100.0 1.2E-56 2.6E-61 547.8 39.1 475 699-1192 4-535 (542)
10 PLN02785 Protein HOTHEAD 100.0 1.7E-52 3.7E-57 513.4 41.6 449 700-1194 53-580 (587)
11 TIGR02462 pyranose_ox pyranose 100.0 7.4E-47 1.6E-51 452.8 35.0 490 80-646 1-543 (544)
12 PF00732 GMC_oxred_N: GMC oxid 100.0 3.9E-46 8.5E-51 429.2 17.3 289 80-375 1-295 (296)
13 TIGR02462 pyranose_ox pyranose 100.0 3.8E-40 8.3E-45 395.0 36.2 433 703-1195 1-544 (544)
14 PF00732 GMC_oxred_N: GMC oxid 100.0 9.1E-33 2E-37 318.1 15.6 262 703-974 1-267 (296)
15 PF05199 GMC_oxred_C: GMC oxid 100.0 1.8E-30 3.9E-35 264.8 13.4 143 494-638 1-144 (144)
16 PF05199 GMC_oxred_C: GMC oxid 100.0 7.9E-29 1.7E-33 252.7 13.3 143 1042-1186 1-144 (144)
17 PRK07121 hypothetical protein; 99.4 3.9E-12 8.6E-17 156.7 16.0 65 901-971 180-245 (492)
18 PRK12845 3-ketosteroid-delta-1 99.4 4.3E-12 9.4E-17 157.0 16.0 59 903-968 222-281 (564)
19 PRK12835 3-ketosteroid-delta-1 99.4 7.4E-12 1.6E-16 156.0 16.3 66 900-971 215-282 (584)
20 PRK06481 fumarate reductase fl 99.3 6.7E-12 1.5E-16 154.5 14.8 60 903-970 195-256 (506)
21 PRK12837 3-ketosteroid-delta-1 99.3 8.4E-12 1.8E-16 153.9 15.1 60 902-968 178-238 (513)
22 PRK12844 3-ketosteroid-delta-1 99.3 7.7E-12 1.7E-16 155.3 14.5 64 901-971 211-275 (557)
23 PF00890 FAD_binding_2: FAD bi 99.3 6.1E-12 1.3E-16 152.5 11.5 57 902-966 145-204 (417)
24 PRK07121 hypothetical protein; 99.3 4.8E-11 1E-15 147.2 19.4 64 281-345 183-246 (492)
25 PRK08274 tricarballylate dehyd 99.3 3.4E-11 7.4E-16 147.8 15.7 62 903-972 136-199 (466)
26 PRK12835 3-ketosteroid-delta-1 99.3 5.4E-11 1.2E-15 148.3 17.3 63 281-344 219-282 (584)
27 PRK06175 L-aspartate oxidase; 99.3 5.1E-11 1.1E-15 143.6 15.8 56 903-966 134-190 (433)
28 PRK12837 3-ketosteroid-delta-1 99.3 7.7E-11 1.7E-15 145.5 17.5 63 280-344 179-241 (513)
29 PRK12845 3-ketosteroid-delta-1 99.2 1.5E-10 3.3E-15 143.4 17.9 59 284-344 226-284 (564)
30 TIGR01373 soxB sarcosine oxida 99.2 8.2E-10 1.8E-14 133.4 23.7 54 904-967 189-242 (407)
31 PLN00128 Succinate dehydrogena 99.2 5.4E-11 1.2E-15 149.0 13.6 56 904-966 193-251 (635)
32 PRK08274 tricarballylate dehyd 99.2 1.8E-10 3.8E-15 141.6 17.5 65 283-350 139-204 (466)
33 PRK06481 fumarate reductase fl 99.2 2E-10 4.4E-15 141.5 17.7 58 284-344 199-257 (506)
34 PRK06452 sdhA succinate dehydr 99.2 1.1E-10 2.4E-15 145.3 15.4 54 904-965 142-198 (566)
35 PF00890 FAD_binding_2: FAD bi 99.2 2.3E-10 5.1E-15 138.7 17.5 57 284-344 150-208 (417)
36 PRK07395 L-aspartate oxidase; 99.2 7.5E-11 1.6E-15 145.9 13.3 52 909-966 146-198 (553)
37 COG2081 Predicted flavoprotein 99.2 2.3E-10 5.1E-15 128.4 14.7 91 859-969 81-171 (408)
38 PRK08958 sdhA succinate dehydr 99.2 8.9E-11 1.9E-15 146.5 12.7 59 901-966 146-207 (588)
39 PRK07573 sdhA succinate dehydr 99.2 1.1E-10 2.4E-15 146.7 13.7 55 904-966 176-233 (640)
40 PLN02815 L-aspartate oxidase 99.2 1.5E-10 3.2E-15 143.7 14.2 56 907-966 165-223 (594)
41 PRK05945 sdhA succinate dehydr 99.2 1E-10 2.2E-15 146.3 12.7 57 902-966 139-198 (575)
42 PRK07804 L-aspartate oxidase; 99.2 1.9E-10 4.2E-15 142.6 15.0 60 900-966 146-211 (541)
43 PTZ00139 Succinate dehydrogena 99.2 1.1E-10 2.4E-15 146.3 12.9 58 901-966 169-230 (617)
44 PRK07843 3-ketosteroid-delta-1 99.2 3.1E-10 6.7E-15 141.3 16.6 64 902-972 212-276 (557)
45 TIGR01813 flavo_cyto_c flavocy 99.2 1.7E-10 3.7E-15 140.7 13.4 60 900-966 132-193 (439)
46 PRK12844 3-ketosteroid-delta-1 99.2 5.8E-10 1.3E-14 138.7 18.4 60 283-344 216-275 (557)
47 PRK09078 sdhA succinate dehydr 99.1 2.2E-10 4.8E-15 143.4 14.3 57 903-966 154-213 (598)
48 PRK12834 putative FAD-binding 99.1 5.2E-10 1.1E-14 139.4 17.5 35 701-736 3-37 (549)
49 PF01266 DAO: FAD dependent ox 99.1 1.1E-10 2.3E-15 138.5 10.3 58 902-971 151-208 (358)
50 PTZ00306 NADH-dependent fumara 99.1 7.6E-10 1.7E-14 148.2 18.7 74 1126-1202 827-910 (1167)
51 PRK06263 sdhA succinate dehydr 99.1 3.2E-10 6.9E-15 141.2 14.1 57 903-966 139-198 (543)
52 PRK06134 putative FAD-binding 99.1 5.2E-10 1.1E-14 140.0 15.7 62 903-971 222-284 (581)
53 PRK06175 L-aspartate oxidase; 99.1 6.3E-10 1.4E-14 134.2 15.7 54 283-339 137-190 (433)
54 TIGR00551 nadB L-aspartate oxi 99.1 4.4E-10 9.4E-15 138.2 14.2 57 902-966 132-190 (488)
55 PRK12843 putative FAD-binding 99.1 6E-10 1.3E-14 139.3 15.6 62 903-971 226-288 (578)
56 PRK08626 fumarate reductase fl 99.1 6.1E-10 1.3E-14 140.3 15.2 55 904-966 164-221 (657)
57 PRK12839 hypothetical protein; 99.1 6.5E-10 1.4E-14 138.2 15.2 63 1126-1193 500-567 (572)
58 PRK08641 sdhA succinate dehydr 99.1 4.9E-10 1.1E-14 140.1 14.1 35 701-736 2-36 (589)
59 PRK07803 sdhA succinate dehydr 99.1 2.5E-10 5.5E-15 143.5 11.6 35 701-736 7-41 (626)
60 PRK09231 fumarate reductase fl 99.1 4.4E-10 9.5E-15 140.3 13.2 50 909-966 145-197 (582)
61 PRK12842 putative succinate de 99.1 7.6E-10 1.6E-14 138.6 15.1 61 904-971 220-281 (574)
62 PRK08071 L-aspartate oxidase; 99.1 5.5E-10 1.2E-14 137.5 13.5 54 904-966 136-191 (510)
63 PRK07395 L-aspartate oxidase; 99.1 9.5E-10 2E-14 136.2 15.5 53 286-339 146-198 (553)
64 PRK07057 sdhA succinate dehydr 99.1 7.4E-10 1.6E-14 138.6 14.7 57 903-966 153-212 (591)
65 PRK11101 glpA sn-glycerol-3-ph 99.1 6.5E-10 1.4E-14 138.1 14.0 56 906-970 157-215 (546)
66 TIGR01176 fum_red_Fp fumarate 99.1 4.9E-10 1.1E-14 139.5 12.8 50 909-966 144-196 (580)
67 TIGR01813 flavo_cyto_c flavocy 99.1 2.1E-09 4.4E-14 131.2 17.2 61 281-343 136-197 (439)
68 TIGR01812 sdhA_frdA_Gneg succi 99.1 1.3E-09 2.9E-14 136.8 15.9 56 903-966 134-192 (566)
69 PRK07573 sdhA succinate dehydr 99.1 1.8E-09 3.9E-14 135.9 16.9 52 285-339 180-233 (640)
70 PRK06069 sdhA succinate dehydr 99.1 5.8E-10 1.3E-14 139.8 11.9 51 908-966 148-201 (577)
71 PRK07843 3-ketosteroid-delta-1 99.1 2.5E-09 5.4E-14 133.2 17.4 62 283-346 216-277 (557)
72 TIGR03329 Phn_aa_oxid putative 99.0 4.1E-10 8.8E-15 137.7 10.0 36 701-736 23-59 (460)
73 TIGR02734 crtI_fam phytoene de 99.0 7.8E-09 1.7E-13 128.4 21.3 60 902-971 223-282 (502)
74 PRK09077 L-aspartate oxidase; 99.0 1.4E-09 3E-14 135.0 14.4 57 907-966 148-208 (536)
75 PRK11101 glpA sn-glycerol-3-ph 99.0 3.5E-09 7.7E-14 131.5 17.9 59 285-347 159-219 (546)
76 PRK07804 L-aspartate oxidase; 99.0 3.8E-09 8.3E-14 131.1 17.7 55 283-339 152-211 (541)
77 PRK08205 sdhA succinate dehydr 99.0 1.6E-09 3.4E-14 135.7 14.0 62 901-966 143-207 (583)
78 PF03486 HI0933_like: HI0933-l 99.0 3.2E-10 7E-15 133.9 7.3 91 860-969 80-170 (409)
79 PRK06452 sdhA succinate dehydr 99.0 3.4E-09 7.4E-14 132.1 16.5 51 285-338 146-198 (566)
80 PRK12843 putative FAD-binding 99.0 7.3E-09 1.6E-13 129.7 19.4 61 283-345 229-289 (578)
81 PRK06263 sdhA succinate dehydr 99.0 4.5E-09 9.7E-14 130.9 17.5 55 283-339 142-198 (543)
82 PRK06854 adenylylsulfate reduc 99.0 3.5E-09 7.6E-14 132.9 16.5 55 903-965 137-195 (608)
83 PRK12834 putative FAD-binding 99.0 4.4E-09 9.6E-14 131.2 17.1 35 78-113 3-37 (549)
84 PLN02815 L-aspartate oxidase 99.0 3.3E-09 7.2E-14 131.8 15.7 55 284-339 165-223 (594)
85 PF01266 DAO: FAD dependent ox 99.0 1.4E-09 2.9E-14 129.1 11.8 194 81-348 1-212 (358)
86 PRK07512 L-aspartate oxidase; 99.0 1.3E-09 2.8E-14 134.3 11.8 55 904-966 142-198 (513)
87 PRK12842 putative succinate de 99.0 7.6E-09 1.7E-13 129.7 18.8 60 284-345 223-282 (574)
88 PRK08275 putative oxidoreducta 99.0 3.7E-09 8E-14 131.9 15.5 59 901-966 140-201 (554)
89 PRK08958 sdhA succinate dehydr 99.0 5E-09 1.1E-13 131.0 16.5 54 284-339 152-207 (588)
90 TIGR01811 sdhA_Bsu succinate d 99.0 1.8E-09 4E-14 135.1 12.2 51 909-966 144-197 (603)
91 PRK06134 putative FAD-binding 99.0 1E-08 2.2E-13 128.4 18.9 60 283-344 225-284 (581)
92 COG0029 NadB Aspartate oxidase 99.0 2.9E-08 6.3E-13 114.2 20.2 100 858-965 88-196 (518)
93 PRK12839 hypothetical protein; 99.0 1.1E-08 2.4E-13 127.3 18.2 59 284-343 223-281 (572)
94 PLN00128 Succinate dehydrogena 99.0 7.6E-09 1.7E-13 129.8 16.8 53 285-339 197-251 (635)
95 PRK09078 sdhA succinate dehydr 99.0 8.4E-09 1.8E-13 129.3 17.1 54 284-339 158-213 (598)
96 PRK08401 L-aspartate oxidase; 99.0 7.2E-09 1.6E-13 126.6 16.0 93 860-966 84-176 (466)
97 KOG4254|consensus 99.0 3.4E-09 7.4E-14 118.8 11.6 60 903-972 269-328 (561)
98 COG0579 Predicted dehydrogenas 99.0 4.6E-09 9.9E-14 122.5 13.1 201 701-972 2-217 (429)
99 PTZ00139 Succinate dehydrogena 98.9 8E-09 1.7E-13 129.7 16.2 54 284-339 175-230 (617)
100 TIGR02061 aprA adenosine phosp 98.9 1.5E-08 3.2E-13 126.0 17.7 57 904-965 132-191 (614)
101 PTZ00306 NADH-dependent fumara 98.9 1.3E-08 2.9E-13 136.3 18.7 54 287-341 559-623 (1167)
102 PRK08626 fumarate reductase fl 98.9 6.8E-09 1.5E-13 130.9 14.7 54 283-339 166-221 (657)
103 PRK08641 sdhA succinate dehydr 98.9 1.8E-08 3.9E-13 126.2 18.2 50 288-339 150-201 (589)
104 PRK05945 sdhA succinate dehydr 98.9 1.1E-08 2.5E-13 128.0 15.7 54 283-339 143-198 (575)
105 TIGR00551 nadB L-aspartate oxi 98.9 1.6E-08 3.5E-13 124.4 16.7 50 287-339 141-190 (488)
106 PRK12409 D-amino acid dehydrog 98.9 1.3E-08 2.9E-13 123.0 15.7 33 703-736 2-34 (410)
107 TIGR02730 carot_isom carotene 98.9 9.5E-08 2.1E-12 118.1 23.3 60 902-971 233-292 (493)
108 TIGR01377 soxA_mon sarcosine o 98.9 1.4E-08 3E-13 121.7 15.3 33 703-736 1-33 (380)
109 PRK00711 D-amino acid dehydrog 98.9 7.9E-09 1.7E-13 125.4 13.3 55 904-970 207-261 (416)
110 PRK12409 D-amino acid dehydrog 98.9 1.4E-08 3E-13 122.8 15.4 33 80-113 2-34 (410)
111 PLN02661 Putative thiazole syn 98.9 9.6E-09 2.1E-13 116.6 12.7 35 702-736 92-126 (357)
112 COG0665 DadA Glycine/D-amino a 98.9 1.6E-07 3.5E-12 112.8 23.9 35 701-736 3-37 (387)
113 TIGR02733 desat_CrtD C-3',4' d 98.9 8.8E-08 1.9E-12 118.6 22.2 60 903-970 237-299 (492)
114 TIGR01812 sdhA_frdA_Gneg succi 98.9 1.8E-08 4E-13 126.5 16.1 52 285-339 139-192 (566)
115 PRK06854 adenylylsulfate reduc 98.9 2.4E-08 5.1E-13 125.4 16.9 50 286-338 144-195 (608)
116 PRK07803 sdhA succinate dehydr 98.9 2E-08 4.2E-13 126.6 16.1 48 289-339 165-214 (626)
117 PRK09077 L-aspartate oxidase; 98.9 2.7E-08 5.8E-13 123.6 17.1 55 284-339 148-208 (536)
118 PRK04176 ribulose-1,5-biphosph 98.9 1.2E-08 2.5E-13 113.8 12.4 34 702-736 25-58 (257)
119 COG2081 Predicted flavoprotein 98.9 6.6E-09 1.4E-13 116.9 10.1 36 78-114 2-37 (408)
120 PRK07512 L-aspartate oxidase; 98.9 1.8E-08 3.9E-13 124.3 14.9 51 286-339 148-198 (513)
121 PRK08205 sdhA succinate dehydr 98.9 2.9E-08 6.3E-13 124.4 16.6 58 281-339 146-207 (583)
122 PRK09231 fumarate reductase fl 98.9 2.8E-08 6.1E-13 124.2 16.3 52 285-339 144-197 (582)
123 PRK06069 sdhA succinate dehydr 98.9 2.6E-08 5.5E-13 125.0 16.0 52 285-339 148-201 (577)
124 PRK08275 putative oxidoreducta 98.9 2.3E-08 5.1E-13 124.7 15.4 56 281-338 143-200 (554)
125 TIGR01176 fum_red_Fp fumarate 98.8 2.8E-08 6E-13 124.0 15.8 51 286-339 144-196 (580)
126 PRK07057 sdhA succinate dehydr 98.8 4.3E-08 9.3E-13 122.9 17.6 53 285-339 158-212 (591)
127 TIGR00292 thiazole biosynthesi 98.8 1.6E-08 3.5E-13 112.2 12.2 34 702-736 21-54 (254)
128 COG0579 Predicted dehydrogenas 98.8 2.1E-08 4.5E-13 117.2 13.3 207 78-351 2-223 (429)
129 PRK08071 L-aspartate oxidase; 98.8 4E-08 8.7E-13 121.1 16.5 49 288-339 142-191 (510)
130 PRK11259 solA N-methyltryptoph 98.8 1.2E-08 2.6E-13 122.0 11.2 35 701-736 2-36 (376)
131 PRK11728 hydroxyglutarate oxid 98.8 1.8E-08 4E-13 120.9 12.8 34 702-736 2-37 (393)
132 TIGR01811 sdhA_Bsu succinate d 98.8 3E-08 6.6E-13 124.2 15.1 52 286-339 144-197 (603)
133 PLN02464 glycerol-3-phosphate 98.8 1.9E-08 4E-13 126.5 13.2 72 664-736 33-104 (627)
134 PTZ00383 malate:quinone oxidor 98.8 2.2E-08 4.8E-13 121.5 13.1 56 904-971 217-278 (497)
135 COG1635 THI4 Ribulose 1,5-bisp 98.8 1.9E-08 4.2E-13 103.1 10.4 34 702-736 30-63 (262)
136 PRK13800 putative oxidoreducta 98.8 7.5E-08 1.6E-12 126.5 18.6 35 701-736 12-46 (897)
137 PTZ00383 malate:quinone oxidor 98.8 1.1E-07 2.5E-12 115.3 18.6 53 290-350 232-284 (497)
138 TIGR01373 soxB sarcosine oxida 98.8 2E-08 4.4E-13 121.3 12.2 58 284-348 192-249 (407)
139 TIGR03364 HpnW_proposed FAD de 98.8 1.8E-08 3.9E-13 119.9 11.0 33 703-736 1-33 (365)
140 TIGR01377 soxA_mon sarcosine o 98.8 7.5E-08 1.6E-12 115.3 16.2 33 80-113 1-33 (380)
141 COG1053 SdhA Succinate dehydro 98.8 3.8E-08 8.3E-13 120.5 13.6 36 700-736 4-39 (562)
142 PF01946 Thi4: Thi4 family; PD 98.8 2.8E-08 6.1E-13 103.1 10.3 34 702-736 17-50 (230)
143 TIGR02485 CobZ_N-term precorri 98.8 2.3E-08 5.1E-13 121.4 11.3 64 901-971 126-189 (432)
144 PF03486 HI0933_like: HI0933-l 98.8 5.1E-09 1.1E-13 123.8 5.3 54 283-342 117-170 (409)
145 TIGR03329 Phn_aa_oxid putative 98.8 2E-08 4.3E-13 122.9 10.4 36 78-113 23-59 (460)
146 PRK05257 malate:quinone oxidor 98.8 1.2E-07 2.7E-12 115.6 17.0 60 286-349 195-256 (494)
147 PRK05257 malate:quinone oxidor 98.8 5.6E-08 1.2E-12 118.5 13.9 36 701-736 4-40 (494)
148 PRK00711 D-amino acid dehydrog 98.7 4.8E-08 1E-12 118.5 12.7 54 284-345 210-263 (416)
149 PRK11728 hydroxyglutarate oxid 98.7 1.4E-07 3.1E-12 113.3 16.5 57 284-349 158-214 (393)
150 PTZ00363 rab-GDP dissociation 98.7 1.4E-07 3E-12 112.9 15.9 41 699-740 1-41 (443)
151 PLN02661 Putative thiazole syn 98.7 4.8E-08 1E-12 110.9 11.3 36 78-113 91-126 (357)
152 COG3573 Predicted oxidoreducta 98.7 3.9E-08 8.5E-13 105.8 9.7 67 900-972 155-235 (552)
153 TIGR01320 mal_quin_oxido malat 98.7 4.3E-08 9.4E-13 119.5 11.4 62 284-349 187-250 (483)
154 PRK13800 putative oxidoreducta 98.7 1.8E-07 3.9E-12 123.0 17.7 49 287-338 155-205 (897)
155 PRK04176 ribulose-1,5-biphosph 98.7 5.4E-08 1.2E-12 108.5 11.0 35 78-113 24-58 (257)
156 TIGR02061 aprA adenosine phosp 98.7 1.8E-07 3.8E-12 116.5 16.1 51 287-338 138-191 (614)
157 TIGR00292 thiazole biosynthesi 98.7 6.4E-08 1.4E-12 107.5 10.8 35 78-113 20-54 (254)
158 COG1233 Phytoene dehydrogenase 98.7 2.2E-08 4.8E-13 122.7 7.6 60 900-970 226-285 (487)
159 PRK12266 glpD glycerol-3-phosp 98.7 6.6E-08 1.4E-12 119.3 11.4 37 699-736 3-39 (508)
160 KOG2820|consensus 98.7 1E-07 2.2E-12 103.8 11.3 60 903-971 158-217 (399)
161 PRK08401 L-aspartate oxidase; 98.7 2.1E-07 4.5E-12 113.9 15.6 33 80-113 2-34 (466)
162 PRK13369 glycerol-3-phosphate 98.7 1.6E-07 3.4E-12 116.2 14.2 37 699-736 3-39 (502)
163 PLN02464 glycerol-3-phosphate 98.7 2E-07 4.4E-12 117.2 15.3 62 284-347 241-304 (627)
164 PRK05192 tRNA uridine 5-carbox 98.7 1.2E-07 2.6E-12 115.4 12.3 50 909-969 112-161 (618)
165 PRK11259 solA N-methyltryptoph 98.7 1.7E-07 3.8E-12 112.0 13.7 35 78-113 2-36 (376)
166 TIGR03364 HpnW_proposed FAD de 98.6 2.6E-07 5.7E-12 109.9 14.8 33 80-113 1-33 (365)
167 TIGR01320 mal_quin_oxido malat 98.6 1.6E-07 3.6E-12 114.4 13.2 34 703-736 1-35 (483)
168 PRK13339 malate:quinone oxidor 98.6 5.3E-07 1.1E-11 109.1 16.7 67 279-349 189-257 (497)
169 PF01946 Thi4: Thi4 family; PD 98.6 2.9E-07 6.3E-12 95.7 11.9 35 78-113 16-50 (230)
170 PRK01747 mnmC bifunctional tRN 98.6 1E-07 2.3E-12 121.8 10.7 34 702-736 260-293 (662)
171 PRK10157 putative oxidoreducta 98.6 8.2E-08 1.8E-12 116.1 8.9 55 898-963 108-162 (428)
172 PRK13339 malate:quinone oxidor 98.6 1E-06 2.2E-11 106.7 17.6 36 701-736 5-41 (497)
173 COG0029 NadB Aspartate oxidase 98.6 4.9E-07 1.1E-11 104.3 13.8 57 280-338 139-196 (518)
174 TIGR02485 CobZ_N-term precorri 98.6 3.9E-07 8.6E-12 110.7 13.8 60 283-345 131-190 (432)
175 PRK12266 glpD glycerol-3-phosp 98.6 2.5E-07 5.4E-12 114.2 11.9 37 76-113 3-39 (508)
176 COG0578 GlpA Glycerol-3-phosph 98.6 3.1E-07 6.7E-12 109.5 12.1 51 906-965 172-225 (532)
177 COG1053 SdhA Succinate dehydro 98.6 4.2E-07 9.1E-12 111.5 13.4 51 286-338 150-202 (562)
178 COG0578 GlpA Glycerol-3-phosph 98.6 1.5E-06 3.2E-11 103.8 17.6 74 285-363 174-252 (532)
179 COG1635 THI4 Ribulose 1,5-bisp 98.6 2.7E-07 5.7E-12 94.9 9.6 33 79-112 30-62 (262)
180 PF01134 GIDA: Glucose inhibit 98.5 1.6E-07 3.4E-12 108.6 8.7 53 908-971 106-158 (392)
181 COG3573 Predicted oxidoreducta 98.5 6.4E-07 1.4E-11 96.6 12.6 36 78-114 4-39 (552)
182 PF12831 FAD_oxidored: FAD dep 98.5 8.1E-08 1.8E-12 116.1 6.5 52 902-962 94-147 (428)
183 PRK10015 oxidoreductase; Provi 98.5 2.1E-07 4.6E-12 112.4 9.9 54 899-963 109-162 (429)
184 COG0644 FixC Dehydrogenases (f 98.5 3.9E-07 8.4E-12 109.3 12.0 36 701-737 2-37 (396)
185 PRK13369 glycerol-3-phosphate 98.5 3.4E-07 7.3E-12 113.2 10.2 37 76-113 3-39 (502)
186 PF12831 FAD_oxidored: FAD dep 98.5 1E-07 2.3E-12 115.1 5.5 63 280-348 95-157 (428)
187 KOG2844|consensus 98.5 5.4E-07 1.2E-11 105.9 10.2 194 699-965 36-243 (856)
188 PRK13977 myosin-cross-reactive 98.5 1.1E-06 2.4E-11 106.0 12.9 62 904-966 232-294 (576)
189 KOG2404|consensus 98.4 9.3E-07 2E-11 95.2 10.6 53 912-972 159-214 (477)
190 PRK05192 tRNA uridine 5-carbox 98.4 1.3E-06 2.9E-11 106.4 12.4 35 78-113 3-37 (618)
191 PRK10157 putative oxidoreducta 98.4 8.5E-07 1.9E-11 107.3 10.7 36 78-114 4-39 (428)
192 PF13738 Pyr_redox_3: Pyridine 98.4 3.1E-07 6.8E-12 99.4 6.0 63 900-973 84-146 (203)
193 PTZ00363 rab-GDP dissociation 98.4 3.2E-06 6.9E-11 101.4 13.5 41 76-117 1-41 (443)
194 COG3380 Predicted NAD/FAD-depe 98.3 2.9E-06 6.4E-11 90.0 11.2 32 704-736 3-34 (331)
195 COG0644 FixC Dehydrogenases (f 98.3 1.6E-06 3.5E-11 104.0 10.6 37 78-115 2-38 (396)
196 PRK01747 mnmC bifunctional tRN 98.3 1E-06 2.2E-11 112.8 9.4 34 79-113 260-293 (662)
197 TIGR00275 flavoprotein, HI0933 98.3 2.7E-06 5.8E-11 102.0 12.2 58 899-968 106-163 (400)
198 PRK10015 oxidoreductase; Provi 98.3 1.8E-06 3.9E-11 104.4 9.0 36 78-114 4-39 (429)
199 PF06039 Mqo: Malate:quinone o 98.3 6.3E-06 1.4E-10 95.2 12.4 68 280-349 187-254 (488)
200 PLN02697 lycopene epsilon cycl 98.3 9.3E-05 2E-09 90.7 23.4 59 1130-1198 356-414 (529)
201 KOG2415|consensus 98.3 1.5E-06 3.2E-11 96.7 6.8 72 896-972 181-265 (621)
202 KOG2820|consensus 98.2 4.2E-06 9E-11 91.5 9.9 59 283-346 161-219 (399)
203 PLN02172 flavin-containing mon 98.2 8.8E-06 1.9E-10 98.7 13.5 37 699-736 7-43 (461)
204 COG0665 DadA Glycine/D-amino a 98.2 7.5E-06 1.6E-10 98.4 12.6 35 78-113 3-37 (387)
205 COG1233 Phytoene dehydrogenase 98.2 3E-06 6.4E-11 104.1 8.8 38 78-116 2-39 (487)
206 PRK08773 2-octaprenyl-3-methyl 98.2 1.4E-05 3.1E-10 96.1 14.5 36 700-736 4-39 (392)
207 PRK13977 myosin-cross-reactive 98.2 8.1E-06 1.7E-10 98.7 11.9 55 284-338 235-293 (576)
208 KOG1298|consensus 98.2 5.6E-06 1.2E-10 91.7 9.6 60 906-972 156-215 (509)
209 PRK07208 hypothetical protein; 98.2 4E-05 8.6E-10 94.8 18.5 40 699-739 1-40 (479)
210 COG3380 Predicted NAD/FAD-depe 98.2 4.7E-06 1E-10 88.4 8.6 32 81-113 3-34 (331)
211 PRK06847 hypothetical protein; 98.2 2.2E-05 4.8E-10 93.9 15.1 61 900-971 109-169 (375)
212 TIGR00136 gidA glucose-inhibit 98.2 6.5E-06 1.4E-10 100.3 10.4 58 904-971 102-160 (617)
213 COG0445 GidA Flavin-dependent 98.2 2.5E-06 5.5E-11 99.2 6.4 54 908-971 111-164 (621)
214 KOG0042|consensus 98.1 1.6E-06 3.5E-11 99.8 4.6 86 876-971 205-293 (680)
215 PF01134 GIDA: Glucose inhibit 98.1 3.7E-06 8E-11 97.4 7.6 47 284-337 105-151 (392)
216 COG1249 Lpd Pyruvate/2-oxoglut 98.1 1.9E-05 4.1E-10 94.5 13.8 36 700-736 2-37 (454)
217 KOG2415|consensus 98.1 6E-06 1.3E-10 92.0 8.7 72 274-347 182-267 (621)
218 PRK05329 anaerobic glycerol-3- 98.1 4E-06 8.7E-11 99.7 8.0 61 901-969 262-322 (422)
219 PRK06184 hypothetical protein; 98.1 2.9E-05 6.2E-10 96.5 15.8 35 701-736 2-36 (502)
220 PRK09126 hypothetical protein; 98.1 3.6E-05 7.9E-10 92.6 16.2 34 702-736 3-36 (392)
221 PRK05675 sdhA succinate dehydr 98.1 7.9E-06 1.7E-10 102.2 10.7 58 902-966 130-190 (570)
222 PRK07364 2-octaprenyl-6-methox 98.1 3.3E-05 7.2E-10 93.7 15.4 36 700-736 16-51 (415)
223 TIGR02032 GG-red-SF geranylger 98.1 1.4E-05 3E-10 92.0 11.4 33 703-736 1-33 (295)
224 PRK06834 hypothetical protein; 98.1 2.6E-05 5.7E-10 95.8 14.2 62 899-971 101-162 (488)
225 PRK07364 2-octaprenyl-6-methox 98.1 2.6E-05 5.6E-10 94.7 14.1 38 76-114 15-52 (415)
226 PLN02985 squalene monooxygenas 98.1 5E-05 1.1E-09 93.6 16.5 36 700-736 41-76 (514)
227 PRK06467 dihydrolipoamide dehy 98.1 1.7E-05 3.8E-10 97.3 12.2 36 700-736 2-37 (471)
228 KOG0042|consensus 98.1 3E-06 6.5E-11 97.7 5.0 79 257-340 209-289 (680)
229 TIGR03378 glycerol3P_GlpB glyc 98.1 2.5E-05 5.5E-10 91.7 12.7 59 904-970 269-327 (419)
230 PRK06185 hypothetical protein; 98.1 3.7E-05 7.9E-10 93.1 14.5 35 701-736 5-39 (407)
231 PRK05976 dihydrolipoamide dehy 98.1 2.1E-05 4.6E-10 96.8 12.5 35 700-735 2-36 (472)
232 KOG1298|consensus 98.1 1.2E-05 2.6E-10 89.2 9.0 52 284-339 157-209 (509)
233 COG0654 UbiH 2-polyprenyl-6-me 98.1 2.7E-05 5.9E-10 93.3 13.0 33 702-735 2-34 (387)
234 COG2509 Uncharacterized FAD-de 98.1 5.4E-05 1.2E-09 86.7 14.4 59 904-972 179-237 (486)
235 PRK06185 hypothetical protein; 98.1 2.3E-05 5E-10 94.8 12.5 35 78-113 5-39 (407)
236 KOG2844|consensus 98.1 7.8E-06 1.7E-10 96.5 7.7 202 76-347 36-251 (856)
237 PRK05249 soluble pyridine nucl 98.0 2.1E-05 4.7E-10 96.6 11.9 35 701-736 4-38 (461)
238 PLN02463 lycopene beta cyclase 98.0 2.5E-05 5.4E-10 94.2 11.9 35 701-736 27-61 (447)
239 PRK07190 hypothetical protein; 98.0 4.3E-05 9.4E-10 93.8 14.0 35 701-736 4-38 (487)
240 KOG2404|consensus 98.0 2.7E-05 5.9E-10 84.2 10.3 48 289-339 159-207 (477)
241 TIGR01988 Ubi-OHases Ubiquinon 98.0 3.7E-05 8.1E-10 92.3 13.1 32 704-736 1-32 (385)
242 PRK07608 ubiquinone biosynthes 98.0 5.5E-05 1.2E-09 90.9 14.3 34 702-736 5-38 (388)
243 PRK08013 oxidoreductase; Provi 98.0 2.3E-05 5E-10 94.4 10.8 35 701-736 2-36 (400)
244 PRK05714 2-octaprenyl-3-methyl 98.0 9.8E-05 2.1E-09 89.3 16.2 34 702-736 2-35 (405)
245 PRK08244 hypothetical protein; 98.0 7.7E-05 1.7E-09 92.5 15.6 34 702-736 2-35 (493)
246 PRK07045 putative monooxygenas 98.0 5.2E-05 1.1E-09 91.0 13.5 35 701-736 4-38 (388)
247 PRK07333 2-octaprenyl-6-methox 98.0 3.9E-05 8.5E-10 92.7 12.4 35 702-736 1-36 (403)
248 TIGR01424 gluta_reduc_2 glutat 98.0 3.7E-05 8E-10 93.9 12.2 33 702-735 2-34 (446)
249 PF01494 FAD_binding_3: FAD bi 98.0 5.5E-06 1.2E-10 98.1 4.6 34 702-736 1-34 (356)
250 PLN02172 flavin-containing mon 98.0 3.1E-05 6.7E-10 94.0 11.0 36 78-114 9-44 (461)
251 TIGR01421 gluta_reduc_1 glutat 98.0 3.1E-05 6.7E-10 94.5 11.0 34 701-735 1-34 (450)
252 PRK05732 2-octaprenyl-6-methox 98.0 8.6E-05 1.9E-09 89.5 14.9 34 701-735 2-38 (395)
253 PRK06126 hypothetical protein; 98.0 7.8E-05 1.7E-09 93.7 15.0 35 701-736 6-40 (545)
254 COG2072 TrkA Predicted flavopr 98.0 3E-05 6.4E-10 93.8 10.7 36 700-736 6-42 (443)
255 PF06039 Mqo: Malate:quinone o 97.9 8.4E-05 1.8E-09 86.1 13.5 44 701-744 2-46 (488)
256 TIGR02023 BchP-ChlP geranylger 97.9 4.5E-05 9.9E-10 91.5 11.9 32 703-735 1-32 (388)
257 PRK11445 putative oxidoreducta 97.9 0.00012 2.7E-09 86.4 15.3 33 702-736 1-33 (351)
258 PRK08243 4-hydroxybenzoate 3-m 97.9 5.1E-05 1.1E-09 91.2 12.2 34 702-736 2-35 (392)
259 PRK08244 hypothetical protein; 97.9 6.3E-05 1.4E-09 93.3 13.4 34 79-113 2-35 (493)
260 PF13738 Pyr_redox_3: Pyridine 97.9 4.4E-06 9.5E-11 90.4 2.2 62 279-347 86-147 (203)
261 PLN00093 geranylgeranyl diphos 97.9 6.1E-05 1.3E-09 91.4 12.2 35 701-736 38-72 (450)
262 KOG2853|consensus 97.9 0.00034 7.3E-09 76.6 16.2 38 76-113 83-123 (509)
263 PRK07494 2-octaprenyl-6-methox 97.9 9.9E-05 2.1E-09 88.7 13.9 36 700-736 5-40 (388)
264 PRK07233 hypothetical protein; 97.9 7.1E-05 1.5E-09 91.4 12.9 56 904-970 204-259 (434)
265 PRK06183 mhpA 3-(3-hydroxyphen 97.9 0.0001 2.2E-09 92.4 14.2 36 700-736 8-43 (538)
266 PRK08849 2-octaprenyl-3-methyl 97.9 0.00016 3.4E-09 86.7 15.3 35 701-736 2-36 (384)
267 TIGR00275 flavoprotein, HI0933 97.9 3.5E-05 7.6E-10 92.4 9.6 30 83-113 1-30 (400)
268 TIGR01816 sdhA_forward succina 97.9 5.1E-05 1.1E-09 95.0 11.1 59 900-966 121-182 (565)
269 TIGR01984 UbiH 2-polyprenyl-6- 97.9 0.00011 2.3E-09 88.2 13.4 32 704-736 1-33 (382)
270 PLN02985 squalene monooxygenas 97.9 0.00013 2.7E-09 90.1 14.1 36 77-113 41-76 (514)
271 TIGR01350 lipoamide_DH dihydro 97.9 0.0002 4.3E-09 88.1 15.9 33 702-735 1-33 (461)
272 PRK08020 ubiF 2-octaprenyl-3-m 97.9 0.00013 2.9E-09 87.7 14.0 35 701-736 4-38 (391)
273 COG0492 TrxB Thioredoxin reduc 97.9 8.7E-05 1.9E-09 84.5 11.5 35 701-736 2-37 (305)
274 PRK06126 hypothetical protein; 97.8 0.00017 3.7E-09 90.6 15.4 35 78-113 6-40 (545)
275 PRK06416 dihydrolipoamide dehy 97.8 8.6E-05 1.9E-09 91.3 12.3 35 701-736 3-37 (462)
276 TIGR03143 AhpF_homolog putativ 97.8 7.3E-05 1.6E-09 93.6 11.8 35 701-736 3-37 (555)
277 TIGR02360 pbenz_hydroxyl 4-hyd 97.8 7.6E-05 1.7E-09 89.5 11.5 34 702-736 2-35 (390)
278 TIGR00136 gidA glucose-inhibit 97.8 5.8E-05 1.3E-09 92.2 10.3 33 80-113 1-33 (617)
279 TIGR01790 carotene-cycl lycope 97.8 7E-05 1.5E-09 90.0 11.1 32 704-736 1-32 (388)
280 KOG2665|consensus 97.8 7.2E-05 1.6E-09 80.9 9.7 211 77-348 46-266 (453)
281 PRK06184 hypothetical protein; 97.8 0.00012 2.7E-09 90.9 13.5 35 78-113 2-36 (502)
282 PRK08163 salicylate hydroxylas 97.8 0.00015 3.3E-09 87.3 13.9 35 701-736 3-37 (396)
283 PRK08850 2-octaprenyl-6-methox 97.8 0.00026 5.5E-09 85.6 15.7 35 700-735 2-36 (405)
284 PRK07588 hypothetical protein; 97.8 0.00022 4.7E-09 85.8 14.9 32 704-736 2-33 (391)
285 PRK07236 hypothetical protein; 97.8 0.00028 6.1E-09 84.7 15.7 35 701-736 5-39 (386)
286 PRK07190 hypothetical protein; 97.8 9.8E-05 2.1E-09 90.7 11.8 35 78-113 4-38 (487)
287 PRK08132 FAD-dependent oxidore 97.8 0.0004 8.6E-09 87.3 17.3 35 701-736 22-56 (547)
288 PRK06617 2-octaprenyl-6-methox 97.8 0.00026 5.6E-09 84.5 15.0 33 703-736 2-34 (374)
289 TIGR02732 zeta_caro_desat caro 97.8 0.00011 2.4E-09 90.0 11.9 62 906-970 227-289 (474)
290 PRK07208 hypothetical protein; 97.8 0.00018 3.9E-09 89.1 13.8 39 77-116 2-40 (479)
291 PRK05329 anaerobic glycerol-3- 97.8 5.6E-05 1.2E-09 90.1 8.9 58 281-342 265-322 (422)
292 TIGR01292 TRX_reduct thioredox 97.8 0.00013 2.7E-09 84.3 11.7 33 703-736 1-33 (300)
293 PRK08243 4-hydroxybenzoate 3-m 97.8 0.00013 2.8E-09 87.7 12.0 34 79-113 2-35 (392)
294 PLN02507 glutathione reductase 97.8 7.5E-05 1.6E-09 92.1 10.0 33 701-734 24-56 (499)
295 KOG4254|consensus 97.8 8.3E-05 1.8E-09 84.5 9.0 58 281-344 270-327 (561)
296 KOG2311|consensus 97.7 4.5E-05 9.8E-10 86.7 6.7 58 909-972 136-193 (679)
297 PRK06753 hypothetical protein; 97.7 0.00032 6.8E-09 83.8 14.6 32 704-736 2-33 (373)
298 KOG2853|consensus 97.7 0.00046 9.9E-09 75.5 13.9 40 697-736 81-123 (509)
299 PRK06847 hypothetical protein; 97.7 0.00026 5.7E-09 84.6 13.8 35 78-113 3-37 (375)
300 TIGR02352 thiamin_ThiO glycine 97.7 4E-05 8.7E-10 90.1 6.6 55 903-969 142-196 (337)
301 PLN02487 zeta-carotene desatur 97.7 0.00036 7.8E-09 86.4 15.1 62 906-970 303-365 (569)
302 COG0654 UbiH 2-polyprenyl-6-me 97.7 0.00014 2.9E-09 87.3 11.0 33 79-112 2-34 (387)
303 PRK06183 mhpA 3-(3-hydroxyphen 97.7 0.00029 6.2E-09 88.3 14.1 35 78-113 9-43 (538)
304 PRK07045 putative monooxygenas 97.7 0.00033 7.1E-09 84.2 14.1 36 78-114 4-39 (388)
305 PRK11445 putative oxidoreducta 97.7 0.00034 7.4E-09 82.6 13.8 32 80-113 2-33 (351)
306 PRK15317 alkyl hydroperoxide r 97.7 0.0002 4.2E-09 89.1 11.9 34 701-735 210-243 (517)
307 PF13450 NAD_binding_8: NAD(P) 97.7 4.3E-05 9.4E-10 66.1 4.3 30 707-737 1-30 (68)
308 PF05834 Lycopene_cycl: Lycope 97.7 0.00028 6E-09 84.0 12.5 32 704-736 1-34 (374)
309 COG2509 Uncharacterized FAD-de 97.7 0.00033 7.2E-09 80.5 11.9 56 284-345 182-237 (486)
310 COG0445 GidA Flavin-dependent 97.6 8.4E-05 1.8E-09 86.9 6.6 53 284-342 110-162 (621)
311 PRK06617 2-octaprenyl-6-methox 97.6 0.00057 1.2E-08 81.6 14.0 33 80-113 2-34 (374)
312 TIGR01988 Ubi-OHases Ubiquinon 97.6 0.00031 6.7E-09 84.3 11.7 33 81-114 1-33 (385)
313 KOG2665|consensus 97.6 0.00021 4.7E-09 77.3 8.8 207 701-972 47-263 (453)
314 TIGR02360 pbenz_hydroxyl 4-hyd 97.6 0.00032 6.9E-09 84.2 11.4 34 79-113 2-35 (390)
315 TIGR03140 AhpF alkyl hydropero 97.6 0.00036 7.8E-09 86.7 12.1 33 701-734 211-243 (515)
316 PF00743 FMO-like: Flavin-bind 97.6 9.8E-05 2.1E-09 90.9 6.9 68 898-969 84-154 (531)
317 TIGR03377 glycerol3P_GlpA glyc 97.6 9.8E-05 2.1E-09 91.9 7.0 56 906-970 136-194 (516)
318 PRK06834 hypothetical protein; 97.5 0.00051 1.1E-08 84.5 12.7 34 79-113 3-36 (488)
319 PRK05868 hypothetical protein; 97.5 0.00074 1.6E-08 80.4 13.7 32 704-736 3-34 (372)
320 COG3075 GlpB Anaerobic glycero 97.5 0.00019 4.1E-09 78.5 7.5 58 904-969 264-321 (421)
321 PF13450 NAD_binding_8: NAD(P) 97.5 8.5E-05 1.8E-09 64.3 3.8 31 84-115 1-31 (68)
322 PLN02612 phytoene desaturase 97.5 0.00062 1.3E-08 85.3 13.1 36 702-738 93-128 (567)
323 PRK05675 sdhA succinate dehydr 97.5 0.00066 1.4E-08 85.1 13.1 54 284-339 135-190 (570)
324 TIGR03377 glycerol3P_GlpA glyc 97.5 0.00027 5.9E-09 88.0 9.7 61 284-348 137-199 (516)
325 PRK07538 hypothetical protein; 97.5 0.00078 1.7E-08 81.6 13.4 32 704-736 2-33 (413)
326 PRK08132 FAD-dependent oxidore 97.5 0.0014 3E-08 82.4 16.0 36 77-113 21-56 (547)
327 PF04820 Trp_halogenase: Trypt 97.5 0.00025 5.3E-09 86.2 8.3 56 898-963 154-209 (454)
328 PRK06996 hypothetical protein; 97.5 0.001 2.2E-08 80.1 13.5 36 700-736 9-48 (398)
329 COG2072 TrkA Predicted flavopr 97.5 0.00053 1.2E-08 83.0 11.0 36 77-113 6-42 (443)
330 PTZ00058 glutathione reductase 97.5 0.00018 3.8E-09 89.3 7.0 34 701-735 47-80 (561)
331 PRK07538 hypothetical protein; 97.4 0.00084 1.8E-08 81.3 12.5 32 81-113 2-33 (413)
332 PRK06370 mercuric reductase; V 97.4 0.00011 2.5E-09 90.2 5.0 37 699-736 2-38 (463)
333 KOG2960|consensus 97.4 0.00011 2.4E-09 74.8 3.8 35 702-736 76-111 (328)
334 PRK06115 dihydrolipoamide dehy 97.4 0.00013 2.8E-09 89.6 4.9 34 701-735 2-35 (466)
335 PF13434 K_oxygenase: L-lysine 97.4 0.00026 5.6E-09 82.5 7.1 64 899-969 96-161 (341)
336 PRK06475 salicylate hydroxylas 97.4 0.0014 2.9E-08 79.1 13.2 32 704-736 4-35 (400)
337 COG1231 Monoamine oxidase [Ami 97.4 0.0025 5.3E-08 74.1 14.0 38 700-738 5-42 (450)
338 PRK08010 pyridine nucleotide-d 97.3 0.00018 3.8E-09 88.0 5.1 35 701-736 2-36 (441)
339 KOG2852|consensus 97.3 0.00015 3.2E-09 77.8 3.8 62 901-972 151-214 (380)
340 PTZ00058 glutathione reductase 97.3 0.00033 7.2E-09 86.9 7.4 34 78-112 47-80 (561)
341 PRK06116 glutathione reductase 97.3 0.00019 4E-09 88.0 5.1 36 700-736 2-37 (450)
342 TIGR02023 BchP-ChlP geranylger 97.3 0.00015 3.2E-09 87.0 4.1 32 80-112 1-32 (388)
343 PRK07818 dihydrolipoamide dehy 97.3 0.00019 4E-09 88.3 4.9 35 701-736 3-37 (466)
344 PRK07845 flavoprotein disulfid 97.3 0.001 2.3E-08 81.6 11.4 32 704-736 3-34 (466)
345 TIGR01421 gluta_reduc_1 glutat 97.3 0.00018 3.9E-09 87.8 4.7 34 78-112 1-34 (450)
346 PLN00093 geranylgeranyl diphos 97.3 0.00017 3.7E-09 87.5 4.4 35 78-113 38-72 (450)
347 TIGR02352 thiamin_ThiO glycine 97.3 0.00037 8E-09 81.9 7.1 51 284-342 146-196 (337)
348 COG0562 Glf UDP-galactopyranos 97.3 0.00019 4.1E-09 78.6 4.1 35 79-114 1-35 (374)
349 KOG1399|consensus 97.3 0.00096 2.1E-08 79.7 10.3 35 702-737 6-40 (448)
350 PRK09897 hypothetical protein; 97.3 0.0032 7E-08 77.4 14.7 34 703-736 2-36 (534)
351 TIGR02032 GG-red-SF geranylger 97.3 0.00024 5.2E-09 81.7 4.7 34 80-114 1-34 (295)
352 PRK07251 pyridine nucleotide-d 97.3 0.00026 5.6E-09 86.4 5.1 35 701-736 2-36 (438)
353 COG0562 Glf UDP-galactopyranos 97.2 0.00034 7.5E-09 76.6 5.0 36 702-738 1-36 (374)
354 PRK05976 dihydrolipoamide dehy 97.2 0.00031 6.6E-09 86.6 5.2 35 77-112 2-36 (472)
355 PRK06370 mercuric reductase; V 97.2 0.00031 6.7E-09 86.4 5.1 35 77-112 3-37 (463)
356 TIGR01424 gluta_reduc_2 glutat 97.2 0.00027 5.8E-09 86.4 4.5 33 79-112 2-34 (446)
357 PF01494 FAD_binding_3: FAD bi 97.2 0.00026 5.6E-09 83.7 4.2 35 79-114 1-35 (356)
358 PRK06116 glutathione reductase 97.2 0.0003 6.6E-09 86.1 4.8 34 78-112 3-36 (450)
359 TIGR02028 ChlP geranylgeranyl 97.2 0.0003 6.5E-09 84.5 4.4 33 703-736 1-33 (398)
360 PLN02546 glutathione reductase 97.1 0.00034 7.5E-09 86.8 4.5 33 701-734 78-110 (558)
361 TIGR01816 sdhA_forward succina 97.1 0.0038 8.2E-08 78.3 13.9 54 283-339 127-182 (565)
362 PRK08020 ubiF 2-octaprenyl-3-m 97.1 0.00041 8.9E-09 83.5 4.9 35 78-113 4-38 (391)
363 PF00743 FMO-like: Flavin-bind 97.1 0.00045 9.8E-09 85.1 5.2 32 82-114 4-35 (531)
364 PRK08773 2-octaprenyl-3-methyl 97.1 0.00046 1E-08 83.0 5.2 35 78-113 5-39 (392)
365 PRK06416 dihydrolipoamide dehy 97.1 0.00042 9.1E-09 85.3 4.9 34 78-112 3-36 (462)
366 TIGR00031 UDP-GALP_mutase UDP- 97.1 0.00052 1.1E-08 80.5 5.4 34 703-737 2-35 (377)
367 PRK08010 pyridine nucleotide-d 97.1 0.00041 8.9E-09 84.7 4.7 35 78-113 2-36 (441)
368 KOG1399|consensus 97.1 0.001 2.2E-08 79.5 7.7 35 79-114 6-40 (448)
369 TIGR01423 trypano_reduc trypan 97.1 0.00041 8.9E-09 85.1 4.7 34 701-735 2-36 (486)
370 TIGR02028 ChlP geranylgeranyl 97.1 0.00035 7.5E-09 83.9 4.0 33 80-113 1-33 (398)
371 KOG0029|consensus 97.1 0.00051 1.1E-08 83.5 5.0 39 700-739 13-51 (501)
372 TIGR02730 carot_isom carotene 97.1 0.00045 9.8E-09 85.6 4.7 56 283-344 237-292 (493)
373 PRK07608 ubiquinone biosynthes 97.1 0.0005 1.1E-08 82.6 4.9 36 78-114 4-39 (388)
374 PRK09897 hypothetical protein; 97.1 0.0048 1.1E-07 75.9 13.4 35 80-114 2-37 (534)
375 PRK06115 dihydrolipoamide dehy 97.1 0.00049 1.1E-08 84.5 4.8 33 79-112 3-35 (466)
376 COG1232 HemY Protoporphyrinoge 97.1 0.00071 1.5E-08 80.3 5.9 34 705-739 3-38 (444)
377 KOG0405|consensus 97.1 0.0029 6.4E-08 69.8 10.0 34 701-735 19-52 (478)
378 PRK08013 oxidoreductase; Provi 97.0 0.00053 1.2E-08 82.6 4.9 35 79-114 3-37 (400)
379 PRK05249 soluble pyridine nucl 97.0 0.00057 1.2E-08 84.1 5.1 35 78-113 4-38 (461)
380 PRK06467 dihydrolipoamide dehy 97.0 0.00058 1.2E-08 83.9 5.1 35 78-113 3-37 (471)
381 PRK07494 2-octaprenyl-6-methox 97.0 0.00061 1.3E-08 81.9 5.2 35 78-113 6-40 (388)
382 PRK06292 dihydrolipoamide dehy 97.0 0.00055 1.2E-08 84.2 4.9 34 701-735 2-35 (460)
383 PLN02463 lycopene beta cyclase 97.0 0.00055 1.2E-08 82.7 4.7 35 78-113 27-61 (447)
384 PRK09126 hypothetical protein; 97.0 0.0005 1.1E-08 82.7 4.4 35 79-114 3-37 (392)
385 PRK05714 2-octaprenyl-3-methyl 97.0 0.0006 1.3E-08 82.4 5.1 34 79-113 2-35 (405)
386 TIGR00031 UDP-GALP_mutase UDP- 97.0 0.00063 1.4E-08 79.9 5.0 34 80-114 2-35 (377)
387 PRK07251 pyridine nucleotide-d 97.0 0.00058 1.3E-08 83.4 4.7 34 79-113 3-36 (438)
388 COG1249 Lpd Pyruvate/2-oxoglut 97.0 0.00059 1.3E-08 81.8 4.6 35 78-113 3-37 (454)
389 PLN02546 glutathione reductase 97.0 0.00056 1.2E-08 85.0 4.6 33 78-111 78-110 (558)
390 PRK06327 dihydrolipoamide dehy 97.0 0.00062 1.3E-08 83.9 4.7 34 701-735 3-36 (475)
391 PRK13748 putative mercuric red 97.0 0.00067 1.5E-08 85.7 4.8 34 701-735 97-130 (561)
392 PLN02576 protoporphyrinogen ox 96.9 0.00069 1.5E-08 84.3 4.8 38 701-739 11-49 (496)
393 TIGR01989 COQ6 Ubiquinone bios 96.9 0.00067 1.5E-08 82.7 4.6 34 703-736 1-37 (437)
394 TIGR02053 MerA mercuric reduct 96.9 0.00077 1.7E-08 82.9 5.1 32 80-112 1-32 (463)
395 PTZ00367 squalene epoxidase; P 96.9 0.00078 1.7E-08 83.7 5.0 35 701-736 32-66 (567)
396 PTZ00153 lipoamide dehydrogena 96.9 0.00069 1.5E-08 85.3 4.6 34 701-735 115-148 (659)
397 PF05834 Lycopene_cycl: Lycope 96.9 0.0008 1.7E-08 80.1 4.9 33 81-114 1-35 (374)
398 PLN02697 lycopene epsilon cycl 96.9 0.00073 1.6E-08 83.0 4.5 41 608-648 372-412 (529)
399 TIGR02053 MerA mercuric reduct 96.9 0.00075 1.6E-08 83.0 4.7 33 703-736 1-33 (463)
400 PRK08849 2-octaprenyl-3-methyl 96.9 0.0008 1.7E-08 80.6 4.6 34 79-113 3-36 (384)
401 PRK07818 dihydrolipoamide dehy 96.9 0.00082 1.8E-08 82.7 4.8 35 78-113 3-37 (466)
402 TIGR03219 salicylate_mono sali 96.9 0.013 2.9E-07 70.9 15.1 32 704-736 2-34 (414)
403 TIGR03143 AhpF_homolog putativ 96.9 0.00079 1.7E-08 84.4 4.5 35 78-113 3-37 (555)
404 PTZ00153 lipoamide dehydrogena 96.9 0.00082 1.8E-08 84.6 4.7 34 78-112 115-148 (659)
405 TIGR03197 MnmC_Cterm tRNA U-34 96.9 0.0044 9.5E-08 74.2 10.7 50 904-965 141-190 (381)
406 PRK14694 putative mercuric red 96.9 0.00088 1.9E-08 82.4 4.8 35 701-736 5-39 (468)
407 TIGR01423 trypano_reduc trypan 96.9 0.00095 2.1E-08 81.9 4.9 34 78-112 2-36 (486)
408 PTZ00052 thioredoxin reductase 96.8 0.00095 2.1E-08 82.5 4.8 33 702-735 5-37 (499)
409 TIGR01790 carotene-cycl lycope 96.8 0.00096 2.1E-08 80.2 4.6 32 81-113 1-32 (388)
410 TIGR01350 lipoamide_DH dihydro 96.8 0.00094 2E-08 82.2 4.5 33 79-112 1-33 (461)
411 PRK07333 2-octaprenyl-6-methox 96.8 0.001 2.3E-08 80.3 4.8 34 79-113 1-36 (403)
412 COG0492 TrxB Thioredoxin reduc 96.8 0.00089 1.9E-08 76.3 3.8 35 78-113 2-37 (305)
413 PRK06327 dihydrolipoamide dehy 96.8 0.00098 2.1E-08 82.1 4.5 34 78-112 3-36 (475)
414 KOG2852|consensus 96.8 0.00096 2.1E-08 71.7 3.7 64 280-348 153-217 (380)
415 PRK08850 2-octaprenyl-6-methox 96.8 0.0011 2.4E-08 80.1 4.9 34 78-112 3-36 (405)
416 PRK05732 2-octaprenyl-6-methox 96.8 0.001 2.3E-08 80.1 4.6 34 78-112 2-38 (395)
417 KOG2311|consensus 96.8 0.0015 3.4E-08 74.6 5.5 35 77-112 26-60 (679)
418 PLN02268 probable polyamine ox 96.8 0.0012 2.7E-08 80.5 5.2 35 704-739 2-36 (435)
419 COG2907 Predicted NAD/FAD-bind 96.8 0.0092 2E-07 66.2 11.1 35 702-738 8-42 (447)
420 TIGR01984 UbiH 2-polyprenyl-6- 96.8 0.0013 2.8E-08 78.9 5.0 33 81-114 1-34 (382)
421 PRK06292 dihydrolipoamide dehy 96.8 0.0011 2.5E-08 81.4 4.6 34 78-112 2-35 (460)
422 KOG0029|consensus 96.8 0.0012 2.6E-08 80.3 4.7 38 78-116 14-51 (501)
423 TIGR01989 COQ6 Ubiquinone bios 96.8 0.0014 2.9E-08 80.0 5.1 34 80-113 1-37 (437)
424 TIGR02733 desat_CrtD C-3',4' d 96.7 0.0013 2.9E-08 81.6 4.9 35 80-115 2-36 (492)
425 TIGR01292 TRX_reduct thioredox 96.7 0.0011 2.5E-08 76.3 4.0 33 80-113 1-33 (300)
426 PTZ00052 thioredoxin reductase 96.7 0.0013 2.8E-08 81.4 4.6 34 78-112 4-37 (499)
427 PTZ00367 squalene epoxidase; P 96.7 0.0015 3.3E-08 81.2 5.1 35 78-113 32-66 (567)
428 PRK13748 putative mercuric red 96.7 0.0013 2.9E-08 83.0 4.7 35 78-113 97-131 (561)
429 TIGR01789 lycopene_cycl lycope 96.7 0.0014 3E-08 77.7 4.6 33 704-736 1-34 (370)
430 PRK14694 putative mercuric red 96.7 0.0013 2.9E-08 80.9 4.4 35 78-113 5-39 (468)
431 PRK08294 phenol 2-monooxygenas 96.7 0.0019 4.1E-08 81.9 6.0 39 698-736 28-66 (634)
432 TIGR01789 lycopene_cycl lycope 96.7 0.0014 3.1E-08 77.6 4.4 33 81-113 1-34 (370)
433 PF13454 NAD_binding_9: FAD-NA 96.6 0.043 9.4E-07 56.4 14.6 31 706-736 1-35 (156)
434 PLN02507 glutathione reductase 96.6 0.0015 3.2E-08 80.8 4.3 33 78-111 24-56 (499)
435 PLN02576 protoporphyrinogen ox 96.6 0.0017 3.8E-08 80.7 4.8 38 78-116 11-49 (496)
436 PRK14727 putative mercuric red 96.6 0.0017 3.7E-08 80.1 4.6 35 701-736 15-49 (479)
437 PRK11883 protoporphyrinogen ox 96.6 0.0017 3.6E-08 79.8 4.5 35 704-739 2-38 (451)
438 PF04820 Trp_halogenase: Trypt 96.6 0.0032 6.9E-08 76.7 6.8 53 277-335 156-208 (454)
439 TIGR00562 proto_IX_ox protopor 96.6 0.0018 4E-08 79.7 4.8 36 702-738 2-41 (462)
440 COG3349 Uncharacterized conser 96.6 0.0018 3.9E-08 76.6 4.2 34 705-739 3-36 (485)
441 COG1231 Monoamine oxidase [Ami 96.6 0.0023 5E-08 74.3 4.8 37 78-115 6-42 (450)
442 COG2907 Predicted NAD/FAD-bind 96.5 0.02 4.4E-07 63.6 11.7 35 79-115 8-42 (447)
443 PF07992 Pyr_redox_2: Pyridine 96.5 0.0025 5.5E-08 68.6 4.9 32 704-736 1-32 (201)
444 PLN02568 polyamine oxidase 96.5 0.0027 5.8E-08 78.8 5.6 39 700-739 3-46 (539)
445 PRK06996 hypothetical protein; 96.5 0.0025 5.4E-08 76.8 5.1 35 78-113 10-48 (398)
446 PLN02268 probable polyamine ox 96.5 0.0024 5.2E-08 78.0 4.9 35 81-116 2-36 (435)
447 PRK08163 salicylate hydroxylas 96.5 0.0022 4.8E-08 77.3 4.5 35 78-113 3-37 (396)
448 TIGR02734 crtI_fam phytoene de 96.5 0.002 4.3E-08 80.3 4.2 55 284-344 228-282 (502)
449 PRK05335 tRNA (uracil-5-)-meth 96.5 0.0022 4.8E-08 75.4 4.3 33 703-736 3-35 (436)
450 PRK08294 phenol 2-monooxygenas 96.4 0.0037 8E-08 79.4 6.2 38 76-113 29-66 (634)
451 COG1252 Ndh NADH dehydrogenase 96.4 0.026 5.6E-07 66.3 12.5 58 900-971 211-268 (405)
452 TIGR01438 TGR thioredoxin and 96.4 0.0027 5.9E-08 78.1 4.6 33 702-735 2-34 (484)
453 PRK07588 hypothetical protein; 96.4 0.0024 5.3E-08 76.7 4.1 32 81-113 2-33 (391)
454 PRK07236 hypothetical protein; 96.4 0.0026 5.6E-08 76.3 4.4 35 78-113 5-39 (386)
455 KOG2614|consensus 96.4 0.0031 6.7E-08 72.2 4.5 34 702-736 2-35 (420)
456 PF13434 K_oxygenase: L-lysine 96.4 0.0027 5.8E-08 74.1 4.2 35 79-113 2-36 (341)
457 PF06100 Strep_67kDa_ant: Stre 96.4 0.11 2.4E-06 61.6 17.2 68 896-964 202-273 (500)
458 PRK14727 putative mercuric red 96.4 0.0032 6.9E-08 77.7 4.8 35 78-113 15-49 (479)
459 PRK10262 thioredoxin reductase 96.4 0.0028 6.2E-08 73.9 4.2 34 701-735 5-38 (321)
460 PRK11883 protoporphyrinogen ox 96.3 0.0029 6.2E-08 77.7 4.3 34 81-115 2-37 (451)
461 PLN02676 polyamine oxidase 96.3 0.0039 8.5E-08 76.7 5.4 38 701-739 25-63 (487)
462 PF07992 Pyr_redox_2: Pyridine 96.3 0.0034 7.4E-08 67.6 4.4 32 81-113 1-32 (201)
463 PRK06753 hypothetical protein; 96.3 0.0029 6.4E-08 75.5 4.2 33 81-114 2-34 (373)
464 TIGR00562 proto_IX_ox protopor 96.3 0.0033 7.1E-08 77.5 4.6 35 80-115 3-41 (462)
465 PRK07233 hypothetical protein; 96.3 0.0035 7.5E-08 76.6 4.6 35 81-116 1-35 (434)
466 PRK13512 coenzyme A disulfide 96.3 0.021 4.7E-07 69.5 11.3 33 704-736 3-36 (438)
467 KOG1335|consensus 96.3 0.0034 7.3E-08 70.3 3.7 35 701-736 38-72 (506)
468 TIGR01438 TGR thioredoxin and 96.3 0.0035 7.6E-08 77.1 4.4 33 79-112 2-34 (484)
469 PRK07846 mycothione reductase; 96.2 0.0039 8.5E-08 76.1 4.6 32 702-736 1-32 (451)
470 TIGR03452 mycothione_red mycot 96.2 0.0037 8E-08 76.4 4.3 31 702-735 2-32 (452)
471 TIGR01372 soxA sarcosine oxida 96.2 0.0072 1.6E-07 80.8 7.3 57 906-971 359-417 (985)
472 PLN02927 antheraxanthin epoxid 96.2 0.0046 9.9E-08 77.5 5.0 36 700-736 79-114 (668)
473 TIGR03197 MnmC_Cterm tRNA U-34 96.2 0.025 5.4E-07 67.7 11.2 52 283-343 143-194 (381)
474 PRK05335 tRNA (uracil-5-)-meth 96.2 0.0038 8.3E-08 73.4 4.0 34 80-114 3-36 (436)
475 PRK10262 thioredoxin reductase 96.2 0.0037 8E-08 72.9 3.9 34 78-112 5-38 (321)
476 TIGR03315 Se_ygfK putative sel 96.1 0.0056 1.2E-07 79.9 5.5 36 701-737 536-571 (1012)
477 PLN02568 polyamine oxidase 96.1 0.006 1.3E-07 75.7 5.3 38 78-116 4-46 (539)
478 PRK07846 mycothione reductase; 96.1 0.0059 1.3E-07 74.6 5.2 31 79-112 1-31 (451)
479 COG1148 HdrA Heterodisulfide r 96.1 0.0059 1.3E-07 70.5 4.7 34 702-736 124-157 (622)
480 TIGR03452 mycothione_red mycot 96.1 0.0058 1.3E-07 74.7 5.1 31 79-112 2-32 (452)
481 PRK12416 protoporphyrinogen ox 96.1 0.0051 1.1E-07 75.8 4.6 36 704-739 3-43 (463)
482 COG1252 Ndh NADH dehydrogenase 96.0 0.067 1.5E-06 62.9 13.2 36 81-116 5-41 (405)
483 PLN02676 polyamine oxidase 96.0 0.0064 1.4E-07 74.8 5.1 38 78-116 25-63 (487)
484 TIGR02731 phytoene_desat phyto 96.0 0.006 1.3E-07 74.9 4.8 35 704-739 1-35 (453)
485 KOG4716|consensus 96.0 0.0053 1.1E-07 67.5 3.7 36 700-736 17-52 (503)
486 COG3349 Uncharacterized conser 96.0 0.0058 1.2E-07 72.5 4.2 34 82-116 3-36 (485)
487 COG3075 GlpB Anaerobic glycero 96.0 0.0061 1.3E-07 67.1 4.0 34 79-113 2-35 (421)
488 PRK05868 hypothetical protein; 95.9 0.006 1.3E-07 72.7 4.2 32 81-113 3-34 (372)
489 TIGR00137 gid_trmFO tRNA:m(5)U 95.9 0.0064 1.4E-07 72.1 4.3 33 703-736 1-33 (433)
490 TIGR03140 AhpF alkyl hydropero 95.9 0.0064 1.4E-07 75.7 4.2 33 78-111 211-243 (515)
491 PRK15317 alkyl hydroperoxide r 95.9 0.0063 1.4E-07 75.8 4.2 34 78-112 210-243 (517)
492 TIGR03378 glycerol3P_GlpB glyc 95.9 0.0064 1.4E-07 71.8 4.0 59 284-346 272-330 (419)
493 PF00996 GDI: GDP dissociation 95.9 0.0083 1.8E-07 71.4 4.8 41 699-740 1-41 (438)
494 KOG4716|consensus 95.9 0.0066 1.4E-07 66.7 3.6 34 78-112 18-51 (503)
495 PRK12831 putative oxidoreducta 95.9 0.0092 2E-07 73.0 5.4 36 701-737 139-174 (464)
496 TIGR01372 soxA sarcosine oxida 95.8 0.0086 1.9E-07 80.1 5.3 60 285-348 361-421 (985)
497 PLN02927 antheraxanthin epoxid 95.8 0.0081 1.8E-07 75.3 4.7 36 77-113 79-114 (668)
498 KOG0405|consensus 95.8 0.01 2.2E-07 65.7 4.7 34 78-112 19-52 (478)
499 PRK09564 coenzyme A disulfide 95.8 0.042 9.2E-07 67.3 10.8 33 704-736 2-35 (444)
500 KOG2614|consensus 95.7 0.0099 2.2E-07 68.1 4.2 33 79-112 2-34 (420)
No 1
>KOG1238|consensus
Probab=100.00 E-value=3e-104 Score=920.62 Aligned_cols=549 Identities=53% Similarity=0.891 Sum_probs=501.5
Q ss_pred CCCCCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCCCCCCCcchhhHHhhhcCCCCCccccccCcccccccCCCee
Q psy1043 75 PLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDISDVPVLAAYLQLSGLDWSYKTEPSSTSCLAMEHNRC 154 (1306)
Q Consensus 75 ~~~~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 154 (1306)
+...+|||||||||+|||++|.||||++.++|||||||+.++...++|.+...++.+.++|.|.++|+...|+++.+++|
T Consensus 53 ~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c 132 (623)
T KOG1238|consen 53 ELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRC 132 (623)
T ss_pred ccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCce
Confidence 34578999999999999999999999999999999999999888899988889999999999999999999999999999
Q ss_pred eecCcccccCcccccceEEecCChhhHHHHHhcCCCCCChhhHHHHHHHhccCCCCCCCCCCCCCCCCceeeecCCCccH
Q psy1043 155 NWPRGKVVGGSSVLNYMLYVRGNRNDYNHWESLGNPGWGAAEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTP 234 (1306)
Q Consensus 155 ~~~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~~~~y~~~~e~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 234 (1306)
.|+|||+|||+|++|+|+|.|++..|||.|++.|+++|+|+++++||+++|+...+.....+||+..|++.+....+..+
T Consensus 133 ~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~~~~ 212 (623)
T KOG1238|consen 133 YWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVYPNN 212 (623)
T ss_pred ecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccccccCc
Confidence 99999999999999999999999999999999999999999999999999999888888888999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCccceeeecccccCCcccchhhhccccccC-CCCeEEEeccEEEEEEecCCCCeEEEE
Q psy1043 235 LAEAFVRGGEELGYENRDINGEYQTGFMVAQGTVRNGARCSTSKAFLQPVKT-RPNLHISLHSHVTKVLIDPKNRMAIGV 313 (1306)
Q Consensus 235 ~~~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~-~~nl~I~~~~~V~~I~~d~~~~~~~GV 313 (1306)
+...|.++..++|.+..|+||..+.|+...+.+.++|.|+++..+|+.++.. |+|++|..++.|++|++|..++++.||
T Consensus 213 ~~~~~~~ag~e~G~~~~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv 292 (623)
T KOG1238|consen 213 LFTAFHRAGTEIGGSIFDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGV 292 (623)
T ss_pred hhhHhHHhHHhcCCCccCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCCceEEEE
Confidence 9999999999999999999999999999999999999999999999999887 899999999999999999888899999
Q ss_pred EEEeC-CeEEEEEEcceEEEccCCCCcHHHHHHhCCCCcccccccCCCceeccc-cccccccccCCceEEEEecCCcccc
Q psy1043 314 EFVKN-HQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDLK-VGYNLQDHVGLGGFTFLINQPISLV 391 (1306)
Q Consensus 314 ~~~~~-g~~~~v~A~k~VVLaAGai~Sp~LLl~SGiG~~~~L~~~gI~~~~dlp-VG~nL~dH~~~~~~~~~~~~~~~~~ 391 (1306)
++.++ ++.++++|+||||||||||+||||||+|||||++||++.|||++.||| ||+|||||+...++.+..+ +....
T Consensus 293 ~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~~~~~~~~-~~~~~ 371 (623)
T KOG1238|consen 293 EFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNPGFVFSTN-PVELS 371 (623)
T ss_pred EEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccceeeecCC-Ccccc
Confidence 99988 799999999999999999999999999999999999999999999999 9999999998877665544 32222
Q ss_pred hhhhhhHHHHHhhhhcCCCCccccCCcchhhHHHHHHHHHcCCCCcccCCcceEEEEeecCCCC---CCch---------
Q psy1043 392 QDRLESVQSVLNYAMMGNGPLTVMGGDRLESVQSVLNYAMMGNGPLTVMGGVEGLAFVNTKYAS---DGGN--------- 459 (1306)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~---~~~~--------- 459 (1306)
..++. ....+.+|+..+.|++.+.+ .+.++|+++.... +++.
T Consensus 372 ~~~~~-------------------------~~~~~~~yl~~~~G~~~~~~-~e~~~f~~t~~~~~~~~~PD~~~~~~~~~ 425 (623)
T KOG1238|consen 372 LIRLV-------------------------GITTVGQYLEGGSGPLASPG-VETLGFINTVSSNLSLDWPDIELHFVAGS 425 (623)
T ss_pred ccccc-------------------------cchHHHHHHHcCCCCcccCc-ceeeEEeccccccCcCCCCCeeEEecccc
Confidence 11111 23556789999999998877 8899999987653 1110
Q ss_pred ----hhHhhcCCchhhhhcccCCcCCCCeEEEEeecCCcCceeEEEeccCCCCCCCeeecCCCCChhhHHHHHHHHHHHH
Q psy1043 460 ----QIRKAHGLREDFYDEVYGPINNKDVWSAIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIEGVKIIL 535 (1306)
Q Consensus 460 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~srg~v~l~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~ 535 (1306)
.+........++++.++........+.+++.+++|.|||+|.|+++||++.|+|++||+.+|+|++.++++++.+.
T Consensus 426 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~ 505 (623)
T KOG1238|consen 426 LSSDGLTALRKALGEIYQALFGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTII 505 (623)
T ss_pred ccccchhhhhhhcchHHHHhhhhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHH
Confidence 0011111122566667777766778999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcchhhcccccccCCCCCCCCCCCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCcEEee
Q psy1043 536 ELSKTRSFRQYESRFHNIPFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVID 615 (1306)
Q Consensus 536 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~H~~GT~rMG~~~d~~sVVD~~~rV~gv~NL~V~D 615 (1306)
++.++.+|++++.++...++|+|....+.+|+||+|++|+.+.|.||++|||+|||+.|+++|||+++||||++||||+|
T Consensus 506 ~l~~s~af~~~~~r~~~~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVD 585 (623)
T KOG1238|consen 506 RLSNSKAFQRFGARLWKKPVPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVD 585 (623)
T ss_pred HHHcCHHHHHhcchhccccCCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCccchHHHHHHHHHHHHHHHHhHhhhh
Q psy1043 616 ASIMPTIVSGNTNAPVIMIGEKGSDMIKQDWRKYI 650 (1306)
Q Consensus 616 aSv~Pt~~~~NP~lTi~alAeraAd~I~~~~~~~~ 650 (1306)
|||||.++++||++|+||||||+||+|+++|....
T Consensus 586 aSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~~ 620 (623)
T KOG1238|consen 586 ASIMPESPSGNPNAPVMMIGEKAADMIKEEWLANK 620 (623)
T ss_pred ccccCCCCCCCccHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999999997644
No 2
>KOG1238|consensus
Probab=100.00 E-value=4.7e-85 Score=760.20 Aligned_cols=506 Identities=50% Similarity=0.849 Sum_probs=459.6
Q ss_pred cccccCCCCCCCcCCCCCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCCCCCCCCCCCCCCccccCCCCCCCCccc
Q psy1043 684 VEDLEHLIPDVPLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESPLSDIPCTYPALQTSPLDWQYKTE 763 (1306)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 763 (1306)
..++...+......+...+|||||||||.|||++|.+|+|++.|+|||||||+.+....++|.....++.+.++|.|.++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~ 118 (623)
T KOG1238|consen 39 LVDPESRPSDATGSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTE 118 (623)
T ss_pred ccCcccccccccccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCc
Confidence 44455555555555667899999999999999999999999899999999999988888999778888999999999999
Q ss_pred cCccccccCCCCeeecCCcceecchhHhccceeecCChhhHHHHHHcCCCCCCcccchHHHHHhhhccCCCCCCCCCCCC
Q psy1043 764 PNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEAAGNEGWSYRDTLPYFIKSESVNISSLVDSPYHGT 843 (1306)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~g~~lGG~S~~~~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~ 843 (1306)
|+...|+++.+..|.|+|||+|||+|.+|+|+|.|+++.||+.|++.++.+|+|++++|||+++|+...+.....++|+.
T Consensus 119 Ps~~ac~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~ 198 (623)
T KOG1238|consen 119 PSQHACLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGA 198 (623)
T ss_pred cChhhhhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888889999
Q ss_pred CCCcccccCCCCChHHHHHHHHHHHcCCCCCCCCCCCccceeeccCCcCCCcccchhHhhhhhhhc-CCCcEEEecceEE
Q psy1043 844 QGPLSVEEFRYYSPVTEAFVESAGELGYEVGDINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIA-RPNLHVSLHSHAY 922 (1306)
Q Consensus 844 ~g~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~L~~~~~-~~g~~i~~~~~V~ 922 (1306)
.|++.++...+..+....+.++..++|....|++|..+.|+...+.+.++|.|+++.++|++++.. |+|+++..++.|+
T Consensus 199 ~g~~~ve~~~~~~~~~~~~~~ag~e~G~~~~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vt 278 (623)
T KOG1238|consen 199 GGPLLVEAGVYPNNLFTAFHRAGTEIGGSIFDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVT 278 (623)
T ss_pred CCcceeccccccCchhhHhHHhHHhcCCCccCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEE
Confidence 999999999999999999999999999888999999999999999999999999999999999887 8899999999999
Q ss_pred EEEecCCCCCCceEEEEE-EeC-CeeeeEEEEeCcEEEEcCCCcchHHHhcCcC--------------------------
Q psy1043 923 RVHFEPGPDGQMRATGVV-VKK-GRKDPVLVRARREVILSAGAIGSPQVYLIPN-------------------------- 974 (1306)
Q Consensus 923 ~I~~~~~~~~~~rv~GV~-~~~-G~~~~~~v~A~k~VVLAAGai~sp~LLl~p~-------------------------- 974 (1306)
+|.+|+ .+.++.||+ ..+ |+.+ +|+|+||||||||+|+||||||+|.
T Consensus 279 rvl~D~---~~~~a~gv~~~~~~~~~~--~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLq 353 (623)
T KOG1238|consen 279 RVLIDP---AGKRAKGVEFVRDGGKEH--TVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQ 353 (623)
T ss_pred EEEEcC---CCceEEEEEEEecCceee--eecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccc
Confidence 999997 458999999 667 6877 9999999999999999999999943
Q ss_pred CCCcc---eEecC-------------------------------------------CCCCCCcceeeccccccCCCCCcc
Q psy1043 975 EHTHY---QVDLT-------------------------------------------DGPEWPDIQLFFASAADNDDGGLF 1008 (1306)
Q Consensus 975 dh~~~---~~~~~-------------------------------------------~~~~~p~~~~~~~~~~~~~~~~~~ 1008 (1306)
||+.. .|..+ ....+||+++++.......+....
T Consensus 354 DH~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~ 433 (623)
T KOG1238|consen 354 DHPMNPGFVFSTNPVELSLIRLVGITTVGQYLEGGSGPLASPGVETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTA 433 (623)
T ss_pred cccccceeeecCCCccccccccccchHHHHHHHcCCCCcccCcceeeEEeccccccCcCCCCCeeEEeccccccccchhh
Confidence 66654 11110 123578888777766666655433
Q ss_pred ccccCCCccccccccccccccCCcEEEEeeecccCCCcEEEEccCCCCCCceeecCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy1043 1009 NKRNNGLKDDYYAGVFEPILYRDSITLAPLLLRPRSRGRIKLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKIGYAITRT 1088 (1306)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~~~~~ 1088 (1306)
.....+ ++|++++....+.+.+.+++.+++|+|+|+|.|+++||.+.|.|++||+.+|+|++.++++++.+.++.++
T Consensus 434 ~~~~~~---~~y~~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s 510 (623)
T KOG1238|consen 434 LRKALG---EIYQALFGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNS 510 (623)
T ss_pred hhhhcc---hHHHHhhhhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 333333 67777777777778899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccccccCCCCCCCCCCCHHHHHHHHhcccCcccccccccccCCCCCCCCccCCCCcEeccCCcEEecCCCCC
Q psy1043 1089 KAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCKMGPDSDPGAVVDPRLRVRGVAGLRVIDASIMP 1168 (1306)
Q Consensus 1089 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~GtcrMG~~~~~~sVVD~~~rV~g~~nL~V~D~Sv~P 1168 (1306)
++|++++..++..++|+|+...+.+|+||+|++|.++.++||++|||+||+..|+++|||+++||||++||||+|+||||
T Consensus 511 ~af~~~~~r~~~~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP 590 (623)
T KOG1238|consen 511 KAFQRFGARLWKKPVPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMP 590 (623)
T ss_pred HHHHHhcchhccccCCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHHhCCC
Q psy1043 1169 TIVSGNTNAPTIMIAEKACDLIKEDWGVM 1197 (1306)
Q Consensus 1169 ~~~~~Np~lTi~ala~raAd~I~~~~~~~ 1197 (1306)
.+|++||++|+||||||+||+||++|...
T Consensus 591 ~~psgN~nA~v~MIgek~ad~Ik~~~~~~ 619 (623)
T KOG1238|consen 591 ESPSGNPNAPVMMIGEKAADMIKEEWLAN 619 (623)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999998754
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=1e-76 Score=737.31 Aligned_cols=525 Identities=41% Similarity=0.648 Sum_probs=407.8
Q ss_pred CCCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCCC---CCCCcchhhHHh-hhcCCCCCccccccCcccccccCCC
Q psy1043 77 YPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDE---TDISDVPVLAAY-LQLSGLDWSYKTEPSSTSCLAMEHN 152 (1306)
Q Consensus 77 ~~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~---~~~~~~p~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~ 152 (1306)
..+|||||||||++|+++|.||||++|++|||||+|+.. ......|..... +....++|.|.+.|+.. ..++
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~~ 78 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNNR 78 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCCC
Confidence 357999999999999999999999779999999999753 222334443322 23446789888877764 3567
Q ss_pred eeeecCcccccCcccccceEEecCChhhHHHHHhc-CCCCCChhhHHHHHHHhccCCCCCCCCCCCCCCCCceeeecC-C
Q psy1043 153 RCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHWESL-GNPGWGAAEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEA-P 230 (1306)
Q Consensus 153 ~~~~~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~~~~y~~~~e~~~~~~~~~~~~~~~~g~l~~~~~-~ 230 (1306)
.+.+.+|++|||+|.+|+|+|.|+.+.||+.|+.. |+++|+|++++|||+++|+... ....+|+..|++.+... .
T Consensus 79 ~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~---~~~~~~g~~gp~~~~~~~~ 155 (560)
T PRK02106 79 RMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDG---GEDDYRGGDGPLSVTRGKP 155 (560)
T ss_pred eeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCC---CCccccCCCCCEEEeCCCC
Confidence 88999999999999999999999999999999986 8899999999999999998862 23456788899988765 5
Q ss_pred CccHHHHHHHHHHHHcCCC-CCCCCCCCccceeeecccccCCcccchhhhccccccCCCCeEEEeccEEEEEEecCCCCe
Q psy1043 231 WHTPLAEAFVRGGEELGYE-NRDINGEYQTGFMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNRM 309 (1306)
Q Consensus 231 ~~~~~~~~~~~~~~~~G~~-~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~nl~I~~~~~V~~I~~d~~~~~ 309 (1306)
...+..+.|.++++++|++ ..+.++....|++.+...+.+|.|.++..+||.++.+++|++|+++|.|++|+++++ +
T Consensus 156 ~~~~~~~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~~--~ 233 (560)
T PRK02106 156 GTNPLFQAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGK--R 233 (560)
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCCCCCCCceeEEEeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeCC--e
Confidence 5678889999999999998 556777777888888778889999999999999888899999999999999999854 9
Q ss_pred EEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHHhCCCCcccccccCCCceeccc-cccccccccCCceEEEEecCCc
Q psy1043 310 AIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDLK-VGYNLQDHVGLGGFTFLINQPI 388 (1306)
Q Consensus 310 ~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~SGiG~~~~L~~~gI~~~~dlp-VG~nL~dH~~~~~~~~~~~~~~ 388 (1306)
++||++...+...++.++|+||||||+|+||+|||+|||||+++|+++||+++.||| ||+|||||+... +.+.++++.
T Consensus 234 a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~-~~~~~~~~~ 312 (560)
T PRK02106 234 AVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVY-IQYECKQPV 312 (560)
T ss_pred EEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccce-EEEEeCCCc
Confidence 999999876666667777889999999999999999999999999999999999999 999999998765 467666543
Q ss_pred ccchhhhhhHHHHHhhhhcCCCCccccCCcchhhHHHHHHHHHcCCCCcccCCcceEEEEeecCCCCCCchhhHhhcCCc
Q psy1043 389 SLVQDRLESVQSVLNYAMMGNGPLTVMGGDRLESVQSVLNYAMMGNGPLTVMGGVEGLAFVNTKYASDGGNQIRKAHGLR 468 (1306)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1306)
.... ..... .......+|...+.|++.... ....+|.........+. +. ..+.
T Consensus 313 ~~~~-~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~p~-~~--~~~~ 365 (560)
T PRK02106 313 SLYP-ALKWW----------------------NKPKIGAEWLFTGTGLGASNH-FEAGGFIRSRAGVDWPN-IQ--YHFL 365 (560)
T ss_pred cccc-ccchh----------------------hhhHHHHHHHhcCCCCccccc-cceeeEEecCCCCCCCC-eE--EEEe
Confidence 2111 00000 001112245455566654321 22223333211100000 00 0000
Q ss_pred hhhhhcccCCcCCCCeEEEEeecCCcCceeEEEeccCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHHcCcchhhccc
Q psy1043 469 EDFYDEVYGPINNKDVWSAIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIEGVKIILELSKTRSFRQYES 548 (1306)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~p~srg~v~l~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~ 548 (1306)
...+............+.+...+++|.|+|+|+|+++||++.|.|+++|+.++.|++.+.++++.+++++++.+++.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~ 445 (560)
T PRK02106 366 PVAIRYDGSNAVKGHGFQAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRG 445 (560)
T ss_pred eccccccCCCCCCCCeEEEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccc
Confidence 00000000000011245555677899999999999999999999999999999999999999999999999888776533
Q ss_pred ccccCCCCCCCCCCCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCcEEeeccCCCCCCCccch
Q psy1043 549 RFHNIPFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTN 628 (1306)
Q Consensus 549 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~H~~GT~rMG~~~d~~sVVD~~~rV~gv~NL~V~DaSv~Pt~~~~NP~ 628 (1306)
. ...|++ ...++++|+++++....+.+|++||||||++ ++||||++|||||++||||+|+||||+++++||+
T Consensus 446 ~---~~~p~~---~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~d--~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~ 517 (560)
T PRK02106 446 R---EISPGA---DVQTDEEIDAFVREHAETAYHPSCTCKMGTD--PMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLN 517 (560)
T ss_pred c---ccCCCc---ccCCHHHHHHHHHhccCcCcccCCCeecCCC--CCeeECCCCEEeccCCeEEeeccccCCCCCcchH
Confidence 2 122332 3468899999999999999999999999973 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhH
Q psy1043 629 APVIMIGEKGSDMIKQDW 646 (1306)
Q Consensus 629 lTi~alAeraAd~I~~~~ 646 (1306)
+|+||||||+||+|++++
T Consensus 518 ~ti~aiaeraAd~I~~~~ 535 (560)
T PRK02106 518 APTIMIAEKAADLIRGRT 535 (560)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 999999999999999876
No 4
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=6.8e-76 Score=726.36 Aligned_cols=522 Identities=38% Similarity=0.609 Sum_probs=403.8
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCCCC---CCCcchhhHHh-hhcCCCCCccccccCcccccccCCCeeee
Q psy1043 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDET---DISDVPVLAAY-LQLSGLDWSYKTEPSSTSCLAMEHNRCNW 156 (1306)
Q Consensus 81 DvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~~---~~~~~p~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 156 (1306)
||||||||++|+++|.||||+++.+|||||+|+... .....|..... +....++|.|.+.|+.. +.++.+.|
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~ 76 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVGH 76 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEee
Confidence 899999999999999999995347999999997532 22334443222 22345689988887764 45678999
Q ss_pred cCcccccCcccccceEEecCChhhHHHHHh-cCCCCCChhhHHHHHHHhccCCCCCCCCCCCCCCCCceeeecCCCccHH
Q psy1043 157 PRGKVVGGSSVLNYMLYVRGNRNDYNHWES-LGNPGWGAAEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPL 235 (1306)
Q Consensus 157 ~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~-~g~~~w~~~~~~~y~~~~e~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 235 (1306)
++|++|||+|.+|+|+|.|+++.||+.|+. .|.++|+|++++|||+++|..... ..++|+..|++.+..++...+.
T Consensus 77 ~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~---~~~~~g~~G~~~v~~~~~~~~~ 153 (532)
T TIGR01810 77 ARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG---EKPYRGHDGPIKVRRGPADNPL 153 (532)
T ss_pred ecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC---CcccCCCCCCEEEecCCCCCHH
Confidence 999999999999999999999999999988 788999999999999999988642 2367899999999888778888
Q ss_pred HHHHHHHHHHcCCC-CCCCCCCCccceeeecccccCCcccchhhhccccccCCCCeEEEeccEEEEEEecCCCCeEEEEE
Q psy1043 236 AEAFVRGGEELGYE-NRDINGEYQTGFMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVE 314 (1306)
Q Consensus 236 ~~~~~~~~~~~G~~-~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~ 314 (1306)
.+.+.++++++|++ ..+.++....|++.+...+.+|.|.++..+||.++.+++|++|++++.|++|+++++ +++||+
T Consensus 154 ~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~--ra~GV~ 231 (532)
T TIGR01810 154 FQAFIEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN--RATGVE 231 (532)
T ss_pred HHHHHHHHHHcCCCccCCCCCCCccceEEEEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecCC--eEEEEE
Confidence 99999999999998 456666667788877777889999999999998887899999999999999999854 999999
Q ss_pred EEeCCeEEEEEEcceEEEccCCCCcHHHHHHhCCCCcccccccCCCceeccc-cccccccccCCceEEEEecCCcccchh
Q psy1043 315 FVKNHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDLK-VGYNLQDHVGLGGFTFLINQPISLVQD 393 (1306)
Q Consensus 315 ~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~SGiG~~~~L~~~gI~~~~dlp-VG~nL~dH~~~~~~~~~~~~~~~~~~~ 393 (1306)
+..++...++.++|+||||||+|+||+|||+|||||+++|+++||+++.|+| ||+|||||+... +.+.++.+.....
T Consensus 232 ~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~-~~~~~~~~~~~~~- 309 (532)
T TIGR01810 232 FKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVY-VQHACKQPVSLYP- 309 (532)
T ss_pred EEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccce-eEEEecCCccccc-
Confidence 9876655667677889999999999999999999999999999999999999 999999998654 4666655322110
Q ss_pred hhhhHHHHHhhhhcCCCCccccCCcchhhHHHHHHHHHcCCCCcccCCcceEEEEeecCCCCCCchhhHhhcCCchhhhh
Q psy1043 394 RLESVQSVLNYAMMGNGPLTVMGGDRLESVQSVLNYAMMGNGPLTVMGGVEGLAFVNTKYASDGGNQIRKAHGLREDFYD 473 (1306)
Q Consensus 394 ~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1306)
. ... ........+|.....|++... .....+|.........+ .+...+ ......
T Consensus 310 ~-~~~---------------------~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~p-~~~~~~-~~~~~~- 363 (532)
T TIGR01810 310 S-LNW---------------------LKQPFIGAQWLFGRKGAGASN-HFEGGGFVRSNDDVDYP-NIQYHF-LPVAIR- 363 (532)
T ss_pred c-cch---------------------hhhhHHHHHHHhcCCCCcccc-ccceeEEEecCCCCCCC-CeEEEE-Eeeeec-
Confidence 0 000 000111223444455554321 12223333321100000 000000 000000
Q ss_pred cccCCcCCCCeEEEEeecCCcCceeEEEeccCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHHcCcchhhcccccccC
Q psy1043 474 EVYGPINNKDVWSAIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIEGVKIILELSKTRSFRQYESRFHNI 553 (1306)
Q Consensus 474 ~~~~~~~~~~~~~~~~~l~~p~srg~v~l~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 553 (1306)
...........+.+...+++|.|||+|+|+++||++.|.|+++|+.++.|++.++++++.+++++++.++..+... +
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~---~ 440 (532)
T TIGR01810 364 YDGTKAPKAHGFQVHVGPMYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGG---E 440 (532)
T ss_pred cCCCCCCCCCcEEEEEeecCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhcccc---c
Confidence 0000000112345556778999999999999999999999999999999999999999999999998887765322 1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCcEEeeccCCCCCCCccchHHHHH
Q psy1043 554 PFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIM 633 (1306)
Q Consensus 554 ~~~~~~~~~~~~d~~~~~~~~~~~~t~~H~~GT~rMG~~~d~~sVVD~~~rV~gv~NL~V~DaSv~Pt~~~~NP~lTi~a 633 (1306)
..|+ ....+|++|++|++....+.+|++||||||++++++||||++|||||++||||||+||||+++++||++|+||
T Consensus 441 ~~p~---~~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~a 517 (532)
T TIGR01810 441 ISPG---PEVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIM 517 (532)
T ss_pred cCCC---CCCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHH
Confidence 2222 2357899999999999999999999999998555789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy1043 634 IGEKGSDMIKQD 645 (1306)
Q Consensus 634 lAeraAd~I~~~ 645 (1306)
||||+||+|+++
T Consensus 518 iaeraAd~I~~~ 529 (532)
T TIGR01810 518 MGEKAADIIRGK 529 (532)
T ss_pred HHHHHHHHHhcc
Confidence 999999999975
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-70 Score=665.86 Aligned_cols=525 Identities=36% Similarity=0.594 Sum_probs=411.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCCCCC-CCcchhhHHhhhcC-CCCCccccccCcccccccCCCe
Q psy1043 76 LYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETD-ISDVPVLAAYLQLS-GLDWSYKTEPSSTSCLAMEHNR 153 (1306)
Q Consensus 76 ~~~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~~~-~~~~p~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~ 153 (1306)
+..+|||||||||++||++|+|||+ +|.+|||||+|+.... ...+|......... ..+|.|.++++. .+.++.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~-~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~----~~~~r~ 78 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP----HLRGRE 78 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcC-CCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCccc----CCCCcc
Confidence 3468999999999999999999995 9999999999986443 44455555555444 889999999888 368889
Q ss_pred eeecCcccccCcccccceEEecCChhhHHHHHhc-CCCCCChhhHHHHHHHhccCCCCCCCC-CCCCCCCCceeeecCCC
Q psy1043 154 CNWPRGKVVGGSSVLNYMLYVRGNRNDYNHWESL-GNPGWGAAEALYYFKKSEDNRNQYLAE-TPYHNSGGYLTVQEAPW 231 (1306)
Q Consensus 154 ~~~~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~~~~y~~~~e~~~~~~~~~-~~~~~~~g~l~~~~~~~ 231 (1306)
+.|++|++|||+|.+|+|+|+|+++.||+.|... |.++|.|+|++|||+++|+.......+ ...++..|++.+.....
T Consensus 79 ~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~ 158 (542)
T COG2303 79 LAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRS 158 (542)
T ss_pred ccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCC
Confidence 9999999999999999999999999999999874 779999999999999999976543222 45789999999888766
Q ss_pred ccHHHHHHHHHHHHcCCC-CCCCCCCCccceeeecccccCCcccchhhhccccccCCCCeEEEeccEEEEEEecCCCCeE
Q psy1043 232 HTPLAEAFVRGGEELGYE-NRDINGEYQTGFMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNRMA 310 (1306)
Q Consensus 232 ~~~~~~~~~~~~~~~G~~-~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~nl~I~~~~~V~~I~~d~~~~~~ 310 (1306)
..++.+.|.++++++|++ ..++++..+.|++.++.++.+|.|+++..+||.++.+++|++|++++.|++|+++++ ++
T Consensus 159 ~~~~~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~--r~ 236 (542)
T COG2303 159 PNPIARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD--RA 236 (542)
T ss_pred chHHHHHHHHHHHHcCCCcCcccccCCCCCcccceeeccCCeEeechhhcchhHhcCCceEEecCCEEEEEEEECC--ee
Confidence 789999999999999999 667888888888888888889999999999999999999999999999999999987 99
Q ss_pred EEEEEEeCCe--EEEEEEcceEEEccCCCCcHHHHHHhCCCCcccccccCCCceeccc-cccccccccCCceEEEEecCC
Q psy1043 311 IGVEFVKNHQ--RHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDLK-VGYNLQDHVGLGGFTFLINQP 387 (1306)
Q Consensus 311 ~GV~~~~~g~--~~~v~A~k~VVLaAGai~Sp~LLl~SGiG~~~~L~~~gI~~~~dlp-VG~nL~dH~~~~~~~~~~~~~ 387 (1306)
+||++...+. .....+.++||||||+|+||+|||+||||+.+.+...||.++.++| ||+|||||+.... .+..+.+
T Consensus 237 ~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~~-~~~~~~~ 315 (542)
T COG2303 237 VGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIYV-AFEATEP 315 (542)
T ss_pred EEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhhh-heeccCc
Confidence 9999986443 3556677889999999999999999999999999999999999999 9999999976554 4444443
Q ss_pred cccchhhhhhHHHHHhhhhcCCCCccccCCcchhhHHHHHHHHHcCCCCcccCCcceEEEEeecCCCCCCchhhHhhcCC
Q psy1043 388 ISLVQDRLESVQSVLNYAMMGNGPLTVMGGDRLESVQSVLNYAMMGNGPLTVMGGVEGLAFVNTKYASDGGNQIRKAHGL 467 (1306)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1306)
..... ... ... .......|...+.|+...... +.. |.........+. +..++..
T Consensus 316 ~~~~~---~~~-------------~~~-------~~~~~~~~~~~~~G~~~~~~~-~~g-f~~~~~~~~~p~-~~~~~~~ 369 (542)
T COG2303 316 TNDSV---LSL-------------FSK-------LGIGADRYLLTRDGPGATNHF-EGG-FVRSGPAGEYPD-GQYHFAP 369 (542)
T ss_pred ccccc---ccc-------------ccc-------ccccceeEEeecCCCcccccc-ccc-ccccCccccCCC-ccccccc
Confidence 31000 000 000 000012233345555442211 111 333221111110 0000000
Q ss_pred chhhhhcccCCcCCCCeEEEEeecCCcCceeEEEeccCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHHcCcchhhcc
Q psy1043 468 REDFYDEVYGPINNKDVWSAIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIEGVKIILELSKTRSFRQYE 547 (1306)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~p~srg~v~l~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ 547 (1306)
. ..... .......+++.....+|.|+|.|.+++.||...|.|+++|..++.|+..+.++++..+++..+..+..+.
T Consensus 370 ~--~~~~~--~~~~~~~~~~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~ 445 (542)
T COG2303 370 L--PLAIR--AAGAEHGFTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARR 445 (542)
T ss_pred c--ccccc--ccccCCccEEeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhH
Confidence 0 00000 1223456778888999999999999999999999999999999999999999999999999866555432
Q ss_pred cccccCCCCCCCCCCCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCcEEeeccCCCCCCCccc
Q psy1043 548 SRFHNIPFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNT 627 (1306)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~H~~GT~rMG~~~d~~sVVD~~~rV~gv~NL~V~DaSv~Pt~~~~NP 627 (1306)
.. +..|+ ....+++++..+++....+.+|++||||||.|+ .++|+|++|||||++||||+||||||+++++||
T Consensus 446 ~~---e~~~~---~~~~~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp-~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np 518 (542)
T COG2303 446 KA---ELAPG---PRVTTDEDISAAIRFLARTAYHPMGTCRMGSDP-AAVVDDPYLRVHGLENLRVVDASVMPTSTGVNP 518 (542)
T ss_pred HH---hhcCC---CccccHHHHHHHHHhccCccccccccccCCCCc-hhhccccccccccCCCeEEeCcccCcCccCCCc
Confidence 21 12222 345678889999999999999999999999655 345666999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHh
Q psy1043 628 NAPVIMIGEKGSDMIKQD 645 (1306)
Q Consensus 628 ~lTi~alAeraAd~I~~~ 645 (1306)
++||+|||||+||+|+++
T Consensus 519 ~~ti~ala~raA~~I~~~ 536 (542)
T COG2303 519 NLTIIALAERAADHILGD 536 (542)
T ss_pred cHhHHHHHHHHHHHHhhc
Confidence 999999999999999983
No 6
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=1e-67 Score=647.74 Aligned_cols=506 Identities=25% Similarity=0.331 Sum_probs=350.3
Q ss_pred CCCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCCCCCCCcchhhHHhhhcCCCCCccccccCcccccccCCCeeee
Q psy1043 77 YPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDISDVPVLAAYLQLSGLDWSYKTEPSSTSCLAMEHNRCNW 156 (1306)
Q Consensus 77 ~~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 156 (1306)
..+|||||||+|++||++|.+|++ +.+|||||+|+.+.....+... ..+.....+|.+.+.++.. ..++.+.+
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~-~~~~~~~~d~~~~~~~q~~----~~~~~~~~ 125 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFL-ENFHIGLADTSPTSASQAF----ISTDGVIN 125 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhhH-HhhCCcccccCCccccccc----cCCCceec
Confidence 357999999999999999999999 4899999999854222222221 1233445689998877753 35678899
Q ss_pred cCcccccCcccccceEEecCChhhHHHHHhcCCCCCChhhHHHHHHHhccCCCCCCCCCCCCCCCCceeeecCCCccHHH
Q psy1043 157 PRGKVVGGSSVLNYMLYVRGNRNDYNHWESLGNPGWGAAEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPLA 236 (1306)
Q Consensus 157 ~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~~~~y~~~~e~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 236 (1306)
+|||+|||+|++|+|+|.|+++.||+. .+|+|+++.+||++.|+... ..+...+..
T Consensus 126 ~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~------------------~~~~~~~~~ 181 (587)
T PLN02785 126 ARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIV------------------HWPKVAPWQ 181 (587)
T ss_pred cccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhcccc------------------cCCCcChHH
Confidence 999999999999999999999999953 57999999999999987531 111235667
Q ss_pred HHHHHHHHHcCCCCCCCCCCCcccee--eecccc--cCCcccchhhhccccccCCCCeEEEeccEEEEEEecCCC--CeE
Q psy1043 237 EAFVRGGEELGYENRDINGEYQTGFM--VAQGTV--RNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKN--RMA 310 (1306)
Q Consensus 237 ~~~~~~~~~~G~~~~~~~~~~~~g~~--~~~~~~--~~g~r~s~~~~~l~~~~~~~nl~I~~~~~V~~I~~d~~~--~~~ 310 (1306)
..+.+++.++|++. +++....+.. ....++ ..|.|.+++. ++ +.++++|++|++++.|++|++++++ .++
T Consensus 182 ~~~~~a~~e~G~~~--~n~~~~d~~~G~~~g~~i~~~~g~R~saa~-l~-~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra 257 (587)
T PLN02785 182 AALRDSLLEVGVSP--FNGFTYDHVYGTKVGGTIFDEFGRRHTAAE-LL-AAGNPNKLRVLLHATVQKIVFDTSGKRPRA 257 (587)
T ss_pred HHHHHHHHHcCCCc--cCCCCCCCccceeeeEEEeCCCCEEcCHHH-HH-hhcCCCCeEEEeCCEEEEEEEcCCCCCceE
Confidence 88999999999973 2321111110 111222 4577877665 44 5677899999999999999998642 389
Q ss_pred EEEEEEe-CCeEEEE----EEcceEEEccCCCCcHHHHHHhCCCCcccccccCCCceeccc-cccccccccCCceEEEEe
Q psy1043 311 IGVEFVK-NHQRHVI----RARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDLK-VGYNLQDHVGLGGFTFLI 384 (1306)
Q Consensus 311 ~GV~~~~-~g~~~~v----~A~k~VVLaAGai~Sp~LLl~SGiG~~~~L~~~gI~~~~dlp-VG~nL~dH~~~~~~~~~~ 384 (1306)
+||++.+ ++..+++ ++++|||||||+|+||+|||+|||||+++|+++|||++.|+| ||+||+||+... +.+..
T Consensus 258 ~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~-i~~~~ 336 (587)
T PLN02785 258 TGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNS-IFVPS 336 (587)
T ss_pred EEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccc-eEEEe
Confidence 9999976 4544443 266899999999999999999999999999999999999999 999999998665 35555
Q ss_pred cCCcccchhhhhhHHHHHhhhhcCCCCccccCCcchhhHHHHHHHHHcCCCCcccCCcceEEEEeecCCCCCCchhhHhh
Q psy1043 385 NQPISLVQDRLESVQSVLNYAMMGNGPLTVMGGDRLESVQSVLNYAMMGNGPLTVMGGVEGLAFVNTKYASDGGNQIRKA 464 (1306)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (1306)
+.+... ..... +.....+++............ .+....+++... ...+...+.....+..+...
T Consensus 337 ~~~~~~---~~~~~-----~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 400 (587)
T PLN02785 337 KAPVEQ---SLIQT-----VGITKMGVYIEASSGFGQSPD----SIHCHHGIMSAE----IGQLSTIPPKQRTPEAIQAY 400 (587)
T ss_pred CCCchh---hhHhh-----hhhhccccceecccccccCch----hhhhhccccccc----cccccccCcccccchhhhhh
Confidence 443211 00000 000111111000000000000 000000111100 00000000000000000000
Q ss_pred cCCchhhhhcccCCcCCCCeEEEEeecCCcCceeEEEeccCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHHcCcchh
Q psy1043 465 HGLREDFYDEVYGPINNKDVWSAIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIEGVKIILELSKTRSFR 544 (1306)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~srg~v~l~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~ 544 (1306)
.... .. . .........++..+++|.|||+|+|+++||++.|.|++||+.+|.|++.++++++.+++++++.++.
T Consensus 401 ~~~~----~~-~-~~~~~~~~~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~ 474 (587)
T PLN02785 401 IHRK----KN-L-PHEAFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFT 474 (587)
T ss_pred ccCc----cc-c-cccccccceEEEEecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhh
Confidence 0000 00 0 0000011234567889999999999999999999999999999999999999999999999999887
Q ss_pred hccccccc--CCCC---------CCCCCCCCCHHHHHHHHHhccCCCccccccccccCCCCCCCccCCCCceeccCCcEE
Q psy1043 545 QYESRFHN--IPFP---------NCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRV 613 (1306)
Q Consensus 545 ~~~~~~~~--~~~~---------~~~~~~~~~d~~~~~~~~~~~~t~~H~~GT~rMG~~~d~~sVVD~~~rV~gv~NL~V 613 (1306)
.+...... ..+. ..+ ....+|++|++|++....+.||++|||+|| +|||+++||||++||||
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~d~~l~~~ir~~~~t~~H~~GTc~MG------~VVD~~lrV~GV~~LRV 547 (587)
T PLN02785 475 NFTQCDKQTMEKVLNMSVKANINLIP-KHTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRLRV 547 (587)
T ss_pred hhccccccccccccccccccccccCC-CCCCCHHHHHHHHHHhcccccCCcccccCC------CeECCCCeEeccCCeEE
Confidence 76422110 0000 000 123578899999999999999999999999 69999999999999999
Q ss_pred eeccCCCCCCCccchHHHHHHHHHHHHHHHHhHh
Q psy1043 614 IDASIMPTIVSGNTNAPVIMIGEKGSDMIKQDWR 647 (1306)
Q Consensus 614 ~DaSv~Pt~~~~NP~lTi~alAeraAd~I~~~~~ 647 (1306)
||+||||+++++||++|+||||||+||+|++++.
T Consensus 548 vDaSi~P~~p~~np~atv~miaer~A~~Il~~~~ 581 (587)
T PLN02785 548 IDGSTFDESPGTNPQATVMMMGRYMGVKILRERL 581 (587)
T ss_pred eecccCCCCCCCccHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998853
No 7
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=4.8e-61 Score=597.06 Aligned_cols=473 Identities=42% Similarity=0.691 Sum_probs=354.7
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCCCC---CCCCCCCCCCcc-ccCCCCCCCCccccCccccccCCCCe
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEE---SPLSDIPCTYPA-LQTSPLDWQYKTEPNDRACLGLNGRR 776 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~---~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (1306)
.+|||||||||.+|+++|.+|||++|++|||||+|+.. ......|..... +....++|.|.+.|+.. ..+..
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~~~ 79 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNNRR 79 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCCCe
Confidence 57999999999999999999999669999999999753 122233432221 22345678887777665 45668
Q ss_pred eecCCcceecchhHhccceeecCChhhHHHHHHc-CCCCCCcccchHHHHHhhhccCCCCCCCCCCCCCCCcccccC-CC
Q psy1043 777 SNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEAA-GNEGWSYRDTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEF-RY 854 (1306)
Q Consensus 777 ~~~~~g~~lGG~S~~~~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~g~~~~~~~-~~ 854 (1306)
+.|.+|++|||+|.+|++++.|+.+.||+.|... +..+|+|++++|||+++|.+.. ....+++..|++.+... ..
T Consensus 80 ~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~---~~~~~~g~~gp~~~~~~~~~ 156 (560)
T PRK02106 80 MECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDG---GEDDYRGGDGPLSVTRGKPG 156 (560)
T ss_pred eecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCC---CCccccCCCCCEEEeCCCCC
Confidence 8999999999999999999999999999999887 7889999999999999998742 12346777888887654 45
Q ss_pred CChHHHHHHHHHHHcCCCC-CCCCCCCccceeeccCCcCCCcccchhHhhhhhhhcCCCcEEEecceEEEEEecCCCCCC
Q psy1043 855 YSPVTEAFVESAGELGYEV-GDINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQ 933 (1306)
Q Consensus 855 ~~~~~~~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~ 933 (1306)
..+....+.++++++|++. .+.++....|+..+...|..|.|.++..+||.++.++.|++|++++.|++|++++
T Consensus 157 ~~~~~~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~----- 231 (560)
T PRK02106 157 TNPLFQAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEG----- 231 (560)
T ss_pred CCHHHHHHHHHHHHcCCCcCCCCCCCCCceeEEEeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeC-----
Confidence 5778899999999999986 4666666677777777888999999999999888888999999999999999986
Q ss_pred ceEEEEEEeC-CeeeeEEEEeCcEEEEcCCCcchHHHhcCcC--------------------------CCCcce--EecC
Q psy1043 934 MRATGVVVKK-GRKDPVLVRARREVILSAGAIGSPQVYLIPN--------------------------EHTHYQ--VDLT 984 (1306)
Q Consensus 934 ~rv~GV~~~~-G~~~~~~v~A~k~VVLAAGai~sp~LLl~p~--------------------------dh~~~~--~~~~ 984 (1306)
++++||++.+ +... .+.+.++||||||+|+||+|||+|. ||+... +.+.
T Consensus 232 ~~a~GV~~~~~~~~~--~~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~~~~~~~ 309 (560)
T PRK02106 232 KRAVGVEYERGGGRE--TARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVYIQYECK 309 (560)
T ss_pred CeEEEEEEEeCCcEE--EEEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccceEEEEeC
Confidence 7899999544 3322 4555567999999999999999943 555431 1111
Q ss_pred CCCC-CCcc----------eeecc-ccccCC---CCCccccccCC--Ccc---cccccccccc----ccCCcEEEEeeec
Q psy1043 985 DGPE-WPDI----------QLFFA-SAADND---DGGLFNKRNNG--LKD---DYYAGVFEPI----LYRDSITLAPLLL 1040 (1306)
Q Consensus 985 ~~~~-~p~~----------~~~~~-~~~~~~---~~~~~~~~~~~--~~~---~~~~~~~~~~----~~~~~~~~~~~~~ 1040 (1306)
.... .... ++.+. .+.... ....+...... .++ .+.+..+... .....+.+...++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (560)
T PRK02106 310 QPVSLYPALKWWNKPKIGAEWLFTGTGLGASNHFEAGGFIRSRAGVDWPNIQYHFLPVAIRYDGSNAVKGHGFQAHVGPM 389 (560)
T ss_pred CCcccccccchhhhhHHHHHHHhcCCCCccccccceeeEEecCCCCCCCCeEEEEeeccccccCCCCCCCCeEEEEEEec
Confidence 1000 0000 00000 000000 00000000000 000 0000000000 1112345555678
Q ss_pred ccCCCcEEEEccCCCCCCceeecCCCCCHHHHHHHHHHHHHHHHHHhchhhhhcccccccccCCCCCCCCCCCHHHHHHH
Q psy1043 1041 RPRSRGRIKLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKIGYAITRTKAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQ 1120 (1306)
Q Consensus 1041 ~p~s~g~v~l~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 1120 (1306)
+|.|+|+|+|+++||++.|.|+++|+.++.|++.+.++++.+.+++++.+++.+... ...|++. ..+++.|.++
T Consensus 390 ~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~p~~~---~~~~~~~~~~ 463 (560)
T PRK02106 390 RSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGR---EISPGAD---VQTDEEIDAF 463 (560)
T ss_pred CCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhcccc---ccCCCcc---cCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999988877765332 2234332 3578889999
Q ss_pred HhcccCcccccccccccCCCCCCCCccCCCCcEeccCCcEEecCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHhC
Q psy1043 1121 VRHYTMTIYHPVGTCKMGPDSDPGAVVDPRLRVRGVAGLRVIDASIMPTIVSGNTNAPTIMIAEKACDLIKEDWG 1195 (1306)
Q Consensus 1121 ~~~~~~~~~H~~GtcrMG~~~~~~sVVD~~~rV~g~~nL~V~D~Sv~P~~~~~Np~lTi~ala~raAd~I~~~~~ 1195 (1306)
++....+.+|++||||||+++ . ||||++|||||++||||+|+||||+.+++||++||||||||+||+|+++++
T Consensus 464 i~~~~~~~~H~~GTcrMG~d~-~-sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I~~~~~ 536 (560)
T PRK02106 464 VREHAETAYHPSCTCKMGTDP-M-AVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGRTP 536 (560)
T ss_pred HHhccCcCcccCCCeecCCCC-C-eeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHHhccCC
Confidence 999988999999999999865 4 899999999999999999999999999999999999999999999998873
No 8
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=4.8e-60 Score=585.19 Aligned_cols=469 Identities=40% Similarity=0.681 Sum_probs=352.4
Q ss_pred cEEEECCChHHHHHHHHHHcCCC-CEEEEECCCCCCC---CCCCCCCCCcc-ccCCCCCCCCccccCccccccCCCCeee
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQKN-WKVLLLEAGGEES---PLSDIPCTYPA-LQTSPLDWQYKTEPNDRACLGLNGRRSN 778 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~~G-~~VlVLE~G~~~~---~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1306)
||||||||.+|+++|.+|||+ | .+|||||+|+... .....|..... +....++|.|.+.|+.. ..+..+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~-~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~ 75 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSED-VSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVG 75 (532)
T ss_pred CEEEECCCchHHHHHHHhccC-CCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEe
Confidence 899999999999999999996 6 7999999998532 22233332111 22344678888877765 5677899
Q ss_pred cCCcceecchhHhccceeecCChhhHHHHHH-cCCCCCCcccchHHHHHhhhccCCCCCCCCCCCCCCCcccccCCCCCh
Q psy1043 779 WPRGKVIGGSSVLNAMLYVRGNRRDYDAWEA-AGNEGWSYRDTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFRYYSP 857 (1306)
Q Consensus 779 ~~~g~~lGG~S~~~~~~~~r~~~~d~~~w~~-~g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 857 (1306)
|++|++|||+|.+|++++.|+.+.||+.|+. .+..+|+|++++|||+++|..... ...+|+..|++.+.......+
T Consensus 76 ~~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~---~~~~~g~~G~~~v~~~~~~~~ 152 (532)
T TIGR01810 76 HARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG---EKPYRGHDGPIKVRRGPADNP 152 (532)
T ss_pred eecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC---CcccCCCCCCEEEecCCCCCH
Confidence 9999999999999999999999999999987 678899999999999999986321 235788889998887777788
Q ss_pred HHHHHHHHHHHcCCCC-CCCCCCCccceeeccCCcCCCcccchhHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceE
Q psy1043 858 VTEAFVESAGELGYEV-GDINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRA 936 (1306)
Q Consensus 858 ~~~~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv 936 (1306)
..+.+.++++++|++. .+.++....+++.+...|..|.|.++..+||.++.++.|++|+++++|++|++++ +++
T Consensus 153 ~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~-----~ra 227 (532)
T TIGR01810 153 LFQAFIEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEG-----NRA 227 (532)
T ss_pred HHHHHHHHHHHcCCCccCCCCCCCccceEEEEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecC-----CeE
Confidence 8999999999999986 4555555667777777778899999999999887779999999999999999986 799
Q ss_pred EEEEEeC-CeeeeEEEEeCcEEEEcCCCcchHHHhcCcC--------------------------CCCcc--eEecCCCC
Q psy1043 937 TGVVVKK-GRKDPVLVRARREVILSAGAIGSPQVYLIPN--------------------------EHTHY--QVDLTDGP 987 (1306)
Q Consensus 937 ~GV~~~~-G~~~~~~v~A~k~VVLAAGai~sp~LLl~p~--------------------------dh~~~--~~~~~~~~ 987 (1306)
+||++.+ +... ++.+.++||||||+|+||+|||++. ||+.. .+.+....
T Consensus 228 ~GV~~~~~~~~~--~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~~~~~~~~~~ 305 (532)
T TIGR01810 228 TGVEFKKGGRKE--HTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHACKQPV 305 (532)
T ss_pred EEEEEEeCCcEE--EEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccceeEEEecCCc
Confidence 9999644 3333 5556677999999999999999843 66554 22221110
Q ss_pred C-CCccee----------ec-cccccCCC---CCccccccCC--Ccc---cccccccc----ccccCCcEEEEeeecccC
Q psy1043 988 E-WPDIQL----------FF-ASAADNDD---GGLFNKRNNG--LKD---DYYAGVFE----PILYRDSITLAPLLLRPR 1043 (1306)
Q Consensus 988 ~-~p~~~~----------~~-~~~~~~~~---~~~~~~~~~~--~~~---~~~~~~~~----~~~~~~~~~~~~~~~~p~ 1043 (1306)
. .+.... .+ ........ ...+...... .++ .+...... .......+.+...+++|.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 385 (532)
T TIGR01810 306 SLYPSLNWLKQPFIGAQWLFGRKGAGASNHFEGGGFVRSNDDVDYPNIQYHFLPVAIRYDGTKAPKAHGFQVHVGPMYSN 385 (532)
T ss_pred ccccccchhhhhHHHHHHHhcCCCCccccccceeEEEecCCCCCCCCeEEEEEeeeeccCCCCCCCCCcEEEEEeecCCC
Confidence 0 000000 00 00000000 0000000000 000 00000000 000112344555678999
Q ss_pred CCcEEEEccCCCCCCceeecCCCCCHHHHHHHHHHHHHHHHHHhchhhhhcccccccccCCCCCCCCCCCHHHHHHHHhc
Q psy1043 1044 SRGRIKLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKIGYAITRTKAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQVRH 1123 (1306)
Q Consensus 1044 s~g~v~l~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 1123 (1306)
|+|+|+|+++||++.|.|+++|+.++.|++.+.++++.+.+++++.++..+... ...|+. ...+|+.|+++++.
T Consensus 386 srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~p~~---~~~~d~~~~~~ir~ 459 (532)
T TIGR01810 386 SRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGG---EISPGP---EVQTDEEIDEFVRR 459 (532)
T ss_pred CceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhcccc---ccCCCC---CCCCHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999988777665322 222322 23578999999999
Q ss_pred ccCcccccccccccCCCCCCCCccCCCCcEeccCCcEEecCCCCCCCCCcCcHHHHHHHHHHHHHHHHHH
Q psy1043 1124 YTMTIYHPVGTCKMGPDSDPGAVVDPRLRVRGVAGLRVIDASIMPTIVSGNTNAPTIMIAEKACDLIKED 1193 (1306)
Q Consensus 1124 ~~~~~~H~~GtcrMG~~~~~~sVVD~~~rV~g~~nL~V~D~Sv~P~~~~~Np~lTi~ala~raAd~I~~~ 1193 (1306)
...+.+|++||||||++.+++||||+++||||++||||||+||||+.+++||++|+||||||+||+|+++
T Consensus 460 ~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~ 529 (532)
T TIGR01810 460 HGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRGK 529 (532)
T ss_pred hcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998444459999999999999999999999999999999999999999999999965
No 9
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-56 Score=547.76 Aligned_cols=475 Identities=39% Similarity=0.630 Sum_probs=364.9
Q ss_pred CCCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCCCCCC-CCCCCCCCccccCC-CCCCCCccccCccccccCCCCe
Q psy1043 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESP-LSDIPCTYPALQTS-PLDWQYKTEPNDRACLGLNGRR 776 (1306)
Q Consensus 699 ~~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~-~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 776 (1306)
+..+|||||||||.+|+++|.+|++ +|++|||||+|+.... ...+|..+...... ..+|.+.++++.. +.++.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~-~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----~~~r~ 78 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEPH----LRGRE 78 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcC-CCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCcccC----CCCcc
Confidence 3468999999999999999999996 7999999999985332 44566666655555 7889999988884 78899
Q ss_pred eecCCcceecchhHhccceeecCChhhHHHHHHc-CCCCCCcccchHHHHHhhhccCCCCCC-CCCCCCCCCcccccCCC
Q psy1043 777 SNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEAA-GNEGWSYRDTLPYFIKSESVNISSLVD-SPYHGTQGPLSVEEFRY 854 (1306)
Q Consensus 777 ~~~~~g~~lGG~S~~~~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~~~~~~e~~~~~~~~~-~~~~~~~g~~~~~~~~~ 854 (1306)
+.|++|++|||+|.+|++.+.|+.+.||+.|... +..+|.|++++|||+++|+.....-.+ ...++..||+.+.....
T Consensus 79 ~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~ 158 (542)
T COG2303 79 LAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRS 158 (542)
T ss_pred ccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCC
Confidence 9999999999999999999999999999999764 679999999999999999853211112 45788899999988867
Q ss_pred CChHHHHHHHHHHHcCCCC-CCCCCCCccceeeccCCcCCCcccchhHhhhhhhhcCCCcEEEecceEEEEEecCCCCCC
Q psy1043 855 YSPVTEAFVESAGELGYEV-GDINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQ 933 (1306)
Q Consensus 855 ~~~~~~~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~ 933 (1306)
..+....+.+++.++|++. .++++..+.|++.+...+..|.++++..+||.++.+++|++|++++.|++|+++.
T Consensus 159 ~~~~~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~----- 233 (542)
T COG2303 159 PNPIARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEG----- 233 (542)
T ss_pred chHHHHHHHHHHHHcCCCcCcccccCCCCCcccceeeccCCeEeechhhcchhHhcCCceEEecCCEEEEEEEEC-----
Confidence 7889999999999999988 6678888888888777777999999999999999999999999999999999998
Q ss_pred ceEEEEEEe-CCe--eeeEEEEeCcEEEEcCCCcchHHHhcCcC--------------------------CCCcce--Ee
Q psy1043 934 MRATGVVVK-KGR--KDPVLVRARREVILSAGAIGSPQVYLIPN--------------------------EHTHYQ--VD 982 (1306)
Q Consensus 934 ~rv~GV~~~-~G~--~~~~~v~A~k~VVLAAGai~sp~LLl~p~--------------------------dh~~~~--~~ 982 (1306)
++++||++. ++. .. ...+.++||||||+|+||+|||++. ||+... +.
T Consensus 234 ~r~~gv~~~~~~~~~~~--~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~~~~~ 311 (542)
T COG2303 234 DRAVGVEVEIGDGGTIE--TAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIYVAFE 311 (542)
T ss_pred CeeEEEEEEeCCCCceE--EEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhhhhee
Confidence 899999943 222 22 4556667999999999999999944 444431 11
Q ss_pred cCCCC--------CCCc---ceeec-cccccCCC--CCccccccCCCcccccccccc-------ccccCCcEEEEeeecc
Q psy1043 983 LTDGP--------EWPD---IQLFF-ASAADNDD--GGLFNKRNNGLKDDYYAGVFE-------PILYRDSITLAPLLLR 1041 (1306)
Q Consensus 983 ~~~~~--------~~p~---~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 1041 (1306)
..... .... ..+.. ..+..... ...|..........-....+. .......+.+.....+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~gf~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 391 (542)
T COG2303 312 ATEPTNDSVLSLFSKLGIGADRYLLTRDGPGATNHFEGGFVRSGPAGEYPDGQYHFAPLPLAIRAAGAEHGFTLHVGPMR 391 (542)
T ss_pred ccCccccccccccccccccceeEEeecCCCcccccccccccccCccccCCCcccccccccccccccccCCccEEeeccCC
Confidence 11000 0000 00111 00110000 000111111110000001111 1223446677778889
Q ss_pred cCCCcEEEEccCCCCCCceeecCCCCCHHHHHHHHHHHHHHHHHHhchhhhhcccccccccCCCCCCCCCCCHHHHHHHH
Q psy1043 1042 PRSRGRIKLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKIGYAITRTKAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQV 1121 (1306)
Q Consensus 1042 p~s~g~v~l~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 1121 (1306)
|.++|.|.+++.||...|.|+++|..++.|+..+..+++...++.....+...... ...|+. ...+++.+..++
T Consensus 392 p~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~---e~~~~~---~~~~~~~~~~~~ 465 (542)
T COG2303 392 PKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKA---ELAPGP---RVTTDEDISAAI 465 (542)
T ss_pred CccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHH---hhcCCC---ccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999775444433221 222322 224566788889
Q ss_pred hcccCcccccccccccCCCCCCCCccCCCCcEeccCCcEEecCCCCCCCCCcCcHHHHHHHHHHHHHHHHH
Q psy1043 1122 RHYTMTIYHPVGTCKMGPDSDPGAVVDPRLRVRGVAGLRVIDASIMPTIVSGNTNAPTIMIAEKACDLIKE 1192 (1306)
Q Consensus 1122 ~~~~~~~~H~~GtcrMG~~~~~~sVVD~~~rV~g~~nL~V~D~Sv~P~~~~~Np~lTi~ala~raAd~I~~ 1192 (1306)
+....+.+|++||||||.||.. +|+|++|||||++||||+|+|+||+++++||++||+|||+|+||+|++
T Consensus 466 ~~~~~t~~H~~GT~rMG~Dp~~-~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I~~ 535 (542)
T COG2303 466 RFLARTAYHPMGTCRMGSDPAA-VVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADHILG 535 (542)
T ss_pred HhccCccccccccccCCCCchh-hccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHHHhh
Confidence 9999999999999999988877 677799999999999999999999999999999999999999999997
No 10
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=1.7e-52 Score=513.39 Aligned_cols=449 Identities=25% Similarity=0.351 Sum_probs=310.3
Q ss_pred CCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCCCCCCCCCCCCCCccccCCCCCCCCccccCccccccCCCCeeec
Q psy1043 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESPLSDIPCTYPALQTSPLDWQYKTEPNDRACLGLNGRRSNW 779 (1306)
Q Consensus 700 ~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1306)
..+|||||||+|.+||++|.+|++ +++|||||+|+.......+.. ...+.....+|.+.+.++.. ..+..+.+
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~-~~~~~~~~~d~~~~~~~q~~----~~~~~~~~ 125 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSF-LENFHIGLADTSPTSASQAF----ISTDGVIN 125 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhh-HHhhCCcccccCCccccccc----cCCCceec
Confidence 346999999999999999999998 589999999984311111111 11122345678888877754 45678999
Q ss_pred CCcceecchhHhccceeecCChhhHHHHHHcCCCCCCcccchHHHHHhhhccCCCCCCCCCCCCCCCcccccCCCCChHH
Q psy1043 780 PRGKVIGGSSVLNAMLYVRGNRRDYDAWEAAGNEGWSYRDTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFRYYSPVT 859 (1306)
Q Consensus 780 ~~g~~lGG~S~~~~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 859 (1306)
++|++|||+|.+|+|+|.|+++.+|+. .+|+|+.+++||++.|+... ..+...+..
T Consensus 126 ~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~------------------~~~~~~~~~ 181 (587)
T PLN02785 126 ARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIV------------------HWPKVAPWQ 181 (587)
T ss_pred cccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhcccc------------------cCCCcChHH
Confidence 999999999999999999999999953 57999999999999987510 011234677
Q ss_pred HHHHHHHHHcCCCCCCCCCCCcc---ceeeccCCc-CCCcccchhHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCce
Q psy1043 860 EAFVESAGELGYEVGDINGERQT---GFTRAHGTL-KNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMR 935 (1306)
Q Consensus 860 ~~~~~~~~~~G~~~~~~~~~~~~---g~~~~~~~~-~~g~~~~~~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~r 935 (1306)
..+++++.++|++. +++.... |.......+ ..|.|.++.. ++ +.+.+.|++|++++.|++|++++. +..++
T Consensus 182 ~~~~~a~~e~G~~~--~n~~~~d~~~G~~~g~~i~~~~g~R~saa~-l~-~~~~~~nl~Vl~~a~V~rIl~~~~-~~~~r 256 (587)
T PLN02785 182 AALRDSLLEVGVSP--FNGFTYDHVYGTKVGGTIFDEFGRRHTAAE-LL-AAGNPNKLRVLLHATVQKIVFDTS-GKRPR 256 (587)
T ss_pred HHHHHHHHHcCCCc--cCCCCCCCccceeeeEEEeCCCCEEcCHHH-HH-hhcCCCCeEEEeCCEEEEEEEcCC-CCCce
Confidence 89999999999864 3322211 111111111 4466666554 44 577789999999999999999862 12248
Q ss_pred EEEEEEe--CCeeeeEEE--EeCcEEEEcCCCcchHHHhcCcC--------------------------CCCcceEecCC
Q psy1043 936 ATGVVVK--KGRKDPVLV--RARREVILSAGAIGSPQVYLIPN--------------------------EHTHYQVDLTD 985 (1306)
Q Consensus 936 v~GV~~~--~G~~~~~~v--~A~k~VVLAAGai~sp~LLl~p~--------------------------dh~~~~~~~~~ 985 (1306)
++||++. +|..++..+ +++++||||||+|+||+|||+|. ||+...+....
T Consensus 257 a~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~ 336 (587)
T PLN02785 257 ATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPS 336 (587)
T ss_pred EEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccceEEEe
Confidence 9999964 455331111 25678999999999999999943 56554221111
Q ss_pred CCCCC-c-ceeecc--cccc-CCCCC-------------ccccccCC---Ccc-----cccccccc---cccc--CCcEE
Q psy1043 986 GPEWP-D-IQLFFA--SAAD-NDDGG-------------LFNKRNNG---LKD-----DYYAGVFE---PILY--RDSIT 1034 (1306)
Q Consensus 986 ~~~~p-~-~~~~~~--~~~~-~~~~~-------------~~~~~~~~---~~~-----~~~~~~~~---~~~~--~~~~~ 1034 (1306)
..... . .+.+.. .+.. ....+ .+...... ... ......+. .+.. .....
T Consensus 337 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (587)
T PLN02785 337 KAPVEQSLIQTVGITKMGVYIEASSGFGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGGF 416 (587)
T ss_pred CCCchhhhHhhhhhhccccceecccccccCchhhhhhccccccccccccccCcccccchhhhhhccCcccccccccccce
Confidence 00000 0 000000 0000 00000 00000000 000 00000000 0000 01113
Q ss_pred EEeeecccCCCcEEEEccCCCCCCceeecCCCCCHHHHHHHHHHHHHHHHHHhchhhhhccccccc--c-----------
Q psy1043 1035 LAPLLLRPRSRGRIKLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKIGYAITRTKAMKRFNPVLHN--V----------- 1101 (1306)
Q Consensus 1035 ~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------- 1101 (1306)
+...+++|.|+|+|+|+++||.+.|.|++||+.++.|++.+.++++.+++++++.+++.+...... .
T Consensus 417 ~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (587)
T PLN02785 417 ILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANI 496 (587)
T ss_pred EEEEecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhcccccccccccccccccccc
Confidence 445678999999999999999999999999999999999999999999999999988776522110 0
Q ss_pred -cCCCCCCCCCCCHHHHHHHHhcccCcccccccccccCCCCCCCCccCCCCcEeccCCcEEecCCCCCCCCCcCcHHHHH
Q psy1043 1102 -TIPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCKMGPDSDPGAVVDPRLRVRGVAGLRVIDASIMPTIVSGNTNAPTI 1180 (1306)
Q Consensus 1102 -~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~GtcrMG~~~~~~sVVD~~~rV~g~~nL~V~D~Sv~P~~~~~Np~lTi~ 1180 (1306)
..|. ...+++.|+++++....+.+|++|||+|| +|||+++||||++||||||+||||..|++||++|+|
T Consensus 497 ~~~p~----~~~~d~~l~~~ir~~~~t~~H~~GTc~MG------~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~ 566 (587)
T PLN02785 497 NLIPK----HTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVM 566 (587)
T ss_pred ccCCC----CCCCHHHHHHHHHHhcccccCCcccccCC------CeECCCCeEeccCCeEEeecccCCCCCCCccHHHHH
Confidence 0111 13577899999999999999999999999 699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy1043 1181 MIAEKACDLIKEDW 1194 (1306)
Q Consensus 1181 ala~raAd~I~~~~ 1194 (1306)
|||||+|++|+++.
T Consensus 567 miaer~A~~Il~~~ 580 (587)
T PLN02785 567 MMGRYMGVKILRER 580 (587)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999774
No 11
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=7.4e-47 Score=452.75 Aligned_cols=490 Identities=16% Similarity=0.163 Sum_probs=283.4
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCCCCCCC-------------cchhhHHh----hhcC-----------
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDIS-------------DVPVLAAY----LQLS----------- 131 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~~~~~-------------~~p~~~~~----~~~~----------- 131 (1306)
|||||||+|++|+++|+.|++ .|++|+|||+|....... +...+... ++..
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~-~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD-AGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT 79 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH-CCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence 799999999999999999999 799999999997643110 01111011 1100
Q ss_pred --CCCCccccccCccccccc-----CCCee-eecCcccccCcccccceEEecCChhhHHHHHhcCCCCC--ChhhHHHHH
Q psy1043 132 --GLDWSYKTEPSSTSCLAM-----EHNRC-NWPRGKVVGGSSVLNYMLYVRGNRNDYNHWESLGNPGW--GAAEALYYF 201 (1306)
Q Consensus 132 --~~~w~~~~~~~~~~~~~~-----~~~~~-~~~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w--~~~~~~~y~ 201 (1306)
...|+-..... ....+- ....+ ...+-+.|||+|.+|++.+.|+++.+. ...+ .+| +|+|+.|||
T Consensus 80 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r---~g~~-~dWPI~y~eL~PyY 154 (544)
T TIGR02462 80 LDPTAWSASIESF-FVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER---PKLS-DDAAEDDAEWDRLY 154 (544)
T ss_pred CCccccccCCCcc-eecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc---cCCC-CCCCCCHHHHHHHH
Confidence 01121100000 000000 00001 122457899999999999999999642 2223 589 899999999
Q ss_pred HHhccCCCCCCCCCCCCCCCCceeeecCCCccHHHHHHHHHHHHcCC-CCCCCCCCCccceeeecccccCCcccchhhhc
Q psy1043 202 KKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPLAEAFVRGGEELGY-ENRDINGEYQTGFMVAQGTVRNGARCSTSKAF 280 (1306)
Q Consensus 202 ~~~e~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~ 280 (1306)
.++|+++..... .+ ..+.......+.+.+.++ |. ..... . ..+. ...|..+.++++..+.
T Consensus 155 ~~Ae~~~gv~g~--~~---------~~~~~~~~~~~~~~~~~~--g~~~~~~~--P--lA~~--~~~c~~~ak~s~~~t~ 215 (544)
T TIGR02462 155 TKAESLIGTSTD--QF---------DESIRHNLVLRKLQDEYK--GQRDFQPL--P--LACH--RRTDPTYVEWHSADTV 215 (544)
T ss_pred HHHHHHhCCCCC--cC---------CCcccchhHHHHHHHHhc--cccccccC--c--hhhh--ccCCCccceecCCccc
Confidence 999998764321 00 001111222223333222 32 11100 0 0010 1023445555554344
Q ss_pred ccccc----CCCCeEEEeccEEEEEEecCCC-CeEEEEEEEe--CCeEEEEEEcceEEEccCCCCcHHHHHHhCCCCccc
Q psy1043 281 LQPVK----TRPNLHISLHSHVTKVLIDPKN-RMAIGVEFVK--NHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDH 353 (1306)
Q Consensus 281 l~~~~----~~~nl~I~~~~~V~~I~~d~~~-~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~Sp~LLl~SGiG~~~~ 353 (1306)
+..+. +++|++|++++.|++|++|+++ ++|++|.+.+ +++.++++|+. ||||||+|+||+|||+|+++....
T Consensus 216 ~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~-vVLAagaIetpRLLL~S~~~~~~~ 294 (544)
T TIGR02462 216 FDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADV-YVLACGAVHNPQILVNSGFGQLGR 294 (544)
T ss_pred hhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCE-EEEccCchhhHHHHHhCCCCCCcC
Confidence 43333 4889999999999999998654 5899999986 57788899976 999999999999999999975332
Q ss_pred ccccCCCceeccc-cccccccccCCceEEEEecCCcccchhhhhhHHHHHhhhhcCCCCccccCCcchhhHHHHHHHHH-
Q psy1043 354 LTDMGIKTIQDLK-VGYNLQDHVGLGGFTFLINQPISLVQDRLESVQSVLNYAMMGNGPLTVMGGDRLESVQSVLNYAM- 431 (1306)
Q Consensus 354 L~~~gI~~~~dlp-VG~nL~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~- 431 (1306)
..|+.+....+ ||||||||+...+ .+.++++... .+ .++...... ...... .+..
T Consensus 295 --p~gl~Nss~~g~VGRnlmdh~~~~~-~~~~~~~~~~---~~-------------~~~~~~~~~-~~~~~~---~~~~~ 351 (544)
T TIGR02462 295 --PDPTNPPPLLPSLGRYITEQSMTFC-QIVLSTELVD---SV-------------RSDPRGLDW-WKEKVA---NHMMK 351 (544)
T ss_pred --CCCcCCCCCCCCCCcchhcCCCccE-EEEecchhhh---hc-------------cCCcccccc-ccccch---hhhcc
Confidence 33444432123 9999999976544 4445443210 00 000000000 000000 0000
Q ss_pred cCCCCcccCCcceEEEEeecCCCCC--CchhhH-hhcCCchhhhhcccCCcCCCCeEEEEeecCCcCceeEEEecc--CC
Q psy1043 432 MGNGPLTVMGGVEGLAFVNTKYASD--GGNQIR-KAHGLREDFYDEVYGPINNKDVWSAIPMLLRPRSRGRIKLRS--RN 506 (1306)
Q Consensus 432 ~~~G~l~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~srg~v~l~~--~d 506 (1306)
...++...... ....-...++... +...+. ....+. ......... .......+.. ..|...++|+|+. +|
T Consensus 352 ~~~~~~~i~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~g-~~~~~~~~~-~~v~l~~~~e--~lP~~~NrV~Ld~~~~D 426 (544)
T TIGR02462 352 HPEDPLPIPFR-DPEPQVTTPFTEEHPWHTQIHRDAFSYG-AVGPSIDSR-VIVDLRFFGR--TEPKEENKLVFQDKVTD 426 (544)
T ss_pred ccCCccccccc-ccCcccccccccccccchhhhhhhhhcc-ccccccccc-ceeeEEEEec--cCCCCCCeEEcCCCCcC
Confidence 00010000000 0000000000000 000000 000000 000000000 0001112222 3467777888854 69
Q ss_pred CCCCCeeecCCCCChhhHHHHHHHHHHHHHHHcCcchhhcccccccCCCCCCCCCCCCCHHHHHHHHHhccCCCcccccc
Q psy1043 507 PLDYPRIQPEYFSDHHDMLTLIEGVKIILELSKTRSFRQYESRFHNIPFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGT 586 (1306)
Q Consensus 507 ~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~H~~GT 586 (1306)
.+|+|++.++|..+++|++.+..+.+.+.++++..+...... .+ . + .....++|++||
T Consensus 427 ~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~~~~G~~~~~~------~~----------~----~--~~~~~~~H~~Gt 484 (544)
T TIGR02462 427 TYNMPQPTFDFRFSAADSKRARRMMTDMCNVAAKIGGYLPGS------LP----------Q----F--MEPGLALHLAGT 484 (544)
T ss_pred CCCCeeEEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCcccc------cc----------c----c--cCCCccccCCCC
Confidence 999999999999999999999999999998876443211100 00 0 0 012356799999
Q ss_pred ccccCCCCCCCccCCCCceeccCCcEEeeccCCCCCCCccchHHHHHHHHHHHHHHHHhH
Q psy1043 587 CKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDMIKQDW 646 (1306)
Q Consensus 587 ~rMG~~~d~~sVVD~~~rV~gv~NL~V~DaSv~Pt~~~~NP~lTi~alAeraAd~I~~~~ 646 (1306)
||||.++ .+||||++|||||++||||+|+|+||+.+++||++|+||||+|+||+|++++
T Consensus 485 ~rMG~dp-~~sVvd~~~rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~ 543 (544)
T TIGR02462 485 TRIGFDE-QTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNF 543 (544)
T ss_pred eecCCCC-CCceECCCCcEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 9999776 5899999999999999999999999999999999999999999999999875
No 12
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=3.9e-46 Score=429.17 Aligned_cols=289 Identities=40% Similarity=0.673 Sum_probs=231.8
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCCCCCCCcchhhH-HhhhcCCCCCccccccCcccccccCCCeeeecC
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDISDVPVLA-AYLQLSGLDWSYKTEPSSTSCLAMEHNRCNWPR 158 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~~~~~~~p~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 158 (1306)
|||||||||++|+++|.|||++++++|||||+|+........+... .......++|.+...++.. ..++.+.|++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 76 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPF----LNGRTINWPR 76 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEEC----TTTTSEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccc----cccceeeeec
Confidence 8999999999999999999995458999999999766544222211 1223345677776665543 5777888999
Q ss_pred cccccCcccccceEEecCChhhHHHHHhc-CCCCCChhhHHHHHHHhccCCCCCCCCCCCCCCCCceee-ecCCCccHHH
Q psy1043 159 GKVVGGSSVLNYMLYVRGNRNDYNHWESL-GNPGWGAAEALYYFKKSEDNRNQYLAETPYHNSGGYLTV-QEAPWHTPLA 236 (1306)
Q Consensus 159 g~~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~~~~y~~~~e~~~~~~~~~~~~~~~~g~l~~-~~~~~~~~~~ 236 (1306)
|++|||+|.+|+|+++|+++.||+.|... |.++|+|+++.+||+++|....+. ...++..+++.+ .......+..
T Consensus 77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~---~~~~g~~~~~~v~~~~~~~~~~~ 153 (296)
T PF00732_consen 77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS---SDLHGVDGPLPVSSSPPYPSPMN 153 (296)
T ss_dssp B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB---GGGSCBSSSEEEHHHCSCHCTHH
T ss_pred ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc---ccccccccccccccccCCCCHHH
Confidence 99999999999999999999999999985 778899999999999999887654 556777788888 5566678888
Q ss_pred HHHHHHHHHcCCC-CCCCCCCCccceeeecccccCCcccchhhhccccccCCCCeEEEeccEEEEEEecCCCCeEEEEEE
Q psy1043 237 EAFVRGGEELGYE-NRDINGEYQTGFMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEF 315 (1306)
Q Consensus 237 ~~~~~~~~~~G~~-~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~ 315 (1306)
+.+.++++++|++ ..+.+.....|++.....|.+|.|.++..+||.++.+++|++|+++|.|++|+++.++.+++||++
T Consensus 154 ~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~ 233 (296)
T PF00732_consen 154 QALMDAAEELGIPVPQDFNGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEY 233 (296)
T ss_dssp HHHHHHHHHTTHHBCSCTTSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEE
T ss_pred HHHHHHHHHcCCccccccccccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeee
Confidence 9999999999999 667777777777766667899999999999999999999999999999999999755569999999
Q ss_pred EeCCe--EEEEEEcceEEEccCCCCcHHHHHHhCCCCcccccccCCCceecccccccccccc
Q psy1043 316 VKNHQ--RHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDLKVGYNLQDHV 375 (1306)
Q Consensus 316 ~~~g~--~~~v~A~k~VVLaAGai~Sp~LLl~SGiG~~~~L~~~gI~~~~dlpVG~nL~dH~ 375 (1306)
.+.+. ...+.++|+||||||+|+||+|||+|||||.++|+++||+++.|+|||+|||||+
T Consensus 234 ~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lpVG~nl~dH~ 295 (296)
T PF00732_consen 234 VDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLPVGRNLQDHP 295 (296)
T ss_dssp EETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-TTTECEB--E
T ss_pred eecCCcceeeeccceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCcchhchhccc
Confidence 87543 3555565779999999999999999999999999999999999999999999996
No 13
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=3.8e-40 Score=394.96 Aligned_cols=433 Identities=16% Similarity=0.171 Sum_probs=258.7
Q ss_pred ccEEEECCChHHHHHHHHHHcCCCCEEEEECCCCCCCCCC----C-------------------------CCCCCccc-c
Q psy1043 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESPLS----D-------------------------IPCTYPAL-Q 752 (1306)
Q Consensus 703 yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~~~----~-------------------------~p~~~~~~-~ 752 (1306)
|||||||+|++|+++|+.|++ .|++|+|||++....... . +|...... .
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~-~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD-AGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT 79 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH-CCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence 799999999999999999999 499999999998653110 0 00000000 0
Q ss_pred CCCCCCCCccccCccccccCC-----CCeee---cCCcceecchhHhccceeecCChhhHHHHHHcCCCCC--CcccchH
Q psy1043 753 TSPLDWQYKTEPNDRACLGLN-----GRRSN---WPRGKVIGGSSVLNAMLYVRGNRRDYDAWEAAGNEGW--SYRDTLP 822 (1306)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~g~~lGG~S~~~~~~~~r~~~~d~~~w~~~g~~~w--~~~~l~~ 822 (1306)
...-.|... |... .+... ....+ ..+-+.|||+|.+|++.+.|+.+.+. .| . ..+| +|++|.|
T Consensus 80 ~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g--~-~~dWPI~y~eL~P 152 (544)
T TIGR02462 80 LDPTAWSAS--IESF-FVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PK--L-SDDAAEDDAEWDR 152 (544)
T ss_pred CCccccccC--CCcc-eecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cC--C-CCCCCCCHHHHHH
Confidence 000011100 0000 00000 01111 23557899999999999999999642 11 1 2477 9999999
Q ss_pred HHHHhhhcc-CCCCCCCCCCCCCCCcccccCCCCChHHHHHHHHHHHcCC-CCCCCCCCCccceeeccCCcCCCcccchh
Q psy1043 823 YFIKSESVN-ISSLVDSPYHGTQGPLSVEEFRYYSPVTEAFVESAGELGY-EVGDINGERQTGFTRAHGTLKNGLRCSTA 900 (1306)
Q Consensus 823 ~~~~~e~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~~~~g~~~~~~~~~~g~~~~~~ 900 (1306)
||+++|++. +.+ .. ...........+.+.+.+. |. .+.. .... +. ...|..+.+.++.
T Consensus 153 yY~~Ae~~~gv~g-----------~~-~~~~~~~~~~~~~~~~~~~--g~~~~~~--~PlA--~~--~~~c~~~ak~s~~ 212 (544)
T TIGR02462 153 LYTKAESLIGTST-----------DQ-FDESIRHNLVLRKLQDEYK--GQRDFQP--LPLA--CH--RRTDPTYVEWHSA 212 (544)
T ss_pred HHHHHHHHhCCCC-----------Cc-CCCcccchhHHHHHHHHhc--ccccccc--Cchh--hh--ccCCCccceecCC
Confidence 999999972 211 10 0011111222222333222 22 1111 1101 11 1134556666554
Q ss_pred Hhhhhhhh----cCCCcEEEecceEEEEEecCCCCCCceEEEEEEe---CCeeeeEEEEeCcEEEEcCCCcchHHHhcCc
Q psy1043 901 KAYLRPII----ARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK---KGRKDPVLVRARREVILSAGAIGSPQVYLIP 973 (1306)
Q Consensus 901 ~~~L~~~~----~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~---~G~~~~~~v~A~k~VVLAAGai~sp~LLl~p 973 (1306)
.+.+..+. +..|++|++++.|++|+++++ +.++|++|++. +|+.+ +++|+. ||||||+|+||+|||+|
T Consensus 213 ~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~--~~~~v~~v~~~d~~~g~~~--~v~A~~-vVLAagaIetpRLLL~S 287 (544)
T TIGR02462 213 DTVFDLQPNDDAPSERFTLLTNHRCTRLVRNET--NESEIEAALVRDLLSGDRF--EIKADV-YVLACGAVHNPQILVNS 287 (544)
T ss_pred ccchhhhhhhhccCCCEEEEcCCEEEEEEeCCC--CCceeEEEEEEECCCCcEE--EEECCE-EEEccCchhhHHHHHhC
Confidence 44443333 477899999999999999862 11579999854 46655 899986 99999999999999995
Q ss_pred C------------------------CCCcc--eEecCCCCCCCcceeeccccc----cCCCC-----------Cccccc-
Q psy1043 974 N------------------------EHTHY--QVDLTDGPEWPDIQLFFASAA----DNDDG-----------GLFNKR- 1011 (1306)
Q Consensus 974 ~------------------------dh~~~--~~~~~~~~~~p~~~~~~~~~~----~~~~~-----------~~~~~~- 1011 (1306)
+ ||+.. .+.+. .. .+..+..... ...+. .+....
T Consensus 288 ~~~~~~~p~gl~Nss~~g~VGRnlmdh~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 363 (544)
T TIGR02462 288 GFGQLGRPDPTNPPPLLPSLGRYITEQSMTFCQIVLS-TE---LVDSVRSDPRGLDWWKEKVANHMMKHPEDPLPIPFRD 363 (544)
T ss_pred CCCCCcCCCCcCCCCCCCCCCcchhcCCCccEEEEec-ch---hhhhccCCccccccccccchhhhccccCCcccccccc
Confidence 4 22211 00000 00 0000000000 00000 000000
Q ss_pred -----------cCCCcccc------ccccccccccCCcE-EEEeeecccCCCcEEEEcc--CCCCCCceeecCCCCCHHH
Q psy1043 1012 -----------NNGLKDDY------YAGVFEPILYRDSI-TLAPLLLRPRSRGRIKLRT--ADPLDHPMIRPNYLYDEKD 1071 (1306)
Q Consensus 1012 -----------~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~p~s~g~v~l~~--~d~~~~p~i~~~y~~~~~D 1071 (1306)
...+.... +....+........ .-+.....|...++|+|++ +|.++.|.++++|..++.|
T Consensus 364 ~~~~~~~~~~~~~~w~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~e~lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d 443 (544)
T TIGR02462 364 PEPQVTTPFTEEHPWHTQIHRDAFSYGAVGPSIDSRVIVDLRFFGRTEPKEENKLVFQDKVTDTYNMPQPTFDFRFSAAD 443 (544)
T ss_pred cCcccccccccccccchhhhhhhhhcccccccccccceeeEEEEeccCCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHH
Confidence 00000000 00000000000011 1123456799999999964 6999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhchhhhhcccccccccCCCCCCCCCCCHHHHHHHHhcccCcccccccccccCCCCCCCCccCCCC
Q psy1043 1072 LKTLVEGAKIGYAITRTKAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCKMGPDSDPGAVVDPRL 1151 (1306)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~H~~GtcrMG~~~~~~sVVD~~~ 1151 (1306)
++.+.++.+.+.+++...+..... . .+ .+ .....+.|++||||||.++++ ||||+++
T Consensus 444 ~~~~~~~~~~~~~i~~~~G~~~~~-----~-~~----------~~------~~~~~~~H~~Gt~rMG~dp~~-sVvd~~~ 500 (544)
T TIGR02462 444 SKRARRMMTDMCNVAAKIGGYLPG-----S-LP----------QF------MEPGLALHLAGTTRIGFDEQT-TVANTDS 500 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccc-----c-cc----------cc------cCCCccccCCCCeecCCCCCC-ceECCCC
Confidence 999999999998885443321110 0 00 00 011257899999999999888 8999999
Q ss_pred cEeccCCcEEecCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHhC
Q psy1043 1152 RVRGVAGLRVIDASIMPTIVSGNTNAPTIMIAEKACDLIKEDWG 1195 (1306)
Q Consensus 1152 rV~g~~nL~V~D~Sv~P~~~~~Np~lTi~ala~raAd~I~~~~~ 1195 (1306)
||||++||||+|+|+||+.+++||++|+||+|+|+|++|+++++
T Consensus 501 rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~~ 544 (544)
T TIGR02462 501 KVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNFG 544 (544)
T ss_pred cEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999998763
No 14
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=9.1e-33 Score=318.09 Aligned_cols=262 Identities=42% Similarity=0.685 Sum_probs=195.3
Q ss_pred ccEEEECCChHHHHHHHHHHcCCCCEEEEECCCCCCCCCCCCCCC-CccccCCCCCCCCccccCccccccCCCCeeecCC
Q psy1043 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESPLSDIPCT-YPALQTSPLDWQYKTEPNDRACLGLNGRRSNWPR 781 (1306)
Q Consensus 703 yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1306)
|||||||||++|+++|.+||++++++|||||+|++.......+.. ........+.|.+...++.. ..+..+.|++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 76 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPF----LNGRTINWPR 76 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEEC----TTTTSEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccc----cccceeeeec
Confidence 899999999999999999999634799999999976554421111 11223345566666555544 6778888999
Q ss_pred cceecchhHhccceeecCChhhHHHHHHc-CCCCCCcccchHHHHHhhhccCCCCCCCCCCCCCCCccc-ccCCCCChHH
Q psy1043 782 GKVIGGSSVLNAMLYVRGNRRDYDAWEAA-GNEGWSYRDTLPYFIKSESVNISSLVDSPYHGTQGPLSV-EEFRYYSPVT 859 (1306)
Q Consensus 782 g~~lGG~S~~~~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~ 859 (1306)
|++|||+|.+|++++.|+++.||+.|... +..+|+|+++.+||+++|...... ...++..+++.+ .......+..
T Consensus 77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~---~~~~g~~~~~~v~~~~~~~~~~~ 153 (296)
T PF00732_consen 77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS---SDLHGVDGPLPVSSSPPYPSPMN 153 (296)
T ss_dssp B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB---GGGSCBSSSEEEHHHCSCHCTHH
T ss_pred ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc---ccccccccccccccccCCCCHHH
Confidence 99999999999999999999999999986 677899999999999999764332 455666777877 4555667788
Q ss_pred HHHHHHHHHcCCCC-CCCCCCCccceeeccCCcCCCcccchhHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEE
Q psy1043 860 EAFVESAGELGYEV-GDINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATG 938 (1306)
Q Consensus 860 ~~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~G 938 (1306)
..+.++++++|++. .+.+.....|++.....|+.|.|.++..+||.++.++.|++|+++++|++|++++ ..++++|
T Consensus 154 ~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~---~~~~a~g 230 (296)
T PF00732_consen 154 QALMDAAEELGIPVPQDFNGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDG---DGGRATG 230 (296)
T ss_dssp HHHHHHHHHTTHHBCSCTTSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEET---TSTEEEE
T ss_pred HHHHHHHHHcCCccccccccccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeec---cccceee
Confidence 99999999999984 5555555556554444599999999999999999988899999999999999974 3489999
Q ss_pred EEEeC-CeeeeEEEEeCcEEEEcCCCcchHHHhcCcC
Q psy1043 939 VVVKK-GRKDPVLVRARREVILSAGAIGSPQVYLIPN 974 (1306)
Q Consensus 939 V~~~~-G~~~~~~v~A~k~VVLAAGai~sp~LLl~p~ 974 (1306)
|++.+ +......+.+.++||||||+|+||+|||+|.
T Consensus 231 V~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SG 267 (296)
T PF00732_consen 231 VEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSG 267 (296)
T ss_dssp EEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTT
T ss_pred eeeeecCCcceeeeccceeEEeccCCCCChhhhcccc
Confidence 99543 2221114444456999999999999999964
No 15
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.97 E-value=1.8e-30 Score=264.80 Aligned_cols=143 Identities=41% Similarity=0.742 Sum_probs=118.8
Q ss_pred cCceeEEEeccCCCCCCCeeecCCCCChhhHHHHHHHHHHHHHHHcCcchhhcccc-cccCCCCCCCCCCCCCHHHHHHH
Q psy1043 494 PRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIEGVKIILELSKTRSFRQYESR-FHNIPFPNCTHIPMYTDAYYECM 572 (1306)
Q Consensus 494 p~srg~v~l~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~ 572 (1306)
|+|+|+|+|+++||++.|.|+++|+.++.|++.+.++++.+.+++.+. ++++... +.+...+.+......++++|+++
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY 79 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence 789999999999999999999999999999999999999999999988 6665432 22233334444566789999999
Q ss_pred HHhccCCCccccccccccCCCCCCCccCCCCceeccCCcEEeeccCCCCCCCccchHHHHHHHHHH
Q psy1043 573 IRHYSVTIYHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKG 638 (1306)
Q Consensus 573 ~~~~~~t~~H~~GT~rMG~~~d~~sVVD~~~rV~gv~NL~V~DaSv~Pt~~~~NP~lTi~alAera 638 (1306)
++....+.+|++||||||++++ ++|||++|||||++||||+|+||||+++++||++|+||||||+
T Consensus 80 ~~~~~~~~~H~~Gt~~mG~~~~-~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 80 IRQNVGTSWHPSGTCRMGPDPD-TSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp HHHHGEECSS-BETT-BTSSTT-TTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred eeeccceecccccceeccccCC-ceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 9999999999999999998886 4999999999999999999999999999999999999999996
No 16
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.96 E-value=7.9e-29 Score=252.67 Aligned_cols=143 Identities=44% Similarity=0.735 Sum_probs=120.1
Q ss_pred cCCCcEEEEccCCCCCCceeecCCCCCHHHHHHHHHHHHHHHHHHhchhhhhcccc-cccccCCCCCCCCCCCHHHHHHH
Q psy1043 1042 PRSRGRIKLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKIGYAITRTKAMKRFNPV-LHNVTIPGCEHTTPLSDAYWECQ 1120 (1306)
Q Consensus 1042 p~s~g~v~l~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~ 1120 (1306)
|+|+|+|+|+++|+++.|.|+++|+.++.|++.+.++++.+.+++... ++++... +.....+.+......++++|+++
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY 79 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence 789999999999999999999999999999999999999999999988 6666432 22333344555566788999999
Q ss_pred HhcccCcccccccccccCCCCCCCCccCCCCcEeccCCcEEecCCCCCCCCCcCcHHHHHHHHHHH
Q psy1043 1121 VRHYTMTIYHPVGTCKMGPDSDPGAVVDPRLRVRGVAGLRVIDASIMPTIVSGNTNAPTIMIAEKA 1186 (1306)
Q Consensus 1121 ~~~~~~~~~H~~GtcrMG~~~~~~sVVD~~~rV~g~~nL~V~D~Sv~P~~~~~Np~lTi~ala~ra 1186 (1306)
++....+.+|++|||+||+++++ +|||++|||||++||||+|+||||+.+++||++|+||||+||
T Consensus 80 ~~~~~~~~~H~~Gt~~mG~~~~~-~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 80 IRQNVGTSWHPSGTCRMGPDPDT-SVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp HHHHGEECSS-BETT-BTSSTTT-TSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred eeeccceecccccceeccccCCc-eeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 99999999999999999999999 899999999999999999999999999999999999999997
No 17
>PRK07121 hypothetical protein; Validated
Probab=99.38 E-value=3.9e-12 Score=156.74 Aligned_cols=65 Identities=23% Similarity=0.317 Sum_probs=48.9
Q ss_pred HhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEE-eCCeeeeEEEEeCcEEEEcCCCcchHHHhc
Q psy1043 901 KAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVV-KKGRKDPVLVRARREVILSAGAIGSPQVYL 971 (1306)
Q Consensus 901 ~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~-~~G~~~~~~v~A~k~VVLAAGai~sp~LLl 971 (1306)
...|...+++.|++|+++++|++|+.+++ ++|+||+. .+++.+ .|+|++.||||+|+|....-|+
T Consensus 180 ~~~L~~~~~~~gv~i~~~~~v~~l~~~~~----g~v~Gv~~~~~~~~~--~i~a~k~VVlAtGg~~~N~em~ 245 (492)
T PRK07121 180 MDPLAKRAAALGVQIRYDTRATRLIVDDD----GRVVGVEARRYGETV--AIRARKGVVLAAGGFAMNREMV 245 (492)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEECCC----CCEEEEEEEeCCcEE--EEEeCCEEEECCCCcCcCHHHH
Confidence 33455567788999999999999998741 68999995 445544 7889556999999998644443
No 18
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.37 E-value=4.3e-12 Score=156.97 Aligned_cols=59 Identities=29% Similarity=0.337 Sum_probs=47.4
Q ss_pred hhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEE-EeCCeeeeEEEEeCcEEEEcCCCcchHH
Q psy1043 903 YLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVV-VKKGRKDPVLVRARREVILSAGAIGSPQ 968 (1306)
Q Consensus 903 ~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~-~~~G~~~~~~v~A~k~VVLAAGai~sp~ 968 (1306)
.|...+++.|++|+++++|++|+.++ ++|+||. ..+|... .|+|++.||||+|+|+...
T Consensus 222 ~L~~~~~~~Gv~i~~~t~v~~Li~~~-----g~V~GV~~~~~g~~~--~i~a~kaVILAtGGf~~n~ 281 (564)
T PRK12845 222 GLFAGVLRAGIPIWTETSLVRLTDDG-----GRVTGAVVDHRGREV--TVTARRGVVLAAGGFDHDM 281 (564)
T ss_pred HHHHHHHHCCCEEEecCEeeEEEecC-----CEEEEEEEEECCcEE--EEEcCCEEEEecCCccccH
Confidence 34455677899999999999999765 7999998 4456555 7889888999999998654
No 19
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.35 E-value=7.4e-12 Score=156.00 Aligned_cols=66 Identities=26% Similarity=0.284 Sum_probs=51.2
Q ss_pred hHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEE-EeCCeeeeEEEEeCcEEEEcCCCcch-HHHhc
Q psy1043 900 AKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVV-VKKGRKDPVLVRARREVILSAGAIGS-PQVYL 971 (1306)
Q Consensus 900 ~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~-~~~G~~~~~~v~A~k~VVLAAGai~s-p~LLl 971 (1306)
....|...+++.|++|++++.|++|+.+++ ++|+||. ..+++.+ .|+|++.||||||+|+. +.++.
T Consensus 215 ~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~----g~V~Gv~~~~~~~~~--~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 215 LVARLRLALKDAGVPLWLDSPMTELITDPD----GAVVGAVVEREGRTL--RIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHHHHHHHHHhCCceEEeCCEEEEEEECCC----CcEEEEEEEeCCcEE--EEEeceeEEEecCcccCCHHHHH
Confidence 333455677788999999999999999742 7899998 4456555 79998789999999985 44443
No 20
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.34 E-value=6.7e-12 Score=154.53 Aligned_cols=60 Identities=15% Similarity=0.263 Sum_probs=45.7
Q ss_pred hhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEe--CCeeeeEEEEeCcEEEEcCCCcchHHHh
Q psy1043 903 YLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK--KGRKDPVLVRARREVILSAGAIGSPQVY 970 (1306)
Q Consensus 903 ~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~--~G~~~~~~v~A~k~VVLAAGai~sp~LL 970 (1306)
.|...+++.|++|++++.|++|+.++ ++|+||.+. +++.. .|+|+. ||||+|+|....-+
T Consensus 195 ~L~~~~~~~gv~i~~~t~v~~l~~~~-----g~V~Gv~~~~~~g~~~--~i~a~~-VVlAtGG~~~n~~m 256 (506)
T PRK06481 195 GLLKNVQERKIPLFVNADVTKITEKD-----GKVTGVKVKINGKETK--TISSKA-VVVTTGGFGANKDM 256 (506)
T ss_pred HHHHHHHHcCCeEEeCCeeEEEEecC-----CEEEEEEEEeCCCeEE--EEecCe-EEEeCCCcccCHHH
Confidence 34455677899999999999998765 789999853 33444 788975 99999999865433
No 21
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.33 E-value=8.4e-12 Score=153.92 Aligned_cols=60 Identities=30% Similarity=0.467 Sum_probs=47.4
Q ss_pred hhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEE-EeCCeeeeEEEEeCcEEEEcCCCcchHH
Q psy1043 902 AYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVV-VKKGRKDPVLVRARREVILSAGAIGSPQ 968 (1306)
Q Consensus 902 ~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~-~~~G~~~~~~v~A~k~VVLAAGai~sp~ 968 (1306)
.++..+.++.|++|+++++|++|+.++ ++|+||+ ..+|... .|+|++.||||||+|+.-+
T Consensus 178 ~l~~~~~~~~gv~i~~~t~~~~Li~~~-----g~v~Gv~~~~~g~~~--~i~A~k~VIlAtGG~~~n~ 238 (513)
T PRK12837 178 RFLAALARFPNARLRLNTPLVELVVED-----GRVVGAVVERGGERR--RVRARRGVLLAAGGFEQND 238 (513)
T ss_pred HHHHHHHhCCCCEEEeCCEEEEEEecC-----CEEEEEEEEECCcEE--EEEeCceEEEeCCCccCCH
Confidence 344444555799999999999999876 7999998 4456555 8999878999999997543
No 22
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.33 E-value=7.7e-12 Score=155.34 Aligned_cols=64 Identities=27% Similarity=0.359 Sum_probs=50.6
Q ss_pred HhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEE-eCCeeeeEEEEeCcEEEEcCCCcchHHHhc
Q psy1043 901 KAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVV-KKGRKDPVLVRARREVILSAGAIGSPQVYL 971 (1306)
Q Consensus 901 ~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~-~~G~~~~~~v~A~k~VVLAAGai~sp~LLl 971 (1306)
...|...+++.|++|+++++|++|+.++ ++|+||+. .+|+.+ .|+|++.||||+|+|+...-|+
T Consensus 211 ~~~l~~~~~~~gv~i~~~~~v~~Li~~~-----g~v~Gv~~~~~g~~~--~i~A~~aVIlAtGG~~~N~em~ 275 (557)
T PRK12844 211 IGRMLEAALAAGVPLWTNTPLTELIVED-----GRVVGVVVVRDGREV--LIRARRGVLLASGGFGHNAEMR 275 (557)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEeC-----CEEEEEEEEECCeEE--EEEecceEEEecCCccCCHHHH
Confidence 3345556778899999999999999876 79999994 566655 7899878999999998644433
No 23
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.31 E-value=6.1e-12 Score=152.50 Aligned_cols=57 Identities=25% Similarity=0.384 Sum_probs=44.4
Q ss_pred hhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEe---CCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 902 AYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK---KGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 902 ~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~---~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
..|...+++.|++|+++++|++|+.++ ++|+||... +|+.+ +|+|+ .||||+|+|+.
T Consensus 145 ~~l~~~~~~~gv~i~~~~~~~~Li~e~-----g~V~Gv~~~~~~~g~~~--~i~A~-aVIlAtGG~~~ 204 (417)
T PF00890_consen 145 EALAKAAEEAGVDIRFNTRVTDLITED-----GRVTGVVAENPADGEFV--RIKAK-AVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHTTEEEEESEEEEEEEEET-----TEEEEEEEEETTTCEEE--EEEES-EEEE----BGG
T ss_pred HHHHHHHhhcCeeeeccceeeeEEEeC-----CceeEEEEEECCCCeEE--EEeee-EEEeccCcccc
Confidence 335556777889999999999999997 799999944 67666 89998 69999999998
No 24
>PRK07121 hypothetical protein; Validated
Probab=99.30 E-value=4.8e-11 Score=147.18 Aligned_cols=64 Identities=23% Similarity=0.383 Sum_probs=50.3
Q ss_pred cccccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHH
Q psy1043 281 LQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILML 345 (1306)
Q Consensus 281 l~~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~ 345 (1306)
|...+++.|++|+++++|++|+.++++ +++||++..+++...++|++.||||+|++....-|+.
T Consensus 183 L~~~~~~~gv~i~~~~~v~~l~~~~~g-~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 183 LAKRAAALGVQIRYDTRATRLIVDDDG-RVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEECCCC-CEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 334456678999999999999987543 8999999777777789996669999999886544443
No 25
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.27 E-value=3.4e-11 Score=147.84 Aligned_cols=62 Identities=21% Similarity=0.306 Sum_probs=48.6
Q ss_pred hhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEe--CCeeeeEEEEeCcEEEEcCCCcchHHHhcC
Q psy1043 903 YLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK--KGRKDPVLVRARREVILSAGAIGSPQVYLI 972 (1306)
Q Consensus 903 ~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~--~G~~~~~~v~A~k~VVLAAGai~sp~LLl~ 972 (1306)
.|...+++.|++|+++++|++|+.++ ++|+||+.. +++.. .++++. ||||+|++.+...++.
T Consensus 136 ~l~~~~~~~gv~i~~~t~v~~l~~~~-----g~v~gv~~~~~~g~~~--~i~a~~-VIlAtGg~~~n~~~~~ 199 (466)
T PRK08274 136 ALYRSAERLGVEIRYDAPVTALELDD-----GRFVGARAGSAAGGAE--RIRAKA-VVLAAGGFESNREWLR 199 (466)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEEecC-----CeEEEEEEEccCCceE--EEECCE-EEECCCCCCCCHHHHH
Confidence 34456678899999999999999875 789999853 45444 788865 9999999987765554
No 26
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.27 E-value=5.4e-11 Score=148.30 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=51.9
Q ss_pred cccccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCc-HHHHH
Q psy1043 281 LQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNS-PQILM 344 (1306)
Q Consensus 281 l~~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~S-p~LLl 344 (1306)
|...++..|++|++++.|++|+.|+++ +|+||.+..+++.+.|+|++.||||+|+|+. +.++.
T Consensus 219 l~~~~~~~gv~i~~~~~~~~Li~d~~g-~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 219 LRLALKDAGVPLWLDSPMTELITDPDG-AVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHHHHHhCCceEEeCCEEEEEEECCCC-cEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 334556789999999999999997554 8999999877878889998889999999986 44443
No 27
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.26 E-value=5.1e-11 Score=143.65 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=43.2
Q ss_pred hhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEE-EeCCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 903 YLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVV-VKKGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 903 ~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~-~~~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
++..+.++.|++|++++.|++|+.++ ++++||. ..++..+ .|.|+. ||||+|+++.
T Consensus 134 L~~~~~~~~gV~i~~~t~v~~Li~~~-----~~v~Gv~~~~~g~~~--~i~Ak~-VILAtGG~~~ 190 (433)
T PRK06175 134 LLKKVKKRKNITIIENCYLVDIIEND-----NTCIGAICLKDNKQI--NIYSKV-TILATGGIGG 190 (433)
T ss_pred HHHHHHhcCCCEEEECcEeeeeEecC-----CEEEEEEEEECCcEE--EEEcCe-EEEccCcccc
Confidence 33333346799999999999998876 6899987 4566544 788965 9999999864
No 28
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.26 E-value=7.7e-11 Score=145.47 Aligned_cols=63 Identities=21% Similarity=0.446 Sum_probs=50.7
Q ss_pred ccccccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHH
Q psy1043 280 FLQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILM 344 (1306)
Q Consensus 280 ~l~~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl 344 (1306)
++..+.+++|++|+++++|++|+.+++ +|+||++..++...+|+|+|.||||||+++.-.-|+
T Consensus 179 l~~~~~~~~gv~i~~~t~~~~Li~~~g--~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~ 241 (513)
T PRK12837 179 FLAALARFPNARLRLNTPLVELVVEDG--RVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMR 241 (513)
T ss_pred HHHHHHhCCCCEEEeCCEEEEEEecCC--EEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHH
Confidence 344444567999999999999998754 999999877777888999888999999997544333
No 29
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.23 E-value=1.5e-10 Score=143.37 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=48.9
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHH
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILM 344 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl 344 (1306)
.+++.|++|++++.|++|+.+++ +|+||.+..++....+.|+|.||||+|+++...=|+
T Consensus 226 ~~~~~Gv~i~~~t~v~~Li~~~g--~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~ 284 (564)
T PRK12845 226 GVLRAGIPIWTETSLVRLTDDGG--RVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMR 284 (564)
T ss_pred HHHHCCCEEEecCEeeEEEecCC--EEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHH
Confidence 34567999999999999997644 999998877777788999888999999999655433
No 30
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.22 E-value=8.2e-10 Score=133.43 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=42.3
Q ss_pred hhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchH
Q psy1043 904 LRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSP 967 (1306)
Q Consensus 904 L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp 967 (1306)
|...+.+.|++++.+++|++|..+++ +++++|++.+| .+.+++ ||+|||++.+.
T Consensus 189 l~~~a~~~Gv~~~~~~~V~~i~~~~~----~~~~~v~t~~g-----~i~a~~-vVvaagg~~~~ 242 (407)
T TIGR01373 189 YARGADRRGVDIIQNCEVTGFIRRDG----GRVIGVETTRG-----FIGAKK-VGVAVAGHSSV 242 (407)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEcCC----CcEEEEEeCCc-----eEECCE-EEECCChhhHH
Confidence 34566788999999999999976421 56788888777 678987 99999997543
No 31
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.22 E-value=5.4e-11 Score=148.97 Aligned_cols=56 Identities=21% Similarity=0.282 Sum_probs=43.8
Q ss_pred hhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEe---CCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 904 LRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK---KGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 904 L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~---~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
|...+.+.|++|+.++.|++|+.+++ ++|.||... +|+.+ .|.|+. ||||+|+++.
T Consensus 193 L~~~a~~~gv~i~~~~~~~~Li~~~~----g~v~Gv~~~~~~~g~~~--~i~Aka-VILATGG~g~ 251 (635)
T PLN00128 193 LYGQAMKHNTQFFVEYFALDLIMDSD----GACQGVIALNMEDGTLH--RFRAHS-TILATGGYGR 251 (635)
T ss_pred HHHHHHhCCCEEEEeeEEEEEEEcCC----CEEEEEEEEEcCCCeEE--EEEcCe-EEECCCCCcc
Confidence 44445567999999999999998731 699999842 56655 788875 9999999974
No 32
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.21 E-value=1.8e-10 Score=141.55 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=51.2
Q ss_pred cccCCCCeEEEeccEEEEEEecCCCCeEEEEEEE-eCCeEEEEEEcceEEEccCCCCcHHHHHHhCCCC
Q psy1043 283 PVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFV-KNHQRHVIRARKEVILSGGAVNSPQILMLSGIGP 350 (1306)
Q Consensus 283 ~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~-~~g~~~~v~A~k~VVLaAGai~Sp~LLl~SGiG~ 350 (1306)
..+++.|++|++++.|++|+.+++ +++||.+. .++....++|+. ||||+|++.+...++..-.++
T Consensus 139 ~~~~~~gv~i~~~t~v~~l~~~~g--~v~gv~~~~~~g~~~~i~a~~-VIlAtGg~~~n~~~~~~~~~~ 204 (466)
T PRK08274 139 RSAERLGVEIRYDAPVTALELDDG--RFVGARAGSAAGGAERIRAKA-VVLAAGGFESNREWLREAWGQ 204 (466)
T ss_pred HHHHHCCCEEEcCCEEEEEEecCC--eEEEEEEEccCCceEEEECCE-EEECCCCCCCCHHHHHhhcCC
Confidence 345567899999999999998754 89999885 445556788865 999999999988877765443
No 33
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.21 E-value=2e-10 Score=141.48 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=44.5
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCC-eEEEEEEcceEEEccCCCCcHHHHH
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNH-QRHVIRARKEVILSGGAVNSPQILM 344 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g-~~~~v~A~k~VVLaAGai~Sp~LLl 344 (1306)
.+++.+++|++++.|++|+.+++ +++||.+...+ ...++.|+. ||||+|++....=++
T Consensus 199 ~~~~~gv~i~~~t~v~~l~~~~g--~V~Gv~~~~~~g~~~~i~a~~-VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 199 NVQERKIPLFVNADVTKITEKDG--KVTGVKVKINGKETKTISSKA-VVVTTGGFGANKDMI 257 (506)
T ss_pred HHHHcCCeEEeCCeeEEEEecCC--EEEEEEEEeCCCeEEEEecCe-EEEeCCCcccCHHHH
Confidence 34567899999999999987654 89999886543 556788864 999999987654333
No 34
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.21 E-value=1.1e-10 Score=145.28 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=43.1
Q ss_pred hhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEe---CCeeeeEEEEeCcEEEEcCCCcc
Q psy1043 904 LRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK---KGRKDPVLVRARREVILSAGAIG 965 (1306)
Q Consensus 904 L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~---~G~~~~~~v~A~k~VVLAAGai~ 965 (1306)
|...+.+.|++|++++.|++|+.++ ++|+||... +|+.+ .|+|+ .||||+|+++
T Consensus 142 L~~~~~~~gv~i~~~~~~~~Li~~~-----g~v~Gv~~~~~~~g~~~--~i~Ak-aVVLATGG~~ 198 (566)
T PRK06452 142 LFERTSGLNVDFYNEWFSLDLVTDN-----KKVVGIVAMQMKTLTPF--FFKTK-AVVLATGGMG 198 (566)
T ss_pred HHHHHHhCCCEEEeCcEEEEEEEEC-----CEEEEEEEEECCCCeEE--EEEeC-eEEECCCccc
Confidence 4445556799999999999999976 799999853 34444 78886 5999999997
No 35
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.20 E-value=2.3e-10 Score=138.67 Aligned_cols=57 Identities=21% Similarity=0.340 Sum_probs=45.0
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEE--eCCeEEEEEEcceEEEccCCCCcHHHHH
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFV--KNHQRHVIRARKEVILSGGAVNSPQILM 344 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~--~~g~~~~v~A~k~VVLaAGai~Sp~LLl 344 (1306)
.+++.+++|++++.|++|+.+++ +|+||++. .+++.++|+|+ .||||+|++.. .++.
T Consensus 150 ~~~~~gv~i~~~~~~~~Li~e~g--~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~~ 208 (417)
T PF00890_consen 150 AAEEAGVDIRFNTRVTDLITEDG--RVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELLR 208 (417)
T ss_dssp HHHHTTEEEEESEEEEEEEEETT--EEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHHH
T ss_pred HHhhcCeeeeccceeeeEEEeCC--ceeEEEEEECCCCeEEEEeee-EEEeccCcccc-cccc
Confidence 34556799999999999999876 99999999 67888999998 69999999998 4443
No 36
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.20 E-value=7.5e-11 Score=145.90 Aligned_cols=52 Identities=31% Similarity=0.520 Sum_probs=40.8
Q ss_pred cCCCcEEEecceEEEEEecCCCCCCceEEEEE-EeCCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 909 ARPNLHVSLHSHAYRVHFEPGPDGQMRATGVV-VKKGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 909 ~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~-~~~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
++.|++|++++.|++|+.++ ..++|+||. ..+|..+ .++|+. ||||+|+++.
T Consensus 146 ~~~gi~i~~~~~v~~Li~~~---~~g~v~Gv~~~~~g~~~--~i~Aka-VILATGG~~~ 198 (553)
T PRK07395 146 QRPNIEIISQALALSLWLEP---ETGRCQGISLLYQGQIT--WLRAGA-VILATGGGGQ 198 (553)
T ss_pred hcCCcEEEECcChhhheecC---CCCEEEEEEEEECCeEE--EEEcCE-EEEcCCCCcc
Confidence 45699999999999999874 126899998 4556544 678865 9999999864
No 37
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.18 E-value=2.3e-10 Score=128.36 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=63.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCccceeeccCCcCCCcccchhHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEE
Q psy1043 859 TEAFVESAGELGYEVGDINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATG 938 (1306)
Q Consensus 859 ~~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~G 938 (1306)
.++++++.+.+|++...-.. |..+ +...+.+.....|...+++.|++|+++++|.+|..++ ....
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~----Gr~F-----p~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~------~~f~ 145 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDL----GRMF-----PDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD------SGFR 145 (408)
T ss_pred HHHHHHHHHhcCCeeEEccC----ceec-----CCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC------ceEE
Confidence 36788888899987732221 1111 1212333444444457889999999999999998885 3456
Q ss_pred EEEeCCeeeeEEEEeCcEEEEcCCCcchHHH
Q psy1043 939 VVVKKGRKDPVLVRARREVILSAGAIGSPQV 969 (1306)
Q Consensus 939 V~~~~G~~~~~~v~A~k~VVLAAGai~sp~L 969 (1306)
|.+.+|+ +|+|++ +|||+|+..-|++
T Consensus 146 l~t~~g~----~i~~d~-lilAtGG~S~P~l 171 (408)
T COG2081 146 LDTSSGE----TVKCDS-LILATGGKSWPKL 171 (408)
T ss_pred EEcCCCC----EEEccE-EEEecCCcCCCCC
Confidence 6788886 789988 9999998777755
No 38
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.18 E-value=8.9e-11 Score=146.49 Aligned_cols=59 Identities=15% Similarity=0.132 Sum_probs=45.3
Q ss_pred HhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEE---eCCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 901 KAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVV---KKGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 901 ~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~---~~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
...|...+.+.|++|++++.|++|+.+++ ++|+||.. .+|+.+ .|+|+ .||||+|+++.
T Consensus 146 ~~~L~~~~~~~gi~i~~~~~~~~Li~~~~----g~v~Gv~~~~~~~g~~~--~i~Ak-aVILATGG~~~ 207 (588)
T PRK08958 146 LHTLYQQNLKNHTTIFSEWYALDLVKNQD----GAVVGCTAICIETGEVV--YFKAR-ATVLATGGAGR 207 (588)
T ss_pred HHHHHHHhhhcCCEEEeCcEEEEEEECCC----CEEEEEEEEEcCCCcEE--EEEcC-eEEECCCCccc
Confidence 33344455678999999999999998631 79999984 356655 78896 59999999974
No 39
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.18 E-value=1.1e-10 Score=146.66 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=44.2
Q ss_pred hhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEe---CCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 904 LRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK---KGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 904 L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~---~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
|...+++.|++|++++.|++|+.++ ++|+||... +|..+ .|.|+. ||||+|+++.
T Consensus 176 L~~~~~~~gV~i~~~t~v~~Li~d~-----g~V~GV~~~~~~~g~~~--~i~Aka-VVLATGG~g~ 233 (640)
T PRK07573 176 LSRQIAAGTVKMYTRTEMLDLVVVD-----GRARGIVARNLVTGEIE--RHTADA-VVLATGGYGN 233 (640)
T ss_pred HHHHHHhcCCEEEeceEEEEEEEeC-----CEEEEEEEEECCCCcEE--EEECCE-EEECCCCccc
Confidence 3335567899999999999999876 799999954 45544 788875 9999999985
No 40
>PLN02815 L-aspartate oxidase
Probab=99.17 E-value=1.5e-10 Score=143.72 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=40.6
Q ss_pred hhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEe---CCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 907 IIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK---KGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 907 ~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~---~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
+.+..|++|++++.|++|+.++++ ...+|+||... +|..+ .|.|+ .||||+|+++.
T Consensus 165 ~~~~~~i~i~~~~~~~~Li~~~~g-~~~~v~Gv~~~~~~~g~~~--~i~Ak-aVILATGG~g~ 223 (594)
T PLN02815 165 VKNDPNITFFEHHFAIDLLTSQDG-GSIVCHGADVLDTRTGEVV--RFISK-VTLLASGGAGH 223 (594)
T ss_pred HHhcCCCEEEeceEhheeeeecCC-CccEEEEEEEEEcCCCeEE--EEEec-eEEEcCCccee
Confidence 334569999999999999986421 00148999842 56545 78886 59999999974
No 41
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.17 E-value=1e-10 Score=146.28 Aligned_cols=57 Identities=28% Similarity=0.395 Sum_probs=44.6
Q ss_pred hhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEE---eCCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 902 AYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVV---KKGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 902 ~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~---~~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
..|...+.+.|++|++++.|++|+.++ ++|.||.. .+|+.. .++|+. ||||+|+++.
T Consensus 139 ~~L~~~~~~~gi~i~~~t~v~~L~~~~-----g~v~Gv~~~~~~~g~~~--~i~Aka-VVlATGG~~~ 198 (575)
T PRK05945 139 HELVNNLRRYGVTIYDEWYVMRLILED-----NQAKGVVMYHIADGRLE--VVRAKA-VMFATGGYGR 198 (575)
T ss_pred HHHHHHHhhCCCEEEeCcEEEEEEEEC-----CEEEEEEEEEcCCCeEE--EEECCE-EEECCCCCcC
Confidence 334455667899999999999999876 78999973 356544 688865 9999999864
No 42
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.17 E-value=1.9e-10 Score=142.60 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=44.5
Q ss_pred hHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEe------CCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 900 AKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK------KGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 900 ~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~------~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
....|...+++.+++|++++.|++|+.+++ ++|.||... ++... .+.|+. ||+|+|++..
T Consensus 146 i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~----g~v~Gv~~~~~~~~~~~g~~--~i~Ak~-VIlATGG~~~ 211 (541)
T PRK07804 146 VQRALDAAVRADPLDIREHALALDLLTDGT----GAVAGVTLHVLGEGSPDGVG--AVHAPA-VVLATGGLGQ 211 (541)
T ss_pred HHHHHHHHHHhCCCEEEECeEeeeeEEcCC----CeEEEEEEEeccCCCCCcEE--EEEcCe-EEECCCCCCC
Confidence 333455566677899999999999998751 589999854 22223 688875 9999999864
No 43
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.17 E-value=1.1e-10 Score=146.27 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=45.5
Q ss_pred HhhhhhhhcCCCcEEEecceEEEEEe-cCCCCCCceEEEEEE---eCCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 901 KAYLRPIIARPNLHVSLHSHAYRVHF-EPGPDGQMRATGVVV---KKGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 901 ~~~L~~~~~~~g~~i~~~~~V~~I~~-~~~~~~~~rv~GV~~---~~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
...|...+.+.|++|++++.|++|+. ++ ++|.||.. .+|+.+ .|+|+. ||||+|+++.
T Consensus 169 ~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-----g~v~Gv~~~~~~~g~~~--~i~Aka-VVLATGG~~~ 230 (617)
T PTZ00139 169 LHTLYGQSLKYDCNFFIEYFALDLIMDED-----GECRGVIAMSMEDGSIH--RFRAHY-TVIATGGYGR 230 (617)
T ss_pred HHHHHHHHHhCCCEEEeceEEEEEEECCC-----CEEEEEEEEECCCCeEE--EEECCc-EEEeCCCCcc
Confidence 33454556678999999999999998 44 79999984 356655 788875 9999999974
No 44
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.17 E-value=3.1e-10 Score=141.28 Aligned_cols=64 Identities=33% Similarity=0.391 Sum_probs=50.5
Q ss_pred hhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEE-eCCeeeeEEEEeCcEEEEcCCCcchHHHhcC
Q psy1043 902 AYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVV-KKGRKDPVLVRARREVILSAGAIGSPQVYLI 972 (1306)
Q Consensus 902 ~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~-~~G~~~~~~v~A~k~VVLAAGai~sp~LLl~ 972 (1306)
..|...+++.|++|+++++|++|+.++ ++|+||+. .+++.+ .|+|++.||||+|+|..-.-|+.
T Consensus 212 ~~L~~~~~~~gv~v~~~t~v~~l~~~~-----g~v~Gv~~~~~g~~~--~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 212 AGLRIGLQRAGVPVLLNTPLTDLYVED-----GRVTGVHAAESGEPQ--LIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred HHHHHHHHcCCCEEEeCCEEEEEEEeC-----CEEEEEEEEeCCcEE--EEEeceeEEEccCCcCcCHHHHH
Confidence 335556678899999999999999876 78999985 456655 78998779999999987554443
No 45
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.16 E-value=1.7e-10 Score=140.66 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=44.7
Q ss_pred hHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEe--CCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 900 AKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK--KGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 900 ~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~--~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
....|...+++.|++|+++++|++|+.+++ ++++||++. +++.. .+.++. ||||+|++..
T Consensus 132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~----g~v~Gv~~~~~~g~~~--~~~a~~-VVlAtGg~~~ 193 (439)
T TIGR01813 132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ----GTVVGVVVKGKGKGIY--IKAAKA-VVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeEeEECCC----CcEEEEEEEeCCCeEE--EEecce-EEEecCCCCC
Confidence 334455567788999999999999998642 689999854 33322 566765 9999999976
No 46
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.16 E-value=5.8e-10 Score=138.70 Aligned_cols=60 Identities=18% Similarity=0.362 Sum_probs=50.4
Q ss_pred cccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHH
Q psy1043 283 PVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILM 344 (1306)
Q Consensus 283 ~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl 344 (1306)
..+++.|++|++++.|++|+.+++ +|+||++..+++.+.+.|++.||||+|++....=|+
T Consensus 216 ~~~~~~gv~i~~~~~v~~Li~~~g--~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~ 275 (557)
T PRK12844 216 EAALAAGVPLWTNTPLTELIVEDG--RVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMR 275 (557)
T ss_pred HHHHhCCCEEEeCCEEEEEEEeCC--EEEEEEEEECCeEEEEEecceEEEecCCccCCHHHH
Confidence 345677999999999999998765 999999987787888999878999999998754444
No 47
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=2.2e-10 Score=143.42 Aligned_cols=57 Identities=25% Similarity=0.312 Sum_probs=44.9
Q ss_pred hhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEE---eCCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 903 YLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVV---KKGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 903 ~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~---~~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
.|...+.+.|++|++++.|++|+.+++ ++|+||.. .+|+.+ .|.|+. ||||+|+++.
T Consensus 154 ~L~~~~~~~gi~i~~~~~v~~Li~~~~----g~v~Gv~~~~~~~g~~~--~i~Aka-VVLATGG~~~ 213 (598)
T PRK09078 154 TLYQQSLKHNAEFFIEYFALDLIMDDG----GVCRGVVAWNLDDGTLH--RFRAHM-VVLATGGYGR 213 (598)
T ss_pred HHHHHHhhcCCEEEEeEEEEEEEEcCC----CEEEEEEEEECCCCcEE--EEEcCE-EEECCCCCcc
Confidence 344456678999999999999998741 68999984 356655 788865 9999999975
No 48
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.15 E-value=5.2e-10 Score=139.44 Aligned_cols=35 Identities=40% Similarity=0.595 Sum_probs=33.1
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
.++||||||+|.+|+++|+.+++ .|.+|+||||++
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~-~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELAD-AGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 57999999999999999999999 499999999986
No 49
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.14 E-value=1.1e-10 Score=138.48 Aligned_cols=58 Identities=31% Similarity=0.426 Sum_probs=44.9
Q ss_pred hhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHhc
Q psy1043 902 AYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYL 971 (1306)
Q Consensus 902 ~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LLl 971 (1306)
..|...+++.|++|+++++|++|..++ ++++||++.+| .++|+. ||+|+|++ +++|+-
T Consensus 151 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~-----~~v~gv~~~~g-----~i~ad~-vV~a~G~~-s~~l~~ 208 (358)
T PF01266_consen 151 QALAAEAQRAGVEIRTGTEVTSIDVDG-----GRVTGVRTSDG-----EIRADR-VVLAAGAW-SPQLLP 208 (358)
T ss_dssp HHHHHHHHHTT-EEEESEEEEEEEEET-----TEEEEEEETTE-----EEEECE-EEE--GGG-HHHHHH
T ss_pred hhhHHHHHHhhhhccccccccchhhcc-----ccccccccccc-----ccccce-eEeccccc-ceeeee
Confidence 344456677799999999999999998 78999999998 678987 99999974 676654
No 50
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.13 E-value=7.6e-10 Score=148.17 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=51.5
Q ss_pred CcccccccccccCCCCCCCCccCCCCcE------eccCCcEEecC---CCCCC-CCCcCcHHHHHHHHHHHHHHHHHHhC
Q psy1043 1126 MTIYHPVGTCKMGPDSDPGAVVDPRLRV------RGVAGLRVIDA---SIMPT-IVSGNTNAPTIMIAEKACDLIKEDWG 1195 (1306)
Q Consensus 1126 ~~~~H~~GtcrMG~~~~~~sVVD~~~rV------~g~~nL~V~D~---Sv~P~-~~~~Np~lTi~ala~raAd~I~~~~~ 1195 (1306)
...++-+|++++-.+. -|+|.++.+ .-|+|||.++. +++-. -+++|.....+..+..+++.+.+..+
T Consensus 827 p~~~~T~GGl~in~~~---qVLd~dg~~~~~~~~~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~ 903 (1167)
T PTZ00306 827 PSIHYTMGGCLISPSA---EMQMEDNSVNIFEDRRPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQ 903 (1167)
T ss_pred cccccccCCeEECCCc---eEEeccCccccccCCceeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888876432 366655320 12999999975 44432 23577788899999999999999888
Q ss_pred CCccccc
Q psy1043 1196 VMEGRER 1202 (1306)
Q Consensus 1196 ~~~~~~~ 1202 (1306)
++.....
T Consensus 904 ~~~~~~~ 910 (1167)
T PTZ00306 904 KKKYGLS 910 (1167)
T ss_pred ccCcccC
Confidence 7766554
No 51
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.13 E-value=3.2e-10 Score=141.19 Aligned_cols=57 Identities=16% Similarity=0.272 Sum_probs=44.2
Q ss_pred hhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEE---eCCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 903 YLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVV---KKGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 903 ~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~---~~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
.|...+.+.|++|++++.|++|+.+++ ++|+||.. .+|..+ .|+|+. ||||+|+++.
T Consensus 139 ~L~~~~~~~gv~i~~~t~v~~Li~~~~----~~v~Gv~~~~~~~g~~~--~i~Aka-VIlATGG~~~ 198 (543)
T PRK06263 139 GLMEYLIKERIKILEEVMAIKLIVDEN----REVIGAIFLDLRNGEIF--PIYAKA-TILATGGAGQ 198 (543)
T ss_pred HHHHHHhcCCCEEEeCeEeeeeEEeCC----cEEEEEEEEECCCCcEE--EEEcCc-EEECCCCCCC
Confidence 344556678999999999999998751 46999883 356555 788965 9999999974
No 52
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.12 E-value=5.2e-10 Score=139.99 Aligned_cols=62 Identities=24% Similarity=0.240 Sum_probs=47.8
Q ss_pred hhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEe-CCeeeeEEEEeCcEEEEcCCCcchHHHhc
Q psy1043 903 YLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK-KGRKDPVLVRARREVILSAGAIGSPQVYL 971 (1306)
Q Consensus 903 ~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~-~G~~~~~~v~A~k~VVLAAGai~sp~LLl 971 (1306)
.|...+++.|++|+++++|++|+.++ ++|+||.+. ++... .|+|++.||||+|++....-++
T Consensus 222 ~L~~~a~~~Gv~i~~~t~v~~l~~~~-----g~v~GV~~~~~~~~~--~i~a~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 222 RLLKSAEDLGVRIWESAPARELLRED-----GRVAGAVVETPGGLQ--EIRARKGVVLAAGGFPHDPARR 284 (581)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEeC-----CEEEEEEEEECCcEE--EEEeCCEEEEcCCCcccCHHHH
Confidence 34556778899999999999999876 799999853 44444 6889556999999997654443
No 53
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.12 E-value=6.3e-10 Score=134.24 Aligned_cols=54 Identities=22% Similarity=0.373 Sum_probs=43.4
Q ss_pred cccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCc
Q psy1043 283 PVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 283 ~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~S 339 (1306)
.+.++.|++|++++.|++|+.+++ +++||....++....+.|+. ||||+|++..
T Consensus 137 ~~~~~~gV~i~~~t~v~~Li~~~~--~v~Gv~~~~~g~~~~i~Ak~-VILAtGG~~~ 190 (433)
T PRK06175 137 KVKKRKNITIIENCYLVDIIENDN--TCIGAICLKDNKQINIYSKV-TILATGGIGG 190 (433)
T ss_pred HHHhcCCCEEEECcEeeeeEecCC--EEEEEEEEECCcEEEEEcCe-EEEccCcccc
Confidence 344567999999999999998765 89998876666666789965 9999999764
No 54
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.11 E-value=4.4e-10 Score=138.19 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=43.3
Q ss_pred hhhhhhhcC-CCcEEEecceEEEEEecCCCCCCceEEEEEEeC-CeeeeEEEEeCcEEEEcCCCcch
Q psy1043 902 AYLRPIIAR-PNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKK-GRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 902 ~~L~~~~~~-~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~-G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
..|...+++ .|++|++++.|++|+.++ ++++||...+ +... .++|+. ||||+|++..
T Consensus 132 ~~L~~~~~~~~gi~i~~~~~v~~l~~~~-----g~v~Gv~~~~~~~~~--~i~A~~-VVlAtGG~~~ 190 (488)
T TIGR00551 132 TTLVKKALNHPNIRIIEGENALDLLIET-----GRVVGVWVWNRETVE--TCHADA-VVLATGGAGK 190 (488)
T ss_pred HHHHHHHHhcCCcEEEECeEeeeeeccC-----CEEEEEEEEECCcEE--EEEcCE-EEECCCcccC
Confidence 334444554 799999999999998876 6899998543 4334 678875 9999999864
No 55
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.11 E-value=6e-10 Score=139.35 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=48.0
Q ss_pred hhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEe-CCeeeeEEEEeCcEEEEcCCCcchHHHhc
Q psy1043 903 YLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK-KGRKDPVLVRARREVILSAGAIGSPQVYL 971 (1306)
Q Consensus 903 ~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~-~G~~~~~~v~A~k~VVLAAGai~sp~LLl 971 (1306)
.|...+++.|++|++++.|++|+.++ ++|+||.+. +|+.+ .|.|++.||||+|+|+...-|+
T Consensus 226 aL~~~~~~~Gv~i~~~t~v~~Li~~~-----g~V~GV~~~~~g~~~--~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 226 RLLYSLRARGVRILTQTDVESLETDH-----GRVIGATVVQGGVRR--RIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEeeC-----CEEEEEEEecCCeEE--EEEccceEEECCCCcccCHHHH
Confidence 34456778899999999999999876 799999854 45544 7887667999999998643333
No 56
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.10 E-value=6.1e-10 Score=140.32 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=44.6
Q ss_pred hhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEe---CCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 904 LRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK---KGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 904 L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~---~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
|...+.+.|++|+.++.|++|+.++ ++|.||... +|+.+ .|.|+. ||||||+++.
T Consensus 164 L~~~~~~~gv~i~~~~~~~~Li~~~-----g~v~Gv~~~~~~~G~~~--~i~Aka-VVLATGG~g~ 221 (657)
T PRK08626 164 VDNEAIKLGVPVHDRKEAIALIHDG-----KRCYGAVVRCLITGELR--AYVAKA-TLIATGGYGR 221 (657)
T ss_pred HHHHHHhCCCEEEeeEEEEEEEEEC-----CEEEEEEEEEcCCCcEE--EEEcCe-EEECCCcccC
Confidence 4455667899999999999999876 799999843 56655 788965 9999999864
No 57
>PRK12839 hypothetical protein; Provisional
Probab=99.10 E-value=6.5e-10 Score=138.16 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=47.3
Q ss_pred CcccccccccccCCCCCCCCccCCCCcEeccCCcEEecC---CCCCC--CCCcCcHHHHHHHHHHHHHHHHHH
Q psy1043 1126 MTIYHPVGTCKMGPDSDPGAVVDPRLRVRGVAGLRVIDA---SIMPT--IVSGNTNAPTIMIAEKACDLIKED 1193 (1306)
Q Consensus 1126 ~~~~H~~GtcrMG~~~~~~sVVD~~~rV~g~~nL~V~D~---Sv~P~--~~~~Np~lTi~ala~raAd~I~~~ 1193 (1306)
....|-+|+++.-.+ - -|+|.++++ |+|||.++. +++-. ..+++.....+..+..|++.+.++
T Consensus 500 p~~~~T~GGl~in~~--~-qVLd~dg~p--IpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~ 567 (572)
T PRK12839 500 PGSFGTFAGLVADGK--S-RVLRDDDTP--IDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGS 567 (572)
T ss_pred ccccccCCCccCCCC--c-eEECCCCCC--cCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhc
Confidence 345677888887543 2 489988875 999999984 55532 135778889999999999999754
No 58
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=4.9e-10 Score=140.08 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=32.5
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
..+||||||||+||++||+++++ .|.+|+||||+.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~-~G~~V~lieK~~ 36 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAE-AGVHVDLFSLVP 36 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHH-cCCcEEEEEccC
Confidence 35799999999999999999999 499999999986
No 59
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=2.5e-10 Score=143.54 Aligned_cols=35 Identities=31% Similarity=0.455 Sum_probs=32.8
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
.+|||||||||.+|++||+.+++ .|.+|+||||+.
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae-~G~~V~lieK~~ 41 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARE-RGLRVAVVCKSL 41 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHH-CCCCEEEEeccC
Confidence 36999999999999999999999 599999999986
No 60
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.09 E-value=4.4e-10 Score=140.33 Aligned_cols=50 Identities=18% Similarity=0.312 Sum_probs=40.5
Q ss_pred cCCCcEEEecceEEEEEecCCCCCCceEEEEEE---eCCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 909 ARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVV---KKGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 909 ~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~---~~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
+..|+++++++.|++|+.++ ++|.||.. .+|..+ .++|+. ||||+|+++.
T Consensus 145 ~~~~i~i~~~~~v~~Li~~~-----g~v~Gv~~~~~~~g~~~--~i~Aka-VIlATGG~~~ 197 (582)
T PRK09231 145 KYPQIQRFDEHFVLDILVDD-----GHVRGLVAMNMMEGTLV--QIRANA-VVMATGGAGR 197 (582)
T ss_pred cCCCcEEEeCeEEEEEEEeC-----CEEEEEEEEEcCCCcEE--EEECCE-EEECCCCCcC
Confidence 34589999999999999876 78999873 356545 788865 9999999864
No 61
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.09 E-value=7.6e-10 Score=138.64 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=46.9
Q ss_pred hhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeC-CeeeeEEEEeCcEEEEcCCCcchHHHhc
Q psy1043 904 LRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKK-GRKDPVLVRARREVILSAGAIGSPQVYL 971 (1306)
Q Consensus 904 L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~-G~~~~~~v~A~k~VVLAAGai~sp~LLl 971 (1306)
|...+++.|++|++++.|++|+.++ ++|+||.+.+ +... .+.+++.||||+|++....-++
T Consensus 220 L~~~~~~~Gv~i~~~~~v~~l~~~~-----g~V~GV~~~~~~~~~--~i~a~k~VVlAtGg~~~n~~~~ 281 (574)
T PRK12842 220 LAKSALDLGIPILTGTPARELLTEG-----GRVVGARVIDAGGER--RITARRGVVLACGGFSHDLARI 281 (574)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEeeC-----CEEEEEEEEcCCceE--EEEeCCEEEEcCCCccchHHHH
Confidence 4445678899999999999999886 7999999654 3323 6888767999999997444443
No 62
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.09 E-value=5.5e-10 Score=137.52 Aligned_cols=54 Identities=26% Similarity=0.372 Sum_probs=41.6
Q ss_pred hhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEe--CCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 904 LRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK--KGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 904 L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~--~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
|...+. .|++|++++.|++|+.++ +++.||... +|+.+ .++|+. ||||+|+++.
T Consensus 136 L~~~~~-~gV~i~~~~~v~~Li~~~-----g~v~Gv~~~~~~g~~~--~i~Ak~-VVlATGG~~~ 191 (510)
T PRK08071 136 LLQELV-PHVTVVEQEMVIDLIIEN-----GRCIGVLTKDSEGKLK--RYYADY-VVLASGGCGG 191 (510)
T ss_pred HHHHHh-cCCEEEECeEhhheeecC-----CEEEEEEEEECCCcEE--EEEcCe-EEEecCCCcc
Confidence 333443 689999999999998876 789999854 34444 688875 9999999874
No 63
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.08 E-value=9.5e-10 Score=136.18 Aligned_cols=53 Identities=25% Similarity=0.401 Sum_probs=43.0
Q ss_pred CCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCc
Q psy1043 286 TRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 286 ~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~S 339 (1306)
++.|++|++++.|++|+.++++++|+||.+..++....+.|+ .||||+|+++.
T Consensus 146 ~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~Ak-aVILATGG~~~ 198 (553)
T PRK07395 146 QRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAG-AVILATGGGGQ 198 (553)
T ss_pred hcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcC-EEEEcCCCCcc
Confidence 456999999999999998753238999988777766678885 59999999753
No 64
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=7.4e-10 Score=138.59 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=43.5
Q ss_pred hhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEe---CCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 903 YLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK---KGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 903 ~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~---~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
.|...+.+.|++|+.++.|++|+.+++ ++|.||... +|+.+ .+.|+. ||||+|+++.
T Consensus 153 ~L~~~~~~~gi~i~~~~~~~~Li~~~~----g~v~Gv~~~~~~~g~~~--~i~Aka-VILATGG~~~ 212 (591)
T PRK07057 153 TLYQQNVAAKTQFFVEWMALDLIRDAD----GDVLGVTALEMETGDVY--ILEAKT-TLFATGGAGR 212 (591)
T ss_pred HHHHHHHhcCCEEEeCcEEEEEEEcCC----CeEEEEEEEEcCCCeEE--EEECCe-EEECCCCccc
Confidence 344455678999999999999998631 689999842 45544 678865 9999999874
No 65
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.08 E-value=6.5e-10 Score=138.06 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=44.3
Q ss_pred hhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeC---CeeeeEEEEeCcEEEEcCCCcchHHHh
Q psy1043 906 PIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKK---GRKDPVLVRARREVILSAGAIGSPQVY 970 (1306)
Q Consensus 906 ~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~---G~~~~~~v~A~k~VVLAAGai~sp~LL 970 (1306)
..+.+.|++|+++++|+.|..++ ++++||++.+ ++.. .|+|+. ||+|||++ +.+|+
T Consensus 157 ~~A~~~Ga~i~~~t~V~~i~~~~-----~~v~gv~v~d~~~g~~~--~i~A~~-VVnAaG~w-a~~l~ 215 (546)
T PRK11101 157 LDAKEHGAQILTYHEVTGLIREG-----DTVCGVRVRDHLTGETQ--EIHAPV-VVNAAGIW-GQHIA 215 (546)
T ss_pred HHHHhCCCEEEeccEEEEEEEcC-----CeEEEEEEEEcCCCcEE--EEECCE-EEECCChh-HHHHH
Confidence 35667899999999999998876 6899998643 4434 789987 99999987 45554
No 66
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.08 E-value=4.9e-10 Score=139.52 Aligned_cols=50 Identities=22% Similarity=0.291 Sum_probs=40.9
Q ss_pred cCCCcEEEecceEEEEEecCCCCCCceEEEEEE---eCCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 909 ARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVV---KKGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 909 ~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~---~~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
+..|++++.++.|++|+.++ ++|.||.. .+|..+ .|.|+. ||||+|+++.
T Consensus 144 ~~~~i~i~~~~~v~~Li~~~-----g~v~Gv~~~~~~~g~~~--~i~Aka-VILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVDD-----GRVCGLVAIEMAEGRLV--TILADA-VVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEeeC-----CEEEEEEEEEcCCCcEE--EEecCE-EEEcCCCCcc
Confidence 44689999999999999876 79999983 356555 788965 9999999874
No 67
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.06 E-value=2.1e-09 Score=131.15 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=44.6
Q ss_pred cccccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCC-eEEEEEEcceEEEccCCCCcHHHH
Q psy1043 281 LQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNH-QRHVIRARKEVILSGGAVNSPQIL 343 (1306)
Q Consensus 281 l~~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g-~~~~v~A~k~VVLaAGai~Sp~LL 343 (1306)
|...+++.|++|++++.|++|+.++++ +++||++...+ ....+.++ .||||+|++..-.-|
T Consensus 136 l~~~~~~~gv~i~~~~~v~~l~~~~~g-~v~Gv~~~~~~g~~~~~~a~-~VVlAtGg~~~n~~m 197 (439)
T TIGR01813 136 LYKKAKKEGIDTRLNSKVEDLIQDDQG-TVVGVVVKGKGKGIYIKAAK-AVVLATGGFGSNKEM 197 (439)
T ss_pred HHHHHHHcCCEEEeCCEeeEeEECCCC-cEEEEEEEeCCCeEEEEecc-eEEEecCCCCCCHHH
Confidence 334455678999999999999987543 89999887543 33455664 599999998764333
No 68
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.06 E-value=1.3e-09 Score=136.77 Aligned_cols=56 Identities=25% Similarity=0.302 Sum_probs=43.9
Q ss_pred hhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEE---eCCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 903 YLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVV---KKGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 903 ~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~---~~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
.|...+.+.|++|++++.|++|+.++ ++|+||.. .+|+.. .++|+. ||||+|++..
T Consensus 134 ~L~~~~~~~gv~i~~~~~v~~L~~~~-----g~v~Gv~~~~~~~g~~~--~i~Ak~-VVlAtGG~~~ 192 (566)
T TIGR01812 134 TLYEQCLKLGVSFFNEYFALDLIHDD-----GRVRGVVAYDLKTGEIV--FFRAKA-VVLATGGYGR 192 (566)
T ss_pred HHHHHHHHcCCEEEeccEEEEEEEeC-----CEEEEEEEEECCCCcEE--EEECCe-EEECCCcccC
Confidence 34445556699999999999999876 79999984 356544 788865 9999999863
No 69
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06 E-value=1.8e-09 Score=135.88 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=43.2
Q ss_pred cCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 285 KTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 285 ~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
+++.|++|++++.|++|+.+++ +|+||.+.+ ++....+.|+. ||||+|++..
T Consensus 180 ~~~~gV~i~~~t~v~~Li~d~g--~V~GV~~~~~~~g~~~~i~Aka-VVLATGG~g~ 233 (640)
T PRK07573 180 IAAGTVKMYTRTEMLDLVVVDG--RARGIVARNLVTGEIERHTADA-VVLATGGYGN 233 (640)
T ss_pred HHhcCCEEEeceEEEEEEEeCC--EEEEEEEEECCCCcEEEEECCE-EEECCCCccc
Confidence 4567899999999999998765 999999875 45556788865 9999999875
No 70
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.05 E-value=5.8e-10 Score=139.77 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=40.9
Q ss_pred hcCCCcEEEecceEEEEEecCCCCCCceEEEEEE---eCCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 908 IARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVV---KKGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 908 ~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~---~~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
.+..|++|+.++.|++|+.++ ++++||.. .+|+.+ .|.|+. ||||+|+++.
T Consensus 148 ~~~~gv~i~~~~~v~~Li~~~-----g~v~Gv~~~~~~~g~~~--~i~Ak~-VIlATGG~~~ 201 (577)
T PRK06069 148 LRFDNIHFYDEHFVTSLIVEN-----GVFKGVTAIDLKRGEFK--VFQAKA-GIIATGGAGR 201 (577)
T ss_pred HhcCCCEEEECCEEEEEEEEC-----CEEEEEEEEEcCCCeEE--EEECCc-EEEcCchhcc
Confidence 344799999999999999876 78999983 356544 688976 9999999863
No 71
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.05 E-value=2.5e-09 Score=133.19 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=51.4
Q ss_pred cccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHHh
Q psy1043 283 PVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLS 346 (1306)
Q Consensus 283 ~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~S 346 (1306)
..+++.|++|++++.|++|+.+++ +|+||.+..+++...++|++.||||+|++.+-.-|+..
T Consensus 216 ~~~~~~gv~v~~~t~v~~l~~~~g--~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 216 IGLQRAGVPVLLNTPLTDLYVEDG--RVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred HHHHcCCCEEEeCCEEEEEEEeCC--EEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 344677999999999999998754 89999987777778899987899999999986665544
No 72
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.05 E-value=4.1e-10 Score=137.73 Aligned_cols=36 Identities=36% Similarity=0.470 Sum_probs=32.7
Q ss_pred CCccEEEECCChHHHHHHHHHHcC-CCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQ-KNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~-~G~~VlVLE~G~ 736 (1306)
.++||||||+|+.|+++|++|++. +|.+|+|||++.
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 469999999999999999999983 389999999985
No 73
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.04 E-value=7.8e-09 Score=128.37 Aligned_cols=60 Identities=22% Similarity=0.201 Sum_probs=48.6
Q ss_pred hhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHhc
Q psy1043 902 AYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYL 971 (1306)
Q Consensus 902 ~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LLl 971 (1306)
..|...+++.|++|++++.|++|..++ +++++|++.+|+ ++.|++ ||+|++...+...|+
T Consensus 223 ~al~~~~~~~G~~i~~~~~V~~i~~~~-----~~~~~V~~~~g~----~~~ad~-VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 223 AAMAKLAEDLGGELRLNAEVIRIETEG-----GRATAVHLADGE----RLDADA-VVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHCCCEEEECCeEEEEEeeC-----CEEEEEEECCCC----EEECCE-EEECCcHHHHHHHhc
Confidence 335456678899999999999999876 688999988886 678987 999999877776655
No 74
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.04 E-value=1.4e-09 Score=134.96 Aligned_cols=57 Identities=25% Similarity=0.264 Sum_probs=41.4
Q ss_pred hhcCCCcEEEecceEEEEEecCCC-CCCceEEEEEEe---CCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 907 IIARPNLHVSLHSHAYRVHFEPGP-DGQMRATGVVVK---KGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 907 ~~~~~g~~i~~~~~V~~I~~~~~~-~~~~rv~GV~~~---~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
+.++.|++|++++.|++|+.+++. ...++|+||... +|+.+ .|.|+. ||||+|+++.
T Consensus 148 ~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~--~i~Ak~-VVlATGG~~~ 208 (536)
T PRK09077 148 ARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVE--TIRAKF-VVLATGGASK 208 (536)
T ss_pred HHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEE--EEecCe-EEECCCCCCC
Confidence 334569999999999999875310 012689999843 45544 788865 9999999864
No 75
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.04 E-value=3.5e-09 Score=131.53 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=47.0
Q ss_pred cCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCcHHHHHHhC
Q psy1043 285 KTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNSPQILMLSG 347 (1306)
Q Consensus 285 ~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~Sp~LLl~SG 347 (1306)
+.+.|++|+++++|+.|..+++ +++||++.+ +++...|.|+. ||+|||+ ++.+|+...|
T Consensus 159 A~~~Ga~i~~~t~V~~i~~~~~--~v~gv~v~d~~~g~~~~i~A~~-VVnAaG~-wa~~l~~~~g 219 (546)
T PRK11101 159 AKEHGAQILTYHEVTGLIREGD--TVCGVRVRDHLTGETQEIHAPV-VVNAAGI-WGQHIAEYAD 219 (546)
T ss_pred HHhCCCEEEeccEEEEEEEcCC--eEEEEEEEEcCCCcEEEEECCE-EEECCCh-hHHHHHHhcC
Confidence 4567899999999999998765 899998864 34456899977 9999996 6788776554
No 76
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.03 E-value=3.8e-09 Score=131.08 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=41.7
Q ss_pred cccCCCCeEEEeccEEEEEEecCCCCeEEEEEEE-----eCCeEEEEEEcceEEEccCCCCc
Q psy1043 283 PVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFV-----KNHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 283 ~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~-----~~g~~~~v~A~k~VVLaAGai~S 339 (1306)
..+++.+++|+.++.|++|+.++++ +++||.+. ..+....+.|+. ||||+|++..
T Consensus 152 ~~~~~~gV~i~~~~~v~~Li~~~~g-~v~Gv~~~~~~~~~~~g~~~i~Ak~-VIlATGG~~~ 211 (541)
T PRK07804 152 AAVRADPLDIREHALALDLLTDGTG-AVAGVTLHVLGEGSPDGVGAVHAPA-VVLATGGLGQ 211 (541)
T ss_pred HHHHhCCCEEEECeEeeeeEEcCCC-eEEEEEEEeccCCCCCcEEEEEcCe-EEECCCCCCC
Confidence 3445567999999999999987543 89999876 233345788865 9999999763
No 77
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.02 E-value=1.6e-09 Score=135.74 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=45.4
Q ss_pred HhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEE---eCCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 901 KAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVV---KKGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 901 ~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~---~~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
...|...+.+.|++|++++.|++|+.+++. ..++|+||.. .+|+.+ .|+|+. ||||+|+++.
T Consensus 143 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~-~~g~v~Gv~~~~~~~g~~~--~i~Aka-VVLATGG~~~ 207 (583)
T PRK08205 143 LQTLYQNCVKHGVEFFNEFYVLDLLLTETP-SGPVAAGVVAYELATGEIH--VFHAKA-VVFATGGSGR 207 (583)
T ss_pred HHHHHHHHHhcCCEEEeCCEEEEEEecCCc-cCCcEEEEEEEEcCCCeEE--EEEeCe-EEECCCCCcc
Confidence 334555667789999999999999986410 0158999984 356544 788865 9999999863
No 78
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.02 E-value=3.2e-10 Score=133.90 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCccceeeccCCcCCCcccchhHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEE
Q psy1043 860 EAFVESAGELGYEVGDINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGV 939 (1306)
Q Consensus 860 ~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV 939 (1306)
.++++.+.++|++..... .+..++ ...+.......|...+++.|++|+++++|+.|..++ +.+..|
T Consensus 80 ~d~~~ff~~~Gv~~~~~~----~gr~fP-----~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~-----~~~f~v 145 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKIEE----DGRVFP-----KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE-----DGVFGV 145 (409)
T ss_dssp HHHHHHHHHTT--EEE-S----TTEEEE-----TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET-----TEEEEE
T ss_pred HHHHHHHHhcCCeEEEcC----CCEECC-----CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC-----CceeEe
Confidence 556777788888763211 122111 112333444455567788899999999999999987 678888
Q ss_pred EEeCCeeeeEEEEeCcEEEEcCCCcchHHH
Q psy1043 940 VVKKGRKDPVLVRARREVILSAGAIGSPQV 969 (1306)
Q Consensus 940 ~~~~G~~~~~~v~A~k~VVLAAGai~sp~L 969 (1306)
++.++. .+.+++ ||||+|+...|++
T Consensus 146 ~~~~~~----~~~a~~-vILAtGG~S~p~~ 170 (409)
T PF03486_consen 146 KTKNGG----EYEADA-VILATGGKSYPKT 170 (409)
T ss_dssp EETTTE----EEEESE-EEE----SSSGGG
T ss_pred eccCcc----cccCCE-EEEecCCCCcccc
Confidence 885554 788987 9999999877764
No 79
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=3.4e-09 Score=132.12 Aligned_cols=51 Identities=14% Similarity=0.265 Sum_probs=42.2
Q ss_pred cCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCC
Q psy1043 285 KTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVN 338 (1306)
Q Consensus 285 ~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~ 338 (1306)
+.+.|++|++++.|++|+.+++ +|+||.+.+ ++....+.|+ .||||+|++.
T Consensus 146 ~~~~gv~i~~~~~~~~Li~~~g--~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 198 (566)
T PRK06452 146 TSGLNVDFYNEWFSLDLVTDNK--KVVGIVAMQMKTLTPFFFKTK-AVVLATGGMG 198 (566)
T ss_pred HHhCCCEEEeCcEEEEEEEECC--EEEEEEEEECCCCeEEEEEeC-eEEECCCccc
Confidence 3456899999999999999765 999998875 4556678885 5999999987
No 80
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.01 E-value=7.3e-09 Score=129.67 Aligned_cols=61 Identities=26% Similarity=0.274 Sum_probs=49.5
Q ss_pred cccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHH
Q psy1043 283 PVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILML 345 (1306)
Q Consensus 283 ~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~ 345 (1306)
..+++.|++|++++.|++|+.+++ +|+||.+..+++.+.+.|++.||||+|++....=|+.
T Consensus 229 ~~~~~~Gv~i~~~t~v~~Li~~~g--~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 229 YSLRARGVRILTQTDVESLETDHG--RVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred HHHHhCCCEEEeCCEEEEEEeeCC--EEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHH
Confidence 345567899999999999998754 9999998877777788987779999999987544443
No 81
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=4.5e-09 Score=130.94 Aligned_cols=55 Identities=24% Similarity=0.348 Sum_probs=43.7
Q ss_pred cccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 283 PVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 283 ~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
..+.+.|++|++++.|++|+.+++ ++++||.+.. ++....+.|+ .||||+|++..
T Consensus 142 ~~~~~~gv~i~~~t~v~~Li~~~~-~~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~ 198 (543)
T PRK06263 142 EYLIKERIKILEEVMAIKLIVDEN-REVIGAIFLDLRNGEIFPIYAK-ATILATGGAGQ 198 (543)
T ss_pred HHHhcCCCEEEeCeEeeeeEEeCC-cEEEEEEEEECCCCcEEEEEcC-cEEECCCCCCC
Confidence 334568999999999999998765 2699998764 5666778885 59999999874
No 82
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.01 E-value=3.5e-09 Score=132.86 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=41.6
Q ss_pred hhhhhhcCC-CcEEEecceEEEEEecCCCCCCceEEEEEE---eCCeeeeEEEEeCcEEEEcCCCcc
Q psy1043 903 YLRPIIARP-NLHVSLHSHAYRVHFEPGPDGQMRATGVVV---KKGRKDPVLVRARREVILSAGAIG 965 (1306)
Q Consensus 903 ~L~~~~~~~-g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~---~~G~~~~~~v~A~k~VVLAAGai~ 965 (1306)
.|...+++. |++|+.++.|++|+.++ ++|+||.. .+++.. .+.|+. ||||+|+++
T Consensus 137 ~L~~~a~~~ggV~i~~~~~v~~Li~~~-----g~v~Gv~~~~~~~g~~~--~i~Aka-VILATGG~~ 195 (608)
T PRK06854 137 IVAEAAKKALGDNVLNRVFITDLLVDD-----NRIAGAVGFSVRENKFY--VFKAKA-VIVATGGAA 195 (608)
T ss_pred HHHHHHHhcCCCEEEeCCEEEEEEEeC-----CEEEEEEEEEccCCcEE--EEECCE-EEECCCchh
Confidence 343445444 59999999999999876 68999863 355544 788865 999999986
No 83
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.01 E-value=4.4e-09 Score=131.17 Aligned_cols=35 Identities=43% Similarity=0.625 Sum_probs=33.3
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
.++||||||+|.+|+++|..+++ .|.+|+||||++
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~-~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELAD-AGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 57999999999999999999999 799999999996
No 84
>PLN02815 L-aspartate oxidase
Probab=99.00 E-value=3.3e-09 Score=131.77 Aligned_cols=55 Identities=16% Similarity=0.304 Sum_probs=42.7
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCC--eEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNR--MAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~--~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
+.+.+|++|++++.|++|+.+++++ +|+||.+.. ++....+.|+ .||||+|++..
T Consensus 165 ~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~ 223 (594)
T PLN02815 165 VKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISK-VTLLASGGAGH 223 (594)
T ss_pred HHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEec-eEEEcCCccee
Confidence 3345699999999999999875432 489998853 5666778885 59999999863
No 85
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.00 E-value=1.4e-09 Score=129.07 Aligned_cols=194 Identities=24% Similarity=0.289 Sum_probs=109.0
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCCCCCCCcchhhHHhhhcCCCCCccccccCcccccccCCCeeeecCcc
Q psy1043 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDISDVPVLAAYLQLSGLDWSYKTEPSSTSCLAMEHNRCNWPRGK 160 (1306)
Q Consensus 81 DvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (1306)
||||||+|.+|+++|++|++ .|++|+|||++. .
T Consensus 1 DvvIIGaGi~G~~~A~~La~-~G~~V~l~e~~~-~--------------------------------------------- 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-RGHSVTLLERGD-I--------------------------------------------- 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-TTSEEEEEESSS-T---------------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHH-CCCeEEEEeecc-c---------------------------------------------
Confidence 89999999999999999999 899999999983 1
Q ss_pred cccCcccccceEEecCC--hh--hHHHHHhcCCCCCChhhHHHHHHHhccCCCCCCCCCCCCCCCCceeeecCCCccHHH
Q psy1043 161 VVGGSSVLNYMLYVRGN--RN--DYNHWESLGNPGWGAAEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPLA 236 (1306)
Q Consensus 161 ~lGGsS~~n~~~~~r~~--~~--d~~~w~~~g~~~w~~~~~~~y~~~~e~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 236 (1306)
.+|.|..+++++.... .. .+..... +...++++...... ........|.+.+...+......
T Consensus 34 -~~~aS~~~~g~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~----~~~~~~~~g~l~~~~~~~~~~~~ 99 (358)
T PF01266_consen 34 -GSGASGRSGGLVRPGISSYPDPQYARLAR---------ESVEFWRELAEEYG----IPVGFRPCGSLYLAEDEEDAESL 99 (358)
T ss_dssp -TSSGGGSSSEEEECSGSHHSSHHHHHHHH---------HHHHHHHHHHHHTT----SSCEEEECEEEEEESSHHHHHHH
T ss_pred -cccccccccccccccccccccccccchhh---------hhccchhhhhhhcC----cccccccccccccccchhhhhhc
Confidence 1355666666665541 11 1111111 11222333211111 01111133555555444344445
Q ss_pred HHHHHHHHHcCCCCC------------CCCCCCccceeeecccccCCccc--chhhhccccccCCCCeEEEeccEEEEEE
Q psy1043 237 EAFVRGGEELGYENR------------DINGEYQTGFMVAQGTVRNGARC--STSKAFLQPVKTRPNLHISLHSHVTKVL 302 (1306)
Q Consensus 237 ~~~~~~~~~~G~~~~------------~~~~~~~~g~~~~~~~~~~g~r~--s~~~~~l~~~~~~~nl~I~~~~~V~~I~ 302 (1306)
+.+.+..+..|++.. ..+.....++.. ..+... ......|...+++.|++|+++++|++|.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-----~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~ 174 (358)
T PF01266_consen 100 ERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFF-----PEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSID 174 (358)
T ss_dssp HHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEE-----TTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEE
T ss_pred cccccccccccccccccchhhhhhhhcccccchhhhhcc-----cccccccccchhhhhHHHHHHhhhhccccccccchh
Confidence 566777777777411 111111111111 111111 1111223334456699999999999999
Q ss_pred ecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHHhCC
Q psy1043 303 IDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSGI 348 (1306)
Q Consensus 303 ~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~SGi 348 (1306)
.+++ +++||...+ . .++|+. ||+|+|+ +|++|+..+|+
T Consensus 175 ~~~~--~v~gv~~~~--g--~i~ad~-vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 175 VDGG--RVTGVRTSD--G--EIRADR-VVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp EETT--EEEEEEETT--E--EEEECE-EEE--GG-GHHHHHHTTTT
T ss_pred hccc--ccccccccc--c--ccccce-eEecccc-cceeeeecccc
Confidence 9887 788887632 2 388876 9999996 78888877754
No 86
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.00 E-value=1.3e-09 Score=134.34 Aligned_cols=55 Identities=27% Similarity=0.423 Sum_probs=41.9
Q ss_pred hhhhhc-CCCcEEEecceEEEEEecCCCCCCceEEEEEEe-CCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 904 LRPIIA-RPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK-KGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 904 L~~~~~-~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~-~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
|...+. +.|++|+.++.|++|+.++ ++|+||.+. ++..+ .+.|+. ||||+|+++.
T Consensus 142 L~~~~~~~~gV~i~~~~~v~~Li~~~-----g~v~Gv~~~~~~~~~--~i~Ak~-VVLATGG~~~ 198 (513)
T PRK07512 142 LIAAVRATPSITVLEGAEARRLLVDD-----GAVAGVLAATAGGPV--VLPARA-VVLATGGIGG 198 (513)
T ss_pred HHHHHHhCCCCEEEECcChhheeecC-----CEEEEEEEEeCCeEE--EEECCE-EEEcCCCCcC
Confidence 333444 4589999999999998776 799999854 34434 688876 9999999864
No 87
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.00 E-value=7.6e-09 Score=129.65 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=48.2
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHH
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILML 345 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~ 345 (1306)
.+++.|++|++++.|++|+.+++ +|+||.+...+....+.+++.||||+|++....-++.
T Consensus 223 ~~~~~Gv~i~~~~~v~~l~~~~g--~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~~ 282 (574)
T PRK12842 223 SALDLGIPILTGTPARELLTEGG--RVVGARVIDAGGERRITARRGVVLACGGFSHDLARIA 282 (574)
T ss_pred HHHhCCCEEEeCCEEEEEEeeCC--EEEEEEEEcCCceEEEEeCCEEEEcCCCccchHHHHH
Confidence 34577999999999999998865 9999998765555678898779999999875555443
No 88
>PRK08275 putative oxidoreductase; Provisional
Probab=98.99 E-value=3.7e-09 Score=131.88 Aligned_cols=59 Identities=27% Similarity=0.363 Sum_probs=44.9
Q ss_pred HhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEE---eCCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 901 KAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVV---KKGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 901 ~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~---~~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
...|...+++.|++|++++.|++|+.+++ +++.||.. .+|... .++|+. ||||+|+++.
T Consensus 140 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~----g~v~Gv~~~~~~~g~~~--~i~Ak~-VIlATGG~~~ 201 (554)
T PRK08275 140 KKVLYRQLKRARVLITNRIMATRLLTDAD----GRVAGALGFDCRTGEFL--VIRAKA-VILCCGAAGR 201 (554)
T ss_pred HHHHHHHHHHCCCEEEcceEEEEEEEcCC----CeEEEEEEEecCCCcEE--EEECCE-EEECCCCccc
Confidence 34455566778999999999999998731 68999983 256544 688865 9999999863
No 89
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.99 E-value=5e-09 Score=130.95 Aligned_cols=54 Identities=11% Similarity=0.157 Sum_probs=43.4
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
.+.+.|++|++++.|++|+.++++ +|+||.+.+ ++....+.|+ .||||+|++..
T Consensus 152 ~~~~~gi~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 207 (588)
T PRK08958 152 QNLKNHTTIFSEWYALDLVKNQDG-AVVGCTAICIETGEVVYFKAR-ATVLATGGAGR 207 (588)
T ss_pred HhhhcCCEEEeCcEEEEEEECCCC-EEEEEEEEEcCCCcEEEEEcC-eEEECCCCccc
Confidence 344678999999999999986433 999998853 6666778885 59999999875
No 90
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.98 E-value=1.8e-09 Score=135.06 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=40.5
Q ss_pred cCCCcEEEecceEEEEEecCCCCCCceEEEEEEe---CCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 909 ARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK---KGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 909 ~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~---~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
++.|++|++++.|++|+.+++ ++|+||... +|..+ .+.|+. ||||+|+++.
T Consensus 144 ~~~gV~i~~~t~v~~Li~dd~----grV~GV~~~~~~~g~~~--~i~Aka-VVLATGG~g~ 197 (603)
T TIGR01811 144 AAGLVEKYEGWEMLDIIVVDG----NRARGIIARNLVTGEIE--THSADA-VILATGGYGN 197 (603)
T ss_pred ccCCcEEEeCcEEEEEEEcCC----CEEEEEEEEECCCCcEE--EEEcCE-EEECCCCCcC
Confidence 345899999999999998641 589999954 45544 788875 9999999864
No 91
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.98 E-value=1e-08 Score=128.41 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=48.7
Q ss_pred cccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHH
Q psy1043 283 PVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILM 344 (1306)
Q Consensus 283 ~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl 344 (1306)
..+++.|++|++++.|++|+.+++ +++||.+..++....++|++.||||+|++....-++
T Consensus 225 ~~a~~~Gv~i~~~t~v~~l~~~~g--~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 225 KSAEDLGVRIWESAPARELLREDG--RVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPARR 284 (581)
T ss_pred HHHHhCCCEEEcCCEEEEEEEeCC--EEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHHH
Confidence 345677999999999999998754 899999877666677999666999999998755543
No 92
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.97 E-value=2.9e-08 Score=114.17 Aligned_cols=100 Identities=23% Similarity=0.280 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHcCCCCCCCC-CCC----ccceeeccCCcCCCcccc-hhHhhhhhhhcCCCcEEEecceEEEEEecCCCC
Q psy1043 858 VTEAFVESAGELGYEVGDIN-GER----QTGFTRAHGTLKNGLRCS-TAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPD 931 (1306)
Q Consensus 858 ~~~~~~~~~~~~G~~~~~~~-~~~----~~g~~~~~~~~~~g~~~~-~~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~ 931 (1306)
.....++++.+.|+++..-. +.. -.+++....-...+.... ...+++..+.+++|++|+.++.+.+|++++
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~--- 164 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIED--- 164 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcC---
Confidence 34555677778899883322 211 112222111112222222 233344445567999999999999999998
Q ss_pred CCc-eEEEEEEeCC--eeeeEEEEeCcEEEEcCCCcc
Q psy1043 932 GQM-RATGVVVKKG--RKDPVLVRARREVILSAGAIG 965 (1306)
Q Consensus 932 ~~~-rv~GV~~~~G--~~~~~~v~A~k~VVLAAGai~ 965 (1306)
+ .+.||.+.+. +.. .++|+. ||||+|+++
T Consensus 165 --~~~~~Gv~~~~~~~~~~--~~~a~~-vVLATGG~g 196 (518)
T COG0029 165 --GIGVAGVLVLNRNGELG--TFRAKA-VVLATGGLG 196 (518)
T ss_pred --CceEeEEEEecCCCeEE--EEecCe-EEEecCCCc
Confidence 5 5569996443 334 889987 999999984
No 93
>PRK12839 hypothetical protein; Provisional
Probab=98.97 E-value=1.1e-08 Score=127.33 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=46.6
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHH
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQIL 343 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LL 343 (1306)
.+.+.|++|++++.|++|+.++++ +|+||.+...+....+.+++.||||+|++..-.-|
T Consensus 223 ~a~~~Gv~i~~~t~v~~Li~~~~g-~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~ 281 (572)
T PRK12839 223 SADDLGVDLRVSTSATSLTTDKNG-RVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDR 281 (572)
T ss_pred HHHHCCCEEEcCCEEEEEEECCCC-cEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHH
Confidence 445678999999999999986543 89999987655556777877799999999874443
No 94
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.96 E-value=7.6e-09 Score=129.79 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=42.9
Q ss_pred cCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 285 KTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 285 ~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
+.+.|++|+.++.|++|+.++++ ++.||.+.. ++....+.|+. ||||+|++..
T Consensus 197 a~~~gv~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~Aka-VILATGG~g~ 251 (635)
T PLN00128 197 AMKHNTQFFVEYFALDLIMDSDG-ACQGVIALNMEDGTLHRFRAHS-TILATGGYGR 251 (635)
T ss_pred HHhCCCEEEEeeEEEEEEEcCCC-EEEEEEEEEcCCCeEEEEEcCe-EEECCCCCcc
Confidence 34568999999999999987433 899998854 56667888865 9999999875
No 95
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.96 E-value=8.4e-09 Score=129.34 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=43.7
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
.+.+.|++|++++.|++|+.++++ +|+||.+.. ++..+.+.|+ .||||+|++..
T Consensus 158 ~~~~~gi~i~~~~~v~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 213 (598)
T PRK09078 158 QSLKHNAEFFIEYFALDLIMDDGG-VCRGVVAWNLDDGTLHRFRAH-MVVLATGGYGR 213 (598)
T ss_pred HHhhcCCEEEEeEEEEEEEEcCCC-EEEEEEEEECCCCcEEEEEcC-EEEECCCCCcc
Confidence 345678999999999999987533 899998753 5666788886 49999999875
No 96
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.96 E-value=7.2e-09 Score=126.59 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCccceeeccCCcCCCcccchhHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEE
Q psy1043 860 EAFVESAGELGYEVGDINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGV 939 (1306)
Q Consensus 860 ~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV 939 (1306)
...++++.++|+++.... ...+....................|...+++.|++++.+ .|++|+.++ ++++||
T Consensus 84 ~~~i~~L~~~Gv~f~~~~--~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~-----g~v~Gv 155 (466)
T PRK08401 84 SEAYDFLTSLGLEFEGNE--LEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKN-----GKAYGV 155 (466)
T ss_pred HHHHHHHHHcCCCcccCC--CcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC-----CEEEEE
Confidence 445566777888874211 111211111111111112233344555667789999876 899988765 689998
Q ss_pred EEeCCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 940 VVKKGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 940 ~~~~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
.. ++. .+.++. ||||+|++..
T Consensus 156 ~~-~g~----~i~a~~-VVLATGG~~~ 176 (466)
T PRK08401 156 FL-DGE----LLKFDA-TVIATGGFSG 176 (466)
T ss_pred EE-CCE----EEEeCe-EEECCCcCcC
Confidence 86 443 678876 9999999865
No 97
>KOG4254|consensus
Probab=98.95 E-value=3.4e-09 Score=118.80 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=51.9
Q ss_pred hhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHhcC
Q psy1043 903 YLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYLI 972 (1306)
Q Consensus 903 ~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LLl~ 972 (1306)
.+.+.+++.|.+|.+++.|.+|++|+ +++.||.++||+ +|+++ .||-.|+-+.|-.-|+-
T Consensus 269 aia~~~~~~GaeI~tka~Vq~Illd~-----gka~GV~L~dG~----ev~sk-~VvSNAt~~~Tf~kLlp 328 (561)
T KOG4254|consen 269 AIAEGAKRAGAEIFTKATVQSILLDS-----GKAVGVRLADGT----EVRSK-IVVSNATPWDTFEKLLP 328 (561)
T ss_pred HHHHHHHhccceeeehhhhhheeccC-----CeEEEEEecCCc----EEEee-eeecCCchHHHHHHhCC
Confidence 45678899999999999999999998 899999999998 77884 49999999988855553
No 98
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.95 E-value=4.6e-09 Score=122.53 Aligned_cols=201 Identities=22% Similarity=0.215 Sum_probs=112.8
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCC--CEEEEECCCCCCCCCCCCCCCCccccCCCCCCCCccccCccccccCCCCeee
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKN--WKVLLLEAGGEESPLSDIPCTYPALQTSPLDWQYKTEPNDRACLGLNGRRSN 778 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G--~~VlVLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1306)
.+|||||||+|+.|+++|++|++ .+ ++|+||||-......++. .+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~-~~p~~~V~llEk~~~~a~~sS~-----------~N--------------------- 48 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSE-YEPDLSVALLEKEDGVAQESSS-----------NN--------------------- 48 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHH-hCCCceEEEEEccCcccccccc-----------Cc---------------------
Confidence 47999999999999999999999 36 999999998743322110 00
Q ss_pred cCCcceecchhHhccceeecCChhhHH-HHHHcCCCCCCcccchHHHHHhhhccCCCCCCCCCCCCCCCcccccCCCCCh
Q psy1043 779 WPRGKVIGGSSVLNAMLYVRGNRRDYD-AWEAAGNEGWSYRDTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFRYYSP 857 (1306)
Q Consensus 779 ~~~g~~lGG~S~~~~~~~~r~~~~d~~-~w~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 857 (1306)
+.++..+.+..+. ++. +....++ ..+|+-+.++. .++. ..+.+.+.......+
T Consensus 49 ---------SgviHag~~y~p~--slka~l~~~g~--------~~~~~~~kq~~------~~f~-~~g~l~vA~~e~e~~ 102 (429)
T COG0579 49 ---------SGVIHAGLYYTPG--SLKAKLCVAGN--------INEFAICKQLG------IPFI-NCGKLSVATGEEEVE 102 (429)
T ss_pred ---------ccceeccccCCCc--chhhHHHHHHH--------HHHHHHHHHhC------Cccc-ccCeEEEEEChHHHH
Confidence 0011112211111 110 0111111 11233333332 1122 225677777777778
Q ss_pred HHHHHHHHHHHcCCC-CCCCCCCC-----------ccceeeccCCcCCCcccchhHhhhhhhhcCCCcEEEecceEEEEE
Q psy1043 858 VTEAFVESAGELGYE-VGDINGER-----------QTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVH 925 (1306)
Q Consensus 858 ~~~~~~~~~~~~G~~-~~~~~~~~-----------~~g~~~~~~~~~~g~~~~~~~~~L~~~~~~~g~~i~~~~~V~~I~ 925 (1306)
.++.+.+.+.+.|+. ...++... ..+......+.... ......+ |...+...|++|.+|++|+.|.
T Consensus 103 ~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~-~~~~t~~-l~e~a~~~g~~i~ln~eV~~i~ 180 (429)
T COG0579 103 RLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVD-PGELTRA-LAEEAQANGVELRLNTEVTGIE 180 (429)
T ss_pred HHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEc-HHHHHHH-HHHHHHHcCCEEEecCeeeEEE
Confidence 888888888888887 21111110 11111111110000 1112223 3345566699999999999999
Q ss_pred ecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHhcC
Q psy1043 926 FEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYLI 972 (1306)
Q Consensus 926 ~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LLl~ 972 (1306)
.++ +.++-+.+.+|+. +++|+. ||.|||.. +-.|+..
T Consensus 181 ~~~-----dg~~~~~~~~g~~---~~~ak~-Vin~AGl~-Ad~la~~ 217 (429)
T COG0579 181 KQS-----DGVFVLNTSNGEE---TLEAKF-VINAAGLY-ADPLAQM 217 (429)
T ss_pred EeC-----CceEEEEecCCcE---EEEeeE-EEECCchh-HHHHHHH
Confidence 987 2366666778863 278976 99999976 4555544
No 99
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.95 E-value=8e-09 Score=129.71 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=43.0
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
.+.+.|++|++++.|++|+.++++ +|.||.+.. ++....+.|+. ||||+|++..
T Consensus 175 ~a~~~gv~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~Aka-VVLATGG~~~ 230 (617)
T PTZ00139 175 QSLKYDCNFFIEYFALDLIMDEDG-ECRGVIAMSMEDGSIHRFRAHY-TVIATGGYGR 230 (617)
T ss_pred HHHhCCCEEEeceEEEEEEECCCC-EEEEEEEEECCCCeEEEEECCc-EEEeCCCCcc
Confidence 345679999999999999984333 899998753 56667788865 9999999874
No 100
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.94 E-value=1.5e-08 Score=126.02 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=42.0
Q ss_pred hhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEE---eCCeeeeEEEEeCcEEEEcCCCcc
Q psy1043 904 LRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVV---KKGRKDPVLVRARREVILSAGAIG 965 (1306)
Q Consensus 904 L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~---~~G~~~~~~v~A~k~VVLAAGai~ 965 (1306)
+...+.+.+++|+.++.|++|+.+++ ..++|+||.. .+|+.+ .|.|+. ||||+|+++
T Consensus 132 l~~~l~~~~~~i~~~~~v~~Ll~d~~--~~GrV~Gv~~~~~~~g~~~--~i~Aka-VVLATGG~~ 191 (614)
T TIGR02061 132 VAEAAKNALGDIFERIFIVKLLLDKN--TPNRIAGAVGFNVRANEVH--VFKAKT-VIVAAGGAV 191 (614)
T ss_pred HHHHHHhCCCeEEcccEEEEEEecCC--CCCeEEEEEEEEeCCCcEE--EEECCE-EEECCCccc
Confidence 33344455689999999999998641 1158999984 356555 788875 999999986
No 101
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.94 E-value=1.3e-08 Score=136.35 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=43.7
Q ss_pred CCCeEEEeccEEEEEEecCC----C---CeEEEEEEEe----CCeEEEEEEcceEEEccCCCCcHH
Q psy1043 287 RPNLHISLHSHVTKVLIDPK----N---RMAIGVEFVK----NHQRHVIRARKEVILSGGAVNSPQ 341 (1306)
Q Consensus 287 ~~nl~I~~~~~V~~I~~d~~----~---~~~~GV~~~~----~g~~~~v~A~k~VVLaAGai~Sp~ 341 (1306)
+.|++|++++.|++|+.+++ + ++|+||++.. +++...+.|+ .||||+|+++...
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~Ak-aVILATGGf~~N~ 623 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLAD-AVILATGGFSNDH 623 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEec-eEEEecCCcccCc
Confidence 36899999999999999752 2 3899999975 4666788885 5999999998753
No 102
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.93 E-value=6.8e-09 Score=130.92 Aligned_cols=54 Identities=9% Similarity=0.106 Sum_probs=44.0
Q ss_pred cccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 283 PVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 283 ~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
..+.+.|++|+.++.|++|+.+++ ++.||.+.+ ++....+.|+. ||||+|++..
T Consensus 166 ~~~~~~gv~i~~~~~~~~Li~~~g--~v~Gv~~~~~~~G~~~~i~Aka-VVLATGG~g~ 221 (657)
T PRK08626 166 NEAIKLGVPVHDRKEAIALIHDGK--RCYGAVVRCLITGELRAYVAKA-TLIATGGYGR 221 (657)
T ss_pred HHHHhCCCEEEeeEEEEEEEEECC--EEEEEEEEEcCCCcEEEEEcCe-EEECCCcccC
Confidence 334567999999999999998765 999998874 66667788864 9999998864
No 103
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.93 E-value=1.8e-08 Score=126.21 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=39.7
Q ss_pred CCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 288 PNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 288 ~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
.+++|+.++.|++|+.++++ +|+||.+.+ ++....+.|+ .||||+|++..
T Consensus 150 ~~i~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 201 (589)
T PRK08641 150 GLVTKYEGWEFLGAVLDDEG-VCRGIVAQDLFTMEIESFPAD-AVIMATGGPGI 201 (589)
T ss_pred CCcEEEeeEEEEEEEECCCC-EEEEEEEEECCCCcEEEEECC-EEEECCCCCcC
Confidence 35899999999999986433 899999875 4455667775 59999999875
No 104
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.91 E-value=1.1e-08 Score=127.97 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=42.6
Q ss_pred cccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 283 PVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 283 ~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
..+.+.|++|++++.|++|+.+++ ++.||.... ++....+.|+. ||||+|++..
T Consensus 143 ~~~~~~gi~i~~~t~v~~L~~~~g--~v~Gv~~~~~~~g~~~~i~Aka-VVlATGG~~~ 198 (575)
T PRK05945 143 NNLRRYGVTIYDEWYVMRLILEDN--QAKGVVMYHIADGRLEVVRAKA-VMFATGGYGR 198 (575)
T ss_pred HHHhhCCCEEEeCcEEEEEEEECC--EEEEEEEEEcCCCeEEEEECCE-EEECCCCCcC
Confidence 334567999999999999998755 899998643 55556788864 9999999864
No 105
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.91 E-value=1.6e-08 Score=124.41 Aligned_cols=50 Identities=22% Similarity=0.332 Sum_probs=41.3
Q ss_pred CCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCc
Q psy1043 287 RPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 287 ~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~S 339 (1306)
.+|++|++++.|++|+.+++ +++||.+...+....+.|+. ||||+|++..
T Consensus 141 ~~gi~i~~~~~v~~l~~~~g--~v~Gv~~~~~~~~~~i~A~~-VVlAtGG~~~ 190 (488)
T TIGR00551 141 HPNIRIIEGENALDLLIETG--RVVGVWVWNRETVETCHADA-VVLATGGAGK 190 (488)
T ss_pred cCCcEEEECeEeeeeeccCC--EEEEEEEEECCcEEEEEcCE-EEECCCcccC
Confidence 47999999999999998755 89999887655556788865 9999999864
No 106
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.91 E-value=1.3e-08 Score=123.03 Aligned_cols=33 Identities=21% Similarity=0.458 Sum_probs=31.5
Q ss_pred ccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 703 yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+||||||||+.|+++|++|++. |.+|+||||+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 6999999999999999999995 99999999986
No 107
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.90 E-value=9.5e-08 Score=118.14 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=49.5
Q ss_pred hhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHhc
Q psy1043 902 AYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYL 971 (1306)
Q Consensus 902 ~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LLl 971 (1306)
..|...+++.|++|+++++|++|..++ +++.+|++.+|+ ++.|+. ||+|+|...+-..|+
T Consensus 233 ~~L~~~~~~~G~~i~~~~~V~~I~~~~-----~~~~gv~~~~g~----~~~ad~-vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 233 ESLVKGLEKHGGQIRYRARVTKIILEN-----GKAVGVKLADGE----KIYAKR-IVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHHHCCCEEEeCCeeeEEEecC-----CcEEEEEeCCCC----EEEcCE-EEECCChHHHHHHhC
Confidence 335567788899999999999999886 689999988886 678987 999999877765554
No 108
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.90 E-value=1.4e-08 Score=121.72 Aligned_cols=33 Identities=39% Similarity=0.580 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 703 yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
|||||||+|++|+++|++|++. |++|+|||++.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~ 33 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFD 33 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccC
Confidence 7999999999999999999994 99999999975
No 109
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.90 E-value=7.9e-09 Score=125.39 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=42.5
Q ss_pred hhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHh
Q psy1043 904 LRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVY 970 (1306)
Q Consensus 904 L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LL 970 (1306)
|...+++.|++|+++++|++|..++ +++++|.+.++ ++++++ ||+|+|++. ..|+
T Consensus 207 l~~~~~~~G~~i~~~~~V~~i~~~~-----~~~~~v~t~~~-----~~~a~~-VV~a~G~~~-~~l~ 261 (416)
T PRK00711 207 LAAMAEQLGVKFRFNTPVDGLLVEG-----GRITGVQTGGG-----VITADA-YVVALGSYS-TALL 261 (416)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecC-----CEEEEEEeCCc-----EEeCCE-EEECCCcch-HHHH
Confidence 4446677899999999999998876 57777876655 678987 999999874 4443
No 110
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.90 E-value=1.4e-08 Score=122.82 Aligned_cols=33 Identities=21% Similarity=0.458 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
+||||||||..|+++|++|++ .|++|+||||+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~-~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQ-RGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 699999999999999999999 699999999986
No 111
>PLN02661 Putative thiazole synthesis
Probab=98.90 E-value=9.6e-09 Score=116.59 Aligned_cols=35 Identities=43% Similarity=0.566 Sum_probs=32.5
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
++||+|||+|++|+++|+.|++++|++|+||||+.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 69999999999999999999975599999999975
No 112
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.89 E-value=1.6e-07 Score=112.82 Aligned_cols=35 Identities=40% Similarity=0.599 Sum_probs=33.0
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
.++||||||+|++|+++|++|++ .|.+|+|+|++.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~-~G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAE-RGADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHH-cCCEEEEEecCc
Confidence 57999999999999999999999 499999999986
No 113
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.89 E-value=8.8e-08 Score=118.61 Aligned_cols=60 Identities=20% Similarity=0.112 Sum_probs=45.9
Q ss_pred hhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCe---eeeEEEEeCcEEEEcCCCcchHHHh
Q psy1043 903 YLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGR---KDPVLVRARREVILSAGAIGSPQVY 970 (1306)
Q Consensus 903 ~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~---~~~~~v~A~k~VVLAAGai~sp~LL 970 (1306)
.|...+++.|++|+++++|++|+.++ +++++|.+.++. .. .+.|+. ||+++....+.+||
T Consensus 237 aL~~~~~~~G~~i~~~~~V~~I~~~~-----~~~~gv~~~~~~~~~~~--~~~ad~-VI~~~~~~~~~~ll 299 (492)
T TIGR02733 237 RLVEALKRDGGNLLTGQRVTAIHTKG-----GRAGWVVVVDSRKQEDL--NVKADD-VVANLPPQSLLELL 299 (492)
T ss_pred HHHHHHHhcCCEEeCCceEEEEEEeC-----CeEEEEEEecCCCCceE--EEECCE-EEECCCHHHHHHhc
Confidence 35556667899999999999999987 678888865541 23 678987 99999987666644
No 114
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.88 E-value=1.8e-08 Score=126.50 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=41.8
Q ss_pred cCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 285 KTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 285 ~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
+.+.|++|++++.|++|+.+++ +++||.+.. ++....+.|+ .||||+|++..
T Consensus 139 ~~~~gv~i~~~~~v~~L~~~~g--~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGG~~~ 192 (566)
T TIGR01812 139 CLKLGVSFFNEYFALDLIHDDG--RVRGVVAYDLKTGEIVFFRAK-AVVLATGGYGR 192 (566)
T ss_pred HHHcCCEEEeccEEEEEEEeCC--EEEEEEEEECCCCcEEEEECC-eEEECCCcccC
Confidence 4455999999999999998755 999998754 4555678885 59999999864
No 115
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.88 E-value=2.4e-08 Score=125.42 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=39.5
Q ss_pred CCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCC
Q psy1043 286 TRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVN 338 (1306)
Q Consensus 286 ~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~ 338 (1306)
+..|++|+.++.|++|+.+++ +++||.+.. ++....+.|+. ||||+|++.
T Consensus 144 ~~ggV~i~~~~~v~~Li~~~g--~v~Gv~~~~~~~g~~~~i~Aka-VILATGG~~ 195 (608)
T PRK06854 144 KALGDNVLNRVFITDLLVDDN--RIAGAVGFSVRENKFYVFKAKA-VIVATGGAA 195 (608)
T ss_pred hcCCCEEEeCCEEEEEEEeCC--EEEEEEEEEccCCcEEEEECCE-EEECCCchh
Confidence 345699999999999998765 899997643 45556788864 999999875
No 116
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.88 E-value=2e-08 Score=126.61 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=39.5
Q ss_pred CeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 289 NLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 289 nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
|++|+.++.|++|+.+++ ++.||.... ++....+.|+. ||||+|++..
T Consensus 165 ~v~i~~~~~v~~L~~~~g--~v~Gv~~~~~~~g~~~~i~Ak~-VVlATGG~~~ 214 (626)
T PRK07803 165 RIKVFAECTITELLKDGG--RIAGAFGYWRESGRFVLFEAPA-VVLATGGIGK 214 (626)
T ss_pred ceEEEeCCEEEEEEEECC--EEEEEEEEECCCCeEEEEEcCe-EEECCCcccC
Confidence 399999999999998755 899998753 56666788865 9999999764
No 117
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.88 E-value=2.7e-08 Score=123.57 Aligned_cols=55 Identities=18% Similarity=0.388 Sum_probs=42.8
Q ss_pred ccCCCCeEEEeccEEEEEEecC----CCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDP----KNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~----~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
+.+.+|++|++++.|++|+.++ ++++++||.+.+ ++....|.|+ .||||+|++..
T Consensus 148 ~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~ 208 (536)
T PRK09077 148 ARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAK-FVVLATGGASK 208 (536)
T ss_pred HHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecC-eEEECCCCCCC
Confidence 3456799999999999999864 123899999864 4566678885 59999999864
No 118
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.88 E-value=1.2e-08 Score=113.83 Aligned_cols=34 Identities=32% Similarity=0.449 Sum_probs=32.4
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+|||||||+|++|+++|++|++ +|++|+|||+..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~-~G~~V~liEk~~ 58 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK-AGLKVAVFERKL 58 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh-CCCeEEEEecCC
Confidence 6999999999999999999999 599999999985
No 119
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.87 E-value=6.6e-09 Score=116.92 Aligned_cols=36 Identities=28% Similarity=0.624 Sum_probs=33.7
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~ 114 (1306)
+.+||||||+|+||+.+|..+++ .|.+|+|||+++.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~-~G~~V~lid~~~k 37 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAK-AGRRVLLIDKGPK 37 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhh-cCCEEEEEecCcc
Confidence 46999999999999999999999 8999999999974
No 120
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.87 E-value=1.8e-08 Score=124.27 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=41.9
Q ss_pred CCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCc
Q psy1043 286 TRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 286 ~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~S 339 (1306)
+++|++|+.++.|++|+.+++ +++||.+...+....+.|+. ||||+|++..
T Consensus 148 ~~~gV~i~~~~~v~~Li~~~g--~v~Gv~~~~~~~~~~i~Ak~-VVLATGG~~~ 198 (513)
T PRK07512 148 ATPSITVLEGAEARRLLVDDG--AVAGVLAATAGGPVVLPARA-VVLATGGIGG 198 (513)
T ss_pred hCCCCEEEECcChhheeecCC--EEEEEEEEeCCeEEEEECCE-EEEcCCCCcC
Confidence 456899999999999987754 89999887665556788865 9999999864
No 121
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=2.9e-08 Score=124.45 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=44.0
Q ss_pred cccccCCCCeEEEeccEEEEEEecCC--CCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 281 LQPVKTRPNLHISLHSHVTKVLIDPK--NRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 281 l~~~~~~~nl~I~~~~~V~~I~~d~~--~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
|...+.+.|++|++++.|++|+.+++ +++++||.... ++....+.|+. ||||+|++..
T Consensus 146 L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~Aka-VVLATGG~~~ 207 (583)
T PRK08205 146 LYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKA-VVFATGGSGR 207 (583)
T ss_pred HHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCe-EEECCCCCcc
Confidence 33345567999999999999998752 12899998753 55556788865 9999999864
No 122
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.86 E-value=2.8e-08 Score=124.25 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=41.7
Q ss_pred cCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 285 KTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 285 ~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
.+.+|++|++++.|++|+.+++ ++.||.+.. ++....+.|+ .||||+|++..
T Consensus 144 ~~~~~i~i~~~~~v~~Li~~~g--~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~ 197 (582)
T PRK09231 144 LKYPQIQRFDEHFVLDILVDDG--HVRGLVAMNMMEGTLVQIRAN-AVVMATGGAGR 197 (582)
T ss_pred hcCCCcEEEeCeEEEEEEEeCC--EEEEEEEEEcCCCcEEEEECC-EEEECCCCCcC
Confidence 3446899999999999998765 899998753 5556678886 49999999764
No 123
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=2.6e-08 Score=125.04 Aligned_cols=52 Identities=19% Similarity=0.283 Sum_probs=41.7
Q ss_pred cCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 285 KTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 285 ~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
.+..|++|+.++.|++|+.+++ +++||.+.. ++....+.|+. ||||+|++..
T Consensus 148 ~~~~gv~i~~~~~v~~Li~~~g--~v~Gv~~~~~~~g~~~~i~Ak~-VIlATGG~~~ 201 (577)
T PRK06069 148 LRFDNIHFYDEHFVTSLIVENG--VFKGVTAIDLKRGEFKVFQAKA-GIIATGGAGR 201 (577)
T ss_pred HhcCCCEEEECCEEEEEEEECC--EEEEEEEEEcCCCeEEEEECCc-EEEcCchhcc
Confidence 3447899999999999998765 899998754 45556788865 9999999853
No 124
>PRK08275 putative oxidoreductase; Provisional
Probab=98.85 E-value=2.3e-08 Score=124.75 Aligned_cols=56 Identities=29% Similarity=0.287 Sum_probs=43.0
Q ss_pred cccccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCC
Q psy1043 281 LQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVN 338 (1306)
Q Consensus 281 l~~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~ 338 (1306)
|...+++.|++|++++.|++|+.++++ ++.||.+.+ ++....+.|+. ||||+|++.
T Consensus 143 L~~~~~~~gv~i~~~~~v~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~Ak~-VIlATGG~~ 200 (554)
T PRK08275 143 LYRQLKRARVLITNRIMATRLLTDADG-RVAGALGFDCRTGEFLVIRAKA-VILCCGAAG 200 (554)
T ss_pred HHHHHHHCCCEEEcceEEEEEEEcCCC-eEEEEEEEecCCCcEEEEECCE-EEECCCCcc
Confidence 334445679999999999999987333 899998753 45556788865 999999875
No 125
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.85 E-value=2.8e-08 Score=123.96 Aligned_cols=51 Identities=24% Similarity=0.275 Sum_probs=41.9
Q ss_pred CCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 286 TRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 286 ~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
+.+|++++.++.|++|+.+++ ++.||.... ++....+.|+ .||||+|++..
T Consensus 144 ~~~~i~i~~~~~v~~Li~~~g--~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVDDG--RVCGLVAIEMAEGRLVTILAD-AVVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEeeCC--EEEEEEEEEcCCCcEEEEecC-EEEEcCCCCcc
Confidence 446899999999999998765 999998754 5666778886 59999999764
No 126
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.85 E-value=4.3e-08 Score=122.85 Aligned_cols=53 Identities=9% Similarity=0.217 Sum_probs=41.9
Q ss_pred cCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 285 KTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 285 ~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
+.+.|++|+.++.|++|+.++++ +++||.+.. ++....+.|+ .||||+|++..
T Consensus 158 ~~~~gi~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 212 (591)
T PRK07057 158 NVAAKTQFFVEWMALDLIRDADG-DVLGVTALEMETGDVYILEAK-TTLFATGGAGR 212 (591)
T ss_pred HHhcCCEEEeCcEEEEEEEcCCC-eEEEEEEEEcCCCeEEEEECC-eEEECCCCccc
Confidence 34678999999999999987533 899998853 4555677775 49999999874
No 127
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.85 E-value=1.6e-08 Score=112.22 Aligned_cols=34 Identities=35% Similarity=0.514 Sum_probs=32.5
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+|||||||+|++|+++|+.|++ .|.+|+||||+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~-~G~~V~vlEk~~ 54 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAK-NGLKVCVLERSL 54 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 7999999999999999999999 499999999986
No 128
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.84 E-value=2.1e-08 Score=117.16 Aligned_cols=207 Identities=19% Similarity=0.262 Sum_probs=115.6
Q ss_pred CCccEEEECCChhHHHHHHHHhCC-CCCEEEEEcCCCCCCCCCcchhhHHhhhcCCCCCccccccCcccccccCCCeeee
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEI-ENWKILLLEAGGDETDISDVPVLAAYLQLSGLDWSYKTEPSSTSCLAMEHNRCNW 156 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~-~G~~VLvLE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 156 (1306)
.+|||||||||..|+++|+.|++. ++++|+||||-......+. .
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS-----------~------------------------ 46 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESS-----------S------------------------ 46 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccc-----------c------------------------
Confidence 479999999999999999999992 2399999999863221000 0
Q ss_pred cCcccccCcccccceEEecCChhhHHH-HHhcCCCCCChhhHHHHHHHhccCCCCCCCCCCCCCCCCceeeecCCCccHH
Q psy1043 157 PRGKVVGGSSVLNYMLYVRGNRNDYNH-WESLGNPGWGAAEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPL 235 (1306)
Q Consensus 157 ~~g~~lGGsS~~n~~~~~r~~~~d~~~-w~~~g~~~w~~~~~~~y~~~~e~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 235 (1306)
.=|.++..+++..+. ++.. ....|+.. +|+-+..+- .++. ..|.+.+...+.....
T Consensus 47 ------~NSgviHag~~y~p~--slka~l~~~g~~~--------~~~~~kq~~------~~f~-~~g~l~vA~~e~e~~~ 103 (429)
T COG0579 47 ------NNSGVIHAGLYYTPG--SLKAKLCVAGNIN--------EFAICKQLG------IPFI-NCGKLSVATGEEEVER 103 (429)
T ss_pred ------CcccceeccccCCCc--chhhHHHHHHHHH--------HHHHHHHhC------Cccc-ccCeEEEEEChHHHHH
Confidence 001111222222111 1110 11112111 122222211 1222 2377888887777788
Q ss_pred HHHHHHHHHHcCCC-CCCCCCC-----------Cccceeeecc-cccCCcccchhhhccccccCCCCeEEEeccEEEEEE
Q psy1043 236 AEAFVRGGEELGYE-NRDINGE-----------YQTGFMVAQG-TVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVL 302 (1306)
Q Consensus 236 ~~~~~~~~~~~G~~-~~~~~~~-----------~~~g~~~~~~-~~~~g~r~s~~~~~l~~~~~~~nl~I~~~~~V~~I~ 302 (1306)
.+.+.+.+.+.|+. ...++.. ...+.-+.+. ++.+.. ....+++. .+...|++|.+|++|+.|.
T Consensus 104 L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~--~~t~~l~e-~a~~~g~~i~ln~eV~~i~ 180 (429)
T COG0579 104 LEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPG--ELTRALAE-EAQANGVELRLNTEVTGIE 180 (429)
T ss_pred HHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHH--HHHHHHHH-HHHHcCCEEEecCeeeEEE
Confidence 88888888888877 1111110 0111111111 111111 12223332 3445599999999999999
Q ss_pred ecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHHhCCCCc
Q psy1043 303 IDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSGIGPK 351 (1306)
Q Consensus 303 ~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~SGiG~~ 351 (1306)
..+++ ++-+.. .+|+.. ++|+. ||.|||. .+-+|+.++|+.+.
T Consensus 181 ~~~dg--~~~~~~-~~g~~~-~~ak~-Vin~AGl-~Ad~la~~~g~~~~ 223 (429)
T COG0579 181 KQSDG--VFVLNT-SNGEET-LEAKF-VINAAGL-YADPLAQMAGIPED 223 (429)
T ss_pred EeCCc--eEEEEe-cCCcEE-EEeeE-EEECCch-hHHHHHHHhCCCcc
Confidence 98763 222332 344444 88865 9999995 78999999998764
No 129
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.84 E-value=4e-08 Score=121.13 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=40.4
Q ss_pred CCeEEEeccEEEEEEecCCCCeEEEEEEEe-CCeEEEEEEcceEEEccCCCCc
Q psy1043 288 PNLHISLHSHVTKVLIDPKNRMAIGVEFVK-NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 288 ~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~-~g~~~~v~A~k~VVLaAGai~S 339 (1306)
.|++|++++.|++|+.+++ ++.||.+.. +++...+.|+. ||||+|++..
T Consensus 142 ~gV~i~~~~~v~~Li~~~g--~v~Gv~~~~~~g~~~~i~Ak~-VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIENG--RCIGVLTKDSEGKLKRYYADY-VVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeecCC--EEEEEEEEECCCcEEEEEcCe-EEEecCCCcc
Confidence 5899999999999988755 899998865 45556788865 9999999874
No 130
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.83 E-value=1.2e-08 Score=122.05 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=32.8
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
.+|||||||+|+.|+++|++|++. |++|+||||+.
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~ 36 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFM 36 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEeccc
Confidence 369999999999999999999994 99999999985
No 131
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.83 E-value=1.8e-08 Score=120.90 Aligned_cols=34 Identities=38% Similarity=0.709 Sum_probs=32.0
Q ss_pred CccEEEECCChHHHHHHHHHHcCC--CCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQK--NWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~--G~~VlVLE~G~ 736 (1306)
.|||||||||++|+++|++|++ . |++|+||||+.
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~-~~~g~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQE-RYPGARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHH-hCCCCeEEEEeCCC
Confidence 4899999999999999999998 5 99999999985
No 132
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.83 E-value=3e-08 Score=124.18 Aligned_cols=52 Identities=15% Similarity=0.092 Sum_probs=41.9
Q ss_pred CCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 286 TRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 286 ~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
+..|++|++++.|++|+.++++ +|+||.+.+ ++....+.|+. ||||+|++..
T Consensus 144 ~~~gV~i~~~t~v~~Li~dd~g-rV~GV~~~~~~~g~~~~i~Aka-VVLATGG~g~ 197 (603)
T TIGR01811 144 AAGLVEKYEGWEMLDIIVVDGN-RARGIIARNLVTGEIETHSADA-VILATGGYGN 197 (603)
T ss_pred ccCCcEEEeCcEEEEEEEcCCC-EEEEEEEEECCCCcEEEEEcCE-EEECCCCCcC
Confidence 3468999999999999987543 899999875 45556788865 9999999864
No 133
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.82 E-value=1.9e-08 Score=126.50 Aligned_cols=72 Identities=22% Similarity=0.165 Sum_probs=47.2
Q ss_pred CCCchHHHHHHHHHHhhCCCcccccCCCCCCCcCCCCCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 664 GPSIGFILLFRYMISQYRPDVEDLEHLIPDVPLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 664 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
-++.+++..++..+.+.+.+.................++|||||||+|+.|+++|+.||+ .|++|+|||+++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~DVvVIGGGi~Ga~~A~~lA~-rGl~V~LvE~~d 104 (627)
T PLN02464 33 KGGGPALDSLRDRIADPNASVPSRSAQESALIGATAAEPLDVLVVGGGATGAGVALDAAT-RGLRVGLVERED 104 (627)
T ss_pred cccccccccchhhhhccCCCCcChHHHHHHhhccccCCccCEEEECCCHHHHHHHHHHHh-CCCEEEEEeccc
Confidence 344456666666666655444222111111100011346999999999999999999999 599999999985
No 134
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.82 E-value=2.2e-08 Score=121.46 Aligned_cols=56 Identities=20% Similarity=0.241 Sum_probs=42.2
Q ss_pred hhhhhcC----CC--cEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHhc
Q psy1043 904 LRPIIAR----PN--LHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYL 971 (1306)
Q Consensus 904 L~~~~~~----~g--~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LLl 971 (1306)
|...+++ .| ++|+++++|+.|..++ +.++.|.+.+| +|+|+. ||+|||++ |..|+.
T Consensus 217 l~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-----~~~~~V~T~~G-----~i~A~~-VVvaAG~~-S~~La~ 278 (497)
T PTZ00383 217 FVKHARRDALVPGKKISINLNTEVLNIERSN-----DSLYKIHTNRG-----EIRARF-VVVSACGY-SLLFAQ 278 (497)
T ss_pred HHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-----CCeEEEEECCC-----EEEeCE-EEECcChh-HHHHHH
Confidence 3345555 56 8899999999998875 45667777777 688987 99999997 555554
No 135
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.82 E-value=1.9e-08 Score=103.07 Aligned_cols=34 Identities=32% Similarity=0.482 Sum_probs=32.1
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+.||||||+|++|++||++||++ |.||+|+||.-
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~l 63 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERKL 63 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhC-CceEEEEEeec
Confidence 68999999999999999999995 99999999974
No 136
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.81 E-value=7.5e-08 Score=126.49 Aligned_cols=35 Identities=40% Similarity=0.620 Sum_probs=32.9
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
.+|||||||||.+|+.+|+++++ .|.+|+||||+.
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~-~G~~V~lleK~~ 46 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAE-HGANVLLLEKAH 46 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHH-CCCeEEEEeccc
Confidence 47999999999999999999999 599999999986
No 137
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.80 E-value=1.1e-07 Score=115.33 Aligned_cols=53 Identities=23% Similarity=0.219 Sum_probs=41.3
Q ss_pred eEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHHhCCCC
Q psy1043 290 LHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSGIGP 350 (1306)
Q Consensus 290 l~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~SGiG~ 350 (1306)
++|+++++|+.|..+++ ....|.. .++ .+.|+. ||+|||+ +|..|+..+|++.
T Consensus 232 v~i~~~t~V~~I~~~~~--~~~~V~T-~~G---~i~A~~-VVvaAG~-~S~~La~~~Gi~~ 284 (497)
T PTZ00383 232 ISINLNTEVLNIERSND--SLYKIHT-NRG---EIRARF-VVVSACG-YSLLFAQKMGYGL 284 (497)
T ss_pred EEEEeCCEEEEEEecCC--CeEEEEE-CCC---EEEeCE-EEECcCh-hHHHHHHHhCCCC
Confidence 89999999999988654 4445543 233 589987 9999997 6899999998853
No 138
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.80 E-value=2e-08 Score=121.30 Aligned_cols=58 Identities=24% Similarity=0.255 Sum_probs=40.8
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHHhCC
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSGI 348 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~SGi 348 (1306)
.+.+.|++++.++.|++|..++++ ++.+|... ++ .+.+++ ||+|||+. ++.++...|+
T Consensus 192 ~a~~~Gv~~~~~~~V~~i~~~~~~-~~~~v~t~-~g---~i~a~~-vVvaagg~-~~~l~~~~g~ 249 (407)
T TIGR01373 192 GADRRGVDIIQNCEVTGFIRRDGG-RVIGVETT-RG---FIGAKK-VGVAVAGH-SSVVAAMAGF 249 (407)
T ss_pred HHHHCCCEEEeCCEEEEEEEcCCC-cEEEEEeC-Cc---eEECCE-EEECCChh-hHHHHHHcCC
Confidence 445678999999999999765333 66677653 23 588877 99999984 5566554443
No 139
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.79 E-value=1.8e-08 Score=119.89 Aligned_cols=33 Identities=27% Similarity=0.522 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 703 yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
|||||||+|++|+++|++|++ .|++|+|||++.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~-~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAAR-RGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 799999999999999999999 499999999985
No 140
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.78 E-value=7.5e-08 Score=115.34 Aligned_cols=33 Identities=45% Similarity=0.599 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
|||||||||.+|+++|+.|++ .|++|+|||++.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~-~g~~V~l~e~~~ 33 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAK-HGKKTLLLEQFD 33 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHH-CCCeEEEEeccC
Confidence 799999999999999999999 699999999975
No 141
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.78 E-value=3.8e-08 Score=120.50 Aligned_cols=36 Identities=42% Similarity=0.584 Sum_probs=33.6
Q ss_pred CCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 700 ~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
..+|||||||||.|||.||..+++ .|.+|+||||..
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~-~g~~V~l~~K~~ 39 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAE-AGLKVALLSKAP 39 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHh-cCCcEEEEEccc
Confidence 357999999999999999999999 599999999986
No 142
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.78 E-value=2.8e-08 Score=103.10 Aligned_cols=34 Identities=38% Similarity=0.559 Sum_probs=29.5
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+|||+|||+|++|+++|++||++ |+||+|+|+..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~ 50 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKL 50 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSS
T ss_pred cCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCC
Confidence 79999999999999999999995 99999999985
No 143
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.77 E-value=2.3e-08 Score=121.43 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=46.9
Q ss_pred HhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHhc
Q psy1043 901 KAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYL 971 (1306)
Q Consensus 901 ~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LLl 971 (1306)
...|...+++.|++|+++++|++|+.++ ..++++||...++. . .++++. ||||+|+++...-++
T Consensus 126 ~~~L~~~a~~~Gv~i~~~~~v~~l~~~~---~~g~v~gv~~~~~~-~--~i~ak~-VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 126 TNALYSSAERLGVEIRYGIAVDRIPPEA---FDGAHDGPLTTVGT-H--RITTQA-LVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHHHHcCCEEEeCCEEEEEEecC---CCCeEEEEEEcCCc-E--EEEcCE-EEEcCCCcccCHHHH
Confidence 3345556778899999999999998863 12689998854332 3 778865 999999998655443
No 144
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.77 E-value=5.1e-09 Score=123.84 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=35.2
Q ss_pred cccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHH
Q psy1043 283 PVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQI 342 (1306)
Q Consensus 283 ~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~L 342 (1306)
..+++.|++|+++++|+.|..+++ .+..|++ .++ ..+.+++ ||||+|+...|++
T Consensus 117 ~~l~~~gv~i~~~~~V~~i~~~~~--~~f~v~~-~~~--~~~~a~~-vILAtGG~S~p~~ 170 (409)
T PF03486_consen 117 EELKRLGVEIHFNTRVKSIEKKED--GVFGVKT-KNG--GEYEADA-VILATGGKSYPKT 170 (409)
T ss_dssp HHHHHHT-EEE-S--EEEEEEETT--EEEEEEE-TTT--EEEEESE-EEE----SSSGGG
T ss_pred HHHHHcCCEEEeCCEeeeeeecCC--ceeEeec-cCc--ccccCCE-EEEecCCCCcccc
Confidence 345677999999999999999877 6777776 233 3688987 9999999887774
No 145
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.76 E-value=2e-08 Score=122.92 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=32.5
Q ss_pred CCccEEEECCChhHHHHHHHHhCC-CCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEI-ENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~-~G~~VLvLE~G~ 113 (1306)
.++||||||+|.+|+++|++|++. +|.+|+|||++.
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 469999999999999999999982 389999999984
No 146
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.76 E-value=1.2e-07 Score=115.60 Aligned_cols=60 Identities=22% Similarity=0.325 Sum_probs=42.4
Q ss_pred CCCCeEEEeccEEEEEEecCCCCeEEEEEEE--eCCeEEEEEEcceEEEccCCCCcHHHHHHhCCC
Q psy1043 286 TRPNLHISLHSHVTKVLIDPKNRMAIGVEFV--KNHQRHVIRARKEVILSGGAVNSPQILMLSGIG 349 (1306)
Q Consensus 286 ~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~--~~g~~~~v~A~k~VVLaAGai~Sp~LLl~SGiG 349 (1306)
+..+++|+++++|+.|..++++ .+ .|.+. ..+...++.|+. ||+|||+ ++..|+..+|+.
T Consensus 195 ~~Ggv~i~~~teV~~I~~~~dg-~~-~v~~~~~~~G~~~~i~A~~-VVvaAGg-~s~~L~~~~Gi~ 256 (494)
T PRK05257 195 KQGNFELQLGHEVRDIKRNDDG-SW-TVTVKDLKTGEKRTVRAKF-VFIGAGG-GALPLLQKSGIP 256 (494)
T ss_pred hCCCeEEEeCCEEEEEEECCCC-CE-EEEEEEcCCCceEEEEcCE-EEECCCc-chHHHHHHcCCC
Confidence 3345999999999999876553 23 23332 234334688876 9999997 678888888874
No 147
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.76 E-value=5.6e-08 Score=118.54 Aligned_cols=36 Identities=28% Similarity=0.545 Sum_probs=32.8
Q ss_pred CCccEEEECCChHHHHHHHHHHcC-CCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQ-KNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~-~G~~VlVLE~G~ 736 (1306)
..|||||||||+.|+++|++|++. +|++|+||||..
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~ 40 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLD 40 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 469999999999999999999983 489999999985
No 148
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.74 E-value=4.8e-08 Score=118.52 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=39.5
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHH
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILML 345 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~ 345 (1306)
.+.+.|++|++++.|++|..+++ ++++|+.. ++ ++.+++ ||+|+|+ ++..|+..
T Consensus 210 ~~~~~G~~i~~~~~V~~i~~~~~--~~~~v~t~-~~---~~~a~~-VV~a~G~-~~~~l~~~ 263 (416)
T PRK00711 210 MAEQLGVKFRFNTPVDGLLVEGG--RITGVQTG-GG---VITADA-YVVALGS-YSTALLKP 263 (416)
T ss_pred HHHHCCCEEEcCCEEEEEEecCC--EEEEEEeC-Cc---EEeCCE-EEECCCc-chHHHHHH
Confidence 44567899999999999987765 66666542 22 578876 9999997 45666543
No 149
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.74 E-value=1.4e-07 Score=113.30 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=41.4
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHHhCCC
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSGIG 349 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~SGiG 349 (1306)
.+++.|++|+.++.|++|..+++ .+ .|.. .++ ++.++. ||+|+|+ +++.++...|+.
T Consensus 158 ~~~~~Gv~i~~~~~V~~i~~~~~--~~-~V~~-~~g---~i~ad~-vV~A~G~-~s~~l~~~~g~~ 214 (393)
T PRK11728 158 LIQARGGEIRLGAEVTALDEHAN--GV-VVRT-TQG---EYEART-LINCAGL-MSDRLAKMAGLE 214 (393)
T ss_pred HHHhCCCEEEcCCEEEEEEecCC--eE-EEEE-CCC---EEEeCE-EEECCCc-chHHHHHHhCCC
Confidence 44567899999999999987654 33 3443 222 588876 9999996 688888777653
No 150
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.73 E-value=1.4e-07 Score=112.91 Aligned_cols=41 Identities=27% Similarity=0.326 Sum_probs=37.1
Q ss_pred CCCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCCCCCC
Q psy1043 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESP 740 (1306)
Q Consensus 699 ~~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~ 740 (1306)
|+++|||||||+|.+||++|..|++ .|+|||+|||.+.+..
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~-~GkkVLhlD~n~~yGG 41 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSV-NGKKVLHMDRNPYYGG 41 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhh-CCCEEEEecCCCCcCc
Confidence 4578999999999999999999999 5999999999987643
No 151
>PLN02661 Putative thiazole synthesis
Probab=98.73 E-value=4.8e-08 Score=110.95 Aligned_cols=36 Identities=39% Similarity=0.538 Sum_probs=32.8
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
.++||||||+|++|+++|+.|++++|++|+|||++.
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 479999999999999999999975689999999874
No 152
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.73 E-value=3.9e-08 Score=105.79 Aligned_cols=67 Identities=22% Similarity=0.264 Sum_probs=48.9
Q ss_pred hHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEE--E-e-----CCeee------eEEEEeCcEEEEcCCCcc
Q psy1043 900 AKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVV--V-K-----KGRKD------PVLVRARREVILSAGAIG 965 (1306)
Q Consensus 900 ~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~--~-~-----~G~~~------~~~v~A~k~VVLAAGai~ 965 (1306)
....++.+.++.-+++.+.++|.+|...+ ++|+||. + . .|+.. -+++.|.. ||+++|+|+
T Consensus 155 Fvr~~re~~~~~~v~f~~RHrV~~l~~t~-----grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~a-viv~SGGIG 228 (552)
T COG3573 155 FVRRLREAQRRGRVTFRFRHRVDGLTTTG-----GRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASA-VIVASGGIG 228 (552)
T ss_pred HHHHHHHHHhCCceEEEeeeeccceEeeC-----CeEeeecccccCCCccccCCCccceeecceEEeeee-EEEecCCcC
Confidence 33345555667779999999999999988 8999998 2 1 12111 25788865 999999998
Q ss_pred hHHHhcC
Q psy1043 966 SPQVYLI 972 (1306)
Q Consensus 966 sp~LLl~ 972 (1306)
-..-|.+
T Consensus 229 GnhelVR 235 (552)
T COG3573 229 GNHELVR 235 (552)
T ss_pred CCHHHHH
Confidence 7666666
No 153
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.72 E-value=4.3e-08 Score=119.47 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=43.7
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEE--eCCeEEEEEEcceEEEccCCCCcHHHHHHhCCC
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFV--KNHQRHVIRARKEVILSGGAVNSPQILMLSGIG 349 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~--~~g~~~~v~A~k~VVLaAGai~Sp~LLl~SGiG 349 (1306)
.+.+.|++|+++++|++|..++++ .+ .|.+. ..+...++.|+. ||+|||+ ++.+|+...|+.
T Consensus 187 ~a~~~Gv~i~~~t~V~~i~~~~~~-~v-~v~~~~~~~g~~~~i~A~~-VV~AAG~-~s~~La~~~Gi~ 250 (483)
T TIGR01320 187 YLVQNGTTIRFGHEVRNLKRQSDG-SW-TVTVKNTRTGGKRTLNTRF-VFVGAGG-GALPLLQKSGIP 250 (483)
T ss_pred HHHhCCCEEEeCCEEEEEEEcCCC-eE-EEEEeeccCCceEEEECCE-EEECCCc-chHHHHHHcCCC
Confidence 344568999999999999876542 22 23322 234345688876 9999997 678888888875
No 154
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.72 E-value=1.8e-07 Score=123.00 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=40.0
Q ss_pred CCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCC
Q psy1043 287 RPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVN 338 (1306)
Q Consensus 287 ~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~ 338 (1306)
+.++++.+++.+++|+.+++ +++||.+.+ ++..+.+.|+ .||||+|+++
T Consensus 155 ~~~i~~~~~~~~~~Li~~~g--~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g 205 (897)
T PRK13800 155 RERIRIENRLMPVRVLTEGG--RAVGAAALNTRTGEFVTVGAK-AVILATGPCG 205 (897)
T ss_pred cCCcEEEeceeeEEEEeeCC--EEEEEEEEecCCCcEEEEECC-EEEECCCccc
Confidence 35799999999999998755 899998754 5666778885 5999999986
No 155
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.71 E-value=5.4e-08 Score=108.48 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=32.7
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
.+|||||||+|++|+++|.+|++ +|++|+|||+..
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~-~G~~V~liEk~~ 58 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK-AGLKVAVFERKL 58 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh-CCCeEEEEecCC
Confidence 36999999999999999999998 899999999875
No 156
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.70 E-value=1.8e-07 Score=116.49 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=40.0
Q ss_pred CCCeEEEeccEEEEEEecCC-CCeEEEEEEEe--CCeEEEEEEcceEEEccCCCC
Q psy1043 287 RPNLHISLHSHVTKVLIDPK-NRMAIGVEFVK--NHQRHVIRARKEVILSGGAVN 338 (1306)
Q Consensus 287 ~~nl~I~~~~~V~~I~~d~~-~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~ 338 (1306)
..+++|+.++.|++|+.+++ +++++||.+.. ++..+.+.|+. ||||+|++.
T Consensus 138 ~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~Aka-VVLATGG~~ 191 (614)
T TIGR02061 138 NALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKT-VIVAAGGAV 191 (614)
T ss_pred hCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCE-EEECCCccc
Confidence 34579999999999998752 13899998753 56667788865 999999975
No 157
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.70 E-value=6.4e-08 Score=107.50 Aligned_cols=35 Identities=37% Similarity=0.530 Sum_probs=32.9
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
.+|||||||+|++|+++|++|++ .|++|+||||+.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-~G~~V~vlEk~~ 54 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-NGLKVCVLERSL 54 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 37999999999999999999999 799999999985
No 158
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.69 E-value=2.2e-08 Score=122.71 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=44.8
Q ss_pred hHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHh
Q psy1043 900 AKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVY 970 (1306)
Q Consensus 900 ~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LL 970 (1306)
....|...+++.|++|+++++|++|++++ ++.++|...+| . .+.++. ||.++.. ..+..|
T Consensus 226 l~~aL~~~~~~~Gg~I~~~~~V~~I~v~~-----g~g~~~~~~~g--~--~~~ad~-vv~~~~~-~~~~~l 285 (487)
T COG1233 226 LVDALAELAREHGGEIRTGAEVSQILVEG-----GKGVGVRTSDG--E--NIEADA-VVSNADP-ALLARL 285 (487)
T ss_pred HHHHHHHHHHHcCCEEECCCceEEEEEeC-----CcceEEecccc--c--eeccce-eEecCch-hhhhhh
Confidence 33446668889999999999999999998 67777777777 3 778876 7777775 333333
No 159
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.68 E-value=6.6e-08 Score=119.31 Aligned_cols=37 Identities=41% Similarity=0.673 Sum_probs=34.0
Q ss_pred CCCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 699 ~~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
|.++|||||||+|+.|+.+|+.||+ .|++|+||||++
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~-rGl~V~LvEk~d 39 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAG-RGLSVLLCEQDD 39 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 3457999999999999999999999 599999999985
No 160
>KOG2820|consensus
Probab=98.68 E-value=1e-07 Score=103.81 Aligned_cols=60 Identities=13% Similarity=0.157 Sum_probs=47.8
Q ss_pred hhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHhc
Q psy1043 903 YLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYL 971 (1306)
Q Consensus 903 ~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LLl 971 (1306)
.+...+++.|+.++.+..|+.+.+.+ ..+..++|.+.+|. .+.|++ +|+++|+| +.+||-
T Consensus 158 ~~~~~~~~~G~i~~dg~~v~~~~~~~---e~~~~v~V~Tt~gs----~Y~akk-iI~t~GaW-i~klL~ 217 (399)
T KOG2820|consen 158 ALQDKARELGVIFRDGEKVKFIKFVD---EEGNHVSVQTTDGS----IYHAKK-IIFTVGAW-INKLLP 217 (399)
T ss_pred HHHHHHHHcCeEEecCcceeeEeecc---CCCceeEEEeccCC----eeecce-EEEEecHH-HHhhcC
Confidence 45567788999999999999998875 33677888888886 568988 99999997 455553
No 161
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.68 E-value=2.1e-07 Score=113.86 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
+||||||||.+|+++|.+|++ .|.+|+|||++.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae-~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAK-KGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 799999999999999999999 799999999974
No 162
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.67 E-value=1.6e-07 Score=116.16 Aligned_cols=37 Identities=41% Similarity=0.601 Sum_probs=34.1
Q ss_pred CCCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 699 ~~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
|..+|||||||+|+.|+++|+.||+ .|++|+||||++
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~-rG~~V~LlEk~d 39 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAG-RGLKVLLCEKDD 39 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHh-CCCcEEEEECCC
Confidence 3457999999999999999999999 499999999996
No 163
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.66 E-value=2e-07 Score=117.25 Aligned_cols=62 Identities=10% Similarity=0.143 Sum_probs=47.2
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCcHHHHHHhC
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNSPQILMLSG 347 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~Sp~LLl~SG 347 (1306)
.+.+.|++|+.++.|++|..++.+++++||.+.+ +++.+.+.++. ||+|||+ ++..|+...|
T Consensus 241 ~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~-VVnAaGa-ws~~l~~~~g 304 (627)
T PLN02464 241 TAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKV-VVNAAGP-FCDEVRKMAD 304 (627)
T ss_pred HHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCE-EEECCCH-hHHHHHHhcc
Confidence 4456789999999999998874112788988854 45556789976 9999996 6788877664
No 164
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.65 E-value=1.2e-07 Score=115.40 Aligned_cols=50 Identities=28% Similarity=0.430 Sum_probs=39.9
Q ss_pred cCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHH
Q psy1043 909 ARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQV 969 (1306)
Q Consensus 909 ~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~L 969 (1306)
+..|++|+ ++.|++|+.++ +++.||.+.+|. .+.|+. ||+|+|+|-.-.+
T Consensus 112 ~~~nV~I~-q~~V~~Li~e~-----grV~GV~t~dG~----~I~Ak~-VIlATGTFL~g~i 161 (618)
T PRK05192 112 NQPNLDLF-QGEVEDLIVEN-----GRVVGVVTQDGL----EFRAKA-VVLTTGTFLRGKI 161 (618)
T ss_pred cCCCcEEE-EeEEEEEEecC-----CEEEEEEECCCC----EEECCE-EEEeeCcchhcCe
Confidence 45689985 67899998887 789999988885 788986 9999998754333
No 165
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.65 E-value=1.7e-07 Score=112.00 Aligned_cols=35 Identities=31% Similarity=0.460 Sum_probs=32.7
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
.+|||||||+|+.|+++|+.|++ .|++|+|||++.
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~-~g~~V~lie~~~ 36 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLAR-RGLRVLGLDRFM 36 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHH-CCCeEEEEeccc
Confidence 36999999999999999999999 699999999985
No 166
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.64 E-value=2.6e-07 Score=109.94 Aligned_cols=33 Identities=30% Similarity=0.528 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
|||||||+|.+|+++|++|++ .|++|+|||++.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~-~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAAR-RGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 799999999999999999999 699999999984
No 167
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.64 E-value=1.6e-07 Score=114.44 Aligned_cols=34 Identities=32% Similarity=0.529 Sum_probs=31.4
Q ss_pred ccEEEECCChHHHHHHHHHHcC-CCCEEEEECCCC
Q psy1043 703 YDFVVVGGGSAGAVVARRLSEQ-KNWKVLLLEAGG 736 (1306)
Q Consensus 703 yDvIVIGsG~aG~~aA~~Lae~-~G~~VlVLE~G~ 736 (1306)
|||||||+|++|+++|++|++. +|++|+||||..
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~ 35 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLD 35 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 6999999999999999999983 499999999975
No 168
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.63 E-value=5.3e-07 Score=109.14 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=45.5
Q ss_pred hccccccCCCCeEEEeccEEEEEEecCCCCeEEEEEE--EeCCeEEEEEEcceEEEccCCCCcHHHHHHhCCC
Q psy1043 279 AFLQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEF--VKNHQRHVIRARKEVILSGGAVNSPQILMLSGIG 349 (1306)
Q Consensus 279 ~~l~~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~--~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~SGiG 349 (1306)
+++..+.+..|++|++++.|+.|..++++ ..+ |.+ ...++..++.|+. ||+|||+ ++.+|+..+|+.
T Consensus 189 aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~-~w~-v~v~~t~~g~~~~i~Ad~-VV~AAGa-wS~~La~~~Gi~ 257 (497)
T PRK13339 189 KLAKHLESHPNAQVKYNHEVVDLERLSDG-GWE-VTVKDRNTGEKREQVADY-VFIGAGG-GAIPLLQKSGIP 257 (497)
T ss_pred HHHHHHHhCCCcEEEeCCEEEEEEECCCC-CEE-EEEEecCCCceEEEEcCE-EEECCCc-chHHHHHHcCCC
Confidence 34433334568999999999999876332 222 232 2233333688876 9999997 789999999874
No 169
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.61 E-value=2.9e-07 Score=95.68 Aligned_cols=35 Identities=37% Similarity=0.533 Sum_probs=29.8
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
.+|||+|||+|++|+++|+.||+ .|+||+|+|+..
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~-~g~kV~v~E~~~ 50 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAK-AGLKVAVIERKL 50 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHH-HTS-EEEEESSS
T ss_pred ccCCEEEECCChhHHHHHHHHHH-CCCeEEEEecCC
Confidence 47999999999999999999999 699999999884
No 170
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.61 E-value=1e-07 Score=121.82 Aligned_cols=34 Identities=41% Similarity=0.721 Sum_probs=32.1
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
++||||||||++|+++|++|++ .|++|+||||+.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~-~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALAR-RGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 5899999999999999999999 499999999985
No 171
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.60 E-value=8.2e-08 Score=116.10 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=42.2
Q ss_pred chhHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCC
Q psy1043 898 STAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGA 963 (1306)
Q Consensus 898 ~~~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGa 963 (1306)
.....+|...+++.|++|+++++|++|..++ +++++|.. +|. ++.|+. ||+|+|+
T Consensus 108 ~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-----g~v~~v~~-~g~----~i~A~~-VI~A~G~ 162 (428)
T PRK10157 108 SKFDAWLMEQAEEAGAQLITGIRVDNLVQRD-----GKVVGVEA-DGD----VIEAKT-VILADGV 162 (428)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEeC-----CEEEEEEc-CCc----EEECCE-EEEEeCC
Confidence 3455667677778899999999999998776 56766653 443 678976 9999987
No 172
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.58 E-value=1e-06 Score=106.65 Aligned_cols=36 Identities=25% Similarity=0.435 Sum_probs=32.2
Q ss_pred CCccEEEECCChHHHHHHHHHHc-CCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSE-QKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae-~~G~~VlVLE~G~ 736 (1306)
+.+||||||+|++|+++|+.|++ .+|++|+||||-+
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~ 41 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLD 41 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCC
Confidence 57899999999999999999998 2489999999943
No 173
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.58 E-value=4.9e-07 Score=104.31 Aligned_cols=57 Identities=23% Similarity=0.422 Sum_probs=45.1
Q ss_pred ccccccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCC-eEEEEEEcceEEEccCCCC
Q psy1043 280 FLQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNH-QRHVIRARKEVILSGGAVN 338 (1306)
Q Consensus 280 ~l~~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g-~~~~v~A~k~VVLaAGai~ 338 (1306)
++..+.+++|++|+.++.+.+|+.+++. .+.||.+...+ +...+.|+. ||||+|+++
T Consensus 139 L~~~v~~~p~I~v~e~~~a~~li~~~~~-~~~Gv~~~~~~~~~~~~~a~~-vVLATGG~g 196 (518)
T COG0029 139 LLKKVRNRPNITVLEGAEALDLIIEDGI-GVAGVLVLNRNGELGTFRAKA-VVLATGGLG 196 (518)
T ss_pred HHHHHhcCCCcEEEecchhhhhhhcCCc-eEeEEEEecCCCeEEEEecCe-EEEecCCCc
Confidence 3444566799999999999999998762 45599987654 467888876 999999764
No 174
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.57 E-value=3.9e-07 Score=110.74 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=44.3
Q ss_pred cccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHH
Q psy1043 283 PVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILML 345 (1306)
Q Consensus 283 ~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~ 345 (1306)
..+++.|++|++++.|++|+.++++++++||....++ ..+.++. ||||+|++....-++.
T Consensus 131 ~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~--~~i~ak~-VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 131 SSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGT--HRITTQA-LVLAAGGLGANRDWLR 190 (432)
T ss_pred HHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCc--EEEEcCE-EEEcCCCcccCHHHHH
Confidence 3456778999999999999987312388998764332 4678855 9999999987554443
No 175
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.57 E-value=2.5e-07 Score=114.23 Aligned_cols=37 Identities=30% Similarity=0.551 Sum_probs=34.3
Q ss_pred CCCCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 76 LYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 76 ~~~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
|.++|||||||||+.|+.+|+.||. .|++|+|||+++
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~-rGl~V~LvEk~d 39 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAG-RGLSVLLCEQDD 39 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 4467999999999999999999999 799999999985
No 176
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.56 E-value=3.1e-07 Score=109.49 Aligned_cols=51 Identities=24% Similarity=0.164 Sum_probs=42.9
Q ss_pred hhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeC---CeeeeEEEEeCcEEEEcCCCcc
Q psy1043 906 PIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKK---GRKDPVLVRARREVILSAGAIG 965 (1306)
Q Consensus 906 ~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~---G~~~~~~v~A~k~VVLAAGai~ 965 (1306)
..+...|.+|++.++|+.+..++ + ++||++.| |+.+ .|+|+. ||.|||.|.
T Consensus 172 ~~A~~~Ga~il~~~~v~~~~re~-----~-v~gV~~~D~~tg~~~--~ira~~-VVNAaGpW~ 225 (532)
T COG0578 172 RDAAEHGAEILTYTRVESLRREG-----G-VWGVEVEDRETGETY--EIRARA-VVNAAGPWV 225 (532)
T ss_pred HHHHhcccchhhcceeeeeeecC-----C-EEEEEEEecCCCcEE--EEEcCE-EEECCCccH
Confidence 35678899999999999999997 5 99999654 5555 899987 999999875
No 177
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.56 E-value=4.2e-07 Score=111.49 Aligned_cols=51 Identities=27% Similarity=0.273 Sum_probs=40.6
Q ss_pred CCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCC
Q psy1043 286 TRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVN 338 (1306)
Q Consensus 286 ~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~ 338 (1306)
+..+++|+.+..|++|+.++++ .+.||.... ++..+.+++ |.||+|+|+.+
T Consensus 150 ~~~~~~~~~~~~~~~l~~~~~~-~v~Gvv~~~~~~g~~~~~~a-kavilaTGG~g 202 (562)
T COG1053 150 KFSGIEIFDEYFVLDLLVDDGG-GVAGVVARDLRTGELYVFRA-KAVILATGGAG 202 (562)
T ss_pred HhhcchhhhhhhhhhheecCCC-cEEEEEEEEecCCcEEEEec-CcEEEccCCce
Confidence 3467899999999999988763 488887753 566777888 45999999987
No 178
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.56 E-value=1.5e-06 Score=103.75 Aligned_cols=74 Identities=22% Similarity=0.261 Sum_probs=56.2
Q ss_pred cCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCcHHHHHHhCCCCccc---ccccCC
Q psy1043 285 KTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDH---LTDMGI 359 (1306)
Q Consensus 285 ~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~Sp~LLl~SGiG~~~~---L~~~gI 359 (1306)
+...|.+|++.++|++++.+++ +.||++.+ +|+++.++|+. ||-|||. ++-+++...+..++.+ -...|+
T Consensus 174 A~~~Ga~il~~~~v~~~~re~~---v~gV~~~D~~tg~~~~ira~~-VVNAaGp-W~d~i~~~~~~~~~~~~~vr~skGs 248 (532)
T COG0578 174 AAEHGAEILTYTRVESLRREGG---VWGVEVEDRETGETYEIRARA-VVNAAGP-WVDEILEMAGLEQSPHIGVRPSKGS 248 (532)
T ss_pred HHhcccchhhcceeeeeeecCC---EEEEEEEecCCCcEEEEEcCE-EEECCCc-cHHHHHHhhcccCCCCccceeccce
Confidence 4567899999999999998764 89999975 57889999976 8888885 7889988887655422 223455
Q ss_pred Ccee
Q psy1043 360 KTIQ 363 (1306)
Q Consensus 360 ~~~~ 363 (1306)
.+|.
T Consensus 249 HlVv 252 (532)
T COG0578 249 HLVV 252 (532)
T ss_pred EEEe
Confidence 5553
No 179
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.56 E-value=2.7e-07 Score=94.90 Aligned_cols=33 Identities=36% Similarity=0.572 Sum_probs=31.4
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
+-||||||+|++|+++|++||+ .|.||+|+|+-
T Consensus 30 esDViIVGaGPsGLtAAyyLAk-~g~kV~i~E~~ 62 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAK-AGLKVAIFERK 62 (262)
T ss_pred hccEEEECcCcchHHHHHHHHh-CCceEEEEEee
Confidence 6799999999999999999999 69999999977
No 180
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.55 E-value=1.6e-07 Score=108.60 Aligned_cols=53 Identities=25% Similarity=0.379 Sum_probs=42.2
Q ss_pred hcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHhc
Q psy1043 908 IARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYL 971 (1306)
Q Consensus 908 ~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LLl 971 (1306)
...+|++|+ +.+|+.|..++ ++|.||.+.+|. .+.++. ||+|+|.|....+..
T Consensus 106 ~~~~nl~i~-~~~V~~l~~e~-----~~v~GV~~~~g~----~~~a~~-vVlaTGtfl~G~~~i 158 (392)
T PF01134_consen 106 ESHPNLTII-QGEVTDLIVEN-----GKVKGVVTKDGE----EIEADA-VVLATGTFLNGCIHI 158 (392)
T ss_dssp HTSTTEEEE-ES-EEEEEECT-----TEEEEEEETTSE----EEEECE-EEE-TTTGBTSEEEE
T ss_pred hcCCCeEEE-EcccceEEecC-----CeEEEEEeCCCC----EEecCE-EEEecccccCceeee
Confidence 346899997 67999999998 899999999997 788976 999999976555544
No 181
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.54 E-value=6.4e-07 Score=96.64 Aligned_cols=36 Identities=42% Similarity=0.654 Sum_probs=33.3
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~ 114 (1306)
.++||||||+|.+|+++|.+||+ +|.+|++||+-++
T Consensus 4 ~~~dvivvgaglaglvaa~elA~-aG~~V~ildQEge 39 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELAD-AGKRVLILDQEGE 39 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHh-cCceEEEEccccc
Confidence 47999999999999999999999 8999999998753
No 182
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.54 E-value=8.1e-08 Score=116.06 Aligned_cols=52 Identities=31% Similarity=0.426 Sum_probs=0.0
Q ss_pred hhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeC--CeeeeEEEEeCcEEEEcCC
Q psy1043 902 AYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKK--GRKDPVLVRARREVILSAG 962 (1306)
Q Consensus 902 ~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~--G~~~~~~v~A~k~VVLAAG 962 (1306)
..|...+.+.|++|++++.|+.++.++ +++++|.+.+ | .. +|+|+. ||-|+|
T Consensus 94 ~~l~~~l~e~gv~v~~~t~v~~v~~~~-----~~i~~V~~~~~~g-~~--~i~A~~-~IDaTG 147 (428)
T PF12831_consen 94 AVLDEMLAEAGVEVLLGTRVVDVIRDG-----GRITGVIVETKSG-RK--EIRAKV-FIDATG 147 (428)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----ccccccccccccc-cc--cccccc-cccccc
Confidence 344455577899999999999999987 7899999644 3 33 899976 999999
No 183
>PRK10015 oxidoreductase; Provisional
Probab=98.53 E-value=2.1e-07 Score=112.41 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=41.5
Q ss_pred hhHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCC
Q psy1043 899 TAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGA 963 (1306)
Q Consensus 899 ~~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGa 963 (1306)
....+|...+++.|++|+.+++|+.|..++ +++++|... +. +++|+. ||+|.|.
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-----~~v~~v~~~-~~----~i~A~~-VI~AdG~ 162 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREG-----NKVTGVQAG-DD----ILEANV-VILADGV 162 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeC-----CEEEEEEeC-Ce----EEECCE-EEEccCc
Confidence 345566667777899999999999998775 577777643 22 688976 9999997
No 184
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.53 E-value=3.9e-07 Score=109.31 Aligned_cols=36 Identities=53% Similarity=0.852 Sum_probs=33.6
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE 737 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 737 (1306)
.+|||||||+|++|++||++|++. |++|+||||+..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~ 37 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSE 37 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCC
Confidence 479999999999999999999995 999999999974
No 185
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.49 E-value=3.4e-07 Score=113.18 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=34.2
Q ss_pred CCCCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 76 LYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 76 ~~~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
+..+|||||||||+.|+.+|+.||. .|++|+|||+++
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~-rG~~V~LlEk~d 39 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAG-RGLKVLLCEKDD 39 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHh-CCCcEEEEECCC
Confidence 3467999999999999999999999 799999999995
No 186
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.49 E-value=1e-07 Score=115.11 Aligned_cols=63 Identities=24% Similarity=0.315 Sum_probs=0.0
Q ss_pred ccccccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHHhCC
Q psy1043 280 FLQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSGI 348 (1306)
Q Consensus 280 ~l~~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~SGi 348 (1306)
.+...+...|++|++++.|+.++.+++ ++.||.+...+...+|+|+- ||-|+| ...|+-++|+
T Consensus 95 ~l~~~l~e~gv~v~~~t~v~~v~~~~~--~i~~V~~~~~~g~~~i~A~~-~IDaTG---~g~l~~~aG~ 157 (428)
T PF12831_consen 95 VLDEMLAEAGVEVLLGTRVVDVIRDGG--RITGVIVETKSGRKEIRAKV-FIDATG---DGDLAALAGA 157 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc--cccccccccccccccccccc-cccccc---cccccccccc
Confidence 344455678999999999999999876 89999997644578899975 999999 3577778875
No 187
>KOG2844|consensus
Probab=98.46 E-value=5.4e-07 Score=105.87 Aligned_cols=194 Identities=18% Similarity=0.150 Sum_probs=107.8
Q ss_pred CCCCccEEEECCChHHHHHHHHHHcCCCCE-EEEECCCCCCCCCCCCCCCCccccCCCCCCCCccccCccccccCCCCee
Q psy1043 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWK-VLLLEAGGEESPLSDIPCTYPALQTSPLDWQYKTEPNDRACLGLNGRRS 777 (1306)
Q Consensus 699 ~~~~yDvIVIGsG~aG~~aA~~Lae~~G~~-VlVLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1306)
.....||||||+|.+|+.+|++||+ .|.+ ++++|+-.-
T Consensus 36 ~~~~A~vvViggG~~g~~~~yhlak-~g~k~avlle~~~l---------------------------------------- 74 (856)
T KOG2844|consen 36 LPSTADVVVIGGGSLGCSTAYHLAK-RGMKGAVLLERSRL---------------------------------------- 74 (856)
T ss_pred CCCcccEEEEcCCchhHHHHHHHHH-ccccceEEEeeeee----------------------------------------
Confidence 4457999999999999999999999 5999 555555431
Q ss_pred ecCCcceecchhHhccceee--cCChhhHHHHHHcCCCCCCcccchHHHHHhhhccCCCCCCCCCCCCCCCcccccCCCC
Q psy1043 778 NWPRGKVIGGSSVLNAMLYV--RGNRRDYDAWEAAGNEGWSYRDTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFRYY 855 (1306)
Q Consensus 778 ~~~~g~~lGG~S~~~~~~~~--r~~~~d~~~w~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~g~~~~~~~~~~ 855 (1306)
--|++-+.++.+. |+.+.+.+.... +-...|.+.|... ......-..|.+.+.....+
T Consensus 75 -------tsgttwhtagl~~~lr~~dv~~qlia~---------~~~~l~~~leeEt----gl~tGwiq~G~~~lAs~~~R 134 (856)
T KOG2844|consen 75 -------TSGTTWHTAGLLWQLFPSDVELQLIAH---------TSRVLYRELEEET----GLHTGWIQNGGIFLASNRQR 134 (856)
T ss_pred -------ccccccccccceeeccCCchhHHHHHH---------HHHHHHHHHHHhc----CCCcceecCCceEEecCHHH
Confidence 0123333333333 333333333321 0111222222210 00111223345555555544
Q ss_pred ChHHHHHHHHHHHcCCCCCCCCCCC---------ccceeeccCCcCCCc--ccchhHhhhhhhhcCCCcEEEecceEEEE
Q psy1043 856 SPVTEAFVESAGELGYEVGDINGER---------QTGFTRAHGTLKNGL--RCSTAKAYLRPIIARPNLHVSLHSHAYRV 924 (1306)
Q Consensus 856 ~~~~~~~~~~~~~~G~~~~~~~~~~---------~~g~~~~~~~~~~g~--~~~~~~~~L~~~~~~~g~~i~~~~~V~~I 924 (1306)
....+.+.......|.+...+.-.. ..+..........|. ....+.+ |..++++.|+.|+.+|.|++|
T Consensus 135 ~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~a-la~~A~~~GA~viE~cpV~~i 213 (856)
T KOG2844|consen 135 LDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQA-LARAASALGALVIENCPVTGL 213 (856)
T ss_pred HHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHH-HHHHHHhcCcEEEecCCcceE
Confidence 4455555555555555442111110 011111111111221 1223333 455888999999999999999
Q ss_pred EecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcc
Q psy1043 925 HFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIG 965 (1306)
Q Consensus 925 ~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~ 965 (1306)
.... +...||++..| .|++.+ ||-|||.|.
T Consensus 214 ~~~~-----~~~~gVeT~~G-----~iet~~-~VNaaGvWA 243 (856)
T KOG2844|consen 214 HVET-----DKFGGVETPHG-----SIETEC-VVNAAGVWA 243 (856)
T ss_pred Eeec-----CCccceeccCc-----ceecce-EEechhHHH
Confidence 9986 45569999999 788988 999999886
No 188
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.45 E-value=1.1e-06 Score=105.99 Aligned_cols=62 Identities=15% Similarity=0.323 Sum_probs=48.1
Q ss_pred hhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEE-eCCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 904 LRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVV-KKGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 904 L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~-~~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
|...++++|++|+++++|++|+++.+ +..++|+||++ .+|....+.+.+++.||+++|++..
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d-~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDIT-GGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCC-CCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 44467789999999999999998631 13478999995 4566555577888889999999854
No 189
>KOG2404|consensus
Probab=98.45 E-value=9.3e-07 Score=95.18 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=41.6
Q ss_pred CcEEEecceEEEEEecCCCCCCceEEEEEEe--CCeeeeEEEEeCcEEEEcCCCcchH-HHhcC
Q psy1043 912 NLHVSLHSHAYRVHFEPGPDGQMRATGVVVK--KGRKDPVLVRARREVILSAGAIGSP-QVYLI 972 (1306)
Q Consensus 912 g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~--~G~~~~~~v~A~k~VVLAAGai~sp-~LLl~ 972 (1306)
-++|.++++|++|+.++ ++|.||++. +|+.. .+.+.. ||+|+|+|+-. +-||.
T Consensus 159 ~~ki~~nskvv~il~n~-----gkVsgVeymd~sgek~--~~~~~~-VVlatGGf~ysd~~lLK 214 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRNN-----GKVSGVEYMDASGEKS--KIIGDA-VVLATGGFGYSDKELLK 214 (477)
T ss_pred HHhhhhcceeeeeecCC-----CeEEEEEEEcCCCCcc--ceecCc-eEEecCCcCcChHHHHH
Confidence 38999999999999665 899999954 45554 677876 99999999863 44443
No 190
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.42 E-value=1.3e-06 Score=106.42 Aligned_cols=35 Identities=43% Similarity=0.489 Sum_probs=32.6
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
.+|||||||||.||+.+|..+|+ .|.+|+|||+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR-~G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAAR-MGAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHH-cCCcEEEEeccc
Confidence 46999999999999999999999 799999999874
No 191
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.41 E-value=8.5e-07 Score=107.31 Aligned_cols=36 Identities=42% Similarity=0.636 Sum_probs=33.5
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~ 114 (1306)
+.|||||||+|++|+++|+.|++ .|++|+||||+..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~-~G~~V~llEr~~~ 39 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAR-EGAQVLVIERGNS 39 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHh-CCCeEEEEEcCCC
Confidence 46999999999999999999999 7999999999963
No 192
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.40 E-value=3.1e-07 Score=99.42 Aligned_cols=63 Identities=27% Similarity=0.418 Sum_probs=42.8
Q ss_pred hHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHhcCc
Q psy1043 900 AKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYLIP 973 (1306)
Q Consensus 900 ~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LLl~p 973 (1306)
...||...+++.+++|+++++|+++..++ ++ .-|.+.+++ +++|+. ||+|+|.+..|+.+-.|
T Consensus 84 v~~yl~~~~~~~~l~i~~~~~V~~v~~~~-----~~-w~v~~~~~~----~~~a~~-VVlAtG~~~~p~~p~~~ 146 (203)
T PF13738_consen 84 VLDYLQEYAERFGLEIRFNTRVESVRRDG-----DG-WTVTTRDGR----TIRADR-VVLATGHYSHPRIPDIP 146 (203)
T ss_dssp HHHHHHHHHHHTTGGEETS--EEEEEEET-----TT-EEEEETTS-----EEEEEE-EEE---SSCSB---S-T
T ss_pred HHHHHHHHHhhcCcccccCCEEEEEEEec-----cE-EEEEEEecc----eeeeee-EEEeeeccCCCCccccc
Confidence 44578888888899999999999999986 34 567788884 777987 99999998888876433
No 193
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.35 E-value=3.2e-06 Score=101.36 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=37.0
Q ss_pred CCCCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCCCCC
Q psy1043 76 LYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETD 117 (1306)
Q Consensus 76 ~~~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~~~ 117 (1306)
|.++|||||||+|.+||++|..||. .|+|||+||+.+....
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~-~GkkVLhlD~n~~yGG 41 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSV-NGKKVLHMDRNPYYGG 41 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhh-CCCEEEEecCCCCcCc
Confidence 3468999999999999999999999 7999999999987653
No 194
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.34 E-value=2.9e-06 Score=89.98 Aligned_cols=32 Identities=34% Similarity=0.519 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+++|||+|++|+++|+.|++ +|++|+|+|||.
T Consensus 3 siaIVGaGiAGl~aA~~L~~-aG~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALRE-AGREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHh-cCcEEEEEEcCC
Confidence 68999999999999999999 599999999996
No 195
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.34 E-value=1.6e-06 Score=104.01 Aligned_cols=37 Identities=43% Similarity=0.791 Sum_probs=34.2
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDE 115 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~ 115 (1306)
.+|||||||+|+||+++|++|++ .|.+|+|||++...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~-~G~~VlvlEk~~~~ 38 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAK-AGLDVLVLEKGSEP 38 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence 47999999999999999999999 79999999999753
No 196
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.33 E-value=1e-06 Score=112.76 Aligned_cols=34 Identities=35% Similarity=0.619 Sum_probs=32.1
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
.+||||||||.+|+++|+.|++ .|++|+|||++.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~-~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALAR-RGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 5899999999999999999999 799999999984
No 197
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.33 E-value=2.7e-06 Score=101.99 Aligned_cols=58 Identities=21% Similarity=0.253 Sum_probs=41.4
Q ss_pred hhHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHH
Q psy1043 899 TAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQ 968 (1306)
Q Consensus 899 ~~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~ 968 (1306)
.....|...+++.|++|++++.|++|..++ + ...|++ ++. .+.++. ||+|+|+...|.
T Consensus 106 ~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-----~-~~~v~~-~~~----~i~ad~-VIlAtG~~s~p~ 163 (400)
T TIGR00275 106 DVLDALLNELKELGVEILTNSKVKSIKKDD-----N-GFGVET-SGG----EYEADK-VILATGGLSYPQ 163 (400)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEecC-----C-eEEEEE-CCc----EEEcCE-EEECCCCcccCC
Confidence 344445556777899999999999997654 2 344555 343 678877 999999976553
No 198
>PRK10015 oxidoreductase; Provisional
Probab=98.27 E-value=1.8e-06 Score=104.41 Aligned_cols=36 Identities=39% Similarity=0.656 Sum_probs=33.5
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~ 114 (1306)
++|||||||+|++|+++|+.||+ .|++|+|||++..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~-~G~~VlliEr~~~ 39 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMAR-AGLDVLVIERGDS 39 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 46999999999999999999999 7999999999863
No 199
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.26 E-value=6.3e-06 Score=95.21 Aligned_cols=68 Identities=21% Similarity=0.367 Sum_probs=51.0
Q ss_pred ccccccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHHhCCC
Q psy1043 280 FLQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSGIG 349 (1306)
Q Consensus 280 ~l~~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~SGiG 349 (1306)
++..+.+++|++|.++++|+.|...+++.-.+-|.-...+....++|+- |+|.||+ .+=.||+.|||.
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~F-VfvGAGG-~aL~LLqksgi~ 254 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKF-VFVGAGG-GALPLLQKSGIP 254 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCE-EEECCch-HhHHHHHHcCCh
Confidence 3444456679999999999999998775333333333456778899965 9999998 688899999984
No 200
>PLN02697 lycopene epsilon cyclase
Probab=98.26 E-value=9.3e-05 Score=90.70 Aligned_cols=59 Identities=14% Similarity=0.026 Sum_probs=43.3
Q ss_pred ccccccccCCCCCCCCccCCCCcEeccCCcEEecCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHhCCCc
Q psy1043 1130 HPVGTCKMGPDSDPGAVVDPRLRVRGVAGLRVIDASIMPTIVSGNTNAPTIMIAEKACDLIKEDWGVME 1198 (1306)
Q Consensus 1130 H~~GtcrMG~~~~~~sVVD~~~rV~g~~nL~V~D~Sv~P~~~~~Np~lTi~ala~raAd~I~~~~~~~~ 1198 (1306)
-..|..+||.+... +.-..|.|-|++=|-...++-....++.-|..+|+.|.+.+....
T Consensus 356 ~E~g~iPm~g~~~~----------~~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~ 414 (529)
T PLN02697 356 EEWSYIPVGGSLPN----------TEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVS 414 (529)
T ss_pred EEeeeecCCCCCcc----------cCCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCc
Confidence 34577788632211 133567888888888888888899999999999999999887543
No 201
>KOG2415|consensus
Probab=98.25 E-value=1.5e-06 Score=96.74 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=53.6
Q ss_pred ccchhHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeC------Cee-----eeEEEEeCcEEEEcCCCc
Q psy1043 896 RCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKK------GRK-----DPVLVRARREVILSAGAI 964 (1306)
Q Consensus 896 ~~~~~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~------G~~-----~~~~v~A~k~VVLAAGai 964 (1306)
+......||...++..|++|..+..+.+++++++ +.|.||.+.| |.. +-+.+.|+. -|+|-|.-
T Consensus 181 ~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~ed----gsVkGiaT~D~GI~k~G~pKd~FerGme~hak~-TifAEGc~ 255 (621)
T KOG2415|consen 181 SLGQLVRWLGEKAEELGVEIYPGFAASEVLYDED----GSVKGIATNDVGISKDGAPKDTFERGMEFHAKV-TIFAEGCH 255 (621)
T ss_pred EHHHHHHHHHHHHHhhCceeccccchhheeEcCC----CcEeeEeeccccccCCCCccccccccceeccee-EEEecccc
Confidence 4456778888889999999999999999999874 7899998654 211 113688865 88988866
Q ss_pred c--hHHHhcC
Q psy1043 965 G--SPQVYLI 972 (1306)
Q Consensus 965 ~--sp~LLl~ 972 (1306)
+ |.+++-.
T Consensus 256 G~Lskqi~kk 265 (621)
T KOG2415|consen 256 GSLSKQIIKK 265 (621)
T ss_pred chhHHHHHHH
Confidence 5 5566654
No 202
>KOG2820|consensus
Probab=98.24 E-value=4.2e-06 Score=91.54 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=44.0
Q ss_pred cccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHHh
Q psy1043 283 PVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLS 346 (1306)
Q Consensus 283 ~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~S 346 (1306)
..++..|+.++.+..|..+.+.+.....++|..+++. .+.|+| +|+++|+ ++.+||-.|
T Consensus 161 ~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs---~Y~akk-iI~t~Ga-Wi~klL~~~ 219 (399)
T KOG2820|consen 161 DKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGS---IYHAKK-IIFTVGA-WINKLLPTS 219 (399)
T ss_pred HHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCC---eeecce-EEEEecH-HHHhhcCcc
Confidence 3456789999999999999887653355666654432 478877 9999998 677887765
No 203
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.22 E-value=8.8e-06 Score=98.71 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=33.7
Q ss_pred CCCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 699 ~~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+....+|+|||||++|+++|.+|.+. |.+|+|+||++
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~~ 43 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRRE-GHTVVVFEREK 43 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecCC
Confidence 34568999999999999999999995 99999999987
No 204
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.21 E-value=7.5e-06 Score=98.38 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=33.0
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
..+||||||+|.+|+++|+.|++ .|.+|+|+|++.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~-~G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAE-RGADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHH-cCCEEEEEecCc
Confidence 57999999999999999999999 799999999985
No 205
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.20 E-value=3e-06 Score=104.09 Aligned_cols=38 Identities=34% Similarity=0.552 Sum_probs=34.3
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDET 116 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~~ 116 (1306)
..|||||||||.+|+++|..||+ +|++|+||||.....
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~-~G~~V~VlE~~~~~G 39 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLAR-AGLKVTVLEKNDRVG 39 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHh-CCCEEEEEEecCCCC
Confidence 36999999999999999999999 899999999876543
No 206
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.20 E-value=1.4e-05 Score=96.07 Aligned_cols=36 Identities=36% Similarity=0.506 Sum_probs=33.4
Q ss_pred CCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 700 ~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
...+||||||+|++|+++|+.|++ .|++|+||||.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~-~G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALAD-AGLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc-CCCEEEEEeCCC
Confidence 357999999999999999999999 599999999986
No 207
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.19 E-value=8.1e-06 Score=98.72 Aligned_cols=55 Identities=13% Similarity=0.254 Sum_probs=44.0
Q ss_pred ccCCCCeEEEeccEEEEEEec--CCCCeEEEEEEEeC--CeEEEEEEcceEEEccCCCC
Q psy1043 284 VKTRPNLHISLHSHVTKVLID--PKNRMAIGVEFVKN--HQRHVIRARKEVILSGGAVN 338 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d--~~~~~~~GV~~~~~--g~~~~v~A~k~VVLaAGai~ 338 (1306)
.++..|++|++++.|++|+++ ++.++|+||++..+ ++...+.+++.||++.|++.
T Consensus 235 ~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 235 YLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred HHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 456789999999999999996 32258999999863 34556788888999999874
No 208
>KOG1298|consensus
Probab=98.19 E-value=5.6e-06 Score=91.67 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=44.7
Q ss_pred hhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHhcC
Q psy1043 906 PIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYLI 972 (1306)
Q Consensus 906 ~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LLl~ 972 (1306)
.++..+|+++..+ .|.+|+.|+ +.|.||++++.+...++..|.- -|+|-|-|..-+--|.
T Consensus 156 ka~slpNV~~eeG-tV~sLlee~-----gvvkGV~yk~k~gee~~~~ApL-TvVCDGcfSnlRrsL~ 215 (509)
T KOG1298|consen 156 KAASLPNVRLEEG-TVKSLLEEE-----GVVKGVTYKNKEGEEVEAFAPL-TVVCDGCFSNLRRSLC 215 (509)
T ss_pred HHhcCCCeEEeee-eHHHHHhcc-----CeEEeEEEecCCCceEEEecce-EEEecchhHHHHHHhc
Confidence 4566789988755 588888887 7999999765444434788887 8999999876655555
No 209
>PRK07208 hypothetical protein; Provisional
Probab=98.19 E-value=4e-05 Score=94.85 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=35.6
Q ss_pred CCCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCCCCC
Q psy1043 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEES 739 (1306)
Q Consensus 699 ~~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 739 (1306)
|++..||||||||++|+++|++|++ .|++|+|||+.+...
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~-~g~~v~v~E~~~~~G 40 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLK-RGYPVTVLEADPVVG 40 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCCC
Confidence 4567899999999999999999999 499999999987653
No 210
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.18 E-value=4.7e-06 Score=88.44 Aligned_cols=32 Identities=34% Similarity=0.534 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 81 DvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
+++|||+|++|+++|+.|++ +|.+|+|+|||.
T Consensus 3 siaIVGaGiAGl~aA~~L~~-aG~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALRE-AGREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHh-cCcEEEEEEcCC
Confidence 68999999999999999999 899999999994
No 211
>PRK06847 hypothetical protein; Provisional
Probab=98.16 E-value=2.2e-05 Score=93.88 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=43.7
Q ss_pred hHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHhc
Q psy1043 900 AKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYL 971 (1306)
Q Consensus 900 ~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LLl 971 (1306)
...+|...+.+.|++|+.+++|++|..++ +. ..|.+.+|+ ++.++. ||.|.|.....+-.+
T Consensus 109 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-----~~-~~v~~~~g~----~~~ad~-vI~AdG~~s~~r~~l 169 (375)
T PRK06847 109 LARILADAARAAGADVRLGTTVTAIEQDD-----DG-VTVTFSDGT----TGRYDL-VVGADGLYSKVRSLV 169 (375)
T ss_pred HHHHHHHHHHHhCCEEEeCCEEEEEEEcC-----CE-EEEEEcCCC----EEEcCE-EEECcCCCcchhhHh
Confidence 33445555667799999999999998765 33 345566775 678876 999999876665544
No 212
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.16 E-value=6.5e-06 Score=100.28 Aligned_cols=58 Identities=24% Similarity=0.396 Sum_probs=42.4
Q ss_pred hhhhhc-CCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHhc
Q psy1043 904 LRPIIA-RPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYL 971 (1306)
Q Consensus 904 L~~~~~-~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LLl 971 (1306)
+...++ ..|++++. ..|+.++.+++ +++.||.+.+|. .+.|+. ||+|+|+|-..++..
T Consensus 102 L~e~Le~~pgV~Ile-~~Vv~li~e~~----g~V~GV~t~~G~----~I~Ad~-VILATGtfL~g~ihi 160 (617)
T TIGR00136 102 MRNALENQPNLSLFQ-GEVEDLILEDN----DEIKGVVTQDGL----KFRAKA-VIITTGTFLRGKIHI 160 (617)
T ss_pred HHHHHHcCCCcEEEE-eEEEEEEEecC----CcEEEEEECCCC----EEECCE-EEEccCcccCCCEEe
Confidence 333333 45888875 47888877621 689999998885 788986 999999997665555
No 213
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=2.5e-06 Score=99.20 Aligned_cols=54 Identities=28% Similarity=0.425 Sum_probs=42.1
Q ss_pred hcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHhc
Q psy1043 908 IARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYL 971 (1306)
Q Consensus 908 ~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LLl 971 (1306)
-...|++|+.+ .|+.|++++. .+|.||.+.+|. .+.|+. |||++|.|-.-++..
T Consensus 111 e~~~NL~l~q~-~v~dli~e~~----~~v~GV~t~~G~----~~~a~a-VVlTTGTFL~G~I~i 164 (621)
T COG0445 111 ENQPNLHLLQG-EVEDLIVEEG----QRVVGVVTADGP----EFHAKA-VVLTTGTFLRGKIHI 164 (621)
T ss_pred hcCCCceehHh-hhHHHhhcCC----CeEEEEEeCCCC----eeecCE-EEEeecccccceEEe
Confidence 34679998864 6888988761 379999999997 778976 999999986555544
No 214
>KOG0042|consensus
Probab=98.15 E-value=1.6e-06 Score=99.79 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=60.2
Q ss_pred CCCCCccceeeccCCcCCCcccchhHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEe---CCeeeeEEEE
Q psy1043 876 INGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK---KGRKDPVLVR 952 (1306)
Q Consensus 876 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~---~G~~~~~~v~ 952 (1306)
+...+..|...+.-+..+.+|.....+. -+.+.|+.+.-+.+|.+|+.+++ +++.|++.+ .|+.+ .|+
T Consensus 205 L~~~~L~Ga~VYyDGQ~nDaRmnl~vAl---TA~r~GA~v~Nh~ev~~Llkd~~----~kv~Ga~~rD~iTG~e~--~I~ 275 (680)
T KOG0042|consen 205 LRKDNLKGAMVYYDGQHNDARMNLAVAL---TAARNGATVLNHVEVVSLLKDKD----GKVIGARARDHITGKEY--EIR 275 (680)
T ss_pred ccccCceeEEEEecCCCchHHHHHHHHH---HHHhcchhhhhHHHHHHHhhCCC----CceeeeEEEEeecCcEE--EEE
Confidence 3344455555555554555565554432 35688999999999999999873 578888854 47777 999
Q ss_pred eCcEEEEcCCCcchHHHhc
Q psy1043 953 ARREVILSAGAIGSPQVYL 971 (1306)
Q Consensus 953 A~k~VVLAAGai~sp~LLl 971 (1306)
|+- ||-|+|.|.-.-..|
T Consensus 276 Ak~-VVNATGpfsDsIr~M 293 (680)
T KOG0042|consen 276 AKV-VVNATGPFSDSIRKM 293 (680)
T ss_pred EEE-EEeCCCCccHHHHhh
Confidence 965 999999986555555
No 215
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.15 E-value=3.7e-06 Score=97.37 Aligned_cols=47 Identities=28% Similarity=0.458 Sum_probs=36.1
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCC
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAV 337 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai 337 (1306)
+...+|++|+ +..|+.|..+++ ++.||... +|. .+.++. ||||+|.+
T Consensus 105 l~~~~nl~i~-~~~V~~l~~e~~--~v~GV~~~-~g~--~~~a~~-vVlaTGtf 151 (392)
T PF01134_consen 105 LESHPNLTII-QGEVTDLIVENG--KVKGVVTK-DGE--EIEADA-VVLATGTF 151 (392)
T ss_dssp HHTSTTEEEE-ES-EEEEEECTT--EEEEEEET-TSE--EEEECE-EEE-TTTG
T ss_pred HhcCCCeEEE-EcccceEEecCC--eEEEEEeC-CCC--EEecCE-EEEecccc
Confidence 3457999997 679999999886 99999874 443 688876 99999994
No 216
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.15 E-value=1.9e-05 Score=94.45 Aligned_cols=36 Identities=47% Similarity=0.688 Sum_probs=33.4
Q ss_pred CCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 700 ~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+.+||+||||+|++|.++|.++++. |.+|+|+|+++
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecC
Confidence 4579999999999999999999994 99999999985
No 217
>KOG2415|consensus
Probab=98.14 E-value=6e-06 Score=92.02 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=51.3
Q ss_pred cchhhhccccccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe-----CCe-------EEEEEEcceEEEccCCCC--c
Q psy1043 274 CSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK-----NHQ-------RHVIRARKEVILSGGAVN--S 339 (1306)
Q Consensus 274 ~s~~~~~l~~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~-----~g~-------~~~v~A~k~VVLaAGai~--S 339 (1306)
......||...++.-|++|+.+.-+.+++++.++ .|.||...+ +|. -..+.|+. -|+|-|.-+ |
T Consensus 182 L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edg-sVkGiaT~D~GI~k~G~pKd~FerGme~hak~-TifAEGc~G~Ls 259 (621)
T KOG2415|consen 182 LGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDG-SVKGIATNDVGISKDGAPKDTFERGMEFHAKV-TIFAEGCHGSLS 259 (621)
T ss_pred HHHHHHHHHHHHHhhCceeccccchhheeEcCCC-cEeeEeeccccccCCCCccccccccceeccee-EEEeccccchhH
Confidence 3445667777788889999999999999998876 889987754 121 13577754 888888765 3
Q ss_pred HHHHHHhC
Q psy1043 340 PQILMLSG 347 (1306)
Q Consensus 340 p~LLl~SG 347 (1306)
-+++..-+
T Consensus 260 kqi~kkf~ 267 (621)
T KOG2415|consen 260 KQIIKKFD 267 (621)
T ss_pred HHHHHHhC
Confidence 55555443
No 218
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.14 E-value=4e-06 Score=99.71 Aligned_cols=61 Identities=23% Similarity=0.232 Sum_probs=46.5
Q ss_pred HhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHH
Q psy1043 901 KAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQV 969 (1306)
Q Consensus 901 ~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~L 969 (1306)
...|....++.|++|+++++|+++..++ ++++.|...+|+.. .+.++. ||||+|.+.+.-|
T Consensus 262 ~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-----~~V~~v~~~~g~~~--~i~AD~-VVLAtGrf~s~GL 322 (422)
T PRK05329 262 QNALRRAFERLGGRIMPGDEVLGAEFEG-----GRVTAVWTRNHGDI--PLRARH-FVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEeC-----CEEEEEEeeCCceE--EEECCE-EEEeCCCcccCce
Confidence 3345556778899999999999998876 57777776667655 788987 9999998744333
No 219
>PRK06184 hypothetical protein; Provisional
Probab=98.13 E-value=2.9e-05 Score=96.50 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=32.9
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+++||+|||+|++|+++|+.|++ .|++|+||||.+
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-~Gi~v~viE~~~ 36 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-RGVSFRLIEKAP 36 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence 57999999999999999999999 599999999986
No 220
>PRK09126 hypothetical protein; Provisional
Probab=98.13 E-value=3.6e-05 Score=92.59 Aligned_cols=34 Identities=44% Similarity=0.578 Sum_probs=32.5
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+|||||||+|++|+++|+.|++ .|++|+|+||.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~-~G~~v~v~E~~~ 36 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG-SGLKVTLIERQP 36 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh-CCCcEEEEeCCC
Confidence 6999999999999999999999 599999999986
No 221
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.13 E-value=7.9e-06 Score=102.19 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=45.7
Q ss_pred hhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEE---eCCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 902 AYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVV---KKGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 902 ~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~---~~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
..|...+.+.|++|+.++.|++|+.+++ ++|+||.. .+|+.+ .|+|+. ||||+|+++.
T Consensus 130 ~~L~~~~~~~gi~i~~~~~~~~Li~~~~----g~v~Gv~~~~~~~g~~~--~i~Aka-VVLATGG~~~ 190 (570)
T PRK05675 130 HTLYQGNLKNGTTFLNEWYAVDLVKNQD----GAVVGVIAICIETGETV--YIKSKA-TVLATGGAGR 190 (570)
T ss_pred HHHHHHHhccCCEEEECcEEEEEEEcCC----CeEEEEEEEEcCCCcEE--EEecCe-EEECCCCccc
Confidence 3344556678999999999999998631 79999984 357655 788974 9999999974
No 222
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.11 E-value=3.3e-05 Score=93.73 Aligned_cols=36 Identities=33% Similarity=0.582 Sum_probs=33.5
Q ss_pred CCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 700 ~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
..+|||||||+|++|+++|+.|++ .|++|+||||.+
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~ 51 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKD-SGLRIALIEAQP 51 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 347999999999999999999999 599999999986
No 223
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.10 E-value=1.4e-05 Score=91.98 Aligned_cols=33 Identities=58% Similarity=0.848 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 703 yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
|||+|||+|++|+++|+.|++ .|.+|+||||..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~-~g~~v~vie~~~ 33 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD-KGLRVLLLEKKS 33 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccC
Confidence 799999999999999999999 599999999986
No 224
>PRK06834 hypothetical protein; Provisional
Probab=98.10 E-value=2.6e-05 Score=95.83 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=44.1
Q ss_pred hhHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHhc
Q psy1043 899 TAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYL 971 (1306)
Q Consensus 899 ~~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LLl 971 (1306)
.....|...+++.|++|+.+++|+.|..++ +.+ .|++.+|. +++++. ||.|.|+..+-+-++
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~-----~~v-~v~~~~g~----~i~a~~-vVgADG~~S~vR~~l 162 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDD-----TGV-DVELSDGR----TLRAQY-LVGCDGGRSLVRKAA 162 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-----CeE-EEEECCCC----EEEeCE-EEEecCCCCCcHhhc
Confidence 344556556667799999999999998876 333 24555664 788987 999999876544444
No 225
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.10 E-value=2.6e-05 Score=94.65 Aligned_cols=38 Identities=32% Similarity=0.480 Sum_probs=34.5
Q ss_pred CCCCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCC
Q psy1043 76 LYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114 (1306)
Q Consensus 76 ~~~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~ 114 (1306)
+..+|||||||||++|+++|..|++ .|++|+|||+.+.
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~ 52 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKD-SGLRIALIEAQPA 52 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhc-CCCEEEEEecCCc
Confidence 3457999999999999999999999 7999999999863
No 226
>PLN02985 squalene monooxygenase
Probab=98.09 E-value=5e-05 Score=93.61 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=33.1
Q ss_pred CCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 700 ~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
..+|||||||+|++|+++|+.|++ .|++|+||||..
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~-~G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAK-DGRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHH-cCCeEEEEECcC
Confidence 357999999999999999999999 499999999974
No 227
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.08 E-value=1.7e-05 Score=97.27 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=33.1
Q ss_pred CCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 700 ~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+.+||+||||+|++|+.+|.+|++ .|++|+|+|+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAAD-LGLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 457999999999999999999999 599999999974
No 228
>KOG0042|consensus
Probab=98.08 E-value=3e-06 Score=97.66 Aligned_cols=79 Identities=24% Similarity=0.266 Sum_probs=56.6
Q ss_pred CccceeeecccccCCcccchhhhccccccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEcc
Q psy1043 257 YQTGFMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSG 334 (1306)
Q Consensus 257 ~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaA 334 (1306)
...|...+..+-.+.+|.....+. -+.+.|+++.-+.+|.+|+.++++ ++.|+++++ .|+++.|+|+. ||=|+
T Consensus 209 ~L~Ga~VYyDGQ~nDaRmnl~vAl---TA~r~GA~v~Nh~ev~~Llkd~~~-kv~Ga~~rD~iTG~e~~I~Ak~-VVNAT 283 (680)
T KOG0042|consen 209 NLKGAMVYYDGQHNDARMNLAVAL---TAARNGATVLNHVEVVSLLKDKDG-KVIGARARDHITGKEYEIRAKV-VVNAT 283 (680)
T ss_pred CceeEEEEecCCCchHHHHHHHHH---HHHhcchhhhhHHHHHHHhhCCCC-ceeeeEEEEeecCcEEEEEEEE-EEeCC
Confidence 344544444444455565544332 245778999999999999998876 899999876 68899999954 88899
Q ss_pred CCCCcH
Q psy1043 335 GAVNSP 340 (1306)
Q Consensus 335 Gai~Sp 340 (1306)
|-+.-.
T Consensus 284 GpfsDs 289 (680)
T KOG0042|consen 284 GPFSDS 289 (680)
T ss_pred CCccHH
Confidence 977433
No 229
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.08 E-value=2.5e-05 Score=91.68 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=48.7
Q ss_pred hhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHh
Q psy1043 904 LRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVY 970 (1306)
Q Consensus 904 L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LL 970 (1306)
|...+++.|++++.+++|+++.+++ +++++|.+.++... .+.|++ ||||+|+|-|..|+
T Consensus 269 L~~~~~~~Gg~il~g~~V~~i~~~~-----~~v~~V~t~~g~~~--~l~AD~-vVLAaGaw~S~gL~ 327 (419)
T TIGR03378 269 LKHRFEQLGGVMLPGDRVLRAEFEG-----NRVTRIHTRNHRDI--PLRADH-FVLASGSFFSNGLV 327 (419)
T ss_pred HHHHHHHCCCEEEECcEEEEEEeeC-----CeEEEEEecCCccc--eEECCE-EEEccCCCcCHHHH
Confidence 5556678899999999999999887 78999887776434 788988 99999999777775
No 230
>PRK06185 hypothetical protein; Provisional
Probab=98.07 E-value=3.7e-05 Score=93.05 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=32.9
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
.+|||||||+|++|+++|+.|++ .|++|+|||+.+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~-~G~~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLAR-AGVDVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-CCCcEEEEecCC
Confidence 47999999999999999999999 599999999985
No 231
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.06 E-value=2.1e-05 Score=96.80 Aligned_cols=35 Identities=43% Similarity=0.708 Sum_probs=32.6
Q ss_pred CCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCC
Q psy1043 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735 (1306)
Q Consensus 700 ~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G 735 (1306)
...||+||||||++|+.+|.+|++ .|++|+|+|++
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~ 36 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQ-LGLKTALVEKG 36 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHh-CCCeEEEEEcc
Confidence 357999999999999999999999 59999999996
No 232
>KOG1298|consensus
Probab=98.06 E-value=1.2e-05 Score=89.16 Aligned_cols=52 Identities=15% Similarity=0.258 Sum_probs=40.3
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe-CCeEEEEEEcceEEEccCCCCc
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK-NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~-~g~~~~v~A~k~VVLaAGai~S 339 (1306)
++..+|+++..+ .|.+|+.|++ .+.||++.. .+++.+..|.- -|+|-|.+..
T Consensus 157 a~slpNV~~eeG-tV~sLlee~g--vvkGV~yk~k~gee~~~~ApL-TvVCDGcfSn 209 (509)
T KOG1298|consen 157 AASLPNVRLEEG-TVKSLLEEEG--VVKGVTYKNKEGEEVEAFAPL-TVVCDGCFSN 209 (509)
T ss_pred HhcCCCeEEeee-eHHHHHhccC--eEEeEEEecCCCceEEEecce-EEEecchhHH
Confidence 456789998765 4888887776 999999975 45667788865 8999998743
No 233
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.06 E-value=2.7e-05 Score=93.27 Aligned_cols=33 Identities=36% Similarity=0.523 Sum_probs=31.5
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G 735 (1306)
.+||+|||+|++|+++|+.|++ .|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-AGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-CCCcEEEEccC
Confidence 5899999999999999999999 59999999997
No 234
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.06 E-value=5.4e-05 Score=86.75 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=47.7
Q ss_pred hhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHhcC
Q psy1043 904 LRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYLI 972 (1306)
Q Consensus 904 L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LLl~ 972 (1306)
+....+..|++|+++++|..|++++ +.+.+|.+.+|. ++.++. ||||-|--+.-.+-++
T Consensus 179 i~~~l~~~G~ei~f~t~VeDi~~~~-----~~~~~v~~~~g~----~i~~~~-vvlA~Grsg~dw~~~l 237 (486)
T COG2509 179 IREYLESLGGEIRFNTEVEDIEIED-----NEVLGVKLTKGE----EIEADY-VVLAPGRSGRDWFEML 237 (486)
T ss_pred HHHHHHhcCcEEEeeeEEEEEEecC-----CceEEEEccCCc----EEecCE-EEEccCcchHHHHHHH
Confidence 4456678899999999999999998 568899988887 788987 9999996554444443
No 235
>PRK06185 hypothetical protein; Provisional
Probab=98.06 E-value=2.3e-05 Score=94.78 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=33.0
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
.+|||||||+|++|+++|..|++ .|++|+|||+.+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~-~G~~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLAR-AGVDVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-CCCcEEEEecCC
Confidence 57999999999999999999999 799999999885
No 236
>KOG2844|consensus
Probab=98.05 E-value=7.8e-06 Score=96.45 Aligned_cols=202 Identities=16% Similarity=0.162 Sum_probs=110.1
Q ss_pred CCCCccEEEECCChhHHHHHHHHhCCCCCE-EEEEcCCCCCCCCCcchhhHHhhhcCCCCCccccccCcccccccCCCee
Q psy1043 76 LYPEYDFIVVGAGSAGAVVANRLSEIENWK-ILLLEAGGDETDISDVPVLAAYLQLSGLDWSYKTEPSSTSCLAMEHNRC 154 (1306)
Q Consensus 76 ~~~~yDvIIVGsG~aG~~~A~rLae~~G~~-VLvLE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 154 (1306)
.....|+||||+|.+|+.+|+.||+ .|.+ ++++|+-.
T Consensus 36 ~~~~A~vvViggG~~g~~~~yhlak-~g~k~avlle~~~----------------------------------------- 73 (856)
T KOG2844|consen 36 LPSTADVVVIGGGSLGCSTAYHLAK-RGMKGAVLLERSR----------------------------------------- 73 (856)
T ss_pred CCCcccEEEEcCCchhHHHHHHHHH-ccccceEEEeeee-----------------------------------------
Confidence 3457999999999999999999999 7998 55555442
Q ss_pred eecCcccccCcccccceEEe--cCChhhHHHHHhcCCCCCChhhHHHHHHHhccCCCCCCCCCCCCCCCCceeeecCCCc
Q psy1043 155 NWPRGKVVGGSSVLNYMLYV--RGNRNDYNHWESLGNPGWGAAEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWH 232 (1306)
Q Consensus 155 ~~~~g~~lGGsS~~n~~~~~--r~~~~d~~~w~~~g~~~w~~~~~~~y~~~~e~~~~~~~~~~~~~~~~g~l~~~~~~~~ 232 (1306)
.--|++.+-++.++ |+.+.+.+.... +-...|.+.|.... ...-....|.+.+......
T Consensus 74 ------ltsgttwhtagl~~~lr~~dv~~qlia~---------~~~~l~~~leeEtg----l~tGwiq~G~~~lAs~~~R 134 (856)
T KOG2844|consen 74 ------LTSGTTWHTAGLLWQLFPSDVELQLIAH---------TSRVLYRELEEETG----LHTGWIQNGGIFLASNRQR 134 (856)
T ss_pred ------eccccccccccceeeccCCchhHHHHHH---------HHHHHHHHHHHhcC----CCcceecCCceEEecCHHH
Confidence 11244555555544 444444443321 11122333333221 1122234566666665544
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCCC---------CccceeeecccccCCcc--cchhhhccccccCCCCeEEEeccEEEEE
Q psy1043 233 TPLAEAFVRGGEELGYENRDINGE---------YQTGFMVAQGTVRNGAR--CSTSKAFLQPVKTRPNLHISLHSHVTKV 301 (1306)
Q Consensus 233 ~~~~~~~~~~~~~~G~~~~~~~~~---------~~~g~~~~~~~~~~g~r--~s~~~~~l~~~~~~~nl~I~~~~~V~~I 301 (1306)
....+.++......|.+..-+.-. ...++.-..+...+|.- ....+++. .++++-|+.|+.+|.|++|
T Consensus 135 ~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala-~~A~~~GA~viE~cpV~~i 213 (856)
T KOG2844|consen 135 LDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALA-RAASALGALVIENCPVTGL 213 (856)
T ss_pred HHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHHHH-HHHHhcCcEEEecCCcceE
Confidence 444445555555555542111000 00011111111122221 12233333 4567889999999999999
Q ss_pred EecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHHhC
Q psy1043 302 LIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSG 347 (1306)
Q Consensus 302 ~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~SG 347 (1306)
....+ +..||+...+ .|++.+ ||=|||. +.-.+--++|
T Consensus 214 ~~~~~--~~~gVeT~~G----~iet~~-~VNaaGv-WAr~Vg~m~g 251 (856)
T KOG2844|consen 214 HVETD--KFGGVETPHG----SIETEC-VVNAAGV-WAREVGAMAG 251 (856)
T ss_pred EeecC--CccceeccCc----ceecce-EEechhH-HHHHhhhhcC
Confidence 99876 4558987654 378876 8888884 4444444454
No 237
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.04 E-value=2.1e-05 Score=96.62 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=32.7
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
..|||||||+|++|+.+|.+|++ .|++|+|+|+++
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~-~G~~v~liE~~~ 38 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAK-LGKRVAVIERYR 38 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-CCCEEEEEeccc
Confidence 46999999999999999999999 599999999974
No 238
>PLN02463 lycopene beta cyclase
Probab=98.03 E-value=2.5e-05 Score=94.21 Aligned_cols=35 Identities=40% Similarity=0.590 Sum_probs=32.6
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
..|||||||+|++|+++|+.|++ .|++|+|||+.+
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~-~Gl~V~liE~~~ 61 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSE-AGLSVCCIDPSP 61 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHH-CCCeEEEeccCc
Confidence 46999999999999999999999 599999999975
No 239
>PRK07190 hypothetical protein; Provisional
Probab=98.02 E-value=4.3e-05 Score=93.81 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=32.6
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
..+||||||||++|+++|+.|++ .|.+|+||||.+
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar-~Gi~V~llEr~~ 38 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQL-CGLNTVIVDKSD 38 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHH-cCCCEEEEeCCC
Confidence 35999999999999999999999 599999999986
No 240
>KOG2404|consensus
Probab=98.01 E-value=2.7e-05 Score=84.16 Aligned_cols=48 Identities=25% Similarity=0.386 Sum_probs=40.0
Q ss_pred CeEEEeccEEEEEEecCCCCeEEEEEEEe-CCeEEEEEEcceEEEccCCCCc
Q psy1043 289 NLHISLHSHVTKVLIDPKNRMAIGVEFVK-NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 289 nl~I~~~~~V~~I~~d~~~~~~~GV~~~~-~g~~~~v~A~k~VVLaAGai~S 339 (1306)
-++|.++++|++|+.+++ +|.||+|.+ ++++..+.++. ||+|+|+|.-
T Consensus 159 ~~ki~~nskvv~il~n~g--kVsgVeymd~sgek~~~~~~~-VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRNNG--KVSGVEYMDASGEKSKIIGDA-VVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeecCCC--eEEEEEEEcCCCCccceecCc-eEEecCCcCc
Confidence 489999999999996555 999999986 55666677765 9999999985
No 241
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.01 E-value=3.7e-05 Score=92.25 Aligned_cols=32 Identities=41% Similarity=0.641 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
||||||||++|+++|+.|++ .|++|+|+||.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~-~G~~v~v~Er~~ 32 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR-SGLKIALIEATP 32 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc-CCCEEEEEeCCC
Confidence 89999999999999999999 599999999997
No 242
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.00 E-value=5.5e-05 Score=90.91 Aligned_cols=34 Identities=41% Similarity=0.665 Sum_probs=32.4
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
.+||||||+|++|+++|+.|++ .|++|+|||+++
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~-~G~~v~v~E~~~ 38 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQ-SGLRVALLAPRA 38 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCC
Confidence 6899999999999999999999 599999999986
No 243
>PRK08013 oxidoreductase; Provisional
Probab=97.99 E-value=2.3e-05 Score=94.40 Aligned_cols=35 Identities=34% Similarity=0.476 Sum_probs=32.9
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
++|||||||+|++|+++|+.|++ .|++|+|||+.+
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~-~G~~v~viE~~~ 36 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQG-SGLRVAVLEQRV 36 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhh-CCCEEEEEeCCC
Confidence 46999999999999999999999 599999999986
No 244
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.99 E-value=9.8e-05 Score=89.26 Aligned_cols=34 Identities=35% Similarity=0.616 Sum_probs=32.1
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+|||+|||+|++|+++|+.|++ .|++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQG-SGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence 5899999999999999999999 599999999985
No 245
>PRK08244 hypothetical protein; Provisional
Probab=97.99 E-value=7.7e-05 Score=92.50 Aligned_cols=34 Identities=26% Similarity=0.553 Sum_probs=32.3
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+|||+|||+|++|+++|+.|++ .|++|+||||.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viEr~~ 35 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELAL-AGVKTCVIERLK 35 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 5899999999999999999999 599999999986
No 246
>PRK07045 putative monooxygenase; Reviewed
Probab=97.98 E-value=5.2e-05 Score=91.04 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=33.0
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
..+||+|||+|++|+++|+.|++ .|++|+|+||.+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~-~G~~v~v~E~~~ 38 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGA-RGHSVTVVERAA 38 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHh-cCCcEEEEeCCC
Confidence 46999999999999999999999 599999999986
No 247
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.98 E-value=3.9e-05 Score=92.69 Aligned_cols=35 Identities=29% Similarity=0.501 Sum_probs=31.5
Q ss_pred CccEEEECCChHHHHHHHHHHcCC-CCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQK-NWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~-G~~VlVLE~G~ 736 (1306)
.|||||||+|++|+++|+.|++.. |++|+||||.+
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 389999999999999999999941 49999999986
No 248
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.97 E-value=3.7e-05 Score=93.87 Aligned_cols=33 Identities=36% Similarity=0.577 Sum_probs=31.5
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G 735 (1306)
+||+||||+|++|+.+|.+|++ .|++|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN-HGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh-CCCcEEEEecC
Confidence 6999999999999999999999 59999999995
No 249
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.96 E-value=5.5e-06 Score=98.06 Aligned_cols=34 Identities=35% Similarity=0.560 Sum_probs=30.3
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+|||||||+|++|+++|+.|++. |++|+|+||.+
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~ 34 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRP 34 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred CceEEEECCCHHHHHHHHHHHhc-ccccccchhcc
Confidence 58999999999999999999995 99999999986
No 250
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.96 E-value=3.1e-05 Score=94.00 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=33.1
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~ 114 (1306)
...+|+|||||++|+++|.+|.+ .|++|+|+|+++.
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~-~G~~v~vfE~~~~ 44 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRR-EGHTVVVFEREKQ 44 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHh-cCCeEEEEecCCC
Confidence 46899999999999999999999 7999999999863
No 251
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.96 E-value=3.1e-05 Score=94.50 Aligned_cols=34 Identities=50% Similarity=0.821 Sum_probs=31.9
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G 735 (1306)
++|||||||+|++|+.+|.+|++ .|++|+|+|++
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~~ 34 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAE-HGAKALLVEAK 34 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH-CCCcEEEeccc
Confidence 36999999999999999999999 59999999996
No 252
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.96 E-value=8.6e-05 Score=89.46 Aligned_cols=34 Identities=44% Similarity=0.585 Sum_probs=31.9
Q ss_pred CCccEEEECCChHHHHHHHHHHcCC---CCEEEEECCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQK---NWKVLLLEAG 735 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~---G~~VlVLE~G 735 (1306)
..+||+|||+|++|+++|+.|++ . |++|+||||.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~-~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSR-LSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhh-cccCCCEEEEEeCC
Confidence 46999999999999999999998 5 9999999996
No 253
>PRK06126 hypothetical protein; Provisional
Probab=97.96 E-value=7.8e-05 Score=93.69 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=32.7
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
.++||+|||+|++|+++|+.|++ .|++|+||||.+
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~-~G~~v~viEr~~ 40 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGR-RGVDSILVERKD 40 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence 46999999999999999999999 599999999975
No 254
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.96 E-value=3e-05 Score=93.78 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=33.3
Q ss_pred CCCccEEEECCChHHHHHHHHHHcCCCCE-EEEECCCC
Q psy1043 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWK-VLLLEAGG 736 (1306)
Q Consensus 700 ~~~yDvIVIGsG~aG~~aA~~Lae~~G~~-VlVLE~G~ 736 (1306)
.+.+||+|||+|.+|+++|++|.+ .|.. ++|+||..
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~-~g~~~~~i~Ek~~ 42 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQ-AGVPDFVIFEKRD 42 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHH-cCCCcEEEEEccC
Confidence 457999999999999999999999 5998 99999996
No 255
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.95 E-value=8.4e-05 Score=86.13 Aligned_cols=44 Identities=30% Similarity=0.510 Sum_probs=37.6
Q ss_pred CCccEEEECCChHHHHHHHHHHc-CCCCEEEEECCCCCCCCCCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSE-QKNWKVLLLEAGGEESPLSDI 744 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae-~~G~~VlVLE~G~~~~~~~~~ 744 (1306)
++||||+||+|+.|+++++.|++ .+.++|.|+||-+....+++.
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ESS~ 46 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALESSN 46 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhcCC
Confidence 47999999999999999999998 579999999999866554433
No 256
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.94 E-value=4.5e-05 Score=91.45 Aligned_cols=32 Identities=41% Similarity=0.744 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHHcCCCCEEEEECCC
Q psy1043 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735 (1306)
Q Consensus 703 yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G 735 (1306)
|||||||+|++|+++|+.|++ .|++|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~-~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR-AGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh-CCCcEEEEECC
Confidence 899999999999999999999 59999999997
No 257
>PRK11445 putative oxidoreductase; Provisional
Probab=97.94 E-value=0.00012 Score=86.38 Aligned_cols=33 Identities=36% Similarity=0.634 Sum_probs=30.9
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
.|||+|||+|++|+++|..|++ . ++|+|||+.+
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~-~-~~V~liE~~~ 33 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAG-K-MKVIAIDKKH 33 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhc-c-CCEEEEECCC
Confidence 3899999999999999999998 6 9999999986
No 258
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.94 E-value=5.1e-05 Score=91.23 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=32.2
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
.+||+|||+|++|+++|+.|++ .|++|+||||.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~-~G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL-AGIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh-cCCCEEEEEcCC
Confidence 5899999999999999999999 599999999986
No 259
>PRK08244 hypothetical protein; Provisional
Probab=97.93 E-value=6.3e-05 Score=93.26 Aligned_cols=34 Identities=26% Similarity=0.511 Sum_probs=32.3
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
+|||+|||+|++|+++|..|++ .|++|+||||.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viEr~~ 35 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELAL-AGVKTCVIERLK 35 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 5899999999999999999999 799999999986
No 260
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.91 E-value=4.4e-06 Score=90.44 Aligned_cols=62 Identities=29% Similarity=0.409 Sum_probs=37.3
Q ss_pred hccccccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHHhC
Q psy1043 279 AFLQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSG 347 (1306)
Q Consensus 279 ~~l~~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~SG 347 (1306)
.|+...+++.+++|++++.|++|..+++ + --|.+ +++ .++.|+. ||+|+|.+..|+.+..-|
T Consensus 86 ~yl~~~~~~~~l~i~~~~~V~~v~~~~~--~-w~v~~-~~~--~~~~a~~-VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 86 DYLQEYAERFGLEIRFNTRVESVRRDGD--G-WTVTT-RDG--RTIRADR-VVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHHTTGGEETS--EEEEEEETT--T-EEEEE-TTS---EEEEEE-EEE---SSCSB---S-TT
T ss_pred HHHHHHHhhcCcccccCCEEEEEEEecc--E-EEEEE-Eec--ceeeeee-EEEeeeccCCCCcccccc
Confidence 3565666667788999999999999876 3 23443 233 5677876 999999999999876554
No 261
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.91 E-value=6.1e-05 Score=91.39 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=32.6
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
.+|||||||+|++|+++|+.||+ .|++|+||||..
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~-~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAK-GGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh-CCCcEEEEecCC
Confidence 36999999999999999999999 599999999974
No 262
>KOG2853|consensus
Probab=97.90 E-value=0.00034 Score=76.56 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=33.4
Q ss_pred CCCCccEEEECCChhHHHHHHHHhC---CCCCEEEEEcCCC
Q psy1043 76 LYPEYDFIVVGAGSAGAVVANRLSE---IENWKILLLEAGG 113 (1306)
Q Consensus 76 ~~~~yDvIIVGsG~aG~~~A~rLae---~~G~~VLvLE~G~ 113 (1306)
....+||+|||+|..|+++|+-|-| +.|++|+|+|+..
T Consensus 83 f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd 123 (509)
T KOG2853|consen 83 FPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD 123 (509)
T ss_pred cccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence 4568999999999999999998865 4689999999986
No 263
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.90 E-value=9.9e-05 Score=88.67 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=33.2
Q ss_pred CCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 700 ~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+..|||||||+|++|+++|+.|++ .|++|+|||+.+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~-~G~~v~liE~~~ 40 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALAR-AGASVALVAPEP 40 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc-CCCeEEEEeCCC
Confidence 356999999999999999999999 599999999985
No 264
>PRK07233 hypothetical protein; Provisional
Probab=97.90 E-value=7.1e-05 Score=91.43 Aligned_cols=56 Identities=20% Similarity=0.082 Sum_probs=41.9
Q ss_pred hhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHh
Q psy1043 904 LRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVY 970 (1306)
Q Consensus 904 L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LL 970 (1306)
|...+++.|++|+++++|++|..++ ++++++. .+++ .+.++. ||+|+..-..+.||
T Consensus 204 l~~~l~~~g~~v~~~~~V~~i~~~~-----~~~~~~~-~~~~----~~~ad~-vI~a~p~~~~~~ll 259 (434)
T PRK07233 204 LAEAIEARGGEIRLGTPVTSVVIDG-----GGVTGVE-VDGE----EEDFDA-VISTAPPPILARLV 259 (434)
T ss_pred HHHHHHhcCceEEeCCCeeEEEEcC-----CceEEEE-eCCc----eEECCE-EEECCCHHHHHhhc
Confidence 4445667789999999999998876 5666665 3444 678987 99999976666654
No 265
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.89 E-value=0.0001 Score=92.40 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=33.4
Q ss_pred CCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 700 ~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
..++||+|||+|++|+++|+.|++ .|++|+||||.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~-~G~~v~v~Er~~ 43 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQ-YGVRVLVLERWP 43 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 357999999999999999999999 599999999986
No 266
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.89 E-value=0.00016 Score=86.74 Aligned_cols=35 Identities=37% Similarity=0.657 Sum_probs=32.4
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
++|||+|||+|++|+++|+.|++ .|++|+|+|+.+
T Consensus 2 ~~~dv~IvGgG~aGl~~A~~L~~-~G~~v~l~E~~~ 36 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATALGFAK-QGRSVAVIEGGE 36 (384)
T ss_pred CcccEEEECcCHHHHHHHHHHHh-CCCcEEEEcCCC
Confidence 46999999999999999999999 599999999874
No 267
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.89 E-value=3.5e-05 Score=92.41 Aligned_cols=30 Identities=37% Similarity=0.614 Sum_probs=28.5
Q ss_pred EEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 83 IVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 83 IIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
||||+|++|+++|.+|++ .|.+|+|||+++
T Consensus 1 vIIGgG~aGl~aAi~aa~-~G~~V~llEk~~ 30 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAR-EGLSVLLLEKNK 30 (400)
T ss_pred CEEEEeHHHHHHHHHHHh-cCCcEEEEecCc
Confidence 699999999999999999 799999999986
No 268
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.87 E-value=5.1e-05 Score=94.97 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=46.7
Q ss_pred hHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEE---eCCeeeeEEEEeCcEEEEcCCCcch
Q psy1043 900 AKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVV---KKGRKDPVLVRARREVILSAGAIGS 966 (1306)
Q Consensus 900 ~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~---~~G~~~~~~v~A~k~VVLAAGai~s 966 (1306)
....|...+.+.|++|++++.|++|+.++ ++|+||.. .+|+.. .|+|+ .||||+|+++.
T Consensus 121 i~~~L~~~~~~~gi~i~~~~~~~~Li~~~-----g~v~Ga~~~~~~~g~~~--~i~Ak-aVILATGG~~~ 182 (565)
T TIGR01816 121 ILHTLYQQNLKADTSFFNEYFALDLLMED-----GECRGVIAYCLETGEIH--RFRAK-AVVLATGGYGR 182 (565)
T ss_pred HHHHHHHHHHhCCCEEEeccEEEEEEeeC-----CEEEEEEEEEcCCCcEE--EEEeC-eEEECCCCccc
Confidence 33445556667899999999999999876 79999984 356655 78896 59999999975
No 269
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.87 E-value=0.00011 Score=88.17 Aligned_cols=32 Identities=41% Similarity=0.623 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHcCCC-CEEEEECCCC
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQKN-WKVLLLEAGG 736 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~~G-~~VlVLE~G~ 736 (1306)
||||||+|++|+++|+.|++ .| ++|+|+||.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~-~G~~~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR-LGKIKIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhc-CCCceEEEEeCCC
Confidence 89999999999999999999 59 9999999986
No 270
>PLN02985 squalene monooxygenase
Probab=97.86 E-value=0.00013 Score=90.12 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=33.2
Q ss_pred CCCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 77 YPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 77 ~~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
...|||||||+|++|+++|..|++ .|++|+|||+..
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~-~G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAK-DGRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHH-cCCeEEEEECcC
Confidence 357999999999999999999999 799999999874
No 271
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.86 E-value=0.0002 Score=88.11 Aligned_cols=33 Identities=45% Similarity=0.693 Sum_probs=31.1
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G 735 (1306)
+|||||||||++|+.+|.+|++ .|++|+|||++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~-~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQ-LGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence 4999999999999999999999 59999999994
No 272
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.86 E-value=0.00013 Score=87.70 Aligned_cols=35 Identities=34% Similarity=0.587 Sum_probs=32.7
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
++|||||||+|++|+++|+.|++ .|++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~-~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQ-HGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence 46999999999999999999999 599999999975
No 273
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=8.7e-05 Score=84.46 Aligned_cols=35 Identities=40% Similarity=0.684 Sum_probs=31.2
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCE-EEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWK-VLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~-VlVLE~G~ 736 (1306)
+.|||||||||++|++||.++++ +|++ ++|+|++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r-~~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAAR-AGLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHH-cCCCcEEEEecCC
Confidence 46999999999999999999999 5998 77777764
No 274
>PRK06126 hypothetical protein; Provisional
Probab=97.85 E-value=0.00017 Score=90.64 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=32.8
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
.++||+|||+|++|+++|..|++ .|++|+|||+.+
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~-~G~~v~viEr~~ 40 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGR-RGVDSILVERKD 40 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence 57999999999999999999999 799999999875
No 275
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.85 E-value=8.6e-05 Score=91.31 Aligned_cols=35 Identities=37% Similarity=0.569 Sum_probs=32.5
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
.+||+||||+|++|+.+|.+|++ .|++|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~-~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQ-LGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHH-CCCcEEEEeccc
Confidence 46999999999999999999999 499999999973
No 276
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.85 E-value=7.3e-05 Score=93.57 Aligned_cols=35 Identities=26% Similarity=0.542 Sum_probs=32.4
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+.|||||||||+||+++|.+|++ .|++|+|+|++.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar-~g~~V~liE~~~ 37 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGR-AKLDTLIIEKDD 37 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence 46999999999999999999999 599999999963
No 277
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.84 E-value=7.6e-05 Score=89.46 Aligned_cols=34 Identities=18% Similarity=0.424 Sum_probs=32.1
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
.+||+|||+|++|+++|+.|++ .|++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHK-AGIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHH-CCCCEEEEECCC
Confidence 4899999999999999999999 599999999986
No 278
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.84 E-value=5.8e-05 Score=92.19 Aligned_cols=33 Identities=36% Similarity=0.454 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
|||||||+|.+|+.+|..+++ .|.+|+|||++.
T Consensus 1 yDViVIGaG~AGl~aA~ala~-~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAAR-MGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHH-CCCCEEEEeccc
Confidence 799999999999999999998 799999999874
No 279
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.84 E-value=7e-05 Score=89.98 Aligned_cols=32 Identities=38% Similarity=0.645 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
||||||+|++|+++|+.|++ .|++|+|||+.+
T Consensus 1 DviIiGaG~AGl~~A~~la~-~g~~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh-CCCeEEEEccCC
Confidence 89999999999999999998 599999999985
No 280
>KOG2665|consensus
Probab=97.83 E-value=7.2e-05 Score=80.87 Aligned_cols=211 Identities=19% Similarity=0.194 Sum_probs=115.1
Q ss_pred CCCccEEEECCChhHHHHHHHHhC-CCCCEEEEEcCCCCCCCCCcchhhHHhhhcCCCCCccccccCcccccccCCCeee
Q psy1043 77 YPEYDFIVVGAGSAGAVVANRLSE-IENWKILLLEAGGDETDISDVPVLAAYLQLSGLDWSYKTEPSSTSCLAMEHNRCN 155 (1306)
Q Consensus 77 ~~~yDvIIVGsG~aG~~~A~rLae-~~G~~VLvLE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 155 (1306)
.+.||.||||+|..|++.|.+|+- .++++|+|||+..... ..+.
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la-----------------------~hqS------------ 90 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA-----------------------VHQS------------ 90 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc-----------------------eeec------------
Confidence 368999999999999999999985 5799999999885211 0000
Q ss_pred ecCcccccCcccccceEEecCChhhHHHHHhcCCCCCChhhHHHHHHHhccCCCCCCCCCCCCCCCCceeeecCCCccHH
Q psy1043 156 WPRGKVVGGSSVLNYMLYVRGNRNDYNHWESLGNPGWGAAEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPL 235 (1306)
Q Consensus 156 ~~~g~~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~~~~y~~~~e~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 235 (1306)
| --|..+.+++|..+..- + +++... ..+-+..|+++-+- .+...|.+-+...+..-|.
T Consensus 91 ---g---hNSgViHaGIYY~P~SL--K--AklCV~--G~~LlY~yc~e~~I----------pyKk~GKLIVAt~~~Eipr 148 (453)
T KOG2665|consen 91 ---G---HNSGVIHAGIYYKPGSL--K--AKLCVE--GRELLYEYCDEKKI----------PYKKTGKLIVATESEEIPR 148 (453)
T ss_pred ---c---cccceeeeeeeeCCccc--c--hhhhhc--cHHHHHHHhhhcCC----------ChhhcceEEEEeChhhcch
Confidence 0 01335566666554321 1 111111 11223344443211 1334577777777777777
Q ss_pred HHHHHHHHHHcCCCCCC-CCCCC---ccceeee---cccccCCccc--chhhhccccccCCCCeEEEeccEEEEEEecCC
Q psy1043 236 AEAFVRGGEELGYENRD-INGEY---QTGFMVA---QGTVRNGARC--STSKAFLQPVKTRPNLHISLHSHVTKVLIDPK 306 (1306)
Q Consensus 236 ~~~~~~~~~~~G~~~~~-~~~~~---~~g~~~~---~~~~~~g~r~--s~~~~~l~~~~~~~nl~I~~~~~V~~I~~d~~ 306 (1306)
.+.+++...+.|++-.. +.+.. ...++.+ ..+...|.-. +....|-. .-+..+-+|.+|-++.++..+..
T Consensus 149 Ld~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~e-dF~~~gg~i~~n~~l~g~~~n~~ 227 (453)
T KOG2665|consen 149 LDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGE-DFDFMGGRIYTNFRLQGIAQNKE 227 (453)
T ss_pred HHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHH-HHHHhcccccccceeccchhccC
Confidence 88888877777776221 11111 1111111 1111222111 11112222 23455779999999999976554
Q ss_pred CCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHHhCC
Q psy1043 307 NRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSGI 348 (1306)
Q Consensus 307 ~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~SGi 348 (1306)
+.--+-+.+ .++.-.+++.+ .+++++++.|-++-.+||.
T Consensus 228 ~~~~Ypivv-~ngk~ee~r~~--~~vtc~gl~sdr~aa~sgc 266 (453)
T KOG2665|consen 228 ATFSYPIVV-LNGKGEEKRTK--NVVTCAGLQSDRCAALSGC 266 (453)
T ss_pred CCCCCceEE-ecCccceeEEe--EEEEeccccHhHHHHHhCC
Confidence 211112222 34444566663 4555555899999999976
No 281
>PRK06184 hypothetical protein; Provisional
Probab=97.83 E-value=0.00012 Score=90.87 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=32.7
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
+++||||||+|++|+++|..|++ .|++|+|||+.+
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-~Gi~v~viE~~~ 36 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-RGVSFRLIEKAP 36 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence 36999999999999999999999 799999999975
No 282
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.83 E-value=0.00015 Score=87.32 Aligned_cols=35 Identities=34% Similarity=0.472 Sum_probs=32.6
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
...||+|||+|++|+++|..|++ .|++|+|+||.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~-~g~~v~v~Er~~ 37 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALAR-QGIKVKLLEQAA 37 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHh-CCCcEEEEeeCc
Confidence 46899999999999999999999 599999999985
No 283
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.82 E-value=0.00026 Score=85.59 Aligned_cols=35 Identities=26% Similarity=0.557 Sum_probs=32.6
Q ss_pred CCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCC
Q psy1043 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735 (1306)
Q Consensus 700 ~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G 735 (1306)
+..|||+|||+|++|+++|+.|++ .|++|+|||+.
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~-~G~~v~viE~~ 36 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKE-SDLRIAVIEGQ 36 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHh-CCCEEEEEcCC
Confidence 457999999999999999999999 59999999996
No 284
>PRK07588 hypothetical protein; Provisional
Probab=97.82 E-value=0.00022 Score=85.83 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
||+|||+|++|+++|+.|++ .|++|+|+||.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~-~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR-YGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHH-CCCceEEEeCCC
Confidence 79999999999999999999 499999999985
No 285
>PRK07236 hypothetical protein; Provisional
Probab=97.81 E-value=0.00028 Score=84.66 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=32.6
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
...||||||||++|+++|+.|++ .|++|+|+||.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~-~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRR-AGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh-CCCCEEEEecCC
Confidence 46899999999999999999999 599999999985
No 286
>PRK07190 hypothetical protein; Provisional
Probab=97.80 E-value=9.8e-05 Score=90.72 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=32.8
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
..+||||||+|++|+++|..|++ .|.+|+|||+.+
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar-~Gi~V~llEr~~ 38 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQL-CGLNTVIVDKSD 38 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHH-cCCCEEEEeCCC
Confidence 46899999999999999999998 799999999986
No 287
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.80 E-value=0.0004 Score=87.31 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=33.0
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
.++||+|||+|++|+++|+.|++ .|.+|+||||.+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viE~~~ 56 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQ-QGVPVVLLDDDD 56 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCC
Confidence 57999999999999999999999 599999999985
No 288
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.80 E-value=0.00026 Score=84.52 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 703 yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+||+|||+|++|+++|+.|++ .|++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~-~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ-KGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc-CCCeEEEecCCC
Confidence 799999999999999999999 599999999975
No 289
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.79 E-value=0.00011 Score=90.01 Aligned_cols=62 Identities=18% Similarity=0.343 Sum_probs=45.0
Q ss_pred hhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCee-eeEEEEeCcEEEEcCCCcchHHHh
Q psy1043 906 PIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRK-DPVLVRARREVILSAGAIGSPQVY 970 (1306)
Q Consensus 906 ~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~-~~~~v~A~k~VVLAAGai~sp~LL 970 (1306)
..+++.|++|+++++|++|..++..++..++++|++.+|.. . .+.++. ||+|+......+||
T Consensus 227 ~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~--~~~aD~-VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 227 EYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKK--VIKADA-YVAACDVPGIKRLL 289 (474)
T ss_pred HHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcce--EEECCE-EEECCChHHHHhhC
Confidence 34556899999999999999864211111488888765532 3 578887 99999998877776
No 290
>PRK07208 hypothetical protein; Provisional
Probab=97.78 E-value=0.00018 Score=89.07 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=34.6
Q ss_pred CCCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCCCC
Q psy1043 77 YPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDET 116 (1306)
Q Consensus 77 ~~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~~ 116 (1306)
.+..||||||||.+|+++|++|++ .|++|+|||+.+...
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~-~g~~v~v~E~~~~~G 40 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLK-RGYPVTVLEADPVVG 40 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCCC
Confidence 357899999999999999999999 699999999976543
No 291
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.78 E-value=5.6e-05 Score=90.09 Aligned_cols=58 Identities=22% Similarity=0.195 Sum_probs=43.3
Q ss_pred cccccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHH
Q psy1043 281 LQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQI 342 (1306)
Q Consensus 281 l~~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~L 342 (1306)
|....++.|++|++++.|+++..+++ ++++|. ..+++...+.++. ||||+|.+.+.-|
T Consensus 265 L~~~l~~~Gv~I~~g~~V~~v~~~~~--~V~~v~-~~~g~~~~i~AD~-VVLAtGrf~s~GL 322 (422)
T PRK05329 265 LRRAFERLGGRIMPGDEVLGAEFEGG--RVTAVW-TRNHGDIPLRARH-FVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCC--EEEEEE-eeCCceEEEECCE-EEEeCCCcccCce
Confidence 33445567899999999999988765 676665 3455566788976 9999998765554
No 292
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.78 E-value=0.00013 Score=84.27 Aligned_cols=33 Identities=33% Similarity=0.583 Sum_probs=31.2
Q ss_pred ccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 703 yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
|||||||+|++|+++|..|++ .|.+|+|+|+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAAR-ANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHH-CCCCEEEEeccC
Confidence 799999999999999999999 499999999984
No 293
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.77 E-value=0.00013 Score=87.68 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=32.2
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
.+||+|||+|++|+++|..|++ .|++|+|||+.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~-~G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL-AGIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh-cCCCEEEEEcCC
Confidence 5899999999999999999999 799999999986
No 294
>PLN02507 glutathione reductase
Probab=97.77 E-value=7.5e-05 Score=92.08 Aligned_cols=33 Identities=33% Similarity=0.429 Sum_probs=31.2
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~ 734 (1306)
.+||+||||+|++|..+|.+|++ .|++|+|+|+
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~-~G~~V~liE~ 56 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSAN-FGAKVGICEL 56 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence 47999999999999999999999 4999999997
No 295
>KOG4254|consensus
Probab=97.75 E-value=8.3e-05 Score=84.45 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=45.7
Q ss_pred cccccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHH
Q psy1043 281 LQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILM 344 (1306)
Q Consensus 281 l~~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl 344 (1306)
+.+.+++.|.+|++++.|.+|+.|++ +|.||.+.++. ++++ |.||-.|+-+.|=.=|+
T Consensus 270 ia~~~~~~GaeI~tka~Vq~Illd~g--ka~GV~L~dG~---ev~s-k~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 270 IAEGAKRAGAEIFTKATVQSILLDSG--KAVGVRLADGT---EVRS-KIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHHHhccceeeehhhhhheeccCC--eEEEEEecCCc---EEEe-eeeecCCchHHHHHHhC
Confidence 44567889999999999999999985 99999987653 4666 55888888777764444
No 296
>KOG2311|consensus
Probab=97.74 E-value=4.5e-05 Score=86.68 Aligned_cols=58 Identities=29% Similarity=0.405 Sum_probs=44.1
Q ss_pred cCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHhcC
Q psy1043 909 ARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYLI 972 (1306)
Q Consensus 909 ~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LLl~ 972 (1306)
..+|++|+.++ |..|++.+.+++..++.||.+.||. .|.|+. |||.+|.|-+.+|-.-
T Consensus 136 st~nL~ire~~-V~dliv~~~~~~~~~~~gV~l~dgt----~v~a~~-VilTTGTFL~~~I~iG 193 (679)
T KOG2311|consen 136 STPNLEIREGA-VADLIVEDPDDGHCVVSGVVLVDGT----VVYAES-VILTTGTFLRGQINIG 193 (679)
T ss_pred cCCcchhhhhh-hhheeeccCCCCceEEEEEEEecCc----Eeccce-EEEeeccceeeEEeec
Confidence 45689998765 6666665433344679999999997 789987 9999999987777553
No 297
>PRK06753 hypothetical protein; Provisional
Probab=97.74 E-value=0.00032 Score=83.84 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
||||||+|++|+++|+.|++ .|++|+|+||.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~-~g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE-QGHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCcEEEEecCC
Confidence 79999999999999999999 599999999986
No 298
>KOG2853|consensus
Probab=97.73 E-value=0.00046 Score=75.55 Aligned_cols=40 Identities=30% Similarity=0.495 Sum_probs=34.4
Q ss_pred CCCCCCccEEEECCChHHHHHHHHHHc---CCCCEEEEECCCC
Q psy1043 697 EEMYPEYDFVVVGGGSAGAVVARRLSE---QKNWKVLLLEAGG 736 (1306)
Q Consensus 697 ~~~~~~yDvIVIGsG~aG~~aA~~Lae---~~G~~VlVLE~G~ 736 (1306)
+.....+||+|||+|..|+++|+-|.+ +.|.+|+|+|+..
T Consensus 81 ~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd 123 (509)
T KOG2853|consen 81 EVFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD 123 (509)
T ss_pred cccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence 344568999999999999999999865 4589999999986
No 299
>PRK06847 hypothetical protein; Provisional
Probab=97.73 E-value=0.00026 Score=84.58 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=32.5
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
+..||||||+|++|+++|..|++ .|++|+|+|+.+
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~-~g~~v~v~E~~~ 37 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRR-AGIAVDLVEIDP 37 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHh-CCCCEEEEecCC
Confidence 46799999999999999999998 799999999875
No 300
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.73 E-value=4e-05 Score=90.10 Aligned_cols=55 Identities=22% Similarity=0.367 Sum_probs=43.9
Q ss_pred hhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHH
Q psy1043 903 YLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQV 969 (1306)
Q Consensus 903 ~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~L 969 (1306)
.|...+.+.|++|+.+++|+.|..++ +++++|.+.+| .++|++ ||+|+|++ ++.|
T Consensus 142 ~l~~~~~~~g~~~~~~~~v~~i~~~~-----~~~~~v~~~~g-----~~~a~~-vV~a~G~~-~~~l 196 (337)
T TIGR02352 142 ALEKALEKLGVEIIEHTEVQHIEIRG-----EKVTAIVTPSG-----DVQADQ-VVLAAGAW-AGEL 196 (337)
T ss_pred HHHHHHHHcCCEEEccceEEEEEeeC-----CEEEEEEcCCC-----EEECCE-EEEcCChh-hhhc
Confidence 34456677899999999999999876 67888887666 678987 99999986 4444
No 301
>PLN02487 zeta-carotene desaturase
Probab=97.73 E-value=0.00036 Score=86.43 Aligned_cols=62 Identities=19% Similarity=0.325 Sum_probs=44.5
Q ss_pred hhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEe-CCeeeeEEEEeCcEEEEcCCCcchHHHh
Q psy1043 906 PIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK-KGRKDPVLVRARREVILSAGAIGSPQVY 970 (1306)
Q Consensus 906 ~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~-~G~~~~~~v~A~k~VVLAAGai~sp~LL 970 (1306)
..+++.|++|++++.|++|+.+.+.++..+++||++. ++... .+.++. ||+|++.....+||
T Consensus 303 ~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~--~~~aD~-VV~A~p~~~~~~Ll 365 (569)
T PLN02487 303 KYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKE--IVKADA-YVAACDVPGIKRLL 365 (569)
T ss_pred HHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCce--EEECCE-EEECCCHHHHHHhC
Confidence 4567889999999999999998522122368999973 33333 577876 99999987665554
No 302
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.72 E-value=0.00014 Score=87.27 Aligned_cols=33 Identities=36% Similarity=0.526 Sum_probs=31.6
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
.+||||||||++|+++|..|++ .|++|+|||+-
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-AGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-CCCcEEEEccC
Confidence 5899999999999999999999 79999999997
No 303
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.71 E-value=0.00029 Score=88.33 Aligned_cols=35 Identities=34% Similarity=0.530 Sum_probs=33.1
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
.++||||||+|++|+++|..|++ .|++|+|||+.+
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~-~G~~v~v~Er~~ 43 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQ-YGVRVLVLERWP 43 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 57999999999999999999999 799999999985
No 304
>PRK07045 putative monooxygenase; Reviewed
Probab=97.71 E-value=0.00033 Score=84.16 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=33.5
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~ 114 (1306)
.+|||+|||+|++|+++|..|++ .|++|+|+|+.+.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~-~G~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGA-RGHSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHh-cCCcEEEEeCCCc
Confidence 46999999999999999999999 7999999999863
No 305
>PRK11445 putative oxidoreductase; Provisional
Probab=97.70 E-value=0.00034 Score=82.65 Aligned_cols=32 Identities=28% Similarity=0.604 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
|||+|||+|++|+++|..|++ . ++|+|||+.+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~-~-~~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAG-K-MKVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhc-c-CCEEEEECCC
Confidence 899999999999999999998 6 9999999885
No 306
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.68 E-value=0.0002 Score=89.14 Aligned_cols=34 Identities=35% Similarity=0.530 Sum_probs=31.1
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G 735 (1306)
..|||+|||||++|+++|.+|++ .|++|+|+|+.
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~-~G~~v~li~~~ 243 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAAR-KGIRTGIVAER 243 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecC
Confidence 46999999999999999999999 59999999763
No 307
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.68 E-value=4.3e-05 Score=66.14 Aligned_cols=30 Identities=23% Similarity=0.522 Sum_probs=27.3
Q ss_pred EECCChHHHHHHHHHHcCCCCEEEEECCCCC
Q psy1043 707 VVGGGSAGAVVARRLSEQKNWKVLLLEAGGE 737 (1306)
Q Consensus 707 VIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 737 (1306)
|||||++|+++|++|++. |++|+|+|+.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-TSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-CCcEEEEecCcc
Confidence 899999999999999995 999999999974
No 308
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.67 E-value=0.00028 Score=84.00 Aligned_cols=32 Identities=41% Similarity=0.710 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHH--HcCCCCEEEEECCCC
Q psy1043 704 DFVVVGGGSAGAVVARRL--SEQKNWKVLLLEAGG 736 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~L--ae~~G~~VlVLE~G~ 736 (1306)
||||||+|++|+++|++| ++ .|.+|+|||+.+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~-~g~~Vllid~~~ 34 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADAR-PGLSVLLIDPKP 34 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcC-CCCEEEEEcCCc
Confidence 899999999999999999 77 599999999986
No 309
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.65 E-value=0.00033 Score=80.50 Aligned_cols=56 Identities=23% Similarity=0.295 Sum_probs=41.3
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHH
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILML 345 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~ 345 (1306)
.....|++|+.+++|+.|++.++ .+.+|...++ .++.++. ||||-|--..-.+-++
T Consensus 182 ~l~~~G~ei~f~t~VeDi~~~~~--~~~~v~~~~g---~~i~~~~-vvlA~Grsg~dw~~~l 237 (486)
T COG2509 182 YLESLGGEIRFNTEVEDIEIEDN--EVLGVKLTKG---EEIEADY-VVLAPGRSGRDWFEML 237 (486)
T ss_pred HHHhcCcEEEeeeEEEEEEecCC--ceEEEEccCC---cEEecCE-EEEccCcchHHHHHHH
Confidence 34567899999999999999877 6777776543 3688876 9999996554444333
No 310
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.61 E-value=8.4e-05 Score=86.90 Aligned_cols=53 Identities=23% Similarity=0.430 Sum_probs=38.6
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHH
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQI 342 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~L 342 (1306)
+.+.+|++|+.++ |+.|+++++. +|.||....+. .+.|+. |||++|+|-.-++
T Consensus 110 le~~~NL~l~q~~-v~dli~e~~~-~v~GV~t~~G~---~~~a~a-VVlTTGTFL~G~I 162 (621)
T COG0445 110 LENQPNLHLLQGE-VEDLIVEEGQ-RVVGVVTADGP---EFHAKA-VVLTTGTFLRGKI 162 (621)
T ss_pred HhcCCCceehHhh-hHHHhhcCCC-eEEEEEeCCCC---eeecCE-EEEeecccccceE
Confidence 3467899999765 8888886653 79999875542 578865 9999999844433
No 311
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.61 E-value=0.00057 Score=81.57 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
+||||||+|++|+++|..|++ .|++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~-~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ-KGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc-CCCeEEEecCCC
Confidence 799999999999999999999 799999999875
No 312
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.60 E-value=0.00031 Score=84.31 Aligned_cols=33 Identities=36% Similarity=0.556 Sum_probs=31.3
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCC
Q psy1043 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114 (1306)
Q Consensus 81 DvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~ 114 (1306)
||||||||++|+++|..|++ .|++|+|+|+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~-~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR-SGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc-CCCEEEEEeCCCc
Confidence 89999999999999999999 7999999999964
No 313
>KOG2665|consensus
Probab=97.59 E-value=0.00021 Score=77.32 Aligned_cols=207 Identities=20% Similarity=0.185 Sum_probs=110.7
Q ss_pred CCccEEEECCChHHHHHHHHHHc-CCCCEEEEECCCCCCCCCCCCCCCCccccCCCCCCCCccccCccccccCCCCeeec
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSE-QKNWKVLLLEAGGEESPLSDIPCTYPALQTSPLDWQYKTEPNDRACLGLNGRRSNW 779 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae-~~G~~VlVLE~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1306)
..||.||||+|+.|++.|.+|.- .++.+|+|||+....... .+..
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~h-----------qSgh----------------------- 92 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVH-----------QSGH----------------------- 92 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhcee-----------eccc-----------------------
Confidence 47999999999999999999974 469999999998632110 0100
Q ss_pred CCcceecchhHhccceeecCChhhHHHHHHcCCCCCCcccchHHHHHhhhccCCCCCCCCCCCCCCCcccccCCCCChHH
Q psy1043 780 PRGKVIGGSSVLNAMLYVRGNRRDYDAWEAAGNEGWSYRDTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFRYYSPVT 859 (1306)
Q Consensus 780 ~~g~~lGG~S~~~~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 859 (1306)
-+..+.+++|..+..---. .=..+ .+-+..|+++-+ . .+...|-+-+...+...|..
T Consensus 93 -------NSgViHaGIYY~P~SLKAk----lCV~G--~~LlY~yc~e~~-I---------pyKk~GKLIVAt~~~EiprL 149 (453)
T KOG2665|consen 93 -------NSGVIHAGIYYKPGSLKAK----LCVEG--RELLYEYCDEKK-I---------PYKKTGKLIVATESEEIPRL 149 (453)
T ss_pred -------ccceeeeeeeeCCcccchh----hhhcc--HHHHHHHhhhcC-C---------ChhhcceEEEEeChhhcchH
Confidence 0223445555543321100 00001 112223333221 1 23345666676666777888
Q ss_pred HHHHHHHHHcCCCCC-CCCCCCcc---ceeec--cCCcC-CCc--ccchhHhhhhhhhcCCCcEEEecceEEEEEecCCC
Q psy1043 860 EAFVESAGELGYEVG-DINGERQT---GFTRA--HGTLK-NGL--RCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGP 930 (1306)
Q Consensus 860 ~~~~~~~~~~G~~~~-~~~~~~~~---g~~~~--~~~~~-~g~--~~~~~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~ 930 (1306)
+++.+.....|++-. .+.+.... .+..+ ...++ .|. ..+....+- .-.+..|..+.+|-++.++..+++.
T Consensus 150 d~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~-edF~~~gg~i~~n~~l~g~~~n~~~ 228 (453)
T KOG2665|consen 150 DALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFG-EDFDFMGGRIYTNFRLQGIAQNKEA 228 (453)
T ss_pred HHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHH-HHHHHhcccccccceeccchhccCC
Confidence 888887777776541 11121111 11111 11112 221 111222222 2355678899999999999776521
Q ss_pred CCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHhcC
Q psy1043 931 DGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYLI 972 (1306)
Q Consensus 931 ~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LLl~ 972 (1306)
---.-+++.+|+.. +++.+ .+++++++.+-++--+
T Consensus 229 ---~~~Ypivv~ngk~e--e~r~~--~~vtc~gl~sdr~aa~ 263 (453)
T KOG2665|consen 229 ---TFSYPIVVLNGKGE--EKRTK--NVVTCAGLQSDRCAAL 263 (453)
T ss_pred ---CCCCceEEecCccc--eeEEe--EEEEeccccHhHHHHH
Confidence 01223345566555 77785 4555555777777655
No 314
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.58 E-value=0.00032 Score=84.16 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=32.2
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
.+||+|||+|++|+++|..|++ .|++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHK-AGIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHH-CCCCEEEEECCC
Confidence 4899999999999999999999 799999999986
No 315
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.58 E-value=0.00036 Score=86.71 Aligned_cols=33 Identities=36% Similarity=0.600 Sum_probs=30.6
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~ 734 (1306)
..|||+|||+|++|+++|.+|++ .|++|+|+|.
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~-~G~~v~li~~ 243 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAAR-KGLRTAMVAE 243 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Confidence 46999999999999999999999 5999999974
No 316
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.57 E-value=9.8e-05 Score=90.91 Aligned_cols=68 Identities=18% Similarity=0.339 Sum_probs=43.4
Q ss_pred chhHhhhhhhhcCCCc--EEEecceEEEEEecCCCCCCceEEEEEE-eCCeeeeEEEEeCcEEEEcCCCcchHHH
Q psy1043 898 STAKAYLRPIIARPNL--HVSLHSHAYRVHFEPGPDGQMRATGVVV-KKGRKDPVLVRARREVILSAGAIGSPQV 969 (1306)
Q Consensus 898 ~~~~~~L~~~~~~~g~--~i~~~~~V~~I~~~~~~~~~~rv~GV~~-~~G~~~~~~v~A~k~VVLAAGai~sp~L 969 (1306)
.....||...+++.++ .|.+||+|++|...++....++ .-|.+ .+|+.. +-.-+. ||+|+|.+..|.+
T Consensus 84 ~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~-W~V~~~~~g~~~--~~~fD~-VvvatG~~~~P~~ 154 (531)
T PF00743_consen 84 SEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGK-WEVTTENDGKEE--TEEFDA-VVVATGHFSKPNI 154 (531)
T ss_dssp HHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETE-EEEEETTTTEEE--EEEECE-EEEEE-SSSCESB
T ss_pred HHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCce-EEEEeecCCeEE--EEEeCe-EEEcCCCcCCCCC
Confidence 3455677777777776 7999999999988653211233 33444 345443 333455 9999999988875
No 317
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.57 E-value=9.8e-05 Score=91.91 Aligned_cols=56 Identities=21% Similarity=0.188 Sum_probs=44.7
Q ss_pred hhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEe---CCeeeeEEEEeCcEEEEcCCCcchHHHh
Q psy1043 906 PIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK---KGRKDPVLVRARREVILSAGAIGSPQVY 970 (1306)
Q Consensus 906 ~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~---~G~~~~~~v~A~k~VVLAAGai~sp~LL 970 (1306)
..+.+.|++|+++++|++|..++ +++++|++. +|+.. .|+|+. ||+|||++ +..|+
T Consensus 136 ~~A~~~Ga~i~~~t~V~~i~~~~-----~~v~gv~v~~~~~g~~~--~i~a~~-VVnAaG~w-a~~l~ 194 (516)
T TIGR03377 136 LDAQEHGARIFTYTKVTGLIREG-----GRVTGVKVEDHKTGEEE--RIEAQV-VINAAGIW-AGRIA 194 (516)
T ss_pred HHHHHcCCEEEcCcEEEEEEEEC-----CEEEEEEEEEcCCCcEE--EEEcCE-EEECCCcc-hHHHH
Confidence 46678899999999999999876 688888864 35444 789987 99999987 45554
No 318
>PRK06834 hypothetical protein; Provisional
Probab=97.55 E-value=0.00051 Score=84.54 Aligned_cols=34 Identities=21% Similarity=0.410 Sum_probs=32.3
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
++||||||+|++|+++|..|++ .|++|+|||+.+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~-~G~~v~vlEr~~ 36 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELAL-AGVDVAIVERRP 36 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 5999999999999999999999 799999999885
No 319
>PRK05868 hypothetical protein; Validated
Probab=97.54 E-value=0.00074 Score=80.38 Aligned_cols=32 Identities=28% Similarity=0.396 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
||+|||+|++|+++|+.|++ .|++|+|+|+.+
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~-~G~~v~viE~~~ 34 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGR-HGYSVTMVERHP 34 (372)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCC
Confidence 89999999999999999999 599999999986
No 320
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00019 Score=78.49 Aligned_cols=58 Identities=14% Similarity=0.059 Sum_probs=48.3
Q ss_pred hhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHH
Q psy1043 904 LRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQV 969 (1306)
Q Consensus 904 L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~L 969 (1306)
|....++.|+-++.+-+|.+..+.+ ++|+.|.+++.... -++|+. +|||+|+|-|.-|
T Consensus 264 L~~~f~~~Gg~~m~Gd~V~~a~~~~-----~~v~~i~trn~~di--P~~a~~-~VLAsGsffskGL 321 (421)
T COG3075 264 LQRQFEQLGGLWMPGDEVKKATCKG-----GRVTEIYTRNHADI--PLRADF-YVLASGSFFSKGL 321 (421)
T ss_pred HHHHHHHcCceEecCCceeeeeeeC-----CeEEEEEecccccC--CCChhH-eeeeccccccccc
Confidence 4456678899999999999999988 89999999988766 788987 9999999754433
No 321
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.52 E-value=8.5e-05 Score=64.33 Aligned_cols=31 Identities=23% Similarity=0.491 Sum_probs=27.8
Q ss_pred EECCChhHHHHHHHHhCCCCCEEEEEcCCCCC
Q psy1043 84 VVGAGSAGAVVANRLSEIENWKILLLEAGGDE 115 (1306)
Q Consensus 84 IVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~ 115 (1306)
|||||++|+++|++|++ .|++|+|+|+.+..
T Consensus 1 IiGaG~sGl~aA~~L~~-~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK-AGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHH-TTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHH-CCCcEEEEecCccc
Confidence 89999999999999999 69999999999754
No 322
>PLN02612 phytoene desaturase
Probab=97.52 E-value=0.00062 Score=85.30 Aligned_cols=36 Identities=33% Similarity=0.446 Sum_probs=32.9
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEE 738 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 738 (1306)
..||+|||+|.+|+++|++|++ .|++|+|+|+....
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~-~g~~~~~~e~~~~~ 128 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLAD-AGHKPILLEARDVL 128 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-cCCeEEEEecCCCC
Confidence 4789999999999999999999 59999999998654
No 323
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.51 E-value=0.00066 Score=85.14 Aligned_cols=54 Identities=9% Similarity=0.143 Sum_probs=43.8
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
.+.+.|++|+.++.|++|+.++++ +|+||.+.+ ++....+.|+ .||||+|++..
T Consensus 135 ~~~~~gi~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 190 (570)
T PRK05675 135 GNLKNGTTFLNEWYAVDLVKNQDG-AVVGVIAICIETGETVYIKSK-ATVLATGGAGR 190 (570)
T ss_pred HHhccCCEEEECcEEEEEEEcCCC-eEEEEEEEEcCCCcEEEEecC-eEEECCCCccc
Confidence 345679999999999999986443 999998853 5666788886 59999999875
No 324
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.51 E-value=0.00027 Score=88.01 Aligned_cols=61 Identities=20% Similarity=0.204 Sum_probs=48.5
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCcHHHHHHhCC
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNSPQILMLSGI 348 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~Sp~LLl~SGi 348 (1306)
.+.+.|++|+++++|++|..+++ ++.||++.+ +++...|.|+. ||+|||+ ++..|+...|+
T Consensus 137 ~A~~~Ga~i~~~t~V~~i~~~~~--~v~gv~v~~~~~g~~~~i~a~~-VVnAaG~-wa~~l~~~~g~ 199 (516)
T TIGR03377 137 DAQEHGARIFTYTKVTGLIREGG--RVTGVKVEDHKTGEEERIEAQV-VINAAGI-WAGRIAEYAGL 199 (516)
T ss_pred HHHHcCCEEEcCcEEEEEEEECC--EEEEEEEEEcCCCcEEEEEcCE-EEECCCc-chHHHHHhcCC
Confidence 44567899999999999998765 888998864 45567899976 9999996 68888766654
No 325
>PRK07538 hypothetical protein; Provisional
Probab=97.50 E-value=0.00078 Score=81.59 Aligned_cols=32 Identities=28% Similarity=0.555 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
||+|||+|++|+++|+.|++ .|++|+|+||.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ-RGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCcEEEEEcCC
Confidence 89999999999999999999 599999999985
No 326
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.50 E-value=0.0014 Score=82.42 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=33.5
Q ss_pred CCCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 77 YPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 77 ~~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
..++||+|||+|++|+++|..|++ .|++|+|||+.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viE~~~ 56 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQ-QGVPVVLLDDDD 56 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCC
Confidence 367999999999999999999998 799999999885
No 327
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.47 E-value=0.00025 Score=86.25 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=41.0
Q ss_pred chhHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCC
Q psy1043 898 STAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGA 963 (1306)
Q Consensus 898 ~~~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGa 963 (1306)
.....+|...+.+.|++++.++ |+++.++++ +.+++|++.+|+ +|+|+- ||=|+|-
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~----g~i~~v~~~~g~----~i~ad~-~IDASG~ 209 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDED----GRITAVRLDDGR----TIEADF-FIDASGR 209 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TT----SEEEEEEETTSE----EEEESE-EEE-SGG
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCC----CCEEEEEECCCC----EEEEeE-EEECCCc
Confidence 4566678777888899999874 888888752 789999998886 788975 7777773
No 328
>PRK06996 hypothetical protein; Provisional
Probab=97.46 E-value=0.001 Score=80.11 Aligned_cols=36 Identities=28% Similarity=0.613 Sum_probs=32.1
Q ss_pred CCCccEEEECCChHHHHHHHHHHcCCC----CEEEEECCCC
Q psy1043 700 YPEYDFVVVGGGSAGAVVARRLSEQKN----WKVLLLEAGG 736 (1306)
Q Consensus 700 ~~~yDvIVIGsG~aG~~aA~~Lae~~G----~~VlVLE~G~ 736 (1306)
..+|||+|||+|++|+++|+.|++. | ++|+|||+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~-g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARR-SATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCcCCceEEEecCCC
Confidence 3579999999999999999999984 6 5899999975
No 329
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00053 Score=82.99 Aligned_cols=36 Identities=22% Similarity=0.394 Sum_probs=33.2
Q ss_pred CCCccEEEECCChhHHHHHHHHhCCCCCE-EEEEcCCC
Q psy1043 77 YPEYDFIVVGAGSAGAVVANRLSEIENWK-ILLLEAGG 113 (1306)
Q Consensus 77 ~~~yDvIIVGsG~aG~~~A~rLae~~G~~-VLvLE~G~ 113 (1306)
.+.+||+|||+|.+|+.+|++|.+ .|.. ++||||..
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~-~g~~~~~i~Ek~~ 42 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQ-AGVPDFVIFEKRD 42 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHH-cCCCcEEEEEccC
Confidence 367999999999999999999999 7888 99999986
No 330
>PTZ00058 glutathione reductase; Provisional
Probab=97.45 E-value=0.00018 Score=89.29 Aligned_cols=34 Identities=44% Similarity=0.716 Sum_probs=32.2
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G 735 (1306)
.+||+||||+|++|..+|.+|++ .|++|+|||++
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~-~G~~ValIEk~ 80 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAAR-NKAKVALVEKD 80 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHH-cCCeEEEEecc
Confidence 47999999999999999999999 59999999996
No 331
>PRK07538 hypothetical protein; Provisional
Probab=97.44 E-value=0.00084 Score=81.33 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 81 DvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
||||||+|++|+++|..|++ .|++|+|+|+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ-RGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCcEEEEEcCC
Confidence 89999999999999999999 799999999975
No 332
>PRK06370 mercuric reductase; Validated
Probab=97.43 E-value=0.00011 Score=90.17 Aligned_cols=37 Identities=38% Similarity=0.531 Sum_probs=33.8
Q ss_pred CCCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 699 ~~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
|+.+|||||||+|++|+.+|.+|++ .|++|+|+|++.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAG-LGMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHh-CCCeEEEEecCc
Confidence 4567999999999999999999999 599999999973
No 333
>KOG2960|consensus
Probab=97.43 E-value=0.00011 Score=74.80 Aligned_cols=35 Identities=37% Similarity=0.554 Sum_probs=31.8
Q ss_pred CccEEEECCChHHHHHHHHHHc-CCCCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSE-QKNWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae-~~G~~VlVLE~G~ 736 (1306)
+.||||||+|.+|+++||..++ ++..+|.+||..-
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV 111 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV 111 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence 6799999999999999999994 6789999999973
No 334
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.41 E-value=0.00013 Score=89.58 Aligned_cols=34 Identities=35% Similarity=0.566 Sum_probs=31.7
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G 735 (1306)
.+||+||||+|++|+++|.+|++ .|++|+|+|+.
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~-~G~~V~liE~~ 35 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQ-LGLKVACVEGR 35 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence 46999999999999999999999 59999999974
No 335
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.40 E-value=0.00026 Score=82.50 Aligned_cols=64 Identities=25% Similarity=0.387 Sum_probs=40.8
Q ss_pred hhHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEe--CCeeeeEEEEeCcEEEEcCCCcchHHH
Q psy1043 899 TAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK--KGRKDPVLVRARREVILSAGAIGSPQV 969 (1306)
Q Consensus 899 ~~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~--~G~~~~~~v~A~k~VVLAAGai~sp~L 969 (1306)
....|+..++++..-.+..+++|++|..+.+.+ .....|.+. +|... .+.|+. |||++| .+|.+
T Consensus 96 ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~--~~~~~V~~~~~~g~~~--~~~ar~-vVla~G--~~P~i 161 (341)
T PF13434_consen 96 EFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGD--EDLFRVTTRDSDGDGE--TYRARN-VVLATG--GQPRI 161 (341)
T ss_dssp HHHHHHHHHHCCGTTTEEESEEEEEEEEEEETT--EEEEEEEEEETTS-EE--EEEESE-EEE------EE--
T ss_pred HHHHHHHHHHHhCCCceEECCEEEEEEEecCCC--ccEEEEEEeecCCCee--EEEeCe-EEECcC--CCCCC
Confidence 355678778888776699999999999886321 135556653 46555 889987 999999 44543
No 336
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.37 E-value=0.0014 Score=79.13 Aligned_cols=32 Identities=28% Similarity=0.566 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+|+|||||++|+++|+.|++ .|++|+|+||.+
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~-~G~~V~i~E~~~ 35 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAA-RGWAVTIIEKAQ 35 (400)
T ss_pred cEEEECCCHHHHHHHHHHHh-CCCcEEEEecCC
Confidence 69999999999999999999 599999999975
No 337
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.35 E-value=0.0025 Score=74.06 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=34.5
Q ss_pred CCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCCCC
Q psy1043 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEE 738 (1306)
Q Consensus 700 ~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 738 (1306)
+..+||||||+|.+||++|++|.+ .|++|+|||+.+..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~k-aG~~v~ilEar~r~ 42 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKK-AGYQVQILEARDRV 42 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhh-cCcEEEEEeccCCc
Confidence 357999999999999999999999 59999999998754
No 338
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.35 E-value=0.00018 Score=87.98 Aligned_cols=35 Identities=34% Similarity=0.680 Sum_probs=32.8
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
++|||||||||++|+.+|.+|++ .|++|+|+|+++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~-~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAK-AGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHH-CCCeEEEEcCCC
Confidence 46999999999999999999999 599999999975
No 339
>KOG2852|consensus
Probab=97.34 E-value=0.00015 Score=77.78 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=41.9
Q ss_pred HhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeC--CeeeeEEEEeCcEEEEcCCCcchHHHhcC
Q psy1043 901 KAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKK--GRKDPVLVRARREVILSAGAIGSPQVYLI 972 (1306)
Q Consensus 901 ~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~--G~~~~~~v~A~k~VVLAAGai~sp~LLl~ 972 (1306)
...+..+.++.|++++.+ .|.++..+. .|+.+|.... +..+ ...+.+ +|||+|.| |++||..
T Consensus 151 ~~i~sea~k~~~V~lv~G-kv~ev~dEk-----~r~n~v~~ae~~~ti~--~~d~~~-ivvsaGPW-Tskllp~ 214 (380)
T KOG2852|consen 151 HFILSEAEKRGGVKLVFG-KVKEVSDEK-----HRINSVPKAEAEDTII--KADVHK-IVVSAGPW-TSKLLPF 214 (380)
T ss_pred HHHHHHHHhhcCeEEEEe-eeEEeeccc-----ccccccchhhhcCceE--EeeeeE-EEEecCCC-chhhccc
Confidence 344555677888999987 467776444 6888887432 2222 566766 99999997 6777754
No 340
>PTZ00058 glutathione reductase; Provisional
Probab=97.34 E-value=0.00033 Score=86.88 Aligned_cols=34 Identities=38% Similarity=0.620 Sum_probs=32.2
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
.+||+||||+|++|..+|.++++ .|++|+|+|++
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~-~G~~ValIEk~ 80 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAAR-NKAKVALVEKD 80 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHH-cCCeEEEEecc
Confidence 57999999999999999999999 79999999976
No 341
>PRK06116 glutathione reductase; Validated
Probab=97.33 E-value=0.00019 Score=88.01 Aligned_cols=36 Identities=42% Similarity=0.628 Sum_probs=33.0
Q ss_pred CCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 700 ~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+.+|||||||+|++|+.+|.+|++ .|++|+|+|++.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~-~G~~V~liE~~~ 37 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAM-YGAKVALIEAKR 37 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccc
Confidence 357999999999999999999999 599999999974
No 342
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.32 E-value=0.00015 Score=87.01 Aligned_cols=32 Identities=38% Similarity=0.674 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
|||||||+|++|+++|+.|++ .|++|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~-~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR-AGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh-CCCcEEEEECC
Confidence 899999999999999999999 79999999987
No 343
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.32 E-value=0.00019 Score=88.33 Aligned_cols=35 Identities=34% Similarity=0.494 Sum_probs=32.4
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
.+||+||||+|++|+++|.+|++ .|++|+|+|++.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~-~G~~V~lie~~~ 37 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQ-LGLKTAVVEKKY 37 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEecCC
Confidence 46999999999999999999999 599999999963
No 344
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.31 E-value=0.001 Score=81.59 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
|+||||+|++|+.+|..|++ .|.+|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~-~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQ-LGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 79999999999999999999 599999999974
No 345
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.31 E-value=0.00018 Score=87.79 Aligned_cols=34 Identities=44% Similarity=0.718 Sum_probs=32.0
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
++||+||||+|++|..+|.+|++ .|++|+|+|++
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~~ 34 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAE-HGAKALLVEAK 34 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH-CCCcEEEeccc
Confidence 36999999999999999999999 79999999986
No 346
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.31 E-value=0.00017 Score=87.54 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=32.8
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
..|||||||+|++|+++|..||+ .|++|+|||+..
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~-~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAK-GGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh-CCCcEEEEecCC
Confidence 57999999999999999999999 799999999874
No 347
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.30 E-value=0.00037 Score=81.90 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=38.6
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHH
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQI 342 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~L 342 (1306)
.+...|++|+.+++|+.|..+++ ++++|... ++ +++|++ ||+|+|+ +++.|
T Consensus 146 ~~~~~g~~~~~~~~v~~i~~~~~--~~~~v~~~-~g---~~~a~~-vV~a~G~-~~~~l 196 (337)
T TIGR02352 146 ALEKLGVEIIEHTEVQHIEIRGE--KVTAIVTP-SG---DVQADQ-VVLAAGA-WAGEL 196 (337)
T ss_pred HHHHcCCEEEccceEEEEEeeCC--EEEEEEcC-CC---EEECCE-EEEcCCh-hhhhc
Confidence 45567899999999999998655 77787642 22 588977 9999997 45554
No 348
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.30 E-value=0.00019 Score=78.56 Aligned_cols=35 Identities=31% Similarity=0.636 Sum_probs=32.1
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~ 114 (1306)
.||+||||||.+|+++|..|++ .|.+||||||-+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~-~gk~VLIvekR~H 35 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQ-LGKRVLIVEKRNH 35 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHH-cCCEEEEEecccc
Confidence 3899999999999999998888 7999999999765
No 349
>KOG1399|consensus
Probab=97.30 E-value=0.00096 Score=79.67 Aligned_cols=35 Identities=31% Similarity=0.545 Sum_probs=32.3
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE 737 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 737 (1306)
.-+|+|||||++||++|..|.+ .|+.|+|+||.+.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~-~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLR-EGHEVVVFERTDD 40 (448)
T ss_pred CCceEEECcchHHHHHHHHHHH-CCCCceEEEecCC
Confidence 4689999999999999999999 4999999999973
No 350
>PRK09897 hypothetical protein; Provisional
Probab=97.26 E-value=0.0032 Score=77.38 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHcC-CCCEEEEECCCC
Q psy1043 703 YDFVVVGGGSAGAVVARRLSEQ-KNWKVLLLEAGG 736 (1306)
Q Consensus 703 yDvIVIGsG~aG~~aA~~Lae~-~G~~VlVLE~G~ 736 (1306)
.+|+|||+|++|+++|.+|++. ...+|+|+|++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 4799999999999999999873 245899999975
No 351
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.26 E-value=0.00024 Score=81.66 Aligned_cols=34 Identities=50% Similarity=0.776 Sum_probs=32.1
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCC
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~ 114 (1306)
|||||||+|++|+++|..|++ .|.+|+|||+...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~-~g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD-KGLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence 799999999999999999998 7999999999863
No 352
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.25 E-value=0.00026 Score=86.44 Aligned_cols=35 Identities=37% Similarity=0.578 Sum_probs=32.8
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
++|||||||||+||+++|.+|++ .|++|+|+||++
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~-~g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLAS-AGKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHh-CCCEEEEEecCC
Confidence 46999999999999999999999 599999999985
No 353
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.22 E-value=0.00034 Score=76.56 Aligned_cols=36 Identities=31% Similarity=0.571 Sum_probs=32.7
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEE 738 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 738 (1306)
.||++|||||.+|+++|..|++ .|++||||||-+..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~-~gk~VLIvekR~HI 36 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQ-LGKRVLIVEKRNHI 36 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHH-cCCEEEEEeccccC
Confidence 3899999999999999999998 59999999998754
No 354
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.21 E-value=0.00031 Score=86.60 Aligned_cols=35 Identities=37% Similarity=0.631 Sum_probs=32.6
Q ss_pred CCCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 77 YPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 77 ~~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
...||+||||||++|+.+|.+|++ .|++|+|+|++
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~ 36 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQ-LGLKTALVEKG 36 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHh-CCCeEEEEEcc
Confidence 357999999999999999999999 79999999976
No 355
>PRK06370 mercuric reductase; Validated
Probab=97.21 E-value=0.00031 Score=86.38 Aligned_cols=35 Identities=43% Similarity=0.646 Sum_probs=32.7
Q ss_pred CCCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 77 YPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 77 ~~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
..+||+||||+|++|..+|.+|++ .|++|+|+|++
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~ 37 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAG-LGMKVALIERG 37 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence 357999999999999999999999 79999999986
No 356
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.20 E-value=0.00027 Score=86.40 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=31.5
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
+||+||||+|+||..+|.++++ .|++|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN-HGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh-CCCcEEEEecC
Confidence 6999999999999999999999 79999999985
No 357
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.20 E-value=0.00026 Score=83.69 Aligned_cols=35 Identities=37% Similarity=0.589 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~ 114 (1306)
+|||||||+|++|+++|..|++ .|++|+|+|+.+.
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~-~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALAR-AGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHH-TTCEEEEEESSSS
T ss_pred CceEEEECCCHHHHHHHHHHHh-cccccccchhccc
Confidence 5899999999999999999999 7999999999864
No 358
>PRK06116 glutathione reductase; Validated
Probab=97.19 E-value=0.0003 Score=86.13 Aligned_cols=34 Identities=44% Similarity=0.668 Sum_probs=32.2
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
.+||+||||+|++|+.+|.+|++ .|++|+|+|++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~-~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAM-YGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence 47999999999999999999999 79999999986
No 359
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.17 E-value=0.0003 Score=84.49 Aligned_cols=33 Identities=39% Similarity=0.559 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 703 yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+||||||+|++|+++|+.|++ .|++|+||||..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~-~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS-AGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh-CCCcEEEEecCC
Confidence 699999999999999999999 599999999964
No 360
>PLN02546 glutathione reductase
Probab=97.14 E-value=0.00034 Score=86.81 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=31.2
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~ 734 (1306)
.+|||||||+|++|..+|.+|++ .|++|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASN-FGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence 46999999999999999999999 5999999996
No 361
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.14 E-value=0.0038 Score=78.34 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=44.1
Q ss_pred cccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe--CCeEEEEEEcceEEEccCCCCc
Q psy1043 283 PVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK--NHQRHVIRARKEVILSGGAVNS 339 (1306)
Q Consensus 283 ~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~--~g~~~~v~A~k~VVLaAGai~S 339 (1306)
..+.+.|++|++++.|++|+.+++ +|+||...+ ++....|.|+ .||||+|++..
T Consensus 127 ~~~~~~gi~i~~~~~~~~Li~~~g--~v~Ga~~~~~~~g~~~~i~Ak-aVILATGG~~~ 182 (565)
T TIGR01816 127 QQNLKADTSFFNEYFALDLLMEDG--ECRGVIAYCLETGEIHRFRAK-AVVLATGGYGR 182 (565)
T ss_pred HHHHhCCCEEEeccEEEEEEeeCC--EEEEEEEEEcCCCcEEEEEeC-eEEECCCCccc
Confidence 344567899999999999998754 999998853 5667788885 59999999875
No 362
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.12 E-value=0.00041 Score=83.45 Aligned_cols=35 Identities=29% Similarity=0.509 Sum_probs=32.9
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
++|||||||+|++|+++|..|++ .|++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~-~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQ-HGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence 57999999999999999999999 799999999875
No 363
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.11 E-value=0.00045 Score=85.12 Aligned_cols=32 Identities=34% Similarity=0.550 Sum_probs=27.1
Q ss_pred EEEECCChhHHHHHHHHhCCCCCEEEEEcCCCC
Q psy1043 82 FIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114 (1306)
Q Consensus 82 vIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~ 114 (1306)
|+|||||++|+++|..|.| .|+.|+++|+.+.
T Consensus 4 VaVIGaG~sGL~a~k~l~e-~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 4 VAVIGAGPSGLAAAKNLLE-EGLEVTCFEKSDD 35 (531)
T ss_dssp EEEE--SHHHHHHHHHHHH-TT-EEEEEESSSS
T ss_pred EEEECccHHHHHHHHHHHH-CCCCCeEEecCCC
Confidence 8999999999999999999 6999999999864
No 364
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.11 E-value=0.00046 Score=83.00 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=33.1
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
..|||||||+|++|+++|+.|++ .|++|+|||+.+
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~-~G~~v~liE~~~ 39 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALAD-AGLSVALVEGRE 39 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc-CCCEEEEEeCCC
Confidence 57999999999999999999999 799999999985
No 365
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.10 E-value=0.00042 Score=85.25 Aligned_cols=34 Identities=41% Similarity=0.610 Sum_probs=32.1
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
.+||+||||+|++|+.+|.+|++ .|++|+|+|++
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~-~G~~V~liE~~ 36 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQ-LGLKVAIVEKE 36 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHH-CCCcEEEEecc
Confidence 47999999999999999999999 79999999976
No 366
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.10 E-value=0.00052 Score=80.53 Aligned_cols=34 Identities=35% Similarity=0.688 Sum_probs=31.7
Q ss_pred ccEEEECCChHHHHHHHHHHcCCCCEEEEECCCCC
Q psy1043 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE 737 (1306)
Q Consensus 703 yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 737 (1306)
|||+|||||++|+++|++|++ .|.+|+|||+.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~-~G~~V~viEk~~~ 35 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ-LNKRVLVVEKRNH 35 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 799999999999999999998 5999999999764
No 367
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.10 E-value=0.00041 Score=84.74 Aligned_cols=35 Identities=29% Similarity=0.704 Sum_probs=32.7
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
++|||||||||++|+.+|.+|++ .|++|+|+|+++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~-~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAK-AGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHH-CCCeEEEEcCCC
Confidence 36999999999999999999999 799999999874
No 368
>KOG1399|consensus
Probab=97.10 E-value=0.001 Score=79.53 Aligned_cols=35 Identities=34% Similarity=0.551 Sum_probs=32.1
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~ 114 (1306)
.-+|+|||||++|+++|..|.+ .|+.|+|+||.+.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~-~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLR-EGHEVVVFERTDD 40 (448)
T ss_pred CCceEEECcchHHHHHHHHHHH-CCCCceEEEecCC
Confidence 4589999999999999999999 7999999999863
No 369
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.10 E-value=0.00041 Score=85.11 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=31.8
Q ss_pred CCccEEEECCChHHHHHHHHHHcCC-CCEEEEECCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQK-NWKVLLLEAG 735 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~-G~~VlVLE~G 735 (1306)
.+||+||||+|++|..+|.++++ . |.+|+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~-~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAAT-LYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHH-hcCCEEEEEecc
Confidence 47999999999999999999999 4 8999999985
No 370
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.10 E-value=0.00035 Score=83.92 Aligned_cols=33 Identities=36% Similarity=0.492 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
+||||||+|++|+++|..||+ .|++|+|||+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~-~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS-AGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh-CCCcEEEEecCC
Confidence 699999999999999999999 799999999863
No 371
>KOG0029|consensus
Probab=97.07 E-value=0.00051 Score=83.51 Aligned_cols=39 Identities=33% Similarity=0.495 Sum_probs=34.8
Q ss_pred CCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCCCCC
Q psy1043 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEES 739 (1306)
Q Consensus 700 ~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 739 (1306)
.+..+|||||||++|++||.+|.+. |.+|+|||+-++..
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVG 51 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcC
Confidence 3578999999999999999999995 99999999987643
No 372
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.07 E-value=0.00045 Score=85.60 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=42.1
Q ss_pred cccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHH
Q psy1043 283 PVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILM 344 (1306)
Q Consensus 283 ~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl 344 (1306)
..+++.|++|++++.|++|..+++ ++.||++.+ ++ ++.|+. ||+++|...+-..|+
T Consensus 237 ~~~~~~G~~i~~~~~V~~I~~~~~--~~~gv~~~~-g~--~~~ad~-vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 237 KGLEKHGGQIRYRARVTKIILENG--KAVGVKLAD-GE--KIYAKR-IVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHCCCEEEeCCeeeEEEecCC--cEEEEEeCC-CC--EEEcCE-EEECCChHHHHHHhC
Confidence 445677899999999999998765 888988754 32 477876 999999765554343
No 373
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.06 E-value=0.0005 Score=82.61 Aligned_cols=36 Identities=31% Similarity=0.531 Sum_probs=33.3
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~ 114 (1306)
..|||||||+|++|+++|..|++ .|++|+|||+++.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQ-SGLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 36899999999999999999999 7999999999863
No 374
>PRK09897 hypothetical protein; Provisional
Probab=97.06 E-value=0.0048 Score=75.85 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=29.6
Q ss_pred ccEEEECCChhHHHHHHHHhCC-CCCEEEEEcCCCC
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEI-ENWKILLLEAGGD 114 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~-~G~~VLvLE~G~~ 114 (1306)
.+|+|||+|++|+.+|.+|.+. ...+|.|+|++..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence 4799999999999999999872 3468999999753
No 375
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.06 E-value=0.00049 Score=84.50 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=31.2
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
+||+||||+|+||+.+|.+|++ .|++|+|+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~-~G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQ-LGLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence 5999999999999999999999 79999999964
No 376
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.06 E-value=0.00071 Score=80.29 Aligned_cols=34 Identities=35% Similarity=0.537 Sum_probs=31.1
Q ss_pred EEEECCChHHHHHHHHHHcCCC--CEEEEECCCCCCC
Q psy1043 705 FVVVGGGSAGAVVARRLSEQKN--WKVLLLEAGGEES 739 (1306)
Q Consensus 705 vIVIGsG~aG~~aA~~Lae~~G--~~VlVLE~G~~~~ 739 (1306)
++|||||++|+++|++|.+ .+ ..|.|+|++++..
T Consensus 3 i~IiG~GiaGLsaAy~L~k-~~p~~~i~lfE~~~r~G 38 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQK-AGPDVEVTLFEADDRVG 38 (444)
T ss_pred EEEECCcHHHHHHHHHHHH-hCCCCcEEEEecCCCCC
Confidence 7999999999999999999 48 9999999997653
No 377
>KOG0405|consensus
Probab=97.05 E-value=0.0029 Score=69.78 Aligned_cols=34 Identities=41% Similarity=0.702 Sum_probs=32.3
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G 735 (1306)
.+||+.|||+|.+|..+|.+.++ -|.+|.|+|..
T Consensus 19 k~fDylvIGgGSGGvasARrAa~-~GAkv~l~E~~ 52 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAAS-HGAKVALCELP 52 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHh-cCceEEEEecC
Confidence 48999999999999999999999 59999999997
No 378
>PRK08013 oxidoreductase; Provisional
Probab=97.04 E-value=0.00053 Score=82.61 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=32.8
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~ 114 (1306)
+|||||||+|++|+++|..|++ .|++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-SGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-CCCEEEEEeCCCC
Confidence 5999999999999999999999 7999999999863
No 379
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.03 E-value=0.00057 Score=84.11 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=32.5
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
..||+||||+|++|+.+|.+|++ .|++|+|+|+++
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~-~G~~v~liE~~~ 38 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAK-LGKRVAVIERYR 38 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-CCCEEEEEeccc
Confidence 46999999999999999999999 799999999863
No 380
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.03 E-value=0.00058 Score=83.94 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=32.5
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
..||+||||+|++|..+|.+|++ .|++|+|+|+.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~~ 37 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAAD-LGLETVCVERYS 37 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 46999999999999999999999 799999999863
No 381
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.03 E-value=0.00061 Score=81.87 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=32.7
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
..|||||||+|++|+++|..|++ .|++|+|||+.+
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~-~G~~v~liE~~~ 40 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALAR-AGASVALVAPEP 40 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc-CCCeEEEEeCCC
Confidence 46999999999999999999998 799999999975
No 382
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.03 E-value=0.00055 Score=84.18 Aligned_cols=34 Identities=47% Similarity=0.755 Sum_probs=31.9
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G 735 (1306)
.+||+||||||++|+++|.+|++ .|++|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAK-LGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 46999999999999999999999 59999999994
No 383
>PLN02463 lycopene beta cyclase
Probab=97.02 E-value=0.00055 Score=82.74 Aligned_cols=35 Identities=31% Similarity=0.523 Sum_probs=32.6
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
..|||||||+|++|+++|..|++ .|++|+|||+.+
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~-~Gl~V~liE~~~ 61 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSE-AGLSVCCIDPSP 61 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHH-CCCeEEEeccCc
Confidence 57999999999999999999998 799999999864
No 384
>PRK09126 hypothetical protein; Provisional
Probab=97.02 E-value=0.0005 Score=82.71 Aligned_cols=35 Identities=37% Similarity=0.495 Sum_probs=33.0
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~ 114 (1306)
+|||||||+|++|+++|..|++ .|++|+|+|+...
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG-SGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh-CCCcEEEEeCCCc
Confidence 5999999999999999999999 7999999999964
No 385
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.02 E-value=0.0006 Score=82.43 Aligned_cols=34 Identities=35% Similarity=0.635 Sum_probs=32.2
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
+|||+|||+|++|+++|..|++ .|++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQG-SGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence 5899999999999999999999 799999999985
No 386
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.02 E-value=0.00063 Score=79.87 Aligned_cols=34 Identities=41% Similarity=0.740 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCC
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~ 114 (1306)
||+||||||.+|+++|.+|++ .|.+|+|||+...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~-~G~~V~viEk~~~ 35 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ-LNKRVLVVEKRNH 35 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 799999999999999999998 7999999999754
No 387
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.00 E-value=0.00058 Score=83.35 Aligned_cols=34 Identities=38% Similarity=0.658 Sum_probs=32.4
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
+||+||||||+||+.+|.+|++ .|++|+|+|+++
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~-~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS-AGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh-CCCEEEEEecCC
Confidence 6999999999999999999999 799999999985
No 388
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.00 E-value=0.00059 Score=81.82 Aligned_cols=35 Identities=46% Similarity=0.707 Sum_probs=32.7
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
.+||+||||+|++|-++|.++++ .|.+|+|+|+++
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~-~G~kvalvE~~~ 37 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQ-LGLKVALVEKGE 37 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-CCCCEEEEeecC
Confidence 57999999999999999999999 799999999883
No 389
>PLN02546 glutathione reductase
Probab=97.00 E-value=0.00056 Score=84.98 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=31.2
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEA 111 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~ 111 (1306)
.+|||||||+|++|..+|.+|++ .|++|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASN-FGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence 46999999999999999999999 7999999996
No 390
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.98 E-value=0.00062 Score=83.88 Aligned_cols=34 Identities=38% Similarity=0.550 Sum_probs=31.9
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G 735 (1306)
.+||+||||+|++|+++|.+|++ .|++|+|||++
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~-~g~~v~lie~~ 36 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQ-LGLKVACIEAW 36 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHh-CCCeEEEEecc
Confidence 47999999999999999999999 59999999984
No 391
>PRK13748 putative mercuric reductase; Provisional
Probab=96.95 E-value=0.00067 Score=85.68 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=32.0
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G 735 (1306)
.+|||||||+|++|+++|.+|++ .|.+|+|||++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~-~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE-QGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecC
Confidence 36999999999999999999999 59999999997
No 392
>PLN02576 protoporphyrinogen oxidase
Probab=96.94 E-value=0.00069 Score=84.28 Aligned_cols=38 Identities=34% Similarity=0.428 Sum_probs=34.1
Q ss_pred CCccEEEECCChHHHHHHHHHHcCC-CCEEEEECCCCCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQK-NWKVLLLEAGGEES 739 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~-G~~VlVLE~G~~~~ 739 (1306)
..+||||||||++|+++|++|++ . |++|+|||+.+...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~-~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALAS-KHGVNVLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH-hcCCCEEEEecCCCCC
Confidence 46899999999999999999998 7 89999999987543
No 393
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.94 E-value=0.00067 Score=82.68 Aligned_cols=34 Identities=47% Similarity=0.782 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHcC---CCCEEEEECCCC
Q psy1043 703 YDFVVVGGGSAGAVVARRLSEQ---KNWKVLLLEAGG 736 (1306)
Q Consensus 703 yDvIVIGsG~aG~~aA~~Lae~---~G~~VlVLE~G~ 736 (1306)
|||||||+|++|+++|+.|++. .|++|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 7999999999999999999982 399999999964
No 394
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.94 E-value=0.00077 Score=82.90 Aligned_cols=32 Identities=28% Similarity=0.584 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
||+||||||++|..+|.+|++ .|++|+|+|++
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~-~g~~v~lie~~ 32 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAE-LGASVAMVERG 32 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 899999999999999999999 79999999986
No 395
>PTZ00367 squalene epoxidase; Provisional
Probab=96.94 E-value=0.00078 Score=83.68 Aligned_cols=35 Identities=46% Similarity=0.728 Sum_probs=32.6
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
.+|||||||+|++|+++|+.|++ .|++|+||||..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar-~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSK-QGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHh-cCCEEEEEcccc
Confidence 47999999999999999999999 599999999974
No 396
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.93 E-value=0.00069 Score=85.30 Aligned_cols=34 Identities=29% Similarity=0.527 Sum_probs=31.9
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G 735 (1306)
.+|||||||+|++|..+|.++++ .|++|+|+|++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~-~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAME-RGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 37999999999999999999999 59999999976
No 397
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.92 E-value=0.0008 Score=80.07 Aligned_cols=33 Identities=39% Similarity=0.675 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHH--hCCCCCEEEEEcCCCC
Q psy1043 81 DFIVVGAGSAGAVVANRL--SEIENWKILLLEAGGD 114 (1306)
Q Consensus 81 DvIIVGsG~aG~~~A~rL--ae~~G~~VLvLE~G~~ 114 (1306)
||||||+|+||+++|.+| +. .|.+|+|||+.+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~-~g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADAR-PGLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcC-CCCEEEEEcCCcc
Confidence 899999999999999999 77 7999999998863
No 398
>PLN02697 lycopene epsilon cyclase
Probab=96.92 E-value=0.00073 Score=82.99 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=34.7
Q ss_pred cCCcEEeeccCCCCCCCccchHHHHHHHHHHHHHHHHhHhh
Q psy1043 608 IGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDMIKQDWRK 648 (1306)
Q Consensus 608 v~NL~V~DaSv~Pt~~~~NP~lTi~alAeraAd~I~~~~~~ 648 (1306)
-+.|.|=|++=|-...++--...++.-|..+|+.|.+.++.
T Consensus 372 ~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~ 412 (529)
T PLN02697 372 QKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKN 412 (529)
T ss_pred CCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhC
Confidence 35678888888888888888999999999999999988754
No 399
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.91 E-value=0.00075 Score=83.00 Aligned_cols=33 Identities=33% Similarity=0.560 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 703 yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
||+||||||++|+++|.+|++ .|++|+|+|++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~-~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAE-LGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCc
Confidence 899999999999999999999 599999999974
No 400
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.90 E-value=0.0008 Score=80.63 Aligned_cols=34 Identities=32% Similarity=0.607 Sum_probs=32.0
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
+|||||||+|++|+++|..|++ .|++|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~-~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK-QGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh-CCCcEEEEcCCC
Confidence 5899999999999999999999 799999999874
No 401
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.89 E-value=0.00082 Score=82.67 Aligned_cols=35 Identities=34% Similarity=0.493 Sum_probs=32.4
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
.+||+||||+|++|..+|.+|++ .|++|+|+|++.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~-~G~~V~lie~~~ 37 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQ-LGLKTAVVEKKY 37 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEecCC
Confidence 36999999999999999999999 799999999873
No 402
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.88 E-value=0.013 Score=70.91 Aligned_cols=32 Identities=34% Similarity=0.582 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHcCCC-CEEEEECCCC
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQKN-WKVLLLEAGG 736 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~~G-~~VlVLE~G~ 736 (1306)
.|+|||+|++|+++|+.|++. | .+|+|+||.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCC
Confidence 489999999999999999994 7 5999999975
No 403
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.88 E-value=0.00079 Score=84.39 Aligned_cols=35 Identities=26% Similarity=0.487 Sum_probs=32.5
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
..|||||||||+||+.+|.+|++ .|++|+|+|++.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar-~g~~V~liE~~~ 37 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGR-AKLDTLIIEKDD 37 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence 46999999999999999999998 799999999863
No 404
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.88 E-value=0.00082 Score=84.63 Aligned_cols=34 Identities=26% Similarity=0.511 Sum_probs=31.9
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
.+||+||||+|++|..+|.++++ .|++|+|+|++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~-~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAME-RGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 37999999999999999999999 79999999965
No 405
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.87 E-value=0.0044 Score=74.24 Aligned_cols=50 Identities=16% Similarity=0.196 Sum_probs=38.6
Q ss_pred hhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcc
Q psy1043 904 LRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIG 965 (1306)
Q Consensus 904 L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~ 965 (1306)
|...+.+ |++|++++.|++|..++ ++ ++|++.+|. .+.|++ ||+|+|++.
T Consensus 141 l~~~~~~-G~~i~~~~~V~~i~~~~-----~~-~~v~t~~g~----~~~a~~-vV~a~G~~~ 190 (381)
T TIGR03197 141 LLAHAGI-RLTLHFNTEITSLERDG-----EG-WQLLDANGE----VIAASV-VVLANGAQA 190 (381)
T ss_pred HHhccCC-CcEEEeCCEEEEEEEcC-----Ce-EEEEeCCCC----EEEcCE-EEEcCCccc
Confidence 4445667 99999999999998765 34 457777774 578987 999999863
No 406
>PRK14694 putative mercuric reductase; Provisional
Probab=96.87 E-value=0.00088 Score=82.43 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=32.7
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
..|||||||+|++|+++|.+|++ .|++|+|+|++.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~-~g~~v~lie~~~ 39 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATE-RGARVTLIERGT 39 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEEccc
Confidence 47999999999999999999999 599999999974
No 407
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.86 E-value=0.00095 Score=81.92 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=31.7
Q ss_pred CCccEEEECCChhHHHHHHHHhCCC-CCEEEEEcCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIE-NWKILLLEAG 112 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~-G~~VLvLE~G 112 (1306)
.+||+||||+|++|..+|.++++ . |.+|+|+|++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~-~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAAT-LYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHH-hcCCEEEEEecc
Confidence 47999999999999999999998 5 8999999985
No 408
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.85 E-value=0.00095 Score=82.48 Aligned_cols=33 Identities=39% Similarity=0.632 Sum_probs=31.3
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G 735 (1306)
.||+||||+|++|+.+|.+|++ .|++|+|||++
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~-~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAA-HGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHh-CCCeEEEEecc
Confidence 6999999999999999999999 59999999985
No 409
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.83 E-value=0.00096 Score=80.17 Aligned_cols=32 Identities=31% Similarity=0.562 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 81 DvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
||||||+|++|+++|.+|++ .|++|+|||+.+
T Consensus 1 DviIiGaG~AGl~~A~~la~-~g~~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh-CCCeEEEEccCC
Confidence 89999999999999999998 799999999885
No 410
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.82 E-value=0.00094 Score=82.18 Aligned_cols=33 Identities=36% Similarity=0.615 Sum_probs=31.2
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
+||+||||||++|+.+|.+|++ .|++|+|||++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~-~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQ-LGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence 4999999999999999999999 79999999984
No 411
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.81 E-value=0.001 Score=80.29 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=31.4
Q ss_pred CccEEEECCChhHHHHHHHHhCCC--CCEEEEEcCCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIE--NWKILLLEAGG 113 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~--G~~VLvLE~G~ 113 (1306)
.|||||||+|++|+++|..|++ . |++|+|||+.+
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~-~g~g~~v~liE~~~ 36 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQ-AAPHLPVTVVDAAP 36 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhc-CCCCCEEEEEeCCC
Confidence 3899999999999999999999 5 49999999986
No 412
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.00089 Score=76.33 Aligned_cols=35 Identities=37% Similarity=0.632 Sum_probs=31.1
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCE-EEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWK-ILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~-VLvLE~G~ 113 (1306)
..|||||||||++|+++|..++. .+++ ++|+|++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r-~~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAAR-AGLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHH-cCCCcEEEEecCC
Confidence 46999999999999999999999 7988 77777763
No 413
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.81 E-value=0.00098 Score=82.11 Aligned_cols=34 Identities=35% Similarity=0.552 Sum_probs=32.0
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
.+||+||||+|++|+.+|.+|++ .|++|+|||++
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~-~g~~v~lie~~ 36 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQ-LGLKVACIEAW 36 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHh-CCCeEEEEecc
Confidence 47999999999999999999999 79999999984
No 414
>KOG2852|consensus
Probab=96.81 E-value=0.00096 Score=71.74 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=43.6
Q ss_pred ccccccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeC-CeEEEEEEcceEEEccCCCCcHHHHHHhCC
Q psy1043 280 FLQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKN-HQRHVIRARKEVILSGGAVNSPQILMLSGI 348 (1306)
Q Consensus 280 ~l~~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~-g~~~~v~A~k~VVLaAGai~Sp~LLl~SGi 348 (1306)
.+..+.++.|++++.+. |..|.-+ .+ |+++|..... +..+...+.+ +|||||. +|++||..-+|
T Consensus 153 i~sea~k~~~V~lv~Gk-v~ev~dE-k~-r~n~v~~ae~~~ti~~~d~~~-ivvsaGP-WTskllp~~rI 217 (380)
T KOG2852|consen 153 ILSEAEKRGGVKLVFGK-VKEVSDE-KH-RINSVPKAEAEDTIIKADVHK-IVVSAGP-WTSKLLPFTRI 217 (380)
T ss_pred HHHHHHhhcCeEEEEee-eEEeecc-cc-cccccchhhhcCceEEeeeeE-EEEecCC-Cchhhcccccc
Confidence 34456778899999885 6666533 22 7777766422 2234455655 9999996 89999988765
No 415
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.80 E-value=0.0011 Score=80.07 Aligned_cols=34 Identities=26% Similarity=0.520 Sum_probs=31.9
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
..|||+|||+|++|+++|..|++ .|++|+|||+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~-~G~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKE-SDLRIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHh-CCCEEEEEcCC
Confidence 36899999999999999999999 79999999986
No 416
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.80 E-value=0.001 Score=80.05 Aligned_cols=34 Identities=41% Similarity=0.516 Sum_probs=31.6
Q ss_pred CCccEEEECCChhHHHHHHHHhCCC---CCEEEEEcCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIE---NWKILLLEAG 112 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~---G~~VLvLE~G 112 (1306)
..|||||||+|++|+++|..|++ . |++|+|||+-
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~-~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSR-LSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhh-cccCCCEEEEEeCC
Confidence 36999999999999999999988 6 9999999985
No 417
>KOG2311|consensus
Probab=96.80 E-value=0.0015 Score=74.65 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=31.2
Q ss_pred CCCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 77 YPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 77 ~~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
...|||||||+|-|||-+|...|+ -|.+.+||-..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR-~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAAR-LGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHh-cCCceEEeecc
Confidence 468999999999999999999998 79999998644
No 418
>PLN02268 probable polyamine oxidase
Probab=96.79 E-value=0.0012 Score=80.50 Aligned_cols=35 Identities=40% Similarity=0.657 Sum_probs=32.4
Q ss_pred cEEEECCChHHHHHHHHHHcCCCCEEEEECCCCCCC
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEES 739 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 739 (1306)
+|||||||++|+++|++|.+ .|++|+|||+.++..
T Consensus 2 ~VvVIGaGisGL~aA~~L~~-~g~~v~vlEa~~r~G 36 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD-ASFKVTLLESRDRIG 36 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCCCC
Confidence 79999999999999999999 599999999988764
No 419
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.79 E-value=0.0092 Score=66.24 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=31.2
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEE 738 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~ 738 (1306)
.-++.|||||++|+++|+.|+. -.+|.|.|++...
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~--rhdVTLfEA~~rl 42 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSR--RHDVTLFEADRRL 42 (447)
T ss_pred CcceEEEcccchhhhhHHhhhc--ccceEEEeccccc
Confidence 3568999999999999999997 6899999999754
No 420
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.77 E-value=0.0013 Score=78.89 Aligned_cols=33 Identities=42% Similarity=0.539 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHhCCCC-CEEEEEcCCCC
Q psy1043 81 DFIVVGAGSAGAVVANRLSEIEN-WKILLLEAGGD 114 (1306)
Q Consensus 81 DvIIVGsG~aG~~~A~rLae~~G-~~VLvLE~G~~ 114 (1306)
||||||+|++|+++|..|++ .| ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~-~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR-LGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhc-CCCceEEEEeCCCc
Confidence 89999999999999999999 79 99999999864
No 421
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.76 E-value=0.0011 Score=81.42 Aligned_cols=34 Identities=47% Similarity=0.730 Sum_probs=31.8
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
.+||+||||||++|+.+|.+|++ .|++|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAK-LGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 36999999999999999999999 79999999984
No 422
>KOG0029|consensus
Probab=96.76 E-value=0.0012 Score=80.28 Aligned_cols=38 Identities=34% Similarity=0.496 Sum_probs=34.4
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDET 116 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~~ 116 (1306)
+..+|||||||.+|+++|..|.+ .|.+|+|||+-++..
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~-~G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQD-FGFDVLVLEARDRVG 51 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHH-cCCceEEEeccCCcC
Confidence 57899999999999999999999 799999999976543
No 423
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.76 E-value=0.0014 Score=80.03 Aligned_cols=34 Identities=35% Similarity=0.666 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhCC---CCCEEEEEcCCC
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEI---ENWKILLLEAGG 113 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~---~G~~VLvLE~G~ 113 (1306)
|||||||+|++|+++|..|++. .|++|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 7999999999999999999973 499999999964
No 424
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=96.73 E-value=0.0013 Score=81.57 Aligned_cols=35 Identities=31% Similarity=0.539 Sum_probs=32.5
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCCC
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDE 115 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~ 115 (1306)
-||||||||.+|+++|..|++ .|++|+|||+....
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~-~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAK-RGYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence 589999999999999999999 79999999998654
No 425
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.72 E-value=0.0011 Score=76.28 Aligned_cols=33 Identities=39% Similarity=0.606 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
||+||||||++|+.+|..|++ .|.+|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAAR-ANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHH-CCCCEEEEeccC
Confidence 799999999999999999998 799999999884
No 426
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.72 E-value=0.0013 Score=81.35 Aligned_cols=34 Identities=29% Similarity=0.490 Sum_probs=31.8
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
..||+||||+|++|+.+|.+|++ .|++|+|||++
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~-~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAA-HGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHh-CCCeEEEEecc
Confidence 36999999999999999999999 79999999975
No 427
>PTZ00367 squalene epoxidase; Provisional
Probab=96.71 E-value=0.0015 Score=81.16 Aligned_cols=35 Identities=43% Similarity=0.659 Sum_probs=32.8
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
.+|||||||+|++|+++|..|++ .|++|+|||+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar-~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSK-QGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHh-cCCEEEEEcccc
Confidence 47999999999999999999999 799999999874
No 428
>PRK13748 putative mercuric reductase; Provisional
Probab=96.70 E-value=0.0013 Score=82.96 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=32.6
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
.+||+||||+|++|+.+|.+|++ .|.+|+|+|++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~-~G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE-QGARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCc
Confidence 46999999999999999999999 799999999873
No 429
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.70 E-value=0.0014 Score=77.73 Aligned_cols=33 Identities=39% Similarity=0.807 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHHcC-CCCEEEEECCCC
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQ-KNWKVLLLEAGG 736 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~-~G~~VlVLE~G~ 736 (1306)
||||||+|++|+++|++|++. +|++|+|||+++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 899999999999999999972 399999999985
No 430
>PRK14694 putative mercuric reductase; Provisional
Probab=96.69 E-value=0.0013 Score=80.87 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=32.9
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
..||+||||+|++|+++|.+|++ .|++|+|+|++.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~-~g~~v~lie~~~ 39 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATE-RGARVTLIERGT 39 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEEccc
Confidence 57999999999999999999999 799999999874
No 431
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.69 E-value=0.0019 Score=81.92 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=34.5
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 698 EMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 698 ~~~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
.|.+++||+|||||++|+++|+.|++.+|.+|+|||+.+
T Consensus 28 ~~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~ 66 (634)
T PRK08294 28 DLPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 (634)
T ss_pred cCCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence 355689999999999999999999982299999999975
No 432
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.67 E-value=0.0014 Score=77.61 Aligned_cols=33 Identities=42% Similarity=0.750 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhCC-CCCEEEEEcCCC
Q psy1043 81 DFIVVGAGSAGAVVANRLSEI-ENWKILLLEAGG 113 (1306)
Q Consensus 81 DvIIVGsG~aG~~~A~rLae~-~G~~VLvLE~G~ 113 (1306)
||||||+|+||+++|.+|++. +|++|+|||+++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 899999999999999999972 399999999985
No 433
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.64 E-value=0.043 Score=56.43 Aligned_cols=31 Identities=26% Similarity=0.560 Sum_probs=27.2
Q ss_pred EEECCChHHHHHHHHHHcCC----CCEEEEECCCC
Q psy1043 706 VVVGGGSAGAVVARRLSEQK----NWKVLLLEAGG 736 (1306)
Q Consensus 706 IVIGsG~aG~~aA~~Lae~~----G~~VlVLE~G~ 736 (1306)
+|||+|++|++++.+|.+.. ..+|.|+|+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 49999999999999999853 66899999965
No 434
>PLN02507 glutathione reductase
Probab=96.64 E-value=0.0015 Score=80.80 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=31.4
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEA 111 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~ 111 (1306)
.+||+||||+|++|..+|.+|++ .|++|+|+|+
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~-~G~~V~liE~ 56 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSAN-FGAKVGICEL 56 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence 47999999999999999999999 7999999996
No 435
>PLN02576 protoporphyrinogen oxidase
Probab=96.62 E-value=0.0017 Score=80.70 Aligned_cols=38 Identities=32% Similarity=0.400 Sum_probs=34.3
Q ss_pred CCccEEEECCChhHHHHHHHHhCCC-CCEEEEEcCCCCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIE-NWKILLLEAGGDET 116 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~-G~~VLvLE~G~~~~ 116 (1306)
.++||||||||.+|+++|++|++ . |++|+|||+.+...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~-~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALAS-KHGVNVLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH-hcCCCEEEEecCCCCC
Confidence 56899999999999999999998 7 89999999987543
No 436
>PRK14727 putative mercuric reductase; Provisional
Probab=96.61 E-value=0.0017 Score=80.06 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=32.5
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
..||+||||+|++|+.+|.+|++ .|.+|+|+|++.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~-~g~~v~~ie~~~ 49 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAE-HGARVTIIEGAD 49 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 36999999999999999999999 599999999974
No 437
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=96.61 E-value=0.0017 Score=79.83 Aligned_cols=35 Identities=31% Similarity=0.509 Sum_probs=31.4
Q ss_pred cEEEECCChHHHHHHHHHHcCCC--CEEEEECCCCCCC
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQKN--WKVLLLEAGGEES 739 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~~G--~~VlVLE~G~~~~ 739 (1306)
+|||||||++|++||++|++. | ++|+|||+.+...
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLG 38 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCc
Confidence 589999999999999999994 7 8999999987653
No 438
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.61 E-value=0.0032 Score=76.66 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=35.2
Q ss_pred hhhccccccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccC
Q psy1043 277 SKAFLQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGG 335 (1306)
Q Consensus 277 ~~~~l~~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAG 335 (1306)
...+|...+.+.|++++.++ |+++..++++ .+++|+..+ + .++.|+- ||=|+|
T Consensus 156 fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g-~i~~v~~~~-g--~~i~ad~-~IDASG 208 (454)
T PF04820_consen 156 FDQFLRRHAEERGVEVIEGT-VVDVELDEDG-RITAVRLDD-G--RTIEADF-FIDASG 208 (454)
T ss_dssp HHHHHHHHHHHTT-EEEET--EEEEEE-TTS-EEEEEEETT-S--EEEEESE-EEE-SG
T ss_pred HHHHHHHHHhcCCCEEEeCE-EEEEEEcCCC-CEEEEEECC-C--CEEEEeE-EEECCC
Confidence 34456666666799999875 8888887754 788887644 3 3688965 888888
No 439
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.60 E-value=0.0018 Score=79.75 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=32.8
Q ss_pred CccEEEECCChHHHHHHHHHHcCC----CCEEEEECCCCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQK----NWKVLLLEAGGEE 738 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~----G~~VlVLE~G~~~ 738 (1306)
..||||||||++|+++|++|++ . |++|+|+|+.+..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~-~~~~~g~~v~vlE~~~r~ 41 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEK-EIPELPVELTLVEASDRV 41 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHh-cCCCCCCcEEEEEcCCcC
Confidence 3689999999999999999998 5 8999999998765
No 440
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.0018 Score=76.58 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=31.4
Q ss_pred EEEECCChHHHHHHHHHHcCCCCEEEEECCCCCCC
Q psy1043 705 FVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEES 739 (1306)
Q Consensus 705 vIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 739 (1306)
|+|+|+|.||+++|++||+ +|++|.|+|++++..
T Consensus 3 Vai~GaG~AgL~~a~~La~-~g~~vt~~ea~~~~G 36 (485)
T COG3349 3 VAIAGAGLAGLAAAYELAD-AGYDVTLYEARDRLG 36 (485)
T ss_pred EEEEcccHHHHHHHHHHHh-CCCceEEEeccCccC
Confidence 8999999999999999999 599999999998543
No 441
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=96.55 E-value=0.0023 Score=74.31 Aligned_cols=37 Identities=35% Similarity=0.512 Sum_probs=34.0
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDE 115 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~ 115 (1306)
+..||||||+|.+||++|++|.+ .|++|+|||+-++.
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~k-aG~~v~ilEar~r~ 42 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKK-AGYQVQILEARDRV 42 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhh-cCcEEEEEeccCCc
Confidence 57999999999999999999998 79999999987653
No 442
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.55 E-value=0.02 Score=63.61 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDE 115 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~ 115 (1306)
.-++.|||||.+|+++|+.|+. -++|.|.|++...
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~--rhdVTLfEA~~rl 42 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSR--RHDVTLFEADRRL 42 (447)
T ss_pred CcceEEEcccchhhhhHHhhhc--ccceEEEeccccc
Confidence 4578999999999999999997 4799999999753
No 443
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=96.54 E-value=0.0025 Score=68.61 Aligned_cols=32 Identities=41% Similarity=0.646 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
||||||+|++|+.+|.+|++ .|++|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-PGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-TTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-CCCeEEEEeccc
Confidence 79999999999999999998 699999999875
No 444
>PLN02568 polyamine oxidase
Probab=96.53 E-value=0.0027 Score=78.77 Aligned_cols=39 Identities=23% Similarity=0.446 Sum_probs=34.0
Q ss_pred CCCccEEEECCChHHHHHHHHHHcCCC-----CEEEEECCCCCCC
Q psy1043 700 YPEYDFVVVGGGSAGAVVARRLSEQKN-----WKVLLLEAGGEES 739 (1306)
Q Consensus 700 ~~~yDvIVIGsG~aG~~aA~~Lae~~G-----~~VlVLE~G~~~~ 739 (1306)
+..+||||||+|++|+++|.+|++. | ++|+|||+.....
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCcC
Confidence 3468999999999999999999984 6 9999999987543
No 445
>PRK06996 hypothetical protein; Provisional
Probab=96.51 E-value=0.0025 Score=76.75 Aligned_cols=35 Identities=34% Similarity=0.672 Sum_probs=31.7
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCC----CEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIEN----WKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G----~~VLvLE~G~ 113 (1306)
.+|||+|||+|++|+++|..|++ .| ++|+|+|+.+
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~-~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLAR-RSATRALSIALIDARE 48 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc-CCCcCCceEEEecCCC
Confidence 57999999999999999999998 55 6899999975
No 446
>PLN02268 probable polyamine oxidase
Probab=96.50 E-value=0.0024 Score=77.98 Aligned_cols=35 Identities=34% Similarity=0.546 Sum_probs=32.2
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCCCC
Q psy1043 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDET 116 (1306)
Q Consensus 81 DvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~~ 116 (1306)
+|||||||.+|+++|++|.+ .|++|+|||+.++..
T Consensus 2 ~VvVIGaGisGL~aA~~L~~-~g~~v~vlEa~~r~G 36 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD-ASFKVTLLESRDRIG 36 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCCCC
Confidence 79999999999999999998 799999999987654
No 447
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.50 E-value=0.0022 Score=77.25 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=32.7
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
...||||||+|++|+++|..|++ .|++|+|+|+.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~-~g~~v~v~Er~~ 37 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALAR-QGIKVKLLEQAA 37 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHh-CCCcEEEEeeCc
Confidence 46899999999999999999999 799999999985
No 448
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=96.50 E-value=0.002 Score=80.27 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=41.0
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHH
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILM 344 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl 344 (1306)
.+++.|++|++++.|++|..+++ ++++|++.+ ++ .+.|+. ||+|++...+-..|+
T Consensus 228 ~~~~~G~~i~~~~~V~~i~~~~~--~~~~V~~~~-g~--~~~ad~-VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 228 LAEDLGGELRLNAEVIRIETEGG--RATAVHLAD-GE--RLDADA-VVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHCCCEEEECCeEEEEEeeCC--EEEEEEECC-CC--EEECCE-EEECCcHHHHHHHhc
Confidence 44566899999999999998765 788887643 32 467876 999888766655554
No 449
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.49 E-value=0.0022 Score=75.37 Aligned_cols=33 Identities=30% Similarity=0.354 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 703 yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
-||+|||||.+|+.+|+.||+ .|++|+|+|+.+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr-~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAK-RGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCcEEEEEccC
Confidence 489999999999999999999 599999999876
No 450
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.44 E-value=0.0037 Score=79.36 Aligned_cols=38 Identities=32% Similarity=0.469 Sum_probs=34.0
Q ss_pred CCCCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 76 LYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 76 ~~~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
+.+++||||||||++|+++|..|++.+|.+|+|||+-+
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~ 66 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence 55789999999999999999999982399999999875
No 451
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.43 E-value=0.026 Score=66.30 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=43.6
Q ss_pred hHhhhhhhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEeCCeeeeEEEEeCcEEEEcCCCcchHHHhc
Q psy1043 900 AKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYL 971 (1306)
Q Consensus 900 ~~~~L~~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~~G~~~~~~v~A~k~VVLAAGai~sp~LLl 971 (1306)
...+....+++.|++|++++.|++|.-+ +|.+.+|.. +|.++. ||-|||.=.+|-+-.
T Consensus 211 l~~~a~~~L~~~GV~v~l~~~Vt~v~~~----------~v~~~~g~~---~I~~~t-vvWaaGv~a~~~~~~ 268 (405)
T COG1252 211 LSKYAERALEKLGVEVLLGTPVTEVTPD----------GVTLKDGEE---EIPADT-VVWAAGVRASPLLKD 268 (405)
T ss_pred HHHHHHHHHHHCCCEEEcCCceEEECCC----------cEEEccCCe---eEecCE-EEEcCCCcCChhhhh
Confidence 3345556778999999999999999554 477777752 488977 999999866665543
No 452
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.41 E-value=0.0027 Score=78.09 Aligned_cols=33 Identities=39% Similarity=0.729 Sum_probs=31.3
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G 735 (1306)
+||+||||+|++|..+|.+|++ .|++|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~-~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAD-YGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence 5999999999999999999999 59999999986
No 453
>PRK07588 hypothetical protein; Provisional
Probab=96.41 E-value=0.0024 Score=76.74 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 81 DvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
||||||||++|+++|..|++ .|++|+|+|+.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~-~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR-YGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHH-CCCceEEEeCCC
Confidence 79999999999999999999 799999999985
No 454
>PRK07236 hypothetical protein; Provisional
Probab=96.41 E-value=0.0026 Score=76.31 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=32.6
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
..+||||||||++|+++|..|++ .|++|+|+|+.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~-~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRR-AGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh-CCCCEEEEecCC
Confidence 35899999999999999999999 799999999885
No 455
>KOG2614|consensus
Probab=96.39 E-value=0.0031 Score=72.19 Aligned_cols=34 Identities=38% Similarity=0.536 Sum_probs=31.1
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+-+|||||||++|+++|+.|++ .|++|+|+|+..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r-~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHR-KGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHH-cCCeEEEEeecc
Confidence 4579999999999999999999 599999999954
No 456
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.39 E-value=0.0027 Score=74.10 Aligned_cols=35 Identities=34% Similarity=0.416 Sum_probs=26.5
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
.||+|+||.|++++++|..|.+....+++.||+-+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~ 36 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP 36 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC
Confidence 59999999999999999999995458999999865
No 457
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.37 E-value=0.11 Score=61.64 Aligned_cols=68 Identities=10% Similarity=0.288 Sum_probs=49.2
Q ss_pred ccchhHhhhhh---hhcCCCcEEEecceEEEEEecCCCCCCceEEEEE-EeCCeeeeEEEEeCcEEEEcCCCc
Q psy1043 896 RCSTAKAYLRP---IIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVV-VKKGRKDPVLVRARREVILSAGAI 964 (1306)
Q Consensus 896 ~~~~~~~~L~~---~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~-~~~G~~~~~~v~A~k~VVLAAGai 964 (1306)
++....+++.| .++.+||.+..+++|+.|.++..+ ....|++++ ..+|....+.+..+.-|++.-|++
T Consensus 202 ~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~-~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 202 KYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITG-DKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccC-CCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCcc
Confidence 44444444444 456899999999999999998643 345677877 678887766777777677777765
No 458
>PRK14727 putative mercuric reductase; Provisional
Probab=96.36 E-value=0.0032 Score=77.69 Aligned_cols=35 Identities=20% Similarity=0.386 Sum_probs=32.5
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
..||+||||+|++|..+|.+|++ .|.+|+|+|++.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~-~g~~v~~ie~~~ 49 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAE-HGARVTIIEGAD 49 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 46999999999999999999999 799999999873
No 459
>PRK10262 thioredoxin reductase; Provisional
Probab=96.36 E-value=0.0028 Score=73.88 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=31.4
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G 735 (1306)
..+||||||+|++|+.+|..|++ .|++|+|+|+.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~-~g~~~~~ie~~ 38 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAAR-ANLQPVLITGM 38 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHH-CCCCeEEEEee
Confidence 47999999999999999999999 49999999965
No 460
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=96.34 E-value=0.0029 Score=77.75 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHhCCCC--CEEEEEcCCCCC
Q psy1043 81 DFIVVGAGSAGAVVANRLSEIEN--WKILLLEAGGDE 115 (1306)
Q Consensus 81 DvIIVGsG~aG~~~A~rLae~~G--~~VLvLE~G~~~ 115 (1306)
+|||||||.+|+++|++|++ .| ++|+|||+.+..
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~-~G~~~~V~vlEa~~~~ 37 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHK-KGPDADITLLEASDRL 37 (451)
T ss_pred eEEEECCCHHHHHHHHHHHH-hCCCCCEEEEEcCCCC
Confidence 58999999999999999998 57 899999997654
No 461
>PLN02676 polyamine oxidase
Probab=96.33 E-value=0.0039 Score=76.66 Aligned_cols=38 Identities=34% Similarity=0.560 Sum_probs=33.8
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCC-EEEEECCCCCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNW-KVLLLEAGGEES 739 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~-~VlVLE~G~~~~ 739 (1306)
..+||||||+|++|+++|++|++. |. +|+|||+.....
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~G 63 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRIG 63 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCCC
Confidence 368999999999999999999995 98 699999987653
No 462
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=96.33 E-value=0.0034 Score=67.56 Aligned_cols=32 Identities=31% Similarity=0.569 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 81 DvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
||||||||+||+.+|.+|+. .+.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-PGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-TTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-CCCeEEEEeccc
Confidence 79999999999999999997 899999998764
No 463
>PRK06753 hypothetical protein; Provisional
Probab=96.32 E-value=0.0029 Score=75.51 Aligned_cols=33 Identities=24% Similarity=0.456 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCC
Q psy1043 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114 (1306)
Q Consensus 81 DvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~ 114 (1306)
||||||||++|+++|..|++ .|++|+|+|+.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~-~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE-QGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCc
Confidence 79999999999999999999 7999999999863
No 464
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.31 E-value=0.0033 Score=77.49 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=32.1
Q ss_pred ccEEEECCChhHHHHHHHHhCCC----CCEEEEEcCCCCC
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEIE----NWKILLLEAGGDE 115 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~~----G~~VLvLE~G~~~ 115 (1306)
.||||||||.+|+++|++|++ . |++|+|||+.+..
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~-~~~~~g~~v~vlE~~~r~ 41 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEK-EIPELPVELTLVEASDRV 41 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHh-cCCCCCCcEEEEEcCCcC
Confidence 689999999999999999998 5 8999999998654
No 465
>PRK07233 hypothetical protein; Provisional
Probab=96.29 E-value=0.0035 Score=76.58 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=32.0
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCCCC
Q psy1043 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDET 116 (1306)
Q Consensus 81 DvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~~ 116 (1306)
+|||||||.+|+++|+.|++ .|++|+|||+.+...
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~-~G~~v~vlE~~~~~G 35 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK-RGHEVTVFEADDQLG 35 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCcEEEEEeCCCCC
Confidence 58999999999999999999 799999999987654
No 466
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.27 E-value=0.021 Score=69.54 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHcC-CCCEEEEECCCC
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQ-KNWKVLLLEAGG 736 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~-~G~~VlVLE~G~ 736 (1306)
.|||||+|++|+.+|.+|.+. ++.+|+|+|+.+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 599999999999999999872 368999999986
No 467
>KOG1335|consensus
Probab=96.26 E-value=0.0034 Score=70.31 Aligned_cols=35 Identities=37% Similarity=0.628 Sum_probs=32.7
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
.+||+||||+|++|-+||.+.++ .|++...+|+..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQ-lGlkTacvEkr~ 72 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQ-LGLKTACVEKRG 72 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHH-hcceeEEEeccC
Confidence 47999999999999999999999 599999999964
No 468
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.25 E-value=0.0035 Score=77.13 Aligned_cols=33 Identities=36% Similarity=0.649 Sum_probs=31.4
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
+||+||||+|++|..+|.++++ .|++|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~-~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAD-YGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence 5999999999999999999999 79999999986
No 469
>PRK07846 mycothione reductase; Reviewed
Probab=96.23 E-value=0.0039 Score=76.13 Aligned_cols=32 Identities=25% Similarity=0.713 Sum_probs=28.0
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+||+||||+|++|..+|.++ .|++|+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~---~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF---ADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH---CCCeEEEEeCCC
Confidence 49999999999999988763 399999999963
No 470
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.22 E-value=0.0037 Score=76.44 Aligned_cols=31 Identities=26% Similarity=0.695 Sum_probs=27.2
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G 735 (1306)
+||+||||+|++|..+|.++ .|.+|+|+|++
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~---~g~~V~lie~~ 32 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF---ADKRIAIVEKG 32 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH---CCCeEEEEeCC
Confidence 59999999999999887554 49999999996
No 471
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.21 E-value=0.0072 Score=80.83 Aligned_cols=57 Identities=16% Similarity=0.117 Sum_probs=43.2
Q ss_pred hhhcCCCcEEEecceEEEEEecCCCCCCceEEEEEEe--CCeeeeEEEEeCcEEEEcCCCcchHHHhc
Q psy1043 906 PIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVK--KGRKDPVLVRARREVILSAGAIGSPQVYL 971 (1306)
Q Consensus 906 ~~~~~~g~~i~~~~~V~~I~~~~~~~~~~rv~GV~~~--~G~~~~~~v~A~k~VVLAAGai~sp~LLl 971 (1306)
..+++.|++|++++.|++|.-+ +++.+|++. +|... ++.++. |+++.|-.-...|+.
T Consensus 359 ~~L~~~GV~i~~~~~v~~i~g~------~~v~~V~l~~~~g~~~--~i~~D~-V~va~G~~Pnt~L~~ 417 (985)
T TIGR01372 359 AEARELGIEVLTGHVVAATEGG------KRVSGVAVARNGGAGQ--RLEADA-LAVSGGWTPVVHLFS 417 (985)
T ss_pred HHHHHcCCEEEcCCeEEEEecC------CcEEEEEEEecCCceE--EEECCE-EEEcCCcCchhHHHH
Confidence 3556789999999999998543 467778754 34444 788987 999999887777764
No 472
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.20 E-value=0.0046 Score=77.49 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=33.0
Q ss_pred CCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 700 ~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
....+|+|||||++|+++|+.|++. |++|+|+||.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccc
Confidence 3569999999999999999999994 99999999974
No 473
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.20 E-value=0.025 Score=67.72 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=35.3
Q ss_pred cccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHH
Q psy1043 283 PVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQIL 343 (1306)
Q Consensus 283 ~~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LL 343 (1306)
..+.+ |++|+.++.|+.|..+++ + .+|+. .++. .+.|++ ||+|+|+ +++.|+
T Consensus 143 ~~~~~-G~~i~~~~~V~~i~~~~~--~-~~v~t-~~g~--~~~a~~-vV~a~G~-~~~~l~ 194 (381)
T TIGR03197 143 AHAGI-RLTLHFNTEITSLERDGE--G-WQLLD-ANGE--VIAASV-VVLANGA-QAGQLA 194 (381)
T ss_pred hccCC-CcEEEeCCEEEEEEEcCC--e-EEEEe-CCCC--EEEcCE-EEEcCCc-cccccc
Confidence 34556 999999999999987654 3 33443 2332 378876 9999996 455443
No 474
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.20 E-value=0.0038 Score=73.43 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCCC
Q psy1043 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114 (1306)
Q Consensus 80 yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~ 114 (1306)
-||+|||||.+|+.+|+.||+ .|++|+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr-~Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAK-RGVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCcEEEEEccCc
Confidence 489999999999999999999 7999999998763
No 475
>PRK10262 thioredoxin reductase; Provisional
Probab=96.18 E-value=0.0037 Score=72.93 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=31.6
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
..+||||||+|++|+.+|..|++ .|++|+|+|+.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~-~g~~~~~ie~~ 38 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAAR-ANLQPVLITGM 38 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHH-CCCCeEEEEee
Confidence 57999999999999999999999 79999999965
No 476
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.14 E-value=0.0056 Score=79.88 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=33.0
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE 737 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 737 (1306)
..+||+|||||+||+++|++|++ .|++|+|+|+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-AGHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-CCCeEEEEecccc
Confidence 45899999999999999999999 5999999999864
No 477
>PLN02568 polyamine oxidase
Probab=96.11 E-value=0.006 Score=75.70 Aligned_cols=38 Identities=26% Similarity=0.511 Sum_probs=33.3
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCC-----CEEEEEcCCCCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIEN-----WKILLLEAGGDET 116 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G-----~~VLvLE~G~~~~ 116 (1306)
...||||||+|.+|+++|.+|++ .| ++|+|||+.....
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~-~g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYT-SSAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-cccccCCceEEEEeCCCCcC
Confidence 45799999999999999999997 45 8999999987643
No 478
>PRK07846 mycothione reductase; Reviewed
Probab=96.10 E-value=0.0059 Score=74.61 Aligned_cols=31 Identities=32% Similarity=0.795 Sum_probs=27.5
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
+||+||||+|++|..+|.++ .|+||+|+|++
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~---~G~~V~lie~~ 31 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF---ADKRIAIVEKG 31 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH---CCCeEEEEeCC
Confidence 49999999999999988773 49999999986
No 479
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.10 E-value=0.0059 Score=70.47 Aligned_cols=34 Identities=35% Similarity=0.576 Sum_probs=31.4
Q ss_pred CccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 702 ~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
+=+++|||+|++|++||+.||+. |++|.|+||.+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~-G~~v~LVEKep 157 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADM-GFKVYLVEKEP 157 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 34699999999999999999995 99999999987
No 480
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.09 E-value=0.0058 Score=74.72 Aligned_cols=31 Identities=32% Similarity=0.737 Sum_probs=27.1
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
+||+||||+|++|..+|.++ .|.||+|+|++
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~---~g~~V~lie~~ 32 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF---ADKRIAIVEKG 32 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH---CCCeEEEEeCC
Confidence 59999999999998887554 49999999976
No 481
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.08 E-value=0.0051 Score=75.80 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=31.1
Q ss_pred cEEEECCChHHHHHHHHHHcC-----CCCEEEEECCCCCCC
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQ-----KNWKVLLLEAGGEES 739 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~-----~G~~VlVLE~G~~~~ 739 (1306)
+|||||||++|+++|++|++. .|.+|+|||+.++..
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G 43 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG 43 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence 599999999999999999983 148999999987653
No 482
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.05 E-value=0.067 Score=62.91 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHhCCC-CCEEEEEcCCCCCC
Q psy1043 81 DFIVVGAGSAGAVVANRLSEIE-NWKILLLEAGGDET 116 (1306)
Q Consensus 81 DvIIVGsG~aG~~~A~rLae~~-G~~VLvLE~G~~~~ 116 (1306)
-+||||||.+|+.+|.+|+... +.+|+|||+-....
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl 41 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL 41 (405)
T ss_pred eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc
Confidence 4899999999999999999842 58999999997654
No 483
>PLN02676 polyamine oxidase
Probab=96.03 E-value=0.0064 Score=74.80 Aligned_cols=38 Identities=42% Similarity=0.559 Sum_probs=33.7
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCC-EEEEEcCCCCCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENW-KILLLEAGGDET 116 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~-~VLvLE~G~~~~ 116 (1306)
..+||||||+|.+|+++|.+|++ .|. +|+|||+.+...
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~-~g~~~v~vlE~~~~~G 63 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSE-AGIEDILILEATDRIG 63 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-cCCCcEEEecCCCCCC
Confidence 46899999999999999999999 688 699999987543
No 484
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=96.02 E-value=0.006 Score=74.90 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=31.7
Q ss_pred cEEEECCChHHHHHHHHHHcCCCCEEEEECCCCCCC
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEES 739 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~ 739 (1306)
+|+|||+|++|+++|++|++ .|++|+|||+.+...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~-~G~~v~vlE~~~~~G 35 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLAD-AGHTPIVLEARDVLG 35 (453)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCCC
Confidence 48999999999999999999 599999999987543
No 485
>KOG4716|consensus
Probab=96.02 E-value=0.0053 Score=67.45 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=32.8
Q ss_pred CCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 700 ~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
..+||.||||+|.+|+++|.++|.. |.+|.+||-=.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDfV~ 52 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADL-GAKVACLDFVK 52 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhc-CCcEEEEeecc
Confidence 4589999999999999999999995 99999999754
No 486
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.0058 Score=72.46 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=31.7
Q ss_pred EEEECCChhHHHHHHHHhCCCCCEEEEEcCCCCCC
Q psy1043 82 FIVVGAGSAGAVVANRLSEIENWKILLLEAGGDET 116 (1306)
Q Consensus 82 vIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~~~~ 116 (1306)
|+|+|+|.||+++|++||+ +|++|.|+|++++..
T Consensus 3 Vai~GaG~AgL~~a~~La~-~g~~vt~~ea~~~~G 36 (485)
T COG3349 3 VAIAGAGLAGLAAAYELAD-AGYDVTLYEARDRLG 36 (485)
T ss_pred EEEEcccHHHHHHHHHHHh-CCCceEEEeccCccC
Confidence 8999999999999999999 899999999998643
No 487
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=95.99 E-value=0.0061 Score=67.07 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=32.3
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
+|||+|||+|.||+++|.+|++ +|+++.++-+|-
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~-~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQ-AGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHh-cCCcEEEEeCCh
Confidence 5999999999999999999999 899999999884
No 488
>PRK05868 hypothetical protein; Validated
Probab=95.95 E-value=0.006 Score=72.66 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 81 DvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
||+|||+|++|+++|..|++ .|++|+|+|+.+
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~-~G~~v~viE~~~ 34 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGR-HGYSVTMVERHP 34 (372)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCC
Confidence 89999999999999999999 799999999985
No 489
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=95.94 E-value=0.0064 Score=72.11 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHcCCCCEEEEECCCC
Q psy1043 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736 (1306)
Q Consensus 703 yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~ 736 (1306)
.||+|||+|.+|+.+|+.||+ .|++|+|+|+.+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr-~G~~V~LiE~rp 33 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQ-AGVPVILYEMRP 33 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHh-CCCcEEEEeccc
Confidence 379999999999999999999 599999999876
No 490
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.88 E-value=0.0064 Score=75.67 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=30.7
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEA 111 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~ 111 (1306)
..|||||||||+||+.+|.+|++ .|++|+|+|.
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~-~G~~v~li~~ 243 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAAR-KGLRTAMVAE 243 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Confidence 47999999999999999999999 7999999974
No 491
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.88 E-value=0.0063 Score=75.78 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=31.3
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
..||++|||||++|+.+|.+|++ .|++|+|+|..
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~-~G~~v~li~~~ 243 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAAR-KGIRTGIVAER 243 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecC
Confidence 47999999999999999999999 79999999753
No 492
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.88 E-value=0.0064 Score=71.78 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=43.3
Q ss_pred ccCCCCeEEEeccEEEEEEecCCCCeEEEEEEEeCCeEEEEEEcceEEEccCCCCcHHHHHHh
Q psy1043 284 VKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLS 346 (1306)
Q Consensus 284 ~~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~~g~~~~v~A~k~VVLaAGai~Sp~LLl~S 346 (1306)
..++.|++++.++.|+++.++++ ++++|.... +....+.|++ ||||+|++-|..|+...
T Consensus 272 ~~~~~Gg~il~g~~V~~i~~~~~--~v~~V~t~~-g~~~~l~AD~-vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 272 RFEQLGGVMLPGDRVLRAEFEGN--RVTRIHTRN-HRDIPLRADH-FVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHCCCEEEECcEEEEEEeeCC--eEEEEEecC-CccceEECCE-EEEccCCCcCHHHHhhc
Confidence 34466889999999999888766 777766533 3234688877 99999998788876554
No 493
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.87 E-value=0.0083 Score=71.39 Aligned_cols=41 Identities=29% Similarity=0.435 Sum_probs=31.4
Q ss_pred CCCCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCCCCCC
Q psy1043 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESP 740 (1306)
Q Consensus 699 ~~~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~~~~ 740 (1306)
|+++|||||+|+|..-+.+|..||.. |++||.||+++++..
T Consensus 1 m~~~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYGg 41 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYGG 41 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSCG
T ss_pred CCccceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcCC
Confidence 45789999999999999999999995 999999999998754
No 494
>KOG4716|consensus
Probab=95.86 E-value=0.0066 Score=66.69 Aligned_cols=34 Identities=32% Similarity=0.505 Sum_probs=31.5
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
.+||.||||+|++|+++|.+.|. -|.+|.+|+.=
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~-~G~kV~~lDfV 51 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAAD-LGAKVACLDFV 51 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHh-cCCcEEEEeec
Confidence 57999999999999999999998 79999999854
No 495
>PRK12831 putative oxidoreductase; Provisional
Probab=95.85 E-value=0.0092 Score=73.05 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=32.7
Q ss_pred CCccEEEECCChHHHHHHHHHHcCCCCEEEEECCCCC
Q psy1043 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE 737 (1306)
Q Consensus 701 ~~yDvIVIGsG~aG~~aA~~Lae~~G~~VlVLE~G~~ 737 (1306)
...||+|||+|++|+++|++|++ .|++|+|+|+.+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~-~G~~V~v~e~~~~ 174 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAK-MGYDVTIFEALHE 174 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 45899999999999999999999 5999999999753
No 496
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.82 E-value=0.0086 Score=80.10 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=42.9
Q ss_pred cCCCCeEEEeccEEEEEEecCCCCeEEEEEEEe-CCeEEEEEEcceEEEccCCCCcHHHHHHhCC
Q psy1043 285 KTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVK-NHQRHVIRARKEVILSGGAVNSPQILMLSGI 348 (1306)
Q Consensus 285 ~~~~nl~I~~~~~V~~I~~d~~~~~~~GV~~~~-~g~~~~v~A~k~VVLaAGai~Sp~LLl~SGi 348 (1306)
.++.|++|++++.|++|.-+ + ++.+|++.. ++...++.++. |+++.|..-+..|+...|.
T Consensus 361 L~~~GV~i~~~~~v~~i~g~-~--~v~~V~l~~~~g~~~~i~~D~-V~va~G~~Pnt~L~~~lg~ 421 (985)
T TIGR01372 361 ARELGIEVLTGHVVAATEGG-K--RVSGVAVARNGGAGQRLEADA-LAVSGGWTPVVHLFSQRGG 421 (985)
T ss_pred HHHcCCEEEcCCeEEEEecC-C--cEEEEEEEecCCceEEEECCE-EEEcCCcCchhHHHHhcCC
Confidence 45668999999988888532 2 577777763 34445678876 8999998877777776654
No 497
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=95.82 E-value=0.0081 Score=75.30 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=33.3
Q ss_pred CCCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCCC
Q psy1043 77 YPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113 (1306)
Q Consensus 77 ~~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G~ 113 (1306)
.+.++|+|||||++|+++|..|++ .|++|+|+||.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r-~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKK-KGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHh-cCCeEEEEeccc
Confidence 467999999999999999999999 799999999874
No 498
>KOG0405|consensus
Probab=95.80 E-value=0.01 Score=65.67 Aligned_cols=34 Identities=32% Similarity=0.604 Sum_probs=32.2
Q ss_pred CCccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 78 ~~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
.+||++|||+|++|...|+|.++ .|.||.|+|..
T Consensus 19 k~fDylvIGgGSGGvasARrAa~-~GAkv~l~E~~ 52 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAAS-HGAKVALCELP 52 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHh-cCceEEEEecC
Confidence 58999999999999999999998 89999999976
No 499
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.77 E-value=0.042 Score=67.26 Aligned_cols=33 Identities=21% Similarity=0.446 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHcC-CCCEEEEECCCC
Q psy1043 704 DFVVVGGGSAGAVVARRLSEQ-KNWKVLLLEAGG 736 (1306)
Q Consensus 704 DvIVIGsG~aG~~aA~~Lae~-~G~~VlVLE~G~ 736 (1306)
.|||||+|++|+++|..|++. .+.+|+|+|+.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~ 35 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence 489999999999999999983 245999999986
No 500
>KOG2614|consensus
Probab=95.67 E-value=0.0099 Score=68.15 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHhCCCCCEEEEEcCC
Q psy1043 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112 (1306)
Q Consensus 79 ~yDvIIVGsG~aG~~~A~rLae~~G~~VLvLE~G 112 (1306)
+-+|||||||.+|++.|.-|++ .|++|+|+|+-
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r-~G~~v~VlE~~ 34 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHR-KGIDVVVLESR 34 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHH-cCCeEEEEeec
Confidence 3579999999999999999999 89999999984
Done!