RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1043
(1306 letters)
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 385 bits (990), Expect = e-120
Identities = 194/577 (33%), Positives = 277/577 (48%), Gaps = 55/577 (9%)
Query: 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG-DETDISDVPVLAAYLQLSG-LDW 135
EYD+++VG+GSAG+V+A RLS+ +L+LEAGG D + +P A+L DW
Sbjct: 6 MEYDYVIVGSGSAGSVLAARLSDAGL-SVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDW 64
Query: 136 SYKTEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHWESL-GNPGWGA 194
++TEP + WPRGKV+GGSS +N M+YVRG+ D++ W G PGW
Sbjct: 65 GFRTEPEP----HLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPY 120
Query: 195 AEALYYFKKSEDNRNQYLAETP-YHNSGGYLTVQEAPWHTPLAEAFVRGGEELGYE-NRD 252
+ L YFK++ED + +H GG L V P+A AF+ GE+LG+ D
Sbjct: 121 DDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFPTTPD 180
Query: 253 INGEYQTGFMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNRMAIG 312
NG Q GF T+ NG R S ++A+L+P RPNL + + V ++L++ R A+G
Sbjct: 181 PNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD-R-AVG 238
Query: 313 VEFVKNHQRH--VIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDLK-VGY 369
VE A +EV+L+ GA+NSP++L+LSGIGP DHL + GI + L VG
Sbjct: 239 VEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQ 298
Query: 370 NLQDHVGLGGFTFLINQPISLVQDRLESVQSVLNYAMMGNGPLTVMGGDRLESVQSVLNY 429
NLQDH+ + N +++ +G DR Y
Sbjct: 299 NLQDHLEIYVAF---------------EATEPTNDSVLSLFSKLGIGADR---------Y 334
Query: 430 AMMGNGPLTVMGGVEGLAFVNTKYAS-DGGNQIRKAHGLREDFYDEVYGPINNKDVWSAI 488
+ +GP G DG E +G ++
Sbjct: 335 LLTRDGPGATNHFEGGFVRSGPAGEYPDGQYHFAPLPLAIRAAGAE-HG-------FTLH 386
Query: 489 PMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIEGVKIILELSKTRSFRQYES 548
+RP+SRG + LRS +P + P I P Y S D G+++ E+ +
Sbjct: 387 VGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRK 446
Query: 549 RFHNIPFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDSEAVVDPRLRVHGI 608
P P T TD IR + T YHP+GTC+MG + V DP LRVHG+
Sbjct: 447 -AELAPGPRVT-----TDEDISAAIRFLARTAYHPMGTCRMG-SDPAAVVDDPYLRVHGL 499
Query: 609 GNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDMIKQD 645
NLRV+DAS+MPT N N +I + E+ +D I D
Sbjct: 500 ENLRVVDASVMPTSTGVNPNLTIIALAERAADHILGD 536
Score = 363 bits (934), Expect = e-112
Identities = 193/552 (34%), Positives = 253/552 (45%), Gaps = 74/552 (13%)
Query: 698 EMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE-ESPLSDIPCTYPALQTSP- 755
EM EYD+V+VG GSAG+V+A RLS+ VL+LEAGG PL +P Y L P
Sbjct: 3 EMKMEYDYVIVGSGSAGSVLAARLSDAGL-SVLVLEAGGPDRRPLIQMPAAYAFLMNGPR 61
Query: 756 LDWQYKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEAA-GNEG 814
DW ++TEP L GR WPRGKV+GGSS +N M+YVRG+ D+DAW G G
Sbjct: 62 YDWGFRTEPEP----HLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPG 117
Query: 815 WSYRDTLPYFIKSESVNISSLVD-SPYHGTQGPLSVEEFRYYSPVTEAFVESAGELGYEV 873
W Y D LPYF ++E + D +HG GPL V R +P+ AF+E+ +LG+
Sbjct: 118 WPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFPT 177
Query: 874 GDI-NGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDG 932
NG Q GF T+ NG R S A+AYL+P + RPNL + + R+ E
Sbjct: 178 TPDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD--- 234
Query: 933 QMRATGV-VVKKGRKDPVLVRARREVILSAGAI--------------------GSPQVYL 971
RA GV V A REV+L+AGAI G V
Sbjct: 235 --RAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGR 292
Query: 972 IPNEHTHYQVDLTDGPEW----PDIQLFFASAADNDDGGLF---NKRNNGLKDDYYAGV- 1023
+P + Q L + P + + G + G + + G
Sbjct: 293 LPGVGQNLQDHLEIYVAFEATEPTNDSVLSLFSKLGIGADRYLLTRDGPGATNHFEGGFV 352
Query: 1024 --------------FEPILYRDSI-------TLAPLLLRPRSRGRIKLRTADPLDHPMIR 1062
F P+ TL +RP+SRG + LR+ DP + P+I
Sbjct: 353 RSGPAGEYPDGQYHFAPLPLAIRAAGAEHGFTLHVGPMRPKSRGSVTLRSPDPDNRPVID 412
Query: 1063 PNYLYDEKDLKTLVEGAKIGYAITRTKAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQVR 1122
PNYL E D G ++ I A+ PG +D +R
Sbjct: 413 PNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAE---LAPGPR---VTTDEDISAAIR 466
Query: 1123 HYTMTIYHPVGTCKMGPDSDPGAVVD-PRLRVRGVAGLRVIDASIMPTIVSGNTNAPTIM 1181
T YHP+GTC+MG SDP AVVD P LRV G+ LRV+DAS+MPT N N I
Sbjct: 467 FLARTAYHPMGTCRMG--SDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIA 524
Query: 1182 IAEKACDLIKED 1193
+AE+A D I D
Sbjct: 525 LAERAADHILGD 536
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase. Choline dehydrogenase
catalyzes the conversion of exogenously supplied choline
into the intermediate glycine betaine aldehyde, as part
of a two-step oxidative reaction leading to the
formation of osmoprotectant betaine. This enzymatic
system can be found in both gram-positive and
gram-negative bacteria. As in Escherichia coli ,
Staphylococcus xylosus , and Sinorhizobium meliloti,
this enzyme is found associated in a transciptionally
co-induced gene cluster with betaine aldehyde
dehydrogenase, the second catalytic enzyme in this
reaction. Other gram-positive organisms have been shown
to employ a different enzymatic system, utlizing a
soluable choline oxidase or type III alcohol
dehydrogenase instead of choline dehydrogenase. This
enzyme is a member of the GMC oxidoreductase family
(pfam00732 and pfam05199), sharing a common
evoluntionary origin and enzymatic reaction with alcohol
dehydrogenase. Outgrouping from this model, Caulobacter
crescentus shares sequence homology with choline
dehydrogenase, yet other genes participating in this
enzymatic reaction have not currently been identified
[Cellular processes, Adaptations to atypical
conditions].
Length = 532
Score = 354 bits (910), Expect = e-109
Identities = 207/582 (35%), Positives = 284/582 (48%), Gaps = 74/582 (12%)
Query: 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDISDVP---------VLAAYLQLS 131
D+I++G GSAG+V+A RLSE + +L+LEAGG SD P LA
Sbjct: 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG-----SDYPWDLLIQMPAALAYPAGNK 55
Query: 132 GLDWSYKTEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHW-ESLGNP 190
+W Y+TEP M + R RGKV+GGSS +N M+Y RGN DY W + G
Sbjct: 56 RYNWIYETEPEPH----MNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGME 111
Query: 191 GWGAAEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPLAEAFVRGGEELGYE- 249
W A+ L Y+K+ E + E PY G + V+ P PL +AF+ G E GY
Sbjct: 112 SWDYADCLPYYKRLE---TTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNK 168
Query: 250 NRDINGEYQTGFMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNRM 309
D+NG Q GF TV NG R S ++A+L P RPNL + + VTK+ +
Sbjct: 169 TPDVNGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE--GNR 226
Query: 310 AIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDLK-VG 368
A GVEF K ++ A KEVILS GA+NSPQ+L LSGIG +HL ++GI+ L VG
Sbjct: 227 ATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVG 286
Query: 369 YNLQDHVGLGGFTFLINQPISLVQDRLESVQSVLNYAMMGN-GPLTVMGGDRLESVQSVL 427
NLQDH+ + QP+SL LN+ G + G +
Sbjct: 287 ENLQDHLEV-YVQHACKQPVSL--------YPSLNWLKQPFIGAQWLFGRKGAGASNHFE 337
Query: 428 NYAMMGNGPLTVMGGVEGLAFVNTKY------ASDGGNQIRKAHGLREDFYDEVYGPINN 481
+ + + + N +Y G + KAHG + GP
Sbjct: 338 GGGFVRSND--------DVDYPNIQYHFLPVAIRYDGTKAPKAHG-----FQVHVGP--- 381
Query: 482 KDVWSAIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIEGVKIILELSKTR 541
+ SRG +K++S++P + P I Y S D E +++ E+ K +
Sbjct: 382 ----------MYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQK 431
Query: 542 SFRQYESRFHNIPFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDSEAVVDP 601
+ Y P P TD + +R + T HP GTCKMGP +D +VVDP
Sbjct: 432 ALDPYRGG-EISPGPEVQ-----TDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDP 485
Query: 602 RLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDMIK 643
RVHG+ LRV+DASIMP I +GN NAPVIM+GEK +D+I+
Sbjct: 486 ETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIR 527
Score = 329 bits (845), Expect = e-100
Identities = 201/552 (36%), Positives = 276/552 (50%), Gaps = 89/552 (16%)
Query: 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESPLSDIPCTYPALQTSPL-----DW 758
D++++GGGSAG+V+A RLSE + VL+LEAGG + P D+ PA P +W
Sbjct: 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPW-DLLIQMPAALAYPAGNKRYNW 59
Query: 759 QYKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAW-EAAGNEGWSY 817
Y+TEP +N RR RGKV+GGSS +N M+Y RGN DY+ W + G E W Y
Sbjct: 60 IYETEPEPH----MNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDY 115
Query: 818 RDTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFRYYSPVTEAFVESAGELGYEVG-DI 876
D LPY+ + E+ + PY G GP+ V +P+ +AF+E+ E GY D+
Sbjct: 116 ADCLPYYKRLETTFGG---EKPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNKTPDV 172
Query: 877 NGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRA 936
NG RQ GF T+ NG R S A+AYL P + RPNL V + +++FE RA
Sbjct: 173 NGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN-----RA 227
Query: 937 TGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYLI----PNEH---------------- 976
TGV KKG + A +EVILSAGAI SPQ+ + EH
Sbjct: 228 TGVEFKKGGR-KEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVG 286
Query: 977 ----THYQVDLTD--------------------GPEWPDIQLFF---ASAADNDDGGLFN 1009
H +V + G +W LF A A+++ +GG F
Sbjct: 287 ENLQDHLEVYVQHACKQPVSLYPSLNWLKQPFIGAQW----LFGRKGAGASNHFEGGGFV 342
Query: 1010 KRNNGLKDDYYAGVFEPILYRDSITLAPL---------LLRPRSRGRIKLRTADPLDHPM 1060
+ N+ + F P+ R T AP + SRG +K+++ DP + P
Sbjct: 343 RSNDDVDYPNIQYHFLPVAIRYDGTKAPKAHGFQVHVGPMYSNSRGHVKIKSKDPFEKPE 402
Query: 1061 IRPNYLYDEKDLKTLVEGAKIGYAITRTKAMKRFN-PVLHNVTIPGCEHTTPLSDAYWEC 1119
I NY+ E+D + E ++ I + KA+ + + PG E T +
Sbjct: 403 IVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEIS----PGPEVQTDEEIDEF-- 456
Query: 1120 QVRHYTMTIYHPVGTCKMGPDSDPGAVVDPRLRVRGVAGLRVIDASIMPTIVSGNTNAPT 1179
VR + T HP GTCKMGP SD +VVDP RV G+ GLRV+DASIMP I +GN NAP
Sbjct: 457 -VRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPV 515
Query: 1180 IMIAEKACDLIK 1191
IM+ EKA D+I+
Sbjct: 516 IMMGEKAADIIR 527
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 312 bits (801), Expect = 2e-93
Identities = 144/325 (44%), Positives = 189/325 (58%), Gaps = 28/325 (8%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDISDVPV---------LAAYLQ 129
EYD+I++GAGSAG V+ANRLSE + +LLLEAGG D LA LQ
Sbjct: 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG-----PDYRWDFFIQMPAALAFPLQ 59
Query: 130 LSGLDWSYKTEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHWESL-G 188
+W+Y+TEP M + R PRGKV+GGSS +N M+Y+RGN DY++W L G
Sbjct: 60 GKRYNWAYETEPEPH----MNNRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPG 115
Query: 189 NPGWGAAEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQE-APWHTPLAEAFVRGGEELG 247
GW A+ L YFKK+E + E Y G L+V P PL +AFV G + G
Sbjct: 116 LEGWSYADCLPYFKKAE---TRDGGEDDYRGGDGPLSVTRGKPGTNPLFQAFVEAGVQAG 172
Query: 248 YE-NRDINGEYQTGFMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPK 306
Y D+NG Q GF TV NG R S ++A+L P RPNL I H+ ++L +
Sbjct: 173 YPRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFE-- 230
Query: 307 NRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDLK 366
+ A+GVE+ + R RAR+EVILS GA+NSPQ+L LSGIGP +HL ++GI + DL
Sbjct: 231 GKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLP 290
Query: 367 -VGYNLQDHVGLGGFTFLINQPISL 390
VG NLQDH+ + + QP+SL
Sbjct: 291 GVGENLQDHLEV-YIQYECKQPVSL 314
Score = 292 bits (751), Expect = 1e-86
Identities = 125/278 (44%), Positives = 160/278 (57%), Gaps = 22/278 (7%)
Query: 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESPLS---DIPC--TYPALQT 753
EYD++++G GSAG V+A RLSE + VLLLEAGG + +P +P LQ
Sbjct: 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFP-LQG 60
Query: 754 SPLDWQYKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEA-AGN 812
+W Y+TEP +N RR PRGKV+GGSS +N M+Y+RGN DYD W G
Sbjct: 61 KRYNWAYETEPEP----HMNNRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGL 116
Query: 813 EGWSYRDTLPYFIKSESVNISSLVDSPYHGTQGPLSVEE-FRYYSPVTEAFVESAGELGY 871
EGWSY D LPYF K+E+ + + Y G GPLSV +P+ +AFVE+ + GY
Sbjct: 117 EGWSYADCLPYFKKAETRDGG---EDDYRGGDGPLSVTRGKPGTNPLFQAFVEAGVQAGY 173
Query: 872 EV-GDINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGP 930
D+NG +Q GF T+ NG R S A+AYL P + RPNL + H+ R+ FE
Sbjct: 174 PRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGK- 232
Query: 931 DGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQ 968
RA GV ++G RARREVILSAGAI SPQ
Sbjct: 233 ----RAVGVEYERGGG-RETARARREVILSAGAINSPQ 265
Score = 185 bits (472), Expect = 1e-49
Identities = 86/209 (41%), Positives = 110/209 (52%), Gaps = 31/209 (14%)
Query: 985 DGPEWPDIQLFFASAADNDDGGLFNKRNNGLKDD-YYAGVFEPILYRDSITLAPLLLRPR 1043
G +WP+IQ F A DG +N +K + A V P+ R
Sbjct: 353 AGVDWPNIQYHFLPVAIRYDG------SNAVKGHGFQAHV------------GPM--RSP 392
Query: 1044 SRGRIKLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKIGYAITRTKAMKRFN-PVLHNVT 1102
SRG +KL++ADP HP I NY+ E+D + + ++ I A+ + +
Sbjct: 393 SRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREIS--- 449
Query: 1103 IPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCKMGPDSDPGAVVDPRLRVRGVAGLRVI 1162
PG + T D + VR + T YHP TCKMG D P AVVDP RV GV GLRV+
Sbjct: 450 -PGADVQT---DEEIDAFVREHAETAYHPSCTCKMGTD--PMAVVDPEGRVHGVEGLRVV 503
Query: 1163 DASIMPTIVSGNTNAPTIMIAEKACDLIK 1191
DASIMPTI +GN NAPTIMIAEKA DLI+
Sbjct: 504 DASIMPTITNGNLNAPTIMIAEKAADLIR 532
Score = 161 bits (410), Expect = 2e-41
Identities = 64/153 (41%), Positives = 86/153 (56%), Gaps = 10/153 (6%)
Query: 492 LRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIEGVKIILELSKTRSFRQYESRFH 551
+R SRG +KL+S +P +P I Y S D + +++ E+ + Y R
Sbjct: 389 MRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPY--RGR 446
Query: 552 NI-PFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDSEAVVDPRLRVHGIGN 610
I P + TD + +R ++ T YHP TCKMG TD AVVDP RVHG+
Sbjct: 447 EISPGADVQ-----TDEEIDAFVREHAETAYHPSCTCKMG--TDPMAVVDPEGRVHGVEG 499
Query: 611 LRVIDASIMPTIVSGNTNAPVIMIGEKGSDMIK 643
LRV+DASIMPTI +GN NAP IMI EK +D+I+
Sbjct: 500 LRVVDASIMPTITNGNLNAPTIMIAEKAADLIR 532
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model
describes a set of dehydrogenases belonging to the
glucose-methanol-choline oxidoreductase (GMC
oxidoreductase) family. Members of the present family are
restricted to Actinobacterial genome contexts containing
also members of families TIGR03962 and TIGR03969 (the
mycofactocin system), and are proposed to be uniform in
function.
Length = 487
Score = 263 bits (673), Expect = 6e-77
Identities = 175/527 (33%), Positives = 229/527 (43%), Gaps = 82/527 (15%)
Query: 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESPLSDIPC------TYPALQTSPLD 757
D +VVGGGSAG VVA RLSE + V +LEAG S +P P SP+
Sbjct: 2 DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPASPVV 61
Query: 758 WQYKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEAAGNEGWSY 817
W+Y E D R S RG+V+GGS +N + R D+DAW GWS+
Sbjct: 62 WRYGVELTDGP-----RRASAIVRGRVLGGSGAVNGGYFCRALPADFDAWPIP---GWSW 113
Query: 818 RDTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFRYYSPVTEAFVESAGELGY-EVGDI 876
D LP+F E+ D P HGT GP+ V ++ AFV +A G+ + D+
Sbjct: 114 DDVLPHFRAIET---DLDFDGPLHGTAGPIPVRRTAELDGISAAFVAAALGAGFGWIADL 170
Query: 877 NG---ERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQ 933
NG + TG + G R STA AYL P + RPNL V + R+ F
Sbjct: 171 NGSGPDAPTGVGAVPLNVDGGRRVSTAVAYLLPALKRPNLTVEADTRVVRILFSGT---- 226
Query: 934 MRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYLI----PNEHTHYQ--------- 980
RA GV V P +RA R V+L AGA+ S + L+ P E
Sbjct: 227 -RAVGVEVLGDG-GPRTLRADR-VVLCAGAVESAHLLLLSGIGPAEQLRAAGIAVVLDLP 283
Query: 981 --VDLTDGPEW------------PDIQLFFASAADNDDGGLFNKRNNGLKDDYYAGVFEP 1026
D D PEW PD + + D ++ Y F
Sbjct: 284 VGSDFVDHPEWVLPYRWRPTHDRPDTSPVLETVLNTAD----------IEIRPYTAGFTA 333
Query: 1027 ILY---RDSITLAPLLLRPRSRGRIKLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKIGY 1083
++ RD L L+RP SRGRI+L +ADP D P I Y D L GA + +
Sbjct: 334 LVPGSPRDDPHLGVALMRPHSRGRIRLASADPADPPRIEHRYDSSAADRAALRAGAALAH 393
Query: 1084 AITRTKAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCKMGPDSDP 1143
+ P E +A W V T H G+C+MG DP
Sbjct: 394 ELLG-----------SPELGPLLEPAVREGEASW---VLARLATSQHLCGSCRMGGRDDP 439
Query: 1144 GAVVDPRLRVRGVAGLRVIDASIMPTIVSGNTNAPTIMIAEKACDLI 1190
GAVVD R RVRGV GL V+D SI+P I S +A +M+AE+A + +
Sbjct: 440 GAVVDARCRVRGVEGLWVVDGSILPVIPSRGPHATAVMVAERAAEFL 486
Score = 176 bits (447), Expect = 5e-47
Identities = 103/308 (33%), Positives = 148/308 (48%), Gaps = 32/308 (10%)
Query: 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDISDVP-VLAAYLQL-----SGLD 134
D +VVG GSAG VVA RLSE + + +LEAG D S +P L L+L S +
Sbjct: 2 DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPASPVV 61
Query: 135 WSYKTE----PSSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHWESLGNP 190
W Y E P S + RG+V+GGS +N + R D++ W P
Sbjct: 62 WRYGVELTDGPRRASAIV---------RGRVLGGSGAVNGGYFCRALPADFDAW---PIP 109
Query: 191 GWGAAEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPLAEAFVRGGEELGY-E 249
GW + L +F+ E + + + P H + G + V+ ++ AFV G+
Sbjct: 110 GWSWDDVLPHFRAIETDLD---FDGPLHGTAGPIPVRRTAELDGISAAFVAAALGAGFGW 166
Query: 250 NRDING---EYQTGFMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPK 306
D+NG + TG V G R ST+ A+L P RPNL + + V ++L
Sbjct: 167 IADLNGSGPDAPTGVGAVPLNVDGGRRVSTAVAYLLPALKRPNLTVEADTRVVRILFS-G 225
Query: 307 NRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDLK 366
R A+GVE + + +RA + V+L GAV S +L+LSGIGP + L GI + DL
Sbjct: 226 TR-AVGVEVLGDGGPRTLRADR-VVLCAGAVESAHLLLLSGIGPAEQLRAAGIAVVLDLP 283
Query: 367 VGYNLQDH 374
VG + DH
Sbjct: 284 VGSDFVDH 291
Score = 101 bits (254), Expect = 3e-22
Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Query: 491 LLRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIEGVKIILELSKTRSFRQYESRF 550
L+RP SRGRI+L S +P D PRI+ Y S D L G + EL +
Sbjct: 349 LMRPHSRGRIRLASADPADPPRIEHRYDSSAADRAALRAGAALAHELLGS---------- 398
Query: 551 HNIPFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDSEAVVDPRLRVHGIGN 610
+ + T H G+C+MG D AVVD R RV G+
Sbjct: 399 ----PELGPLLEPAVREGEASWVLARLATSQHLCGSCRMGGRDDPGAVVDARCRVRGVEG 454
Query: 611 LRVIDASIMPTIVSGNTNAPVIMIGEKGSDMI 642
L V+D SI+P I S +A +M+ E+ ++ +
Sbjct: 455 LWVVDGSILPVIPSRGPHATAVMVAERAAEFL 486
>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domain found
associated with pfam00732.
Length = 139
Score = 172 bits (438), Expect = 9e-50
Identities = 59/145 (40%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 1042 PRSRGRIKLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKIGYAITRTKAMKRFNPVLHNV 1101
PRSRGR+ L ++DPL P+I PNYL D DL L ++ I A+ P
Sbjct: 1 PRSRGRVTLSSSDPLGLPVIDPNYLSDPADLAALRAALRLARRIL-AAALVELTPG---- 55
Query: 1102 TIPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCKMGPDSDPGAVVDPRLRVRGVAGLRV 1161
+ SD +R +T +HP+GTC+MG D D G VVDP LRV GV LRV
Sbjct: 56 PVEVVPGAAEASDDEILEYIRAAAVTSWHPMGTCRMGADPDDG-VVDPDLRVHGVDNLRV 114
Query: 1162 IDASIMPTIVSGNTNAPTIMIAEKA 1186
+DAS+ P+ SGN +AE+A
Sbjct: 115 VDASVFPSSPSGNPTLTIYALAERA 139
Score = 166 bits (423), Expect = 9e-48
Identities = 53/145 (36%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Query: 494 PRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIEGVKIILELSKTRSFRQYESRFHNI 553
PRSRGR+ L S +PL P I P Y SD D+ L +++ +
Sbjct: 1 PRSRGRVTLSSSDPLGLPVIDPNYLSDPADLAALRAALRLARRILAAA-----LVELTPG 55
Query: 554 PFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRV 613
P +D IR +VT +HP+GTC+MG + D VVDP LRVHG+ NLRV
Sbjct: 56 PVEVVPGAAEASDDEILEYIRAAAVTSWHPMGTCRMGADPDD-GVVDPDLRVHGVDNLRV 114
Query: 614 IDASIMPTIVSGNTNAPVIMIGEKG 638
+DAS+ P+ SGN + + E+
Sbjct: 115 VDASVFPSSPSGNPTLTIYALAERA 139
>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase. This family of
proteins bind FAD as a cofactor.
Length = 218
Score = 172 bits (437), Expect = 1e-48
Identities = 71/231 (30%), Positives = 102/231 (44%), Gaps = 39/231 (16%)
Query: 152 NRCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHWESL-GNPGWGAAEALYYFKKSEDNRNQ 210
R P G VGG S +N+ +R + W S G GWG + L Y K E
Sbjct: 17 RRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE----- 71
Query: 211 YLAETPYHNSGGYLTVQEA-PWHTPLAEAFVRGGEELGYE----NRDINGEYQTGFMVAQ 265
G L V +PL +A ++ EELGY R+ NG + GF
Sbjct: 72 -----------GPLGVTTKGIEESPLNQALLKAAEELGYPVEAVPRNSNGCHYCGFCGLG 120
Query: 266 GTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEF--VKNHQRHV 323
GA+ ST++ +L+P R NL I + K++I + A+GVE + +
Sbjct: 121 --CPTGAKQSTARTWLRPALER-NLRILTGAKAEKIIILGRGGRAVGVEARDGGGGIKRL 177
Query: 324 IRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDLKVGYNLQDH 374
I A KEV+++ GA+N+P +L+ SG+G H VG NLQ H
Sbjct: 178 ITAAKEVVVAAGALNTPPLLLRSGLGKNPH------------PVGKNLQLH 216
Score = 137 bits (346), Expect = 2e-36
Identities = 69/215 (32%), Positives = 96/215 (44%), Gaps = 33/215 (15%)
Query: 773 NGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWE-AAGNEGWSYRDTLPYFIKSESVN 831
NGRR P G +GG S +N +R D W G EGW Y D LPY K E
Sbjct: 15 NGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE--- 71
Query: 832 ISSLVDSPYHGTQGPLSV-EEFRYYSPVTEAFVESAGELGYEVG----DINGERQTGFTR 886
GPL V + SP+ +A +++A ELGY V + NG GF
Sbjct: 72 -------------GPLGVTTKGIEESPLNQALLKAAEELGYPVEAVPRNSNGCHYCGFCG 118
Query: 887 AHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKK-GR 945
G G + STA+ +LRP + R NL + + A ++ RA GV + G
Sbjct: 119 L-GC-PTGAKQSTARTWLRPALER-NLRILTGAKAEKIIILG---RGGRAVGVEARDGGG 172
Query: 946 KDPVLVRARREVILSAGAIGSPQVY----LIPNEH 976
L+ A +EV+++AGA+ +P + L N H
Sbjct: 173 GIKRLITAAKEVVVAAGALNTPPLLLRSGLGKNPH 207
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 117 bits (295), Expect = 5e-27
Identities = 148/594 (24%), Positives = 235/594 (39%), Gaps = 118/594 (19%)
Query: 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDISDVPVLAAY-LQLSGLDWSYK 138
YD+IVVG G+AG +A LS+ N+ +LLLE GG ++V L + + L+
Sbjct: 56 YDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLENFHIGLA------D 107
Query: 139 TEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHWESLGNPGWGAAEAL 198
T P+S S + + R +V+GG + +N Y R + GW A
Sbjct: 108 TSPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQ------KAGWDAK--- 158
Query: 199 YYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPLAEAFVRGGEEL--GYENRDINGE 256
+S + + P + APW L ++ + G G+ + G
Sbjct: 159 -LVNESYPWVERQIVHWP----------KVAPWQAALRDSLLEVGVSPFNGFTYDHVYGT 207
Query: 257 YQTGFMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNR--MAIGVE 314
G + + R+ A A L L + LH+ V K++ D + A GV
Sbjct: 208 KVGGTIFDEFGRRHTA------AELLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVI 261
Query: 315 FVK---NHQRHVIRARK--EVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDLKVGY 369
F N + + K E+ILS GA+ SPQ+L+LSGIGPK L I + +
Sbjct: 262 FKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNE--- 318
Query: 370 NLQDHVGLGGFTFLINQPIS--LVQDRLESVQSVLNYAMMGNGPLTVMG---------GD 418
HVG G + + P++ V + QS++ +G +T MG G
Sbjct: 319 ----HVGKG----MADNPMNSIFVPSKAPVEQSLIQ--TVG---ITKMGVYIEASSGFGQ 365
Query: 419 RLESVQSVLNYAMMGN--GPLTVMGGVEGLAFVNTKYASDGGNQIRKAHGLREDFY---- 472
+S+ ++ +M G L+ + + Y RK + E F
Sbjct: 366 SPDSIHC--HHGIMSAEIGQLSTIPPKQRTPEAIQAYIH------RKKNLPHEAFNGGFI 417
Query: 473 -DEVYGPINNKDVWSAIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIEGV 531
+++ GPI S G + L + N D P + YF D+ + G+
Sbjct: 418 LEKIAGPI----------------STGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGI 461
Query: 532 KIILELSKTRSFRQYES-------RFHNIPF-PNCTHIPMYTD--AYYECMIRHYSVTIY 581
+ I ++ KT F + + N+ N IP +T+ E + +TI+
Sbjct: 462 RTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPKHTNDTKSLEQFCKDTVITIW 521
Query: 582 HPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIG 635
H G C +G VVD +V G+ LRVID S N A V+M+G
Sbjct: 522 HYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMG 569
Score = 64.4 bits (157), Expect = 2e-10
Identities = 85/294 (28%), Positives = 130/294 (44%), Gaps = 76/294 (25%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESPLSDIPCTY------PALQTSPL 756
YD++VVGGG+AG +A LS+ N+ VLLLE GG P + ++ TSP
Sbjct: 56 YDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGG--VPFGNANVSFLENFHIGLADTSP- 110
Query: 757 DWQYKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEAAGNEGWS 816
T + +A + +G + R +V+GG + +NA Y R + R
Sbjct: 111 -----TSAS-QAFISTDGVIN--ARARVLGGGTCINAGFYSRASTR-------------- 148
Query: 817 YRDTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFRYY---SPVTEAFVESAGELGYEV 873
FI+ + + LV+ Y P + ++ +P A +S E+G V
Sbjct: 149 -------FIQKAGWD-AKLVNESY-----PWVERQIVHWPKVAPWQAALRDSLLEVG--V 193
Query: 874 GDINGERQTGFTRAH-------GTL--KNGLRCSTAK--AYLRPIIARPNLHVSLHSHAY 922
N GFT H GT+ + G R + A+ A P L V LH+
Sbjct: 194 SPFN-----GFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNP----NKLRVLLHATVQ 244
Query: 923 RVHFEPGPDGQMRATGVVVK--KGRKDPVLVRARR--EVILSAGAIGSPQVYLI 972
++ F+ + RATGV+ K G + + + E+ILSAGAIGSPQ+ L+
Sbjct: 245 KIVFDTS-GKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLL 297
Score = 52.9 bits (127), Expect = 9e-07
Identities = 43/155 (27%), Positives = 61/155 (39%), Gaps = 24/155 (15%)
Query: 1042 PRSRGRIKLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKIGYAITRTKAMKRFN------ 1095
P S G + L + D+P + NY +DL+ V G + I +T F
Sbjct: 424 PISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQT 483
Query: 1096 -------PVLHNVT-IPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCKMGPDSDPGAVV 1147
V N+ IP +HT C + +TI+H G C +G VV
Sbjct: 484 MEKVLNMSVKANINLIP--KHTNDTKSLEQFC--KDTVITIWHYHGGCHVG------KVV 533
Query: 1148 DPRLRVRGVAGLRVIDASIMPTIVSGNTNAPTIMI 1182
D +V GV+ LRVID S N A +M+
Sbjct: 534 DQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMM 568
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 44.8 bits (106), Expect = 2e-04
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE 737
EYD V+VG G AG+ ARRL+ + VL+LE G E
Sbjct: 3 EYDVVIVGAGPAGSSAARRLA-KAGLDVLVLEKGSE 37
Score = 34.4 bits (79), Expect = 0.36
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113
EYD ++VGAG AG+ A RL++ +L+LE G
Sbjct: 3 EYDVVIVGAGPAGSSAARRLAK-AGLDVLVLEKGS 36
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 41.9 bits (99), Expect = 0.001
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736
D VV+GGG G A L+ + V LLE G
Sbjct: 1 DVVVIGGGIVGLSTAYELARR-GLSVTLLERGD 32
Score = 35.4 bits (82), Expect = 0.14
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113
D +V+G G G A L+ + LLE G
Sbjct: 1 DVVVIGGGIVGLSTAYELAR-RGLSVTLLERGD 32
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 41.8 bits (99), Expect = 0.002
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE 737
EYD VV+G G AG V A R + Q KV L+E G
Sbjct: 4 EYDVVVIGAGPAGYVAAIRAA-QLGLKVALVEKGER 38
Score = 36.4 bits (85), Expect = 0.10
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113
EYD +V+GAG AG V A R +++ K+ L+E G
Sbjct: 4 EYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGE 37
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model
represents a subfamily which includes geranylgeranyl
reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 295
Score = 41.2 bits (97), Expect = 0.002
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESPLSDIPCT 747
YD VVVG G AGA A RL+ K +VLLLE ++S PC
Sbjct: 1 YDVVVVGAGPAGASAAYRLA-DKGLRVLLLE---KKSFPRYKPCG 41
Score = 31.1 bits (71), Expect = 3.1
Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLE 110
YD +VVGAG AGA A RL++ + ++LLLE
Sbjct: 1 YDVVVVGAGPAGASAAYRLAD-KGLRVLLLE 30
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 40.7 bits (95), Expect = 0.005
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736
+ D V++GGG G A L+E+ V +LEAG
Sbjct: 3 MKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGE 37
Score = 36.4 bits (84), Expect = 0.094
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113
+ D +++G G G A L+E + +LEAG
Sbjct: 3 MKMDVVIIGGGIVGLSAAYYLAE-RGADVTVLEAGE 37
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 39.9 bits (94), Expect = 0.009
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 702 EYDFVVVGGGSAGAVVARRLSE-QKNWKVLLLE 733
+YD V++GGG GA A LSE + + V LLE
Sbjct: 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLE 35
Score = 36.9 bits (86), Expect = 0.066
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIEN-WKILLLE 110
+YD +++G G GA A LSE E + LLE
Sbjct: 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLE 35
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 35.5 bits (83), Expect = 0.010
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 707 VVGGGSAGAVVARRLSEQKNWKVLLLEAG 735
+VG G +G V A L+ ++ VL+LE
Sbjct: 1 IVGAGLSGLVAAYLLA-KRGKDVLVLEKR 28
Score = 33.6 bits (78), Expect = 0.061
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 84 VVGAGSAGAVVANRLSEIENWKILLLEAGGD 114
+VGAG +G V A L++ +L+LE
Sbjct: 1 IVGAGLSGLVAAYLLAK-RGKDVLVLEKRDR 30
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 39.8 bits (94), Expect = 0.010
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEA---GGD 114
YD IV+GAG AG +A R + + K+ L+E GG
Sbjct: 4 QRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGLLGGT 42
Score = 39.4 bits (93), Expect = 0.013
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 698 EMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLE 733
YD +V+G G AG +A R + KV L+E
Sbjct: 1 TPAQRYDAIVIGAGQAGPPLAARAAG-LGMKVALIE 35
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 39.0 bits (92), Expect = 0.015
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735
+YD +V+G G AG V ARR ++ KV L+E G
Sbjct: 3 KYDVIVIGAGPAGYVAARRAAKLGK-KVALIEKG 35
Score = 36.7 bits (86), Expect = 0.085
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112
+YD IV+GAG AG V A R +++ K+ L+E G
Sbjct: 3 KYDVIVIGAGPAGYVAARRAAKLGK-KVALIEKG 35
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases, as
yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme activities
have been described, UbiB (which acts first at position
6, see TIGR01982), UbiH (which acts at position 4,) and
UbiF (which acts at position 5,). UbiH and UbiF are
similar to one another and form the basis of this
subfamily. Interestingly, E. coli contains another
hydroxylase gene, called visC, that is highly similar to
UbiF, adjacent to UbiH and, when mutated, results in a
phenotype similar to that of UbiH (which has also been
named visB). Several other species appear to have three
homologs in this family, although they assort themselves
differently on phylogenetic trees (e.g. Xylella and
Mesorhizobium) making it difficult to ascribe a specific
activity to each one. Eukaryotes appear to have only a
single homolog in this subfamily (COQ6,) which
complements UbiH, but also possess a non-orthologous
gene, COQ7 which complements UbiF [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 387
Score = 39.1 bits (92), Expect = 0.015
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESPLSDIP 745
D V+VGGG G +A L+ KV L+EA +P
Sbjct: 1 DIVIVGGGPVGLALALALARSGGLKVALIEATPLPAPADPGF 42
Score = 34.5 bits (80), Expect = 0.39
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112
D ++VG G G +A L+ K+ L+EA
Sbjct: 1 DIVIVGGGPVGLALALALARSGGLKVALIEAT 32
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 39.1 bits (91), Expect = 0.018
Identities = 17/32 (53%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLE 733
+YD ++VGG AG V+A+ LS+Q KVL+LE
Sbjct: 33 DYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLE 63
Score = 34.1 bits (78), Expect = 0.65
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLE 110
+YD I+VG AG V+A LS+ + K+L+LE
Sbjct: 33 DYDVIIVGGSIAGPVLAKALSK-QGRKVLMLE 63
>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide
oxidoreductase.
Length = 202
Score = 37.3 bits (87), Expect = 0.023
Identities = 27/142 (19%), Positives = 44/142 (30%), Gaps = 33/142 (23%)
Query: 216 PYHNSGGYLTVQEAPWHTPLA-------EAFVRGGEELGYE---NRDINGEYQTGFMVAQ 265
GG+ + L + + L + D E +G +A
Sbjct: 29 RGAQPGGHWR--KWYPFVRLHQPSFFYGDFGMPDLNALSIDTSPKWDGKAELASGAEIA- 85
Query: 266 GTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIR 325
A+L+ + R L I L + VT V D R V+ +R
Sbjct: 86 -------------AYLEDLARRYGLPIRLSTRVTAVERD-GGRFV-----VRLTDGETVR 126
Query: 326 ARKEVILSGGAVNSPQILMLSG 347
A V+ + GA + P+ G
Sbjct: 127 ADY-VVDATGAFSVPKPPGFPG 147
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 38.2 bits (89), Expect = 0.026
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
P YD VV+G G G A L+ + KV +LE
Sbjct: 2 PMYDVVVIGAGLNGLAAAALLA-RAGLKVTVLEK 34
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 37.7 bits (88), Expect = 0.028
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736
D V++GGG AG A RL+ + KV L+E G
Sbjct: 1 DVVIIGGGPAGLAAAIRLA-RLGLKVALIEREG 32
Score = 31.6 bits (72), Expect = 2.7
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113
D +++G G AG A RL+ + K+ L+E G
Sbjct: 1 DVVIIGGGPAGLAAAIRLARL-GLKVALIEREG 32
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family
of proteins contains FAD dependent oxidoreductases and
related proteins.
Length = 415
Score = 37.5 bits (88), Expect = 0.041
Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
Query: 704 DFVVVGGGSAG---AVVARRLSEQKNWKVLLLEAGG 736
D VVVGGG AG A+ A RL KVLL+E G
Sbjct: 1 DVVVVGGGPAGVAAAIAAARL----GAKVLLVERRG 32
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and rfbD.
It is known experimentally in E. coli, Mycobacterium
tuberculosis, and Klebsiella pneumoniae [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 377
Score = 37.1 bits (86), Expect = 0.053
Identities = 14/31 (45%), Positives = 26/31 (83%), Gaps = 1/31 (3%)
Query: 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLE 110
+D+I+VGAG +G V+AN L+++ N ++L++E
Sbjct: 2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVE 31
Score = 33.6 bits (77), Expect = 0.66
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLE 733
+D+++VG G +G V+A L+ Q N +VL++E
Sbjct: 2 FDYIIVGAGLSGIVLANILA-QLNKRVLVVE 31
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 37.3 bits (87), Expect = 0.054
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735
E+D +V+GGG GA +AR + + KV L+E G
Sbjct: 12 EFDVIVIGGGITGAGIARDAAGR-GLKVALVEKG 44
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 36.8 bits (86), Expect = 0.076
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 931 DGQMRATGVVVKKGRKDPVLVRARREVILSAG 962
D R GV ++ + V +RAR+ V+L+AG
Sbjct: 206 DDDGRVVGVEARRYGET-VAIRARKGVVLAAG 236
Score = 31.4 bits (72), Expect = 3.5
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 281 LQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVILSGG 335
L + I + T++++D R+ +GVE + + IRARK V+L+ G
Sbjct: 183 LAKRAAALGVQIRYDTRATRLIVDDDGRV-VGVEARRYGETVAIRARKGVVLAAG 236
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis,
outer membrane].
Length = 374
Score = 36.2 bits (84), Expect = 0.12
Identities = 11/32 (34%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEA 111
+D+++VGAG +GAV+A +++ ++L++E
Sbjct: 2 FDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEK 32
Score = 36.2 bits (84), Expect = 0.12
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
+D+++VG G +GAV+A + Q +VL++E
Sbjct: 2 FDYLIVGAGLSGAVIAEVAA-QLGKRVLIVEK 32
>gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777). This is a
family of eukaryotic proteins of unknown function. Some
of the proteins in this family are putative nucleic acid
binding proteins.
Length = 158
Score = 34.9 bits (80), Expect = 0.12
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 1199 GRERSRGQPTTNEGNERSREQPRTSEGNERSREQPRTNKENGRSRDRQADTESET 1253
GR RSR P + RSR + R ERSR + R + RSR S +
Sbjct: 2 GRSRSR-SPRRSRRRGRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRS 55
Score = 34.1 bits (78), Expect = 0.23
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 1200 RERSRGQPTTNEGNERSREQPRTSEGNERSREQPRTNKENGRS------RDRQADTESET 1253
R R RG+ + + ER RE+ R+ E + R R + R+ + RS R R
Sbjct: 11 RSRRRGRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRSRSRSPSRRR 70
Query: 1254 QPNKVPKALSKLFAKRLPEQKTPKKGLEGTT 1284
+ ++ KR ++ ++ LEG +
Sbjct: 71 DRKRERDKDAREPKKRERQKLIKEEDLEGKS 101
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 35.1 bits (81), Expect = 0.14
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
Y E D V+VG G +G A L++ K KV ++E
Sbjct: 15 YAESDVVIVGAGPSGLTAAYYLAK-KGLKVAIIER 48
Score = 32.8 bits (75), Expect = 0.82
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 77 YPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEA 111
Y E D ++VGAG +G A L++ + K+ ++E
Sbjct: 15 YAESDVVIVGAGPSGLTAAYYLAK-KGLKVAIIER 48
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This
model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This family
is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 35.4 bits (82), Expect = 0.18
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEA 111
D I+VG G G +A LS + KI L+EA
Sbjct: 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEA 31
Score = 31.5 bits (72), Expect = 2.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
D ++VGGG G +A LS K+ L+EA
Sbjct: 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEA 31
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 35.6 bits (83), Expect = 0.22
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
D ++GGG AGA +A L+ + W+V L EA
Sbjct: 262 DAAIIGGGIAGAALALALAR-RGWQVTLYEA 291
Score = 32.1 bits (74), Expect = 2.1
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEA 111
D ++G G AGA +A L+ W++ L EA
Sbjct: 262 DAAIIGGGIAGAALALALAR-RGWQVTLYEA 291
>gnl|CDD|236214 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
Length = 466
Score = 35.2 bits (82), Expect = 0.22
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 699 MYPEYDFVVVGGGSAG---AVVARRLSEQKNWKVLLLEAGGEE 738
M D +V+GGG+A A+ AR VLLLEA E
Sbjct: 1 MASMVDVLVIGGGNAALCAALAARE----AGASVLLLEAAPRE 39
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP
to RuBP, flavoprotein [Carbohydrate transport and
metabolism].
Length = 262
Score = 34.6 bits (80), Expect = 0.24
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 14/61 (22%)
Query: 674 RYMISQYRPDVEDLEHLIPDVPLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLE 733
R + +Y D+ D Y E D ++VG G +G A L++ KV + E
Sbjct: 15 RAITERYFEDLLD-------------YLESDVIIVGAGPSGLTAAYYLAK-AGLKVAIFE 60
Query: 734 A 734
Sbjct: 61 R 61
Score = 31.1 bits (71), Expect = 3.7
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 77 YPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEA 111
Y E D I+VGAG +G A L++ K+ + E
Sbjct: 28 YLESDVIIVGAGPSGLTAAYYLAK-AGLKVAIFER 61
>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 35.0 bits (81), Expect = 0.28
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 694 VPLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
YD +VGGG G +A L + ++ L+EA
Sbjct: 10 TLPSTRSLTYDVAIVGGGIVGLTLAAALKDS-GLRIALIEA 49
Score = 32.7 bits (75), Expect = 1.4
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 66 APESMNKAEPLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEA 111
A S YD +VG G G +A L + +I L+EA
Sbjct: 5 AATSPTLPSTRSLTYDVAIVGGGIVGLTLAAALKD-SGLRIALIEA 49
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Reviewed.
Length = 391
Score = 34.6 bits (80), Expect = 0.33
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESPLSDIPCTYPALQTS 754
D +VGGG GA +A L+ Q + V +LE +P + P ++ S
Sbjct: 6 TDIAIVGGGMVGAALALGLA-QHGFSVAVLE---HAAPAPFDADSQPDVRIS 53
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 34.6 bits (79), Expect = 0.36
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLE 733
YD +V+GGGS G ARR + K KV L+E
Sbjct: 49 YDLIVIGGGSGGMAAARRAARNK-AKVALVE 78
>gnl|CDD|234030 TIGR02834, spo_ytxC, putative sporulation protein YtxC. This
uncharacterized protein is part of a panel of proteins
conserved in all known endospore-forming Firmicutes
(low-GC Gram-positive bacteria), including
Carboxydothermus hydrogenoformans, and nowhere else
[Cellular processes, Sporulation and germination].
Length = 276
Score = 34.2 bits (79), Expect = 0.37
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Query: 979 YQVDLTDGPEWPDIQLFFASAADNDDGGLFNKRNNGLKDD---YYAG-VFEPILYRDSIT 1034
Y V++ D + + D L+++ L + VFE LY + I
Sbjct: 184 YFVEIQD-SRLEIVHIVV----DGGSFRLYDENGRDLSSEELVELIDEVFESGLYIEDIL 238
Query: 1035 LAPLL-LRPRSRGRIKLRTADPLDHPM 1060
++PL+ L P IK+ T DP DH
Sbjct: 239 ISPLISLAPEK---IKIHTDDP-DHNK 261
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 34.4 bits (79), Expect = 0.42
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLE 733
Y + D V+VG GSAG A LS+ N KV ++E
Sbjct: 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIE 123
Score = 32.9 bits (75), Expect = 1.1
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 77 YPEYDFIVVGAGSAGAVVANRLSEIENWKILLLE 110
Y + D ++VGAGSAG A LS+ N K+ ++E
Sbjct: 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIE 123
>gnl|CDD|183272 PRK11675, PRK11675, LexA regulated protein; Provisional.
Length = 90
Score = 31.5 bits (72), Expect = 0.52
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 1212 GNERSREQPRTSEGNERSRE-QPRTNKENGRSRDRQ 1246
+ER +P+T N SR+ Q R NK N RD+
Sbjct: 15 ADERRPGRPKT---NPLSRDEQLRINKRNQLKRDKV 47
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident bacteria
[Energy metabolism, Electron transport].
Length = 450
Score = 34.0 bits (78), Expect = 0.59
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
YD++V+GGGS G ARR +E K LL+EA
Sbjct: 2 HYDYLVIGGGSGGIASARRAAEH-GAKALLVEA 33
Score = 32.5 bits (74), Expect = 1.5
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEA---GGDETDISDVP 122
YD++V+G GS G A R +E K LL+EA GG ++ VP
Sbjct: 2 HYDYLVIGGGSGGIASARRAAEH-GAKALLVEAKKLGGTCVNVGCVP 47
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest light
for photosynthesis, and dissipate excess light energy
absorbed by the antenna pigments. The cyclisation of
lycopene (psi, psi-carotene) is a key branch point in
the pathway of carotenoid biosynthesis. Two types of
cyclic end groups are found in higher plant carotenoids:
the beta and epsilon rings. Carotenoids with two beta
rings are ubiquitous, and those with one beta and one
epsilon ring are common; however, carotenoids with two
epsilon rings are rare.
Length = 374
Score = 33.8 bits (78), Expect = 0.65
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 704 DFVVVGGGSAGAVVARRLSEQK-NWKVLLLEAG 735
D V+VG G AG ++A RL + + +VLL++AG
Sbjct: 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAG 33
>gnl|CDD|233523 TIGR01674, phage_lambda_G, phage minor tail protein G. This model
describes a family of bacteriophage proteins including G
of phage lambda. This protein has been described as
undergoing a translational frameshift at a Gly-Lys
dipeptide near the C-terminus of protein G from phage
lambda, with about 4 % efficiency, to produce tail
assembly protein G-T. The Lys of the Gly-Lys pair is the
conserved second-to-last residue of seed alignment for
this family [Mobile and extrachromosomal element
functions, Prophage functions].
Length = 138
Score = 32.2 bits (73), Expect = 0.73
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 9 AVKLGCWGPKKGATGRQMSGVAETI-----PSLAASAVSNVAWFAPLLAATVAFFQYGVK 63
A+ L W P K S TI + A++ LL+ +A
Sbjct: 61 AMSLWHWHPSKSLQNENASQDVATIQQEVMTTWPTEALAAAEEKVLLLSGMIAPVIDEAT 120
Query: 64 DSAPESMNKAEPLYPE 79
++A + AEP+ E
Sbjct: 121 ENAEDRGEPAEPVTAE 136
>gnl|CDD|181564 PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 33.2 bits (76), Expect = 0.82
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735
+YD VVGGG GA A ++Q V ++E G
Sbjct: 3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGG 35
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 33.3 bits (77), Expect = 0.83
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 703 YDFVVVGGGSAGAVVARRLSE--QKNWKVLLLEA 734
D ++VGGG AGA +A LS V L+EA
Sbjct: 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37
>gnl|CDD|192565 pfam10391, DNA_pol_lambd_f, Fingers domain of DNA polymerase
lambda. DNA polymerases catalyze the addition of dNMPs
onto the 3-prime ends of DNA chains. There is a general
polymerase fold consisting of three subdomains that have
been likened to the fingers, palm, and thumb of a right
hand. DNA_pol_lambd_f is the central three-helical
region of DNA polymerase lambda referred to as the F and
G helices of the fingers domain. Contacts with DNA
involve this conserved helix-hairpin-helix motif in the
fingers region which interacts with the primer strand.
This motif is common to several DNA binding proteins and
confers a sequence-independent interaction with the DNA
backbone.
Length = 52
Score = 29.4 bits (67), Expect = 1.1
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 347 GIGPK--DHLTDMGIKTIQDLK 366
G+GPK GI+T++DL+
Sbjct: 9 GVGPKTARKWYRQGIRTLEDLR 30
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 32.9 bits (76), Expect = 1.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQK-NWKVLLLE 733
YDFV++GGG G A +L E+ ++ +LE
Sbjct: 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLE 34
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 32.5 bits (75), Expect = 1.2
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLE 733
Y E D +VG G +G A L++ KV + E
Sbjct: 23 YLEVDVAIVGAGPSGLTAAYYLAK-AGLKVAVFE 55
>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family. This model
represents a subfamily of RNA splicing factors including
the Pad-1 protein (N. crassa), CAPER (M. musculus) and
CC1.3 (H.sapiens). These proteins are characterized by an
N-terminal arginine-rich, low complexity domain followed
by three (or in the case of 4 H. sapiens paralogs, two)
RNA recognition domains (rrm: pfam00706). These splicing
factors are closely related to the U2AF splicing factor
family (TIGR01642). A homologous gene from Plasmodium
falciparum was identified in the course of the analysis
of that genome at TIGR and was included in the seed.
Length = 457
Score = 32.9 bits (75), Expect = 1.2
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 1200 RERSRGQ-PTTNEGNERSREQPRTSEGNERSREQPRTNKENGRSRDRQADTESETQPNKV 1258
R R R +++G ERSR + R+ + + R R++ GRSR R + + ++
Sbjct: 7 RGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYRPRGDRS 66
Query: 1259 PKALSKLFAKRLPEQKTPKK 1278
+ + + E T +
Sbjct: 67 YRRDDRRSGRNTKEPLTEAE 86
Score = 31.4 bits (71), Expect = 4.1
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 1199 GRERSRGQPTTNEGNERSREQ--PRTSEGNERSREQPRTNKENGRSRDRQADTESETQP 1255
GRERSR + + + + R R++ R G RSR R + G R+ D S
Sbjct: 20 GRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYRPRGDRSYRRDDRRSGRNT 78
>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6. This
model represents the monooxygenase responsible for the
4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 32.8 bits (75), Expect = 1.3
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQ---KNWKVLLLEAGGEESPLSD 743
+D V+VGGG G +A L K+ KVLLL+A S
Sbjct: 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSR 44
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 32.7 bits (75), Expect = 1.3
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQ-KNWKVLLLE 733
E D +V+GGG+AG + A + E+ +VLLLE
Sbjct: 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLE 41
>gnl|CDD|176459 cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa. Pol IV, also
known as Pol kappa, DinB, and Dpo4, is a translesion
synthesis (TLS) polymerase. Translesion synthesis is a
process that allows the bypass of a variety of DNA
lesions. TLS polymerases lack proofreading activity and
have low fidelity and low processivity. They use
damaged DNA as templates and insert nucleotides opposite
the lesions. Known primarily as Pol IV in prokaryotes
and Pol kappa in eukaryotes, this polymerase has a
propensity for generating frameshift mutations. The
eukaryotic Pol kappa differs from Pol IV and Dpo4 by an
N-terminal extension of ~75 residues known as the
"N-clasp" region. The structure of Pol kappa shows DNA
that is almost totally encircled by Pol kappa, with the
N-clasp region augmenting the interactions between DNA
and the polymerase. Pol kappa is more resistant than Pol
eta and Pol iota to bulky guanine adducts and is
efficient at catalyzing the incorporation of dCTP.
Bacterial pol IV has a higher error rate than other
Y-family polymerases.
Length = 334
Score = 32.5 bits (75), Expect = 1.4
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 345 LSGIGPK--DHLTDMGIKTIQDL 365
+ G+G + L ++GIKTI DL
Sbjct: 176 IPGVGKVTAEKLKELGIKTIGDL 198
>gnl|CDD|235905 PRK06996, PRK06996, hypothetical protein; Provisional.
Length = 398
Score = 32.4 bits (74), Expect = 1.7
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 78 PEYDFIVVGAGSAGAVVAN---RLSEIENWKILLLEAGGDETDISDVPVLA 125
P++D +VGAG G +A R S I L++A +D +A
Sbjct: 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIA 60
Score = 30.8 bits (70), Expect = 5.3
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 701 PEYDFVVVGGGSAGAVVA---RRLSEQKNWKVLLLEAGGEESPLSD 743
P++D +VG G G +A R S + + L++A + +D
Sbjct: 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASAND 55
>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase.
Length = 487
Score = 32.4 bits (74), Expect = 1.7
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 10/49 (20%)
Query: 83 IVVGAGSAGAVVANRLSE--IENWKILLLEA----GG--DETDISDVPV 123
I+VGAG +G A LSE IE+ IL+LEA GG + + + V V
Sbjct: 30 IIVGAGMSGISAAKTLSEAGIED--ILILEATDRIGGRMRKANFAGVSV 76
>gnl|CDD|221684 pfam12641, Flavodoxin_3, Flavodoxin domain. This family represents
a flavodoxin domain.
Length = 159
Score = 31.4 bits (72), Expect = 1.7
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 60 YGVKDSAPE----SMNKAEPLYPEYDFIVVGA----GSAGAVVANRLSEIENWKILL--- 108
+ ++ P +A+ PEYD I +G G+ + LS ++N KI L
Sbjct: 16 EAIAEALPAEDCVYFGEAKTKLPEYDVIFIGFWVDKGTCDEEALDFLSTLKNKKIFLFGT 75
Query: 109 LEAGGDE 115
L AG D
Sbjct: 76 LGAGPDS 82
>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase. This model represents
a family of bacterial lycopene cyclases catalyzing the
transformation of lycopene to carotene. These enzymes
are found in a limited spectrum of alpha and gamma
proteobacteria as well as Flavobacterium.
Length = 370
Score = 32.1 bits (73), Expect = 1.9
Identities = 13/33 (39%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 704 DFVVVGGGSAGAVVARRLSEQK-NWKVLLLEAG 735
D ++VGGG AG ++A RL + ++++ ++EAG
Sbjct: 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAG 33
>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 557
Score = 32.3 bits (74), Expect = 2.0
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 935 RATGVVVKKGRKDPVLVRARREVILSAG 962
R TGV + + P L+RARR VIL++G
Sbjct: 240 RVTGVHAAESGE-PQLIRARRGVILASG 266
>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme is
involved in the biosynthesis of the thiamine precursor
thiazole, and is repressed by thiamine. This family
includes c-thi1, a Citrus gene induced during natural
and ethylene induced fruit maturation and is highly
homologous to plant and yeast thi genes involved in
thiamine biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Thiamine].
Length = 254
Score = 31.3 bits (71), Expect = 2.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 700 YPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLE 733
Y E D ++VG G +G A L++ KV +LE
Sbjct: 19 YAESDVIIVGAGPSGLTAAYYLAK-NGLKVCVLE 51
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 31.6 bits (72), Expect = 2.7
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEE 738
D +VG G AG +A L+ + V LLE E
Sbjct: 1 KMLDVAIVGAGPAGLALALALA-RAGLDVTLLERAPRE 37
>gnl|CDD|216489 pfam01419, Jacalin, Jacalin-like lectin domain. Proteins
containing this domain are lectins. It is found in 1 to
6 copies in these proteins. The domain is also found in
the animal prostatic spermine-binding protein.
Length = 132
Score = 30.3 bits (69), Expect = 2.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 824 FIKSESVNISSLVDSPYHGTQGPLSVEEF 852
+IK E V V+ HG +G L EEF
Sbjct: 26 YIKFEYVKGGGKVEGDEHGKKGGLGTEEF 54
>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional.
Length = 424
Score = 31.7 bits (72), Expect = 2.8
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 13/59 (22%)
Query: 692 PDVPLEEMYPEYDFVVVGGGSAGAVVARRLSE-----QKNW--------KVLLLEAGGE 737
P +EE FVVVGGG G A L++ +N KV +LEAG E
Sbjct: 163 PTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE 221
>gnl|CDD|131515 TIGR02462, pyranose_ox, pyranose oxidase. Pyranose oxidase (also
called glucose 2-oxidase) converts D-glucose and
molecular oxygen to 2-dehydro-D-glucose and hydrogen
peroxide. Peroxide production is believed to be
important to the wood rot fungi in which this enzyme is
found for lignin degradation.
Length = 544
Score = 31.8 bits (72), Expect = 2.8
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 582 HPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDM 641
H GT ++G + + V + +VH NL V +PT N + K ++
Sbjct: 480 HLAGTTRIGFD-EQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEY 538
Query: 642 IKQ 644
I
Sbjct: 539 IIN 541
Score = 31.8 bits (72), Expect = 2.9
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 298 VTKVLIDPKNRMAIGVEFVKN---HQRHVIRARKEVILSGGAVNSPQILMLSGIGP 350
T+++ + N I V++ R I+A V+ G AV++PQIL+ SG G
Sbjct: 237 CTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACG-AVHNPQILVNSGFGQ 291
>gnl|CDD|223466 COG0389, DinP, Nucleotidyltransferase/DNA polymerase involved in
DNA repair [DNA replication, recombination, and repair].
Length = 354
Score = 31.5 bits (72), Expect = 2.8
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 342 ILMLSGIGPKD--HLTDMGIKTIQDL 365
+L G+G L +GI TI DL
Sbjct: 178 VLEFWGVGKVTAEKLRRLGISTIGDL 203
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 31.9 bits (73), Expect = 2.9
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
D VVG G +G A L+ + VL+ EA
Sbjct: 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEA 44
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 31.7 bits (72), Expect = 3.0
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEES 739
D +VVG G AG V A L++ +VL+L+ GE++
Sbjct: 5 TADVIVVGAGLAGLVAAAELAD-AGKRVLILDQEGEQN 41
Score = 30.6 bits (69), Expect = 7.2
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDET 116
D IVVGAG AG V A L++ ++L+L+ G++
Sbjct: 5 TADVIVVGAGLAGLVAAAELAD-AGKRVLILDQEGEQN 41
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the E3
component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to have
distinct functions (ferric leghemoglobin reductase and
NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 31.5 bits (72), Expect = 3.4
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLE 733
YD +V+GGG G V A R + Q KV L+E
Sbjct: 1 AYDVIVIGGGPGGYVAAIRAA-QLGLKVALVE 31
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 31.2 bits (71), Expect = 3.5
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 62 VKDSAPESMNKAEPLY-----PEYDFIVVGAGSAGAVVANRLSE 100
V ++ E+++ P + D +VVG G AG VA ++SE
Sbjct: 6 VPETKKENLDFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSE 49
Score = 30.5 bits (69), Expect = 6.7
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 703 YDFVVVGGGSAGAVVARRLSE 723
D VVVGGG AG VA+++SE
Sbjct: 29 VDLVVVGGGPAGLAVAQQVSE 49
>gnl|CDD|219645 pfam07923, N1221, N1221-like protein. The sequences featured in
this family are similar to a hypothetical protein
product of ORF N1221 in the CPT1-SPC98 intergenic region
of the yeast genome. This encodes an acidic polypeptide
with several possible transmembrane regions.
Length = 293
Score = 31.1 bits (71), Expect = 3.8
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 14/47 (29%)
Query: 727 WKVLLLEAGGEES---------PLSDIPCTY-----PALQTSPLDWQ 759
WKVLLL+ GG L + P L SPLD+Q
Sbjct: 221 WKVLLLQFGGSSHLKEAKEFLRELHGLKKNMRSSSPPKLTASPLDYQ 267
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 31.0 bits (71), Expect = 4.1
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 7/37 (18%)
Query: 703 YDFVVVGGGSAG---AVVARRLSEQKNWKVLLLEAGG 736
YD +V+GGG+AG A+ A ++ +VLL++ G
Sbjct: 1 YDVIVIGGGAAGLMAAISAA----KRGRRVLLIDKGK 33
>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when
searched with a partial length search brings in proteins
with a dinucleotide-binding motif (Rossman fold) over
the initial 40 residues of the model, including
oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae [Unknown function, Enzymes of
unknown specificity].
Length = 400
Score = 31.0 bits (71), Expect = 4.3
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 706 VVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE 737
+++GGG+AG + A + + VLLLE +
Sbjct: 1 IIIGGGAAGLMAAITAAREGL-SVLLLEKNKK 31
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and conversion].
Length = 562
Score = 31.2 bits (71), Expect = 4.4
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLE 733
E+D VV+GGG AG A +E KV LL
Sbjct: 6 EFDVVVIGGGGAGLRAAIEAAE-AGLKVALLS 36
Score = 30.0 bits (68), Expect = 9.1
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLE 110
E+D +V+G G AG A +E K+ LL
Sbjct: 6 EFDVVVIGGGGAGLRAAIEAAE-AGLKVALLS 36
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 30.9 bits (71), Expect = 4.4
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735
EYD +V+G G G V A R + Q KV ++E
Sbjct: 4 EYDVIVIGAGPGGYVAAIRAA-QLGLKVAIVEKE 36
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 31.1 bits (71), Expect = 4.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESPLSD 743
+ ++D VVVGGG GA +A L+ Q +V LL P D
Sbjct: 2 YHMKFDVVVVGGGLVGASLALALA-QSGLRVALLAPRAPPRPADD 45
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 30.3 bits (69), Expect = 4.8
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 1200 RERSRGQPTTNEGNERSREQPRTSEGNERSREQPRTNKENGR---SRDRQADTESETQPN 1256
+++ + +G +S+++ R E + +RE+ R K G SR + +T+S+ +
Sbjct: 1 KKKKSSPKRS-KGMAKSKKKTR-EELDAEARERKRKKKHKGLKSGSRHNEGNTQSKGKGQ 58
Query: 1257 KVPKALSKLFAKR-----LPEQKTPKKGLEGTTKYKLSDM 1291
K ++ +K+ + E+ PKK + K KLS
Sbjct: 59 AQKKD-PRIGSKKPIPLGVEEKVKPKKKKPKSKKPKLSPE 97
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 30.9 bits (70), Expect = 5.3
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 697 EEMYPE-YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE 737
D ++G G +G A L + ++ E +
Sbjct: 2 TVGVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDD 43
>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 557
Score = 30.9 bits (70), Expect = 5.3
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Query: 935 RATGV-VVKKGRKDPVLVRARREVILSAGAIG 965
R GV VV+ GR VL+RARR V+L++G G
Sbjct: 240 RVVGVVVVRDGR--EVLIRARRGVLLASGGFG 269
>gnl|CDD|198453 cd10485, EphR_LBD_A7, Ligand Binding Domain of Ephrin type-A
Receptor 7. Ephrin receptors (EphRs) comprise the
largest subfamily of receptor tyrosine kinases (RTKs).
Class EphA receptors bind GPI-anchored ephrin-A ligands.
There are ten vertebrate EphA receptors (EphA1-10),
which display promiscuous interactions with six ephrin-A
ligands. EphA7 has been implicated in various cancers,
including prostate, gastic and colorectal cancers. EphRs
contain a ligand binding domain and two fibronectin
repeats extracellularly, a transmembrane segment, and a
cytoplasmic tyrosine kinase domain. Binding of the
ephrin ligand to EphR requires cell-cell contact since
both are anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling).
Length = 177
Score = 30.0 bits (67), Expect = 5.4
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 105 KILLLEAGGDETD---ISDVPVLAAYLQLSGLDWSYKTEPSSTSCLAMEHNRCNWPR 158
+++LL++ +T+ IS P + + ++SGLD +Y + C ME N+ NW R
Sbjct: 3 EVILLDSKAQQTELEWISSPP--SGWEEISGLDENYTPIRTYQVCQVMEPNQNNWLR 57
>gnl|CDD|183983 PRK13339, PRK13339, malate:quinone oxidoreductase; Reviewed.
Length = 497
Score = 30.8 bits (70), Expect = 5.5
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 70 MNKAEPLYPEYDFIVVGAGSAGAVVANRLSEIE-NWKILL---LEAGGDET 116
M K+E D ++VGAG L E++ +W I + L++ E+
Sbjct: 1 MAKSESK----DVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIES 47
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 30.7 bits (70), Expect = 5.6
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE 737
D VV+G G AG A +E KV ++E G
Sbjct: 1 DVVVIGSGLAGLAAALEAAEAGL-KVAVVEKGQP 33
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 30.9 bits (70), Expect = 5.8
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
D ++VG G AG A L + ++V +LEA
Sbjct: 9 DVIIVGAGLAGLSAAYELKKA-GYQVQILEA 38
>gnl|CDD|143451 cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like.
Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of
Pseudomonas sp. strain HR199 (CalB) which catalyzes the
NAD+-dependent oxidation of coniferyl aldehyde to
ferulic acid, and similar sequences, are present in this
CD.
Length = 434
Score = 30.5 bits (70), Expect = 6.2
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 197 ALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWH 232
ALYYF + + +++ L T SGG +T+ + H
Sbjct: 367 ALYYFGEDKAEQDRVLRRTH---SGG-VTINDTLLH 398
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 30.6 bits (70), Expect = 6.7
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 197 ALYYFKKSEDNRNQYLAETPYHNSGGY 223
ALY F + + + + LAET SGG
Sbjct: 359 ALYLFSEDKAVQERVLAETS---SGGV 382
>gnl|CDD|173915 cd02164, PPAT_CoAS, phosphopantetheine adenylyltransferase domain
of eukaryotic and archaeal bifunctional enzymes. The
PPAT domain of the bifunctional enzyme with PPAT and
DPCK functions. The final two steps of the CoA
biosynthesis pathway are catalyzed by phosphopantetheine
adenylyltransferase (PPAT) and dephospho-CoA (dPCoA)
kinase (DPCK). The PPAT reaction involves the reversible
adenylation of 4'-phosphopantetheine to form 3'-dPCoA
and PPi, and DPCK catalyses phosphorylation of the
3'-hydroxy group of the ribose moiety of dPCoA. In
eukaryotes the two enzymes are part of a large
multienzyme complex . Studies in Corynebacterium
ammoniagenes suggested that separate enzymes were
present, and this was confirmed through identification
of the bacterial PPAT/CoAD.
Length = 143
Score = 29.2 bits (66), Expect = 6.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 78 PEYDFIVVGAGS-AGAVVANR------LSEIENWKILLLEAGGDETDIS 119
P+ + IVV + GA+ NR LS +E + L++A D IS
Sbjct: 88 PDLEAIVVSPETYPGALKINRKREENGLSPLEIVVVPLVKADEDGEKIS 136
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene cyclases.
The plant lycopene epsilon cyclases also transform
neurosporene to alpha zeacarotene.
Length = 388
Score = 30.5 bits (69), Expect = 6.8
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735
D V+GGG AG +A L+ + +V L+E
Sbjct: 1 DLAVIGGGPAGLAIALELA-RPGLRVQLIEPH 31
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 30.8 bits (70), Expect = 7.0
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 1202 RSRGQPTTNEGNERSREQPRTSEGNERSREQPRTNKENGRSRDRQADTE---SETQPNKV 1258
R R + N RE E N R+R Q + R + TE ++ + +
Sbjct: 615 RDRNERRDTRDNRTRREGRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQA 674
Query: 1259 PKA 1261
P+
Sbjct: 675 PRR 677
Score = 30.4 bits (69), Expect = 8.9
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 1198 EGRE---RSRGQPTTNEGNERSREQPRTSEGNERSREQPRTNKENGRSRDRQADTESETQ 1254
E RE R+R Q R +Q +E R++++ + R R R + Q
Sbjct: 634 ENREENRRNRRQAQQQTAETRESQQAEVTE-KARTQDEQQQAPRRERQRRRNDEKRQAQQ 692
Query: 1255 PNKVP 1259
K
Sbjct: 693 EAKAL 697
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one C
subunit in the genome and that genome is lacking the F
subunit partner (also a thioredcxin reductase homolog)
that is usually found (TIGR03140).
Length = 555
Score = 30.5 bits (69), Expect = 7.3
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLE---AGGEESPLSDIPCTYPAL 751
YD +++GGG AG K L++E GG+ + S++ YP +
Sbjct: 5 YDLIIIGGGPAGLSAGIYAGRAK-LDTLIIEKDDFGGQITITSEV-VNYPGI 54
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 30.2 bits (69), Expect = 7.6
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735
+D +++GGG AG + A + + +VLL++ G
Sbjct: 4 FDVIIIGGGPAGLMAAISAA-KAGRRVLLIDKG 35
>gnl|CDD|233689 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model
represents a group of geranylgeranyl reductases specific
for the biosyntheses of bacteriochlorophyll and
chlorophyll. It is unclear whether the processes of
isoprenoid ligation to the chlorin ring and reduction of
the geranylgeranyl chain to a phytyl chain are
necessarily ordered the same way in all species (see
introduction to ) [Biosynthesis of cofactors, prosthetic
groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 388
Score = 30.1 bits (68), Expect = 7.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLE 733
YD V+GGG +GA A L+ + +LLE
Sbjct: 1 YDVAVIGGGPSGATAAETLARA-GIETILLE 30
>gnl|CDD|177739 PLN00128, PLN00128, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit.
Length = 635
Score = 30.2 bits (68), Expect = 8.0
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 26 MSGVAETIPSLAASAVSNVAWFAPLLAATVAFFQYGVKDSAPESMNKAEPLYPEYDFIVV 85
VA + LA+S+ S+ A L A FF G S+ ++ YD +VV
Sbjct: 3 RRCVARGLRLLASSSASSSLASASLRTALSRFFSTGGGRSSYTIVDH------TYDAVVV 56
Query: 86 GAGSAGAVVANRLSE 100
GAG AG A LSE
Sbjct: 57 GAGGAGLRAAIGLSE 71
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 30.2 bits (69), Expect = 8.1
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 705 FVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE 737
+VGGG AG A RL+++ +V + EA +
Sbjct: 2 IAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQ 33
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 30.0 bits (68), Expect = 8.5
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 703 YDFVVVGGGSAG---AVVARRLSEQKNWKVLLLEAGGE 737
YD +++GGG AG A+ A R KV+L+ GGE
Sbjct: 4 YDVIIIGGGPAGLTAAIYAAR----AGLKVVLILEGGE 37
>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 30.3 bits (69), Expect = 8.7
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 298 VTKVLIDPKNRMAIGVEF-VKNHQRHVIRARKEVILSGGAVN 338
+T +L+D NR+A V F V+ ++ +V +A+ ++ +GGA
Sbjct: 156 ITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196
>gnl|CDD|223643 COG0569, TrkA, K+ transport systems, NAD-binding component
[Inorganic ion transport and metabolism].
Length = 225
Score = 29.5 bits (67), Expect = 8.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 704 DFVVVGGGSAGAVVARRLSEQKN 726
+++G G G VAR LSE+ +
Sbjct: 2 KIIIIGAGRVGRSVARELSEEGH 24
>gnl|CDD|235118 PRK03348, PRK03348, DNA polymerase IV; Provisional.
Length = 454
Score = 29.9 bits (68), Expect = 9.3
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 344 MLSGIGP--KDHLTDMGIKTIQDL 365
L GIGP ++ L +GI+TI DL
Sbjct: 184 RLWGIGPVTEEKLHRLGIETIGDL 207
>gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional.
Length = 351
Score = 29.6 bits (67), Expect = 9.9
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLE 733
YD ++G G AG+ +AR L+ KV+ ++
Sbjct: 1 HYDVAIIGLGPAGSALARLLA--GKMKVIAID 30
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.412
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 67,673,520
Number of extensions: 6818298
Number of successful extensions: 6226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6084
Number of HSP's successfully gapped: 182
Length of query: 1306
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1198
Effective length of database: 6,147,370
Effective search space: 7364549260
Effective search space used: 7364549260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (28.8 bits)