RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1043
(1306 letters)
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 751 bits (1942), Expect = 0.0
Identities = 167/597 (27%), Positives = 280/597 (46%), Gaps = 63/597 (10%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDI--SDVPVLAAYLQLSG-LDW 135
++D++VVGAG+AG VVA RL+E + +L+LEAG + ++ ++ P+LA L + DW
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 136 SYKTEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHWESL-GNPGWGA 194
+Y T +PRG+++GGSS ++YM+ +RG+ D++ + ++ G+ GW
Sbjct: 62 NYTTTA----QAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 195 AEALYYFKKSEDN-------RNQYLAETPYHNSGGYLTVQEAPWHTPLAEAFVRGGEELG 247
+ +K+E H + G +++ + TPL + + +E
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQS 177
Query: 248 YE---NRDINGEYQTGFMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLID 304
E N D+ + G + +V NG R S+S A+L+P ++RPNL + +++ VTK++
Sbjct: 178 EEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNS 237
Query: 305 PKNRM-----AIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGI 359
+ + + A+KEV+LS G+V +P +L LSGIG ++ L+ +GI
Sbjct: 238 GTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGI 297
Query: 360 KTIQDLK-VGYNLQDHVGLGGFTFLINQPISLVQDRLESVQSVLNYAMMGNGPLTVMGGD 418
TI + VG NL DH+ L F +N + + + +
Sbjct: 298 DTIVNNPSVGRNLSDHLLLP-AAFFVNSNQTFD----NIFRDSSEFNVDL---------- 342
Query: 419 RLESVQSVLNYAMMGNGPLTVMGGVEGLAFVNTKYA----------SDGGNQIRKAHGLR 468
+ GPLT LA++ + G N
Sbjct: 343 --------DQWTNTRTGPLT-ALIANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETIFS 393
Query: 469 EDFYDEVYGPINNKDVWSAIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLI 528
++ + S L+ P +RG IKL + NP D P I P+Y S D+ T+I
Sbjct: 394 NQWFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMI 453
Query: 529 EGVKIILELSKTRSFRQYESRFHNIPFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCK 588
+ VK L +++ + R + + T DA E IR + TI+HPVGT
Sbjct: 454 QAVKSNLRFLSGQAWADFVIRPFDPRLRDPT-----DDAAIESYIRDNANTIFHPVGTAS 508
Query: 589 MGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDMIKQD 645
M P S VVDP L+V G+ LR++D SI+P + +T P+ ++G++G+D+IK D
Sbjct: 509 MSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIKAD 565
Score = 396 bits (1021), Expect = e-125
Identities = 89/283 (31%), Positives = 147/283 (51%), Gaps = 21/283 (7%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEES--PLSDIPCTYPALQTSP-LDW 758
++D+VVVG G+AG VVA RL+E + VL+LEAG + ++ P P L + DW
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 759 QYKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEA-AGNEGWSY 817
Y T G NGR +PRG+++GGSS ++ M+ +RG+ D+D + A G+EGW++
Sbjct: 62 NYTTTA----QAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 818 RDTLPYFIKSES-------VNISSLVDSPYHGTQGPLSVEEFRYYSPVTEAFVESAGELG 870
+ + K+E N S HGT G +S+ + +P+ + + + E
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQS 177
Query: 871 YEVG---DINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFE 927
E D+ G + + ++ NG R S++ AYLRP +RPNL V +++ ++
Sbjct: 178 EEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNS 237
Query: 928 PGPDG--QMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQ 968
+G R ++G V A++EV+LSAG++G+P
Sbjct: 238 GTTNGLPAFRCVEYAEQEGAP-TTTVCAKKEVVLSAGSVGTPI 279
Score = 294 bits (754), Expect = 4e-87
Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 24/212 (11%)
Query: 982 DLTDGPEWPDIQLFFASAADNDDGGLFNKRNNGLKDDYYAGVFEPILYRDSITLAPLLLR 1041
D GP + F+ + ++ +++ L+
Sbjct: 378 DPAAGPNSAHWETIFS-------------------NQWFHPAIPRPDTGSFMSVTNALIS 418
Query: 1042 PRSRGRIKLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKIGYAITRTKAMKRFNPVLHNV 1101
P +RG IKL T++P D P+I P YL E D+ T+++ K +A F +
Sbjct: 419 PVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADFVIRPFD- 477
Query: 1102 TIPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCKMGPDSDPGAVVDPRLRVRGVAGLRV 1161
P T DA E +R TI+HPVGT M P VVDP L+V+GV GLR+
Sbjct: 478 --PRLRDPT--DDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRI 533
Query: 1162 IDASIMPTIVSGNTNAPTIMIAEKACDLIKED 1193
+D SI+P + +T P ++ ++ DLIK D
Sbjct: 534 VDGSILPFAPNAHTQGPIYLVGKQGADLIKAD 565
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 727 bits (1879), Expect = 0.0
Identities = 164/607 (27%), Positives = 252/607 (41%), Gaps = 76/607 (12%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDIS---DVPVLAAYLQLSGLDW 135
+DF++VG G+AG VA RL+E N +L++EAG + P A L+ S DW
Sbjct: 6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDW 65
Query: 136 SYKTEPSSTSCLAMEHNRCNWP--RGKVVGGSSVLNYMLYVRGNRNDYNHWESLGNPGWG 193
+YKT ++ R P RGK +GGSS LNY +V G++ ++ WE G W
Sbjct: 66 AYKTTM----VRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWT 121
Query: 194 AAEALYYFKKSEDNR---NQYLAETPYHNSGGYLTVQEAPWH---TPLAEAFVRGGEELG 247
+ Y +KS Y E GG + + A P E + + +G
Sbjct: 122 WDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMG 181
Query: 248 YE-NRDINGEYQTGFMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPK 306
+I G T+ G R +FL VK +PN+ I H +++I+
Sbjct: 182 QPLIENIYDGEMDGLTHCCDTIYRGQRSG---SFL-FVKNKPNITIVPEVHSKRLIINEA 237
Query: 307 NRMAIGVEFV-KNHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDL 365
+R GV V A +EVILS G +P++LMLSGIGP L+ GI TI D
Sbjct: 238 DRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDS 297
Query: 366 K-VGYNLQDHVGLGGFTFLINQPISLVQDRLESVQSVLNYAMMGNGPLTVMGGDRLESVQ 424
+ VG NL DH G+ F + + L + +
Sbjct: 298 RHVGQNLMDHPGVP-FVLRVKDGFGMDDVLL---RHGPKRDAVV---------------- 337
Query: 425 SVLNYAMMGNGPLTVMGGVEGLAFVNTKYASDGGNQIRKAH------------------- 465
Y +GP+ G +E + F + + RKA
Sbjct: 338 --SAYNKNRSGPVG-SGLLELVGFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHFEL 394
Query: 466 ---GLREDFYDEVYGPINNKDVWSAIPMLLRPRSR-GRIKLRSRNPLDYPRIQPEYFSDH 521
+ + + D + + L+RP S G + L S +P P I +F++
Sbjct: 395 DFVCMFGTAFQWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFAND 454
Query: 522 HDMLTLIEGVKIILE-LSKTRSFRQYESRFHNIPFPNCTHIPMYTDAYYECMIRHYSVTI 580
D++ + EG++ + L K F+ + +P+ +D + T
Sbjct: 455 LDIIAMREGIRFSYDLLFKGEGFKDLVESEY---PW---EMPLDSDKEMHRAVLDRCQTA 508
Query: 581 YHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSD 640
+HP GT ++ D + VVDP+L+VHGI LRV DAS++P I V +GEK +D
Sbjct: 509 FHPTGTARLSKNID-QGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCAD 567
Query: 641 MIKQDWR 647
MIK + +
Sbjct: 568 MIKAEHK 574
Score = 368 bits (947), Expect = e-114
Identities = 80/279 (28%), Positives = 121/279 (43%), Gaps = 23/279 (8%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG---EESPLSDIPCTYPALQTSPLDW 758
+DFV+VGGG+AG VA RL+E N VL++EAG E+ P P + L+ S DW
Sbjct: 6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDW 65
Query: 759 QYKTEPNDRACLGLNGRRSNWP--RGKVIGGSSVLNAMLYVRGNRRDYDAWEAAGNEGWS 816
YKT + R P RGK +GGSS LN +V G++ +D WE G + W+
Sbjct: 66 AYKTTM----VRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWT 121
Query: 817 YRDTLPYFIKSES---VNISSLVDSPYHGTQGPLSVEEFRY---YSPVTEAFVESAGELG 870
+ +PY KS + + G GP+ + +P E ++ +G
Sbjct: 122 WDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMG 181
Query: 871 YE-VGDINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPG 929
+ +I G T T+ G R + + +PN+ + H+ R+
Sbjct: 182 QPLIENIYDGEMDGLTHCCDTIYRGQRSGSF----LFVKNKPNITIVPEVHSKRLIINE- 236
Query: 930 PDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQ 968
GV V + + A REVILS G +P+
Sbjct: 237 --ADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPK 273
Score = 269 bits (689), Expect = 3e-78
Identities = 54/231 (23%), Positives = 83/231 (35%), Gaps = 21/231 (9%)
Query: 966 SPQVYLIPNEHTHYQVDLTDGPEWPDIQLFFASAADNDDGGLFNKRNNGLKDDYYAGVFE 1025
+ + P P Q F G F F
Sbjct: 362 DKYLEKDAEYRKAKAANGGKDPFSPLGQPHFELDFVCMFGTAFQW------------HFP 409
Query: 1026 PILYRDSITLAPLLLRPRSR-GRIKLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKIGYA 1084
D +T+ L+RP S G + L +ADP P I N+ ++ D+ + EG + Y
Sbjct: 410 TPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFSYD 469
Query: 1085 I-TRTKAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCKMGPDSDP 1143
+ + + K + SD V T +HP GT ++ +
Sbjct: 470 LLFKGEGFKDLVESEYP---WEMPLD---SDKEMHRAVLDRCQTAFHPTGTARLSKN-ID 522
Query: 1144 GAVVDPRLRVRGVAGLRVIDASIMPTIVSGNTNAPTIMIAEKACDLIKEDW 1194
VVDP+L+V G+ LRV DAS++P I + EK D+IK +
Sbjct: 523 QGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAEH 573
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 725 bits (1874), Expect = 0.0
Identities = 138/617 (22%), Positives = 234/617 (37%), Gaps = 57/617 (9%)
Query: 57 FFQYGVKDSAPESMNKA-EPLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDE 115
+ D ++ + YD+I+ G G G VA +L+E K+L++E G E
Sbjct: 1 YLPAQQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60
Query: 116 TD---ISDVPVLAAYLQLSGLDWSYKTEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYML 172
++ I + P + + +D +Y T P + + N GK +GGS+++N
Sbjct: 61 SNDGAIIEDPNAYGQIFGTTVDQNYLTVP------LINNRTNNIKAGKGLGGSTLINGDS 114
Query: 173 YVRGNRNDYNHWESL-GNPGWGAAEALYYFKKSEDNRNQYLA--------ETPYHNSGGY 223
+ R ++ + WE + G GW Y KK+E R A H + G
Sbjct: 115 WTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGT 174
Query: 224 LTVQEAPW---HTPLAEAFVRGGEELGYE-NRDINGEYQTGFMVAQGTV-RNGARCSTSK 278
+ +P+ +A + LG +D + G + + N R ++
Sbjct: 175 VQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAAR 234
Query: 279 AFLQPVKTRPNLHISLHSHVTKVLIDP--KNRMAIGVEFVKN-HQRHVIRARKEVILSGG 335
A+L P R NL I V KVL A+GV F N + A+ EV+L+ G
Sbjct: 235 AWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAG 294
Query: 336 AVNSPQILMLSGIGPKDHLTDMGIKTIQDLKVGYNLQDHVGLGGFTFLINQPISLVQDR- 394
+ SP IL SGIG K L + + DL VG N+QD + + +
Sbjct: 295 SAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQDQTTTT-VSSRASSAGAGQGQAV 353
Query: 395 --LESVQSVLNYAMMGNGPLTVMGGDRLESVQSVLNYAMMGNGPLTVMGGVEGLAFVNTK 452
++ +YA L GG + + +
Sbjct: 354 FFANFTETFGDYAPQARDLLNTKLD--------------QWAEETVARGGFHNVTALKVQ 399
Query: 453 YASDGGNQIRKAHGLREDFYDEVYGPINNKDVWSAIPMLLRPRSRGRIKLRSRNPLDYPR 512
Y + R + + E++ K + L P +RG + + S +P +
Sbjct: 400 YEN-----YRNWLLDEDVAFAELFMDTEGK--INFDLWDLIPFTRGSVHILSSDPYLWQF 452
Query: 513 -IQPEYFSDHHDMLTLIEGVKIILELSKTRSFRQYESRFHNIPFPNCTHIPMYTDAYYEC 571
P++F + D+L K+ +L+ + ++Y + P + T + +
Sbjct: 453 ANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAG---ETLPGYNLVQNATLSQWSD 509
Query: 572 MIRHYSVTIYHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPV 631
+ +H V +C M + VVD +V+G LRVID SI PT VS +
Sbjct: 510 YVLQNFRPNWHAVSSCSMMSR-ELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIF 568
Query: 632 IMIGEKGSDMIKQDWRK 648
+ K +D I D+ K
Sbjct: 569 YGMALKVADAILDDYAK 585
Score = 653 bits (1686), Expect = 0.0
Identities = 136/595 (22%), Positives = 223/595 (37%), Gaps = 91/595 (15%)
Query: 680 YRPDVEDLEHLIPDVPLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEE- 738
D++ + P + YD+++ GGG G VA +L+E KVL++E G E
Sbjct: 2 LPAQQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYES 61
Query: 739 --SPLSDIPCTYPALQTSPLDWQYKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLY 796
+ + P Y + + +D Y T P +N R +N GK +GGS+++N +
Sbjct: 62 NDGAIIEDPNAYGQIFGTTVDQNYLTVP------LINNRTNNIKAGKGLGGSTLINGDSW 115
Query: 797 VRGNRRDYDAWEAA-GNEGWSYRDTLPYFIKSES--------VNISSLVDSPYHGTQGPL 847
R ++ D+WE G EGW++ + Y K+E+ + ++ HGT G +
Sbjct: 116 TRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTV 175
Query: 848 SVEEFRY---YSPVTEAFVESAGELGYEV-GDINGERQTGFTRAHGTL-KNGLRCSTAKA 902
+SP+ +A + + LG V D G + L +N +R A+A
Sbjct: 176 QSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARA 235
Query: 903 YLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAG 962
+L P R NL + +V F+ G +A GV + V A+ EV+L+AG
Sbjct: 236 WLLPNYQRSNLEILTGQMVGKVLFKQTASGP-QAVGVNFGTNKAVNFDVFAKHEVLLAAG 294
Query: 963 AIGSPQVYL---------------IP---------NEHTHYQVDLT-------------- 984
+ SP + L + N ++
Sbjct: 295 SAISPLI-LEYSGIGLKSVLDQANVTQLLDLPVGINMQDQTTTTVSSRASSAGAGQGQAV 353
Query: 985 --------------DGPEWPDIQLFFASAADNDDGGLFNKRNNGLKDDYYAGVFEPILYR 1030
+ + +L + GG N ++ + Y
Sbjct: 354 FFANFTETFGDYAPQARDLLNTKLDQWAEETVARGGFHNVTALKVQYENYRNWLLDEDVA 413
Query: 1031 D---------SITLAPLLLRPRSRGRIKLRTADPLDHP-MIRPNYLYDEKDLKTLVEGAK 1080
I L P +RG + + ++DP P + +E DL +K
Sbjct: 414 FAELFMDTEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASK 473
Query: 1081 IGYAITRTKAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCKMGPD 1140
+ +T AMK + T+PG + + W V +H V +C M
Sbjct: 474 LARDLTSQGAMKEYFAGE---TLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMSR 530
Query: 1141 SDPGAVVDPRLRVRGVAGLRVIDASIMPTIVSGNTNAPTIMIAEKACDLIKEDWG 1195
+ G VVD +V G GLRVID SI PT VS + +A K D I +D+
Sbjct: 531 -ELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYA 584
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 705 bits (1821), Expect = 0.0
Identities = 147/604 (24%), Positives = 237/604 (39%), Gaps = 54/604 (8%)
Query: 65 SAPESMNKAEPLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDIS---DV 121
+ P+ ++ D+I+ G G G A RL+E N +L++E+G E+D +
Sbjct: 10 TDPKDVSGRT-----VDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIED 64
Query: 122 PVLAAYLQLSGLDWSYKTEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNRNDY 181
+ S +D +Y+T LA + G +GGS+++N + R ++
Sbjct: 65 LNAYGDIFGSSVDHAYETVE-----LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQV 119
Query: 182 NHWESL-GNPGWGAAEALYYFKKSEDNRNQYLA--------ETPYHNSGGYLTV---QEA 229
+ WE++ GN GW Y ++E R H G +
Sbjct: 120 DSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTG 179
Query: 230 PWHTPLAEAFVRGGEELGYE-NRDINGEYQTGFMVAQGTV-RNGARCSTSKAFLQPVKTR 287
++P+ +A + E+ G +D G + T+ + R ++ +L P R
Sbjct: 180 DDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQR 239
Query: 288 PNLHISLHSHVTKVLIDPKNRM--AIGVEF-VKNHQRHVIRARKEVILSGGAVNSPQILM 344
PNL + +V KVL+ A+GVEF H + A+ EV+L+ G+ SP IL
Sbjct: 240 PNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILE 299
Query: 345 LSGIGPKDHLTDMGIKTIQDLKVGYNLQDHVGLGGFTFLINQPISLVQDRLESVQSVLNY 404
SGIG K L +GI T+ DL VG NLQD I +
Sbjct: 300 YSGIGMKSILEPLGIDTVVDLPVGLNLQDQTTAT-VRSRITSAGAG------------QG 346
Query: 405 AMMGNGPLTVMGGDRLESVQSVLNYAMMGNGPLTVMGGVEGLAFVNTKYASDGGNQIRKA 464
GD E +LN + V G F NT R
Sbjct: 347 QAAWFATFNETFGDYSEKAHELLNTKLEQWAEEAVARG----GFHNTTALLIQYENYR-- 400
Query: 465 HGLREDFYDEVYGPINNKDVWSAIPMLLRPRSRGRIKLRSRNP-LDYPRIQPEYFSDHHD 523
+ ++ V S L P +RG + + ++P L + P+YF + D
Sbjct: 401 DWIVNHNVAYSELFLDTAGVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELD 460
Query: 524 MLTLIEGVKIILELSKTRSFRQYESRFHNIPFPNCTHIPMYTDAYYECMIRHYSVTIYHP 583
+L ++ +S + + + Y + P + + I ++ YH
Sbjct: 461 LLGQAAATQLARNISNSGAMQTYFAG---ETIPGDNLAYDADLSAWTEYIPYHFRPNYHG 517
Query: 584 VGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDMIK 643
VGTC M P+ + VVD RV+G+ LRVID SI PT +S + + K SD I
Sbjct: 518 VGTCSMMPK-EMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAIL 576
Query: 644 QDWR 647
+D+
Sbjct: 577 EDYA 580
Score = 636 bits (1644), Expect = 0.0
Identities = 137/576 (23%), Positives = 217/576 (37%), Gaps = 90/576 (15%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEE---SPLSDIPCTYPALQTSPLDW 758
D+++ GGG G A RL+E N VL++E+G E P+ + Y + S +D
Sbjct: 19 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDH 78
Query: 759 QYKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEAA-GNEGWSY 817
Y+T L N + + G +GGS+++N + R ++ D+WE GNEGW++
Sbjct: 79 AYETVE-----LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNW 133
Query: 818 RDTLPYFIKSES--------VNISSLVDSPYHGTQGPLSVEEFRY---YSPVTEAFVESA 866
+ Y +++E + ++ HG G + YSP+ +A + +
Sbjct: 134 DNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAV 193
Query: 867 GELGYEV-GDINGERQTGFTRAHGTL-KNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRV 924
+ G D G + TL ++ +R A+ +L P RPNL V + +V
Sbjct: 194 EDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKV 253
Query: 925 HFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYL------------- 971
RA GV + + V A+ EV+L+AG+ SP + L
Sbjct: 254 LLSQNGTT-PRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTI-LEYSGIGMKSILEP 311
Query: 972 --IP---------NEHTHYQVDLT----------------------------DGPEWPDI 992
I N + E +
Sbjct: 312 LGIDTVVDLPVGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHELLNT 371
Query: 993 QLFFASAADNDDGGLFNKRNNGLKDDYYAGVFEPILYRD---------SITLAPLLLRPR 1043
+L + GG N ++ + Y + L P
Sbjct: 372 KLEQWAEEAVARGGFHNTTALLIQYENYRDWIVNHNVAYSELFLDTAGVASFDVWDLLPF 431
Query: 1044 SRGRIKLRTADP-LDHPMIRPNYLYDEKDLKTLVEGAKIGYAITRTKAMKRFNPVLHNVT 1102
+RG + + DP L H P Y +E DL ++ I+ + AM+ +
Sbjct: 432 TRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGET--- 488
Query: 1103 IPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCKMGPDSDPGAVVDPRLRVRGVAGLRVI 1162
IPG + W + ++ YH VGTC M P + G VVD RV GV GLRVI
Sbjct: 489 IPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPK-EMGGVVDNAARVYGVQGLRVI 547
Query: 1163 DASIMPTIVSGNTNAPTIMIAEKACDLIKEDWGVME 1198
D SI PT +S + +A K D I ED+ M+
Sbjct: 548 DGSIPPTQMSSHVMTVFYAMALKISDAILEDYASMQ 583
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 613 bits (1584), Expect = 0.0
Identities = 124/586 (21%), Positives = 218/586 (37%), Gaps = 102/586 (17%)
Query: 75 PLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDISDVPVLAAYLQLSGLD 134
L YD+++VG G++G +A LSE +K+L+LE G T +V ++ +
Sbjct: 22 ELEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQE 79
Query: 135 WSYKTEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHWESLGNPGWGA 194
KT + + + RG+V+GG+S++N +Y R N + Y+ W
Sbjct: 80 DDGKTPV----ERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSAS----GVDWDM 131
Query: 195 AEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPLAEAFVRGGEELGYENRDIN 254
++ ED Y + W + AF+ G + +
Sbjct: 132 DLVNQTYEWVEDTI-------VYKPNSQ-------SWQSVTKTAFLEAGVHPNH---GFS 174
Query: 255 GEYQTGFMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNRM-AIGV 313
+++ G + T N + L NL + +H+ V K++ + A GV
Sbjct: 175 LDHEEGTRITGSTFDNKGTRHAADELLNKGN-SNNLRVGVHASVEKIIFSNAPGLTATGV 233
Query: 314 EFV---KNHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDLK-VGY 369
+ + +R++ EVI+S G + +PQ+L+LSG+GP+ +L+ + I + VG
Sbjct: 234 IYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQ 293
Query: 370 NLQDHVGLGGFTFLINQPISLVQDRLESVQSVLNYAMMGNGPLTVMGGDRLESVQSVLNY 429
L D + ++L + +TV+G
Sbjct: 294 FL--------------------HDNPRNFINILPPNPIEPTIVTVLG------------- 320
Query: 430 AMMGNGPLTVMGGVEGLAFVNTKYASDGGNQIRKAHGLREDFYDEVYGPINNKDVWSAIP 489
+ N L F + F+ P+ N
Sbjct: 321 --ISNDFY--QCSFSSLPFTTPPFG----------------FFPSSSYPLPNSTFAHFAS 360
Query: 490 MLLRPRSRGRIKLR-SRNPLDYPRIQPEYFSDHHDMLTLIEGVKIILELSKTRSFRQYES 548
+ P S G + L+ S N P ++ Y+S+ D+ + G+K I EL T + + Y+
Sbjct: 361 KVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKV 420
Query: 549 R-------FHNIPFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDSEAVVDP 601
F+ + P DA +E R + +H G C +G V+D
Sbjct: 421 EDLPGVEGFNILGIPLPKDQ--TDDAAFETFCRESVASYWHYHGGCLVG------KVLDG 472
Query: 602 RLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDMIKQDWR 647
RV GI LRV+D S P + + +M+G I Q+
Sbjct: 473 DFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERS 518
Score = 562 bits (1452), Expect = 0.0
Identities = 117/562 (20%), Positives = 192/562 (34%), Gaps = 121/562 (21%)
Query: 693 DVPLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESPLSDIPCTYPALQ 752
D E+ YD+V+VGGG++G +A LSE +KVL+LE G + ++ +
Sbjct: 17 DATDLELEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVY 74
Query: 753 TSPLDWQYKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEAAGN 812
+ KT ++ + RG+V+GG+S++NA +Y R N Y A
Sbjct: 75 NLQQEDDGKTPV----ERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSAS----G 126
Query: 813 EGWSYRDTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFRYYSPVTEAFVESAGELGYE 872
W + E Y S AF+E+ +
Sbjct: 127 VDWDMDLVNQTYEWVEDTI-------VYKPNSQSWQ-------SVTKTAFLEAGVHPNH- 171
Query: 873 VGDINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDG 932
+ + + G T N A L NL V +H+ ++ F P
Sbjct: 172 --GFSLDHEEGTRITGSTFDNKGTRHAADELLNK-GNSNNLRVGVHASVEKIIFSNAP-- 226
Query: 933 QMRATGVVVKK--GRKDPVLVRARREVILSAGAIGSPQV----------YL----IP--- 973
+ ATGV+ + G VR++ EVI+SAG IG+PQ+ YL IP
Sbjct: 227 GLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVL 286
Query: 974 -------NEHTHYQVDL---TDGP-----------------------EWPDIQLFFASAA 1000
H + + + P + F ++
Sbjct: 287 SHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSS 346
Query: 1001 DNDDGGLFNKRNNGLKDDYYAGVFEPILYRDSITLAPLLLRPRSRGRIKLRT-ADPLDHP 1059
A + P S G + L++ ++ P
Sbjct: 347 SYPLPNS-----------------------TFAHFASKVAGPLSYGSLTLKSSSNVRVSP 383
Query: 1060 MIRPNYLYDEKDLKTLVEGAKIGYAITRTKAMKRFNP-------VLHNVTIPGCEHTTPL 1112
++ NY + DL V G K + T A+K + + + IP + T
Sbjct: 384 NVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQT-- 441
Query: 1113 SDAYWECQVRHYTMTIYHPVGTCKMGPDSDPGAVVDPRLRVRGVAGLRVIDASIMPTIVS 1172
DA +E R + +H G C + G V+D RV G+ LRV+D S P +
Sbjct: 442 DDAAFETFCRESVASYWHYHGGCLV------GKVLDGDFRVTGINALRVVDGSTFPYTPA 495
Query: 1173 GNTNAPTIMIAEKACDLIKEDW 1194
+ +M+ I ++
Sbjct: 496 SHPQGFYLMLGRYVGIKILQER 517
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 587 bits (1516), Expect = 0.0
Identities = 152/580 (26%), Positives = 236/580 (40%), Gaps = 80/580 (13%)
Query: 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDIS-DVPVLAAYLQLSGLDWS 136
P D ++VG GSAG+++A RLSE + ++LL+EAG + TD P LQ DW
Sbjct: 16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWD 75
Query: 137 YKTEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHW-ESLGNPGWGAA 195
Y+TE + +W RG+++GGSS L+ M Y+RG+ +D+ W ++ G+ WG
Sbjct: 76 YRTEAQA----GTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWD 131
Query: 196 EALYYFKKSEDNRNQYLAETPYHNSGGYLTV--QEAPWHTPLAEAFVRGGEELGY-ENRD 252
E L F+ ED+ L H GG L + PLA AF+ G LG
Sbjct: 132 ELLPVFQAIEDH---PLGGDGIHGKGGPLPIHLPADEVS-PLARAFIEAGASLGLPRLEG 187
Query: 253 INGEYQTGFMVAQGTVRNGARCSTSKAFLQP-VKTRPNLHISLHSHVTKVLIDPKNRMAI 311
N G +R+G R + + A+L V+ R NL I S V ++ ++
Sbjct: 188 HNSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE--GNQVR 245
Query: 312 GVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDLK-VGYN 370
+E V + A +++L GA+ SP +LM SGIGP D L G+ + D+ +G N
Sbjct: 246 SLEVVGRQGSAEVFAD-QIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRN 304
Query: 371 LQDHVGLGGFTFLINQPISLVQDRLESVQSVLNYAMMGNGPLTVMGGDRLESVQSVLNYA 430
LQDH+ G + +P
Sbjct: 305 LQDHLLGAGNLYAARKP------------------------------------------- 321
Query: 431 MMGNGPLTVMGGVEGLAFVNTKYASDGGN---QIRKAHGLREDFYDEVYGPINNKDVWSA 487
P + + E +A++ + G + E + +S
Sbjct: 322 ----VPPSRLQHSESMAYMRADSFTAAGQPEIVV---GCGVAPIVSESFPAPAAGSAYSL 374
Query: 488 IPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIEGVKIILELSKTRSFRQYE 547
+ + P SRG +++ D I P Y D ++ + +
Sbjct: 375 LFGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWR 434
Query: 548 SRFHNIPFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDSEAVVDPRLRVHG 607
R P + A + I +T +HP GTC+MG D +AVVD LR+
Sbjct: 435 EREL---LPG----TPNSAAEMDDFIARSVITHHHPCGTCRMGK--DPDAVVDANLRLKA 485
Query: 608 IGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDMIKQDWR 647
+ NL V+DASIMP + +G +A V+ I E +
Sbjct: 486 LDNLFVVDASIMPNLTAGPIHAAVLAIAETFARQYHHHHH 525
Score = 557 bits (1439), Expect = 0.0
Identities = 145/549 (26%), Positives = 220/549 (40%), Gaps = 97/549 (17%)
Query: 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE-ESPLSDIPCTYPALQTSPLDWQ 759
P D V+VGGGSAG+++A RLSE + +VLL+EAG E P P +PALQ DW
Sbjct: 16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWD 75
Query: 760 YKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAW-EAAGNEGWSYR 818
Y+TE G GR +W RG++IGGSS L+AM Y+RG+ D+ AW +A+G+ W +
Sbjct: 76 YRTEAQA----GTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWD 131
Query: 819 DTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFR-YYSPVTEAFVESAGELGY-EVGDI 876
+ LP F E L HG GPL + SP+ AF+E+ LG +
Sbjct: 132 ELLPVFQAIED---HPLGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPRLEGH 188
Query: 877 NGERQTGFTRAHGTLKNGLRCSTAKAYLRPII-ARPNLHVSLHSHAYRVHFEPGPDGQMR 935
N G T +++G R + A A+L + R NL + S R+ E +
Sbjct: 189 NSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGN-----Q 243
Query: 936 ATGVVVKKGRKDPVLVRARREVILSAGA-----------IG---------------SPQV 969
+ V + +++L AGA IG P +
Sbjct: 244 VRSLEVVGRQG--SAEVFADQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDI 301
Query: 970 -----------YLI--------PNEHTHYQV------DLTDGPEWPDIQLFFASAADNDD 1004
+ P+ H + D P+I + A +
Sbjct: 302 GRNLQDHLLGAGNLYAARKPVPPSRLQHSESMAYMRADSFTAAGQPEIVVGCGVAPIVSE 361
Query: 1005 GGLFNKRNNGLKDDYYAGVFEPILYRDSITLAPLLLRPRSRGRIKLRTADPLDHPMIRPN 1064
+ +L + P SRG +++ + D +I P
Sbjct: 362 SFPAPAAGSA------------------YSLLFGITHPTSRGSVRISGPELGDRLIIDPA 403
Query: 1065 YLYDEKDLKTLVEGAKIGYAITRTKAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQVRHY 1124
YL +D + + I + + PG ++ A + +
Sbjct: 404 YLQTGRDRERFRRALEASRTIGHRDELAGWRERELL---PGTPNS----AAEMDDFIARS 456
Query: 1125 TMTIYHPVGTCKMGPDSDPGAVVDPRLRVRGVAGLRVIDASIMPTIVSGNTNAPTIMIAE 1184
+T +HP GTC+MG D P AVVD LR++ + L V+DASIMP + +G +A + IAE
Sbjct: 457 VITHHHPCGTCRMGKD--PDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAE 514
Query: 1185 KACDLIKED 1193
Sbjct: 515 TFARQYHHH 523
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 586 bits (1512), Expect = 0.0
Identities = 172/589 (29%), Positives = 259/589 (43%), Gaps = 90/589 (15%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDISD-VPVLAAY-LQLSGLDWS 136
E+D+IVVG GSAGA VA RLSE + L+EAG D+ + + + + L SG DW
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 137 YKTEPSSTSCLAMEHN--RCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHWES-LGNPGWG 193
Y EP E+ R KV+GG S N + R D + WE+ G GW
Sbjct: 73 YPIEPQ-------ENGNSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWN 125
Query: 194 AAEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPLAEAFVRGGEELGY-ENRD 252
A A +K+ E N + P+H G + + P P A + E+ G +
Sbjct: 126 AEAAWPLYKRLETNE-DAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKF 184
Query: 253 INGEYQT-GFMVAQGTVR-NGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNRMA 310
G G Q R +G R S+S +++ P+ + N + +++ D R
Sbjct: 185 NTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADRR-C 243
Query: 311 IGVEFVKNH--QRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQDLK-V 367
GV+ V + H + AR EV+LS GA+++P++LMLSGIGP HL + GI+ + D V
Sbjct: 244 TGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGV 303
Query: 368 GYNLQDHVGLGGFTFLINQPISLVQDRLESVQSVLNYAMMGNGPLTVMGGDRLESVQSVL 427
G +LQDH + V+ + P+
Sbjct: 304 GEHLQDHP-----------------------EGVVQFEA--KQPMVAES----------T 328
Query: 428 NYAMMGNGPLTVMGGVEGLAFVNTKYASDGGN-QI------RKAHGLREDFYDEVYGPIN 480
+ E F T+ D + + + LR + G
Sbjct: 329 QWW-------------EIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENG--- 372
Query: 481 NKDVWSAIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSD--HHDMLTLIEGVKIILELS 538
+S P + RSRG ++LRSR+ D P + P YF+D HDM ++ G++ E++
Sbjct: 373 ----FSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIA 428
Query: 539 KTRSFRQYESRFHNIPFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKMGPETDSEAV 598
+ ++ R + P TD + IR T+YHPVGT +MG D +
Sbjct: 429 AQPAMAEWTGRELS-PGVEAQ-----TDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSP 482
Query: 599 VDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDMIKQDWR 647
+DP LRV G+ LRV DAS+MP V+ N N V+MIGE+ +D+I+
Sbjct: 483 LDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSARA 531
Score = 575 bits (1485), Expect = 0.0
Identities = 151/550 (27%), Positives = 228/550 (41%), Gaps = 89/550 (16%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE-ESPLSDIPCTY-PALQTSPLDWQ 759
E+D++VVGGGSAGA VA RLSE V L+EAG + + L S DW
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 760 YKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEA-AGNEGWSYR 818
Y EP + R KV+GG S N+ + R D D WEA G GW+
Sbjct: 73 YPIEPQEN-----GNSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAE 127
Query: 819 DTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFRYYSPVTEAFVESAGELGY-EVGDIN 877
P + + E+ N + D+P+HG GP+ + P A +++ + G
Sbjct: 128 AAWPLYKRLET-NEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNT 186
Query: 878 GERQT-GFTRAHGTLK-NGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMR 935
G G + +G R S++ +Y+ PI+ + N + A ++ F+ R
Sbjct: 187 GTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD----ADRR 242
Query: 936 ATGVVVKKGRK-DPVLVRARREVILSAGAIGSPQVYL--------------IP------- 973
TGV + + AR EV+LS GAI +P++ + I
Sbjct: 243 CTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPG 302
Query: 974 ---NEHTHYQVDLT------------------------DGPEWPDIQLFFASAADNDDGG 1006
+ H + + DG + PD+ + + S + +
Sbjct: 303 VGEHLQDHPEGVVQFEAKQPMVAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNT- 361
Query: 1007 LFNKRNNGLKDDYYAGVFEPILYRDSITLAPLLLRPRSRGRIKLRTADPLDHPMIRPNYL 1066
+G +L P + RSRG ++LR+ D D PM+ P Y
Sbjct: 362 ----LRHGYPTTENG-----------FSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYF 406
Query: 1067 YDE--KDLKTLVEGAKIGYAITRTKAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQVRHY 1124
D D++ +V G + I AM + + PG E +D + +R
Sbjct: 407 TDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELS---PGVEAQ---TDEELQDYIRKT 460
Query: 1125 TMTIYHPVGTCKMGPDSDPGAVVDPRLRVRGVAGLRVIDASIMPTIVSGNTNAPTIMIAE 1184
T+YHPVGT +MG D + +DP LRV+GV GLRV DAS+MP V+ N N +MI E
Sbjct: 461 HNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGE 520
Query: 1185 KACDLIKEDW 1194
+ DLI+
Sbjct: 521 RCADLIRSAR 530
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 524 bits (1351), Expect = e-173
Identities = 117/596 (19%), Positives = 199/596 (33%), Gaps = 89/596 (14%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG-DETDISDVPV----LAAYLQLS-- 131
YD+I+VGAG G + A+RLSE K+LLLE GG V ++ L
Sbjct: 7 PYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDI 65
Query: 132 -GLDWSYKTEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHWESLGNP 190
GL S T+ + G +VGG + +N LY N D++ +
Sbjct: 66 PGLFESLFTDSNP----FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS-----SSV 116
Query: 191 GWGA--AEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPLAEAFVRGGEELGY 248
GW + Y K L T + ++ G ++++ + ++G
Sbjct: 117 GWPSSWTNHAPYTSKLSSR----LPSTDHPSTDGQRYLEQSF---NVVSQLLKGQGYNQA 169
Query: 249 ENRDINGEYQTGFMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNR 308
D F + NG R +LQ RPN + V+ V+ +
Sbjct: 170 TINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN--GS 227
Query: 309 MAIGVEFVKNH----QRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQD 364
+GV+ + + VILS GA + +IL SGIGP D + +
Sbjct: 228 QILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAA 287
Query: 365 LK-----------VGYNLQDHVGLGGFTFLINQPISLVQDRLESVQSVLNYAMMGNGPLT 413
VG N QD+ + F + N+A + + P
Sbjct: 288 AALPPQNQWINLPVGMNAQDNPSIN-LVFTHPSIDAY-----------ENWADVWSNPRP 335
Query: 414 VMGGDRLESVQSVLNYAMMGNGPLTVMGGVEGLAFVNTKYASDGGNQIR--KAHGLREDF 471
Y +G + + S R +
Sbjct: 336 ADA----------AQYLANQSGVFA-GASPKLNFWRAY---SGSDGFTRYAQGTVRPGAA 381
Query: 472 YDEVYGPINNKDVWSA-IPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIEG 530
P N +++ + + +SRGRI + + L + P + + D L++
Sbjct: 382 SVNSSLPYNASQIFTITVYLSTGIQSRGRIGIDA--ALRGTVLTPPWLVNPVDKTVLLQA 439
Query: 531 VKIIL-ELSKTRSFRQYESRFHNIPFPNCTHIPMYTDAYYECMIRHYSVTIYHPVGTCKM 589
+ ++ + T T Y ++ H V + +
Sbjct: 440 LHDVVSNIGSIPGLTMI------------TPDVTQTLEEYVDAYDPATMNSNHWVSSTTI 487
Query: 590 GPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSDMIKQD 645
G AVVD ++V G NL ++DA I+P + +GN ++ E+ + I
Sbjct: 488 GSS-PQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILAL 542
Score = 304 bits (781), Expect = 4e-91
Identities = 68/281 (24%), Positives = 101/281 (35%), Gaps = 37/281 (13%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE-ESPLSDIPCTYPALQTSPL---- 756
YD+++VG G G + A RLSE KVLLLE GG P +S L
Sbjct: 7 PYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTY-VAPWATSSGLTKFD 64
Query: 757 ----DWQYKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEAAGN 812
T+ N + G ++GG + +N LY N D+ +
Sbjct: 65 IPGLFESLFTDSNP----FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS-----SS 115
Query: 813 EGW--SYRDTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEFRYYSPVTEAFVESAGELG 870
GW S+ + PY K S + + + T G +E+ V ++ G
Sbjct: 116 VGWPSSWTNHAPYTSKLSS-RLP---STDHPSTDGQRYLEQSF---NVVSQLLKGQGYNQ 168
Query: 871 YEVGDINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGP 930
+ D + F + NG R YL+ +ARPN + V
Sbjct: 169 ATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS- 227
Query: 931 DGQMRATGVVVKK---GRKDPVLVRARREVILSAGAIGSPQ 968
+ GV G + V + VILSAGA G+ +
Sbjct: 228 ----QILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSR 264
Score = 217 bits (554), Expect = 1e-60
Identities = 41/210 (19%), Positives = 68/210 (32%), Gaps = 33/210 (15%)
Query: 985 DGPEWPDIQLFFASAADNDDGGLFNKRNNGLKDDYYAGVFEPILYRDSITLAPLLLRPRS 1044
Q A + + L + + V+ L +S
Sbjct: 365 SDGFTRYAQGTVRPGAASVNSSLPYNASQI----FTITVY-------------LSTGIQS 407
Query: 1045 RGRIKLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKIGY-AITRTKAMKRFNPVLHNVTI 1103
RGRI + A ++ P +L + D L++ I + P
Sbjct: 408 RGRIGIDAALR--GTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMITPD------ 459
Query: 1104 PGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCKMGPDSDPGAVVDPRLRVRGVAGLRVID 1163
T + Y + TM H V + +G AVVD ++V G L ++D
Sbjct: 460 ---VTQT--LEEYVD-AYDPATMNSNHWVSSTTIGSS-PQSAVVDSNVKVFGTNNLFIVD 512
Query: 1164 ASIMPTIVSGNTNAPTIMIAEKACDLIKED 1193
A I+P + +GN + AE+A I
Sbjct: 513 AGIIPHLPTGNPQGTLMSAAEQAAAKILAL 542
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 178 bits (452), Expect = 1e-47
Identities = 98/533 (18%), Positives = 159/533 (29%), Gaps = 78/533 (14%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE---ESPLSDIPC------------ 746
VV+G G AV A RL E + L+LE G P +I C
Sbjct: 5 YVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWF 63
Query: 747 -TYPALQTSPLDWQYKTEPNDRACLGL----NGRRSNWPRGKVIGGSSVLNAMLYVRGNR 801
W N G+ N + + G+ +GG S++N + V R
Sbjct: 64 KNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKR 123
Query: 802 RDYDAWEAAGNEGWSYRDTLPYFIKSESVN----ISSLVDSPYHGTQGPLSVEEFRYYSP 857
++ S YF ++ S+ I + + E +
Sbjct: 124 SYFEEI---LPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAG 180
Query: 858 VTEAFVESAGELGYEVGDINGERQTGFTRA-HGTLKNGLRCSTAKAYLRPIIARPNLHVS 916
+ FV + + GY + GE N + S K YL + V+
Sbjct: 181 LGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGK--VT 238
Query: 917 LHSHAYRVHFEPGPDGQMRATGVVVK--KGRKDPVLVRARREVILSAGAIGSPQVYLIPN 974
+ + DG A V K G+ + R + L AG++GS ++ L+
Sbjct: 239 IQTLHQVKTIRQTKDGG-YALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTEL-LVRA 296
Query: 975 EHTHYQVDLTD--GPEW---PDIQLFFASAADNDDG--------GLFNKRNNGLKDDYYA 1021
T +L G W +I A+ N G + +N +
Sbjct: 297 RDTGTLPNLNSEVGAGWGPNGNIMTARANHMWNPTGAHQSSIPALGIDAWDNSDSSVFAE 356
Query: 1022 GVFEPILYRDSITLAPLLLRPRSRGRIKLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKI 1081
P ++L + + RG A D + + +
Sbjct: 357 IAPMPAGLETWVSLYLAITKNPQRGTFVYDAAT--DRAKLNWTRDQNAPAVNAAKALFD- 413
Query: 1082 GYAITRTKAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCKMGPDS 1141
G + L + + YHP+G C +G
Sbjct: 414 -----------------RINKANGTIYRYDLFGTQLKAFADDFC---YHPLGGCVLG--- 450
Query: 1142 DPGAVVDPRLRVRGVAGLRVIDASIMPTIVSGNTNAPTIMIAEKACDLI-KED 1193
D RV G L V D S++P V N +AE+ + I K+D
Sbjct: 451 ---KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQD 500
Score = 149 bits (377), Expect = 4e-38
Identities = 83/602 (13%), Positives = 149/602 (24%), Gaps = 148/602 (24%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDISDVPVLAA------------ 126
+V+G G AV A RL E + L+LE G +
Sbjct: 5 YVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWF 63
Query: 127 ----YLQLSGLDWSYK----TEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNR 178
L W +P + + +++ + G+ VGG S++N + V R
Sbjct: 64 KNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKR 123
Query: 179 NDYNHWESLGNPGWGAAEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPLAEA 238
+ + Y+ + A + + E A
Sbjct: 124 SYFEEILPRV--DSSEMYDRYFPR----------ANSMLRVNHIDTKWFEDTEWYKFARV 171
Query: 239 FVRGGEELGYENRDINGEYQTGFMVAQGTVR--------------NGARCSTSKAFLQPV 284
+ G + Y G+M + N + S K +L
Sbjct: 172 SREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAA 231
Query: 285 KTRPNLHISLHSHVTKVLIDPKNRMAIGVEFV----KNHQRHVIRARKEVILSGGAVNSP 340
+ I V + A+ VE K I R + L G++ S
Sbjct: 232 LGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCR-YLFLGAGSLGST 290
Query: 341 QILMLSGIGPKDHLTDMGIKTIQDLKVGYNLQDHVGLGGFTFLINQPISLVQDRLESVQS 400
++L+ + D NL VG G
Sbjct: 291 ELLVRAR----------------DTGTLPNLNSEVGAG---------------------- 312
Query: 401 VLNYAMMGNGPLTVMGGDRLESVQSVLNYAMMGNGPLTVMGGVEGLAFVNTKYASDGGNQ 460
N G+ + + + + + G++ + +
Sbjct: 313 -----WGPN-------GNIMTARANHMWNPTGAHQSSIPALGIDAW--------DNSDSS 352
Query: 461 IRKAHGLREDFYDEVYGPINNKDVWSAIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSD 520
+ + + + R KL + P +
Sbjct: 353 VFAEIAPMPAGLETWVSLYLAITKNPQRGTFVYDAATDRAKLNWTRDQNAPAVN------ 406
Query: 521 HHDMLTLIEGVKIILELSKTRSFRQYESRFHNIPFPNCTHIPMYTDAYYECMIRHYSVTI 580
L + + + + F C H
Sbjct: 407 --AAKALFDRINKANGTIYRYDLFGTQLKAFADDF--CYH-------------------- 442
Query: 581 YHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKGSD 640
P+G C +G D RV G NL V D S++P V N + + E+ +
Sbjct: 443 --PLGGCVLG------KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 641 MI 642
I
Sbjct: 495 RI 496
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 147 bits (372), Expect = 8e-37
Identities = 76/613 (12%), Positives = 164/613 (26%), Gaps = 60/613 (9%)
Query: 66 APESMNKAEPLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDISDVPVLA 125
P K + +YD ++VG+G G A L +K+ + + G ++ +
Sbjct: 33 LPGPDKKVPGMDIKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKK 91
Query: 126 AYLQLSGLDWSYKTEP-----SSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNRND 180
++ + S + + P V N + +
Sbjct: 92 NTVEYQKNIDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRN 151
Query: 181 YNHWESLGNPG-----WGAAEALYYFKKSEDNRNQYLA--------ETPYHNSGGYLTVQ 227
+ G W A F + + + Y + Y
Sbjct: 152 LSGQAVTRVVGGMSTAWTC--ATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTG 209
Query: 228 EAPWHTPLAEAFVRGGEELGYENRDINGEYQTGFMVAQGTVRNGARCSTSKAFLQPVKTR 287
+ + V Y+ + ++Q + A S++
Sbjct: 210 TDQFKESIRHNLVLNKLTEEYKGQ---RDFQQIPLAATRRSPTFVEWSSANTVFDLQNRP 266
Query: 288 P------NLHISLHSHVTKVLIDPKNRMAIGVEFV--KNHQRHVIRARKEVILSGGAVNS 339
++ +V+ + N + + R I+A +L+ GAV++
Sbjct: 267 NTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV-YVLTAGAVHN 325
Query: 340 PQILMLSGIGPKDHLTDMGIKTIQDLKVGYNLQDHVGLGGFTFLINQPISLVQ-DRLESV 398
Q+L+ SG G + +G + + + T + + I V+ D
Sbjct: 326 TQLLVNSGFGQLGRPNPANPPELLPS-LGSYITEQSLVFCQTVMSTELIDSVKSDMTIRG 384
Query: 399 QSVLNYAMMGNGPLTVMGGDRLESVQSVLNYAMMGNGPLTVMGGVEGLAFVNTKYASDGG 458
+ P + V N+ M + + V T +
Sbjct: 385 TPGELTYSVTYTPGASTNKHPDWWNEKVKNHMMQHQEDPLPIPFEDPEPQVTTLFQPSHP 444
Query: 459 NQIR-KAHGLREDFYDEVYGPINNKDVWSAIPMLLRPRSRGRIKLRSRNPLDYPRIQPEY 517
+ + D + ++ + + + P+ ++
Sbjct: 445 WHTQIHRDAFSYGAVQQSIDSRLIVDWRFFGRTEPKEENKLWFSDKITDAYNMPQPTFDF 504
Query: 518 -FSDHHDMLTLIEGVKIILELSKTRSFRQYESRFHNIPFPNCTHIPMYTDAYYECMIRHY 576
F + + + +S S + H+
Sbjct: 505 RFPAGRTSKEAEDMMTDMCVMSAKIGGFLPGSLPQFMEPGLVLHL--------------- 549
Query: 577 SVTIYHPVGTCKMGP-ETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIG 635
GT +MG E + V+ RV G NL + +PT N + +
Sbjct: 550 -------GGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLA 602
Query: 636 EKGSDMIKQDWRK 648
K + IKQ++
Sbjct: 603 IKSCEYIKQNFTP 615
Score = 81.8 bits (201), Expect = 8e-16
Identities = 46/298 (15%), Positives = 84/298 (28%), Gaps = 21/298 (7%)
Query: 692 PDVPLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEES--PLSDIPCTYP 749
PD + M +YD V+VG G G AR L +KV + + G +S +
Sbjct: 36 PDKKVPGMDIKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTV 94
Query: 750 ALQTSPLDWQYKTEPNDRAC---LGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDA 806
Q + + + + + + P V N + R+
Sbjct: 95 EYQKNIDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSG 154
Query: 807 WEAA---GNEGWSYRDTLPYFIKSESVNISSLVDSPYHGTQGPLSVEEF-RYYSPVTEAF 862
G ++ P F + + + D+ + + Y+ T+ F
Sbjct: 155 QAVTRVVGGMSTAWTCATPRFDREQRPLLVKD-DADADDAEWDRLYTKAESYFQTGTDQF 213
Query: 863 VESA-GELGYEVGD--INGERQTGFTR--AHGTLKNGLRCSTAKAYL----RPIIARPNL 913
ES L G+R A + S+A RP P
Sbjct: 214 KESIRHNLVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEE 273
Query: 914 HVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYL 971
+L + + +L+AGA+ + Q+ +
Sbjct: 274 RFNLFPAVACERVVRNALNS-EIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLV 330
Score = 68.3 bits (166), Expect = 1e-11
Identities = 30/180 (16%), Positives = 53/180 (29%), Gaps = 25/180 (13%)
Query: 1020 YAGVFEPILYRDSITLAPL---LLRPRSRGRIKLRTADPLDHPMIRPNYLYDEKDLKTLV 1076
Y V + I R + + ++ + D + P ++ +
Sbjct: 456 YGAVQQSIDSRLIVDWRFFGRTEPKEENKLWFSDKITDAYNMPQPTFDFRFPAGRTSKEA 515
Query: 1077 EGAKIGYAITRTKAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCK 1136
E + K L PG + H GT +
Sbjct: 516 EDMMTDMCVMSAKIGGFLPGSLPQFMEPG---------------------LVLHLGGTHR 554
Query: 1137 MGPDSDPG-AVVDPRLRVRGVAGLRVIDASIMPTIVSGNTNAPTIMIAEKACDLIKEDWG 1195
MG D V+ RV G L + +PT N + +A K+C+ IK+++
Sbjct: 555 MGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFT 614
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 144 bits (363), Expect = 3e-36
Identities = 83/527 (15%), Positives = 159/527 (30%), Gaps = 74/527 (14%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE-------------------ESPLS 742
+V+G G GAV A RL++ ++E G S
Sbjct: 11 RVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWL 69
Query: 743 DIPCTYPALQTSPLDWQYKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRR 802
P + +G+ +GG S++N + V R
Sbjct: 70 ADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRN 129
Query: 803 DYDAWEAAGNEGWSYRDTLPYFIKSESV-NISSLVDSPYHGTQGPLSVEEFRYY---SPV 858
++ S YF ++ + ++++ + + T+ R S
Sbjct: 130 YFEEI---LPSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWYKFARTGRKTAQRSGF 186
Query: 859 TEAFVESAGELGYEVGDINGERQTGFTRAHGTL-KNGLRCSTAKAYLRPIIARPNLHVSL 917
T AFV + + Y + G+ N + S K YL A L ++
Sbjct: 187 TTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITT 246
Query: 918 HSHAYRVHFEPGPDGQMRATGVVV-KKGRKDPVLVRARREVILSAGAIGSPQVYLIPNEH 976
+ P T + ++G V V +AG++G+ ++ L+ +
Sbjct: 247 LHRVTK--VAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKL-LVSMKA 303
Query: 977 THYQVDLTD--GPEW---PDIQLFFASAADNDDGGL--------FNKRNNGLKDDYYAGV 1023
+ +L+ G W +I + A+ + G + + +
Sbjct: 304 QGHLPNLSSQVGEGWGNNGNIMVGRANHMWDATGSKQATIPTMGIDNWADPTAPIFAEIA 363
Query: 1024 FEPILYRDSITLAPLLLRPRSRGRIKLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKIGY 1083
P ++L + + R R + + + + +
Sbjct: 364 PLPAGLETYVSLYLAITKNPERARFQFNSG----TGKVDLTWAQSQNQ-----------K 408
Query: 1084 AITRTKAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTCKMGPDSDP 1143
I K + G + T L Y++ +T YHP+G +
Sbjct: 409 GIDMAKKVFD-----KINQKEGTIYRTDLFGVYYKTWGDDFT---YHPLGGVLLN----- 455
Query: 1144 GAVVDPRLRVRGVAGLRVIDASIMPTIVSGNTNAPTIMIAEKACDLI 1190
D R+ GL V+D S++P V N +AE+ D I
Sbjct: 456 -KATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKI 501
Score = 100 bits (249), Expect = 7e-22
Identities = 47/306 (15%), Positives = 91/306 (29%), Gaps = 51/306 (16%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDISDVP---------------- 122
+V+G+G GAV A RL++ ++E G
Sbjct: 11 RVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWL 69
Query: 123 ---VLAAYLQLSGLDWSYKTEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNRN 179
G + + + + +G+ VGG S++N + V RN
Sbjct: 70 ADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRN 129
Query: 180 DYNHWESLGNPGWGAAEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPLAEAF 239
+ L + Y+ + A T + E+ A
Sbjct: 130 YFEEI--LPSVDSNEMYNKYFPR----------ANTGLGVNNIDQAWFESTEWYKFARTG 177
Query: 240 VRGGEELGYENRDINGEYQTGFMVAQGTVR--------------NGARCSTSKAFLQPVK 285
+ + G+ + Y +M + + N + S K +L
Sbjct: 178 RKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAA 237
Query: 286 TRPNLHISLHSHVTKVLIDPKNRMAIGVEFV----KNHQRHVIRARKEVILSGGAVNSPQ 341
L I+ VTKV + ++ +E + V+ A V + G+V + +
Sbjct: 238 ATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTAD-RVFFAAGSVGTSK 296
Query: 342 ILMLSG 347
+L+
Sbjct: 297 LLVSMK 302
Score = 60.2 bits (145), Expect = 3e-09
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 579 TIYHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPVIMIGEKG 638
YHP+G + D R+ L V+D S++P V N + + E+
Sbjct: 444 FTYHPLGGVLLN------KATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERN 497
Query: 639 SDMI 642
D I
Sbjct: 498 MDKI 501
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.5 bits (159), Expect = 1e-10
Identities = 64/399 (16%), Positives = 107/399 (26%), Gaps = 144/399 (36%)
Query: 30 AETIPS---LAASAVSNVAWFAPLLAATVAFFQYGV----KDSAPESMNKAEPLYPEYDF 82
P L + +S PL+ Y V P +
Sbjct: 222 PSNTPDKDYLLSIPIS-----CPLIGVI-QLAHYVVTAKLLGFTPGELRS---------- 265
Query: 83 IVVGA--GSAGAVVANRLSEIENWKILLLEAGGDETDISDVPVLAAYLQLSGLDW----S 136
+ GA S G V A + + + ++ L +
Sbjct: 266 YLKGATGHSQGLVTA-----------VAIAETDSWESFFV----SVRKAITVLFFIGVRC 310
Query: 137 YKTEPSSTSCLAM-----EHNRCNWPRGKVVGGSSVLNYMLYVRG-----------NRND 180
Y+ P+++ ++ E+N G S ML + N
Sbjct: 311 YEAYPNTSLPPSILEDSLENNE---------GVPS---PMLSISNLTQEQVQDYVNKTNS 358
Query: 181 Y----NHWE-SLGNPGW------GAAEALYYFK------KSEDNRNQYLAETPYHN---- 219
+ E SL N G G ++LY K+ +Q + P+
Sbjct: 359 HLPAGKQVEISLVN-GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ--SRIPFSERKLK 415
Query: 220 -SGGYLTVQEAPWHTP-LAEAFVRGGEELGYENRDINGE------YQTGFMVAQGT---- 267
S +L V +P+H+ L A ++L N N + Y T G+
Sbjct: 416 FSNRFLPV-ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT----FDGSDLRV 470
Query: 268 -----VRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLI-DPKNRMAIGVEFVKNHQR 321
C PV + T +L P +GV +N
Sbjct: 471 LSGSISERIVDCIIRL----PV----KWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Query: 322 HVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIK 360
+R ++ G ++ P D D G K
Sbjct: 523 TGVR-----VIVAGTLDI---------NPDD---DYGFK 544
Score = 59.3 bits (143), Expect = 9e-09
Identities = 120/753 (15%), Positives = 209/753 (27%), Gaps = 304/753 (40%)
Query: 467 LREDFYDEVYGPINN---KDVWSAIPMLLRPRSRGRIKLRSRNPLDY--PRIQPEYFSDH 521
L+E F + P D + L+ G+ L Y ++P
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELV-----GKF-------LGYVSSLVEPSKVGQF 80
Query: 522 HDMLTLIEGVKIILELSKTRSFRQYESRF------HNI--PFPNCTHIPMYTDAYYECMI 573
+L L ++E+ + H + + +I
Sbjct: 81 DQVLNLC--------------LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE---LI 123
Query: 574 RHY---SVTIYHPVGTCKMGPETDS---EAVVDPRLRVHGI--GNLRVIDASIMPTIVSG 625
++Y + P +++S AV + ++ I G G
Sbjct: 124 KNYITARIMAKRPFD-----KKSNSALFRAVGEGNAQLVAIFGGQ--------------G 164
Query: 626 NTNAPVIMIGEKGSDMIKQDWRKYIYSSFSTARIAMSYGPSIGFILLFRYMISQYRPDVE 685
NT+ ++ R +Y + Y +G L ++ E
Sbjct: 165 NTDDYF------------EELRD-LYQT---------YHVLVGD--LIKFSA-------E 193
Query: 686 DLEHLIPDVP-LEEMYPE-YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESP--- 740
L LI E+++ + + + W LE +P
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNIL-------------------EW----LE-NPSNTPDKD 229
Query: 741 -LSDIPCTYPA---LQTSPLDWQYKTEPNDRAC--LGLN-GRRSNWPRGKVIGGSSVLNA 793
L IP + P +Q + Y LG G ++ +G ++ A
Sbjct: 230 YLLSIPISCPLIGVIQLA----HYVV-----TAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 794 MLYVRGNRRDYDAWEAAGNE-----------GWSYRDTLPYFIKSESVNISSLVDSPYHG 842
+ D+WE+ G + P + S+ S L DS +
Sbjct: 281 VAIAET-----DSWESFFVSVRKAITVLFFIGVRCYEAYP----NTSLPPSILEDSLENN 331
Query: 843 TQGP---LSVEEFRYYSPVTEAFVESAGELGYEVGDINGERQTGFTRAHGTLKNGLRCST 899
P LS+ S +T+ V+ V N G + +L NG
Sbjct: 332 EGVPSPMLSI------SNLTQEQVQDY------VNKTNSHLPAG-KQVEISLVNG----- 373
Query: 900 AKAYLRPIIARP--NLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRKDPVLVRARREV 957
AK +++ P +L+ L+ + G D Q R RK R
Sbjct: 374 AKNL---VVSGPPQSLY-GLNLTLRKAKAPSGLD-QSRIPF----SERKLKFSNR----- 419
Query: 958 ILSAGAIGSPQVYLIPNEHTHYQVDLTDGPEWPDIQLFFASAADNDDGGLFNKRNNGLKD 1017
L + SP + H+H L A+D +
Sbjct: 420 FL---PVASP--F-----HSHL---LVP-------------ASD------------LINK 441
Query: 1018 DYYAGVFEPILYRDSITLAPLLLRPRSRGRIKLRTADPLDHPMIRPNYLYDEKDLKTLVE 1077
D L +++++ ++ I P+ +D DL+ L
Sbjct: 442 D---------LVKNNVSFNAKDIQ------I------PVYDT-------FDGSDLRVLSG 473
Query: 1078 --GAKIGYAITRTKAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQVRHYTMTIYHPVGTC 1135
+I I R PV WE + T H +
Sbjct: 474 SISERIVDCIIR-------LPV------------------KWE-TTTQFKAT--HIL--- 502
Query: 1136 KMGPDSDPG-AVVDPRLRVRGVAGLRVIDASIM 1167
GP G V+ R + G G+RVI A +
Sbjct: 503 DFGPGGASGLGVLTHRNK-DG-TGVRVIVAGTL 533
Score = 58.5 bits (141), Expect = 2e-08
Identities = 112/694 (16%), Positives = 182/694 (26%), Gaps = 265/694 (38%)
Query: 35 SLAAS-AVSNVAWF----------APLLAATVAFFQYGVKDSAPESMNKAEPLYPEY-DF 82
SL V ++F L T F D P + AE L ++ +
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA----DDEPTT--PAE-LVGKFLGY 67
Query: 83 I--VVGAGSAGA---VVANRLSEIENWKILL----------LEAGGDETDISDVPVLAAY 127
+ +V G V+ L+E EN L L D T + ++ Y
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFEN-CYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 128 LQLSGLDWSYKTEPSSTSCLAMEHNRCNWPRGKVV---GGSSVLNYMLYVRGNRNDYNHW 184
+ + + S S L ++V GG +GN +DY +
Sbjct: 127 ITARIMA-KRPFDKKSNSALFRAVGE---GNAQLVAIFGG----------QGNTDDY--F 170
Query: 185 ESLGNPGWGAAEALYYFKKSEDNRNQYLAETPYHNSGGYLTVQEAPWHTPLAEAFVRGG- 243
E L R+ Y +T YH L ++
Sbjct: 171 EEL--------------------RDLY--QT-YH---------------VLVGDLIKFSA 192
Query: 244 ---EELGYENRDINGEYQTGFMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTK 300
EL D + G + +L+ P+ L ++
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNI--------------LEWLENPSNTPDKDYLLSIPISC 238
Query: 301 VLIDPKNRMAIGV-------EFVKNHQRHVIRARKEVILSGGAVNSPQILM---LSGIGP 350
LI GV K R L G +S ++ ++
Sbjct: 239 PLI--------GVIQLAHYVVTAKLLGFTPGELRS--YLKGATGHSQGLVTAVAIAETDS 288
Query: 351 KDHLTDMGIKTIQDL-KVGYNLQDHVGLGGFTFLINQPISLVQDRLESVQSVLNYAMMGN 409
+ K I L +G + P S+++D LE+ + V + M
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSL------PPSILEDSLENNEGVPSP--M-- 338
Query: 410 GPLTVMGGDRLESVQSVLNYAMMGNGPLTVMGGVEGLAFVNTKYASDGGNQIRKAHGLRE 469
L++ + E VQ +N N L VE ++ VN +
Sbjct: 339 --LSISNLTQ-EQVQDYVNKT---NSHLPAGKQVE-ISLVNG----------------AK 375
Query: 470 DFYDEVYGPINNKDVWSAIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIE 529
+ V GP P+S L N +
Sbjct: 376 NLV--VSGP---------------PQS-----LYGLN-------------------LTLR 394
Query: 530 GVKIILELSKTRS-FRQYESRFHN------IPFPNCTHIPMYTDAY---------YECMI 573
K L ++R F + + +F N PF H + A
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF----HSHLLVPASDLINKDLVKNNVSF 450
Query: 574 RHYS--VTIYHPVGTCKMGPETDSEAVVDPRLRVHGIGNLRVIDASIMPTIVSGNTNAPV 631
+ +Y D +LRV+ SI IV PV
Sbjct: 451 NAKDIQIPVYDT---------FDGS-------------DLRVLSGSISERIVDCIIRLPV 488
Query: 632 IMIGEKGSDMIKQDWRKYIYSSFSTARIAMSYGP 665
W ++ A + +GP
Sbjct: 489 -------------KWET---TTQFKATHILDFGP 506
Score = 56.6 bits (136), Expect = 6e-08
Identities = 108/670 (16%), Positives = 183/670 (27%), Gaps = 253/670 (37%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKIL---LLEAGGDETDISDVPVLAAYLQLSGLDW 135
E+ +V +A +A++L E + KIL D+ + ++ +L
Sbjct: 17 EHVLLV---PTASFFIASQLQE-QFNKILPEPTEGFAADDEPTTPAELVGKFLGYV---- 68
Query: 136 SYKTEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYML------YVRGN------------ 177
S EPS VLN L Y+ GN
Sbjct: 69 SSLVEPSKVGQF-----------------DQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 178 ------------RNDYNHWESLGNPGWGAAE-ALYYFKKSED-------------NRNQY 211
+N P + AL F+ + N + Y
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL--FRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 212 LAETPYHNSGGYLTVQEAPWHT--PLAEAFVRGG----EELGYENRDINGEYQTGFMVAQ 265
E L ++ + T L ++ EL D + G +
Sbjct: 170 FEE---------L--RDL-YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-- 215
Query: 266 GTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNRMAIGV-------EFVKN 318
+L+ P+ L ++ L IGV K
Sbjct: 216 ------------LEWLENPSNTPDKDYLLSIPISCPL--------IGVIQLAHYVVTAKL 255
Query: 319 HQRHVIRARKEVILSGGAVNSPQILM---LSGIGPKDHLTDMGIKTIQDL-KVGYNLQDH 374
R L G +S ++ ++ + K I L +G +
Sbjct: 256 LGFTPGELRS--YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 375 VGLGGFTFLINQPISLVQDRLESVQSVLNYAMMGNGPLTVMGGDRLESVQSVLN------ 428
P S+++D LE+ + V + M L++ + E VQ +N
Sbjct: 314 YPNTSL------PPSILEDSLENNEGVPSP-M-----LSISNLTQ-EQVQDYVNKTNSHL 360
Query: 429 ------YAMMGNGP--LTVMGGVEGLAFVNTKY----ASDGGNQIRKAHGLREDFYDEVY 476
+ NG L V G + L +N A G +Q R R+ + +
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 477 GPINNKDVWSAIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTLIEGVKIILE 536
P+ ++ P + S L+ +I +
Sbjct: 421 LPV------AS-P---------------------------FHSHL-----LVPASDLINK 441
Query: 537 -LSKTRSFRQYESRFHNIPFPNCT-HIPMY-----TDAYYECMIRHYSVTIYHPVGTCKM 589
L K +N+ F IP+Y +D +R S +I +
Sbjct: 442 DLVK-----------NNVSFNAKDIQIPVYDTFDGSD------LRVLSGSISERI--VDC 482
Query: 590 ---GP-----ETDSEA--VVD--PRLRVHGIGNL----------RVIDASIMPTIVSGNT 627
P T +A ++D P G+G L RVI A + N
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGP-GGASGLGVLTHRNKDGTGVRVIVAGTL----DINP 537
Query: 628 NAPVIMIGEK 637
+ G K
Sbjct: 538 DDDY---GFK 544
Score = 54.7 bits (131), Expect = 3e-07
Identities = 74/439 (16%), Positives = 111/439 (25%), Gaps = 195/439 (44%)
Query: 842 GTQGPLS--VEEFR--Y--YSPVTEAFVESAGELGYEVGDINGERQTGFTRAHG-TLKNG 894
G QG EE R Y Y + ++ + E E+ + + FT G +
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT--QGLNILEW 218
Query: 895 LRCSTAK---AYLR------PIIARPNLHVSLHSHAYRV-----HFEPGPDGQMR----- 935
L + YL P+I + + L +H Y V F P G++R
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIG---V-IQL-AH-YVVTAKLLGFTP---GELRSYLKG 269
Query: 936 ATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYLIPNEHTHYQVDLTDGPEWPDIQLF 995
ATG + +++A AI W
Sbjct: 270 ATGHS---------------QGLVTAVAIAE-------------------TDSWES---- 291
Query: 996 FASAADNDDGGLFNKRNNGLKDDYYAGV----------FEPILYRDSITL-----APLL- 1039
F + LF + GV P + DS+ +P+L
Sbjct: 292 FFVSVRKAITVLF-----------FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 1040 -------------------LRPRSRGRIKLRTADPLDH-----PMIRPNYLYDEKDLKTL 1075
L + I L + P P LY L
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA--KNLVVSGP---PQSLY---GLNLT 392
Query: 1076 VEGAKIGYAITRTKA----MK-----RFNPVLHNVTIPGCEHTTPLSDAY---------- 1116
+ AK + +++ K RF P V P H+ L A
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLP----VASP--FHSHLLVPASDLINKDLVKN 446
Query: 1117 -WECQVRHYTMTIYHPVGTCKMGPDSDPGAVVDPRLRVRGVAGLRVIDASIMPTIVSGNT 1175
+ + +Y G D LRV+ SI IV
Sbjct: 447 NVSFNAKDIQIPVYDTFD----GSD------------------LRVLSGSISERIVD--- 481
Query: 1176 NAPTIMIAEKACDLIKEDW 1194
I W
Sbjct: 482 -----CIIRLPV-----KW 490
Score = 36.2 bits (83), Expect = 0.084
Identities = 47/253 (18%), Positives = 78/253 (30%), Gaps = 65/253 (25%)
Query: 243 GEELGYENRDINGEYQTGFMVAQGTVRNGARCSTSKAF----LQPVKTRPNLHISLHSHV 298
G +L Y+ AQ V N A + L V P ++++H
Sbjct: 1632 GMDL-YKT----------SKAAQ-DVWNRADNHFKDTYGFSILDIVINNPV-NLTIHFGG 1678
Query: 299 TKVLIDPKNRMAIGVEFVKNHQRHVIRARKEV-------ILSG--GAVNSPQI----LML 345
K +N A+ E + + + + KE+ G +++ Q L L
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1738
Query: 346 SGIGPKDHLTDMGIKTIQDLKVGYNLQDH-VG----L----GGFTFLINQPISLVQDRLE 396
+ L G+ G H +G L + + +V R
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAG-----HSLGEYAALASLADVMSI--ESLVEVVFYRGM 1791
Query: 397 SVQSVL--------NYAMMGNGPLTVMGGDRLESVQSVLNYAMMGNGPLTVMGGVEGLAF 448
++Q + NY M+ P V E++Q V+ G L VE
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL-----VE---I 1843
Query: 449 VNTKYASDGGNQI 461
VN Y + Q
Sbjct: 1844 VN--YNVENQ-QY 1853
Score = 30.8 bits (69), Expect = 3.7
Identities = 31/181 (17%), Positives = 51/181 (28%), Gaps = 69/181 (38%)
Query: 582 HPVGTCKMGPE--TDSEAV------VDPRLR-VHGIGNLRVIDASIMPTIVSGNTNAPVI 632
G MG + S+A D + +G SI+ IV N I
Sbjct: 1627 QEQG---MGMDLYKTSKAAQDVWNRADNHFKDTYGF--------SIL-DIVINNPVNLTI 1674
Query: 633 MIGEKGSDMIKQDWRKYIYSSFSTARIAM--------SYGPSIGF--------------- 669
G + I++++ I+ + ++ + S F
Sbjct: 1675 HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 670 -ILLFRYMISQYRPDVEDLEH--LIPDVPLEEMYPEYDFVVVGG---G--SAGAVVARRL 721
+ L EDL+ LIP G G +A A +A +
Sbjct: 1735 ALTLMEKAA------FEDLKSKGLIPAD-----------ATFAGHSLGEYAALASLADVM 1777
Query: 722 S 722
S
Sbjct: 1778 S 1778
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 3e-08
Identities = 110/712 (15%), Positives = 197/712 (27%), Gaps = 245/712 (34%)
Query: 245 ELGYENRDINGEYQTGFMVAQGTVRNGARCSTSKAFLQPVKTRPNLHISLHSHVTKVLID 304
E Y+ +DI ++ F V N C + + + ++K ID
Sbjct: 13 EHQYQYKDILSVFEDAF------VDN-FDCKDVQDMPKSI-------------LSKEEID 52
Query: 305 PKNRMAIGVEFVKNHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQD 364
H+I ++ V L L L + +Q
Sbjct: 53 -----------------HIIMSKDAVS---------GTLRLFWT-----LLSKQEEMVQK 81
Query: 365 LKVGYNLQDHVGLGGFTFLI-------NQPISLVQDRLESVQSVLNYAMMGNG-----PL 412
V L+ + + FL+ QP S++ + L N
Sbjct: 82 F-VEEVLRIN-----YKFLMSPIKTEQRQP-SMMTRMYIEQRDRLY-----NDNQVFAKY 129
Query: 413 TVMGGDRLESVQSVLNYAMMGNGPLTV--MGGVEG---LAFVNTKYASDGGNQIRKAHGL 467
V ++ L + + + + G G +A + ++ +
Sbjct: 130 NVSRLQPYLKLRQAL-LELRPAKNVLIDGVLGS-GKTWVA-----------LDVCLSYKV 176
Query: 468 REDFYDEVYGPINNKDVWSAIPMLLRPRSRGRIKLRSRNPLDYPRIQPEYFSDHHDMLTL 527
+ +++ W + L+ + L L +I P + S +
Sbjct: 177 QCKMDFKIF--------W----LNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNI 223
Query: 528 IEGVKIILELSKTRSFRQYESRFHNIPFPNCTHI------PMYTDAY-YECMI----RHY 576
K+ + + R +S+ P+ NC + +A+ C I R
Sbjct: 224 ----KLRIHSIQAELRRLLKSK----PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 577 SVT-------IYHPVGTCKMGPETDSEA------VVDPRLRVHGIGNLRVIDASIMPTIV 623
VT H T E +D +L + P +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-----CRPQDLPREVLTTNPRRL 330
Query: 624 SGNTNAPVIMIGEKGSDMIK--QDWRKYIYSSFSTARIAMSY---GPSIGFILLFR--Y- 675
S +I E D + +W+ +T I S P+ +R +
Sbjct: 331 S--------IIAESIRDGLATWDNWKHVNCDKLTTI-IESSLNVLEPA-----EYRKMFD 376
Query: 676 MISQYRPDVEDLEHLIPDVPLE----EMYPEYDFVVVGGGSAGAVVARRLSEQKNWK--- 728
+S + P IP + L ++ VVV + L E K K
Sbjct: 377 RLSVFPPSA-----HIPTILLSLIWFDVIKSDVMVVVNK-----LHKYSLVE-KQPKEST 425
Query: 729 ------VLLLEAGGEESP-----LSD---IPCTYP--ALQTSPLDWQY----------KT 762
L L+ E + D IP T+ L LD QY
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD-QYFYSHIGHHLKNI 484
Query: 763 EPNDRACLG----LNGRRSNWPRGKVI-------GGSSVLNAML-------YVRGNRRDY 804
E +R L L+ R + K+ S+LN + Y+ N Y
Sbjct: 485 EHPERMTLFRMVFLDFR---FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 805 DAWEAAGNEGWSYRDTLPYFIKSESVNISSLVDSPYHG-TQGPLSVEEFRYY 855
+ + + F+ N L+ S Y + L E+ +
Sbjct: 542 ER----------LVNAILDFLPKIEEN---LICSKYTDLLRIALMAEDEAIF 580
Score = 52.2 bits (124), Expect = 1e-06
Identities = 61/377 (16%), Positives = 111/377 (29%), Gaps = 97/377 (25%)
Query: 803 DYDAWEAAGNEGWSYRDTLPYFIKS--ESVNISSLVDSPYHGTQGPLSVEEF-------- 852
D++ G + Y+D L F + ++ + + D P + LS EE
Sbjct: 8 DFET----GEHQYQYKDILSVFEDAFVDNFDCKDVQDMP----KSILSKEEIDHIIMSKD 59
Query: 853 -------------RYYSPVTEAFVESAGELGYE--VGDINGE-RQ-TGFTRAHGTLKNGL 895
+ + FVE + Y+ + I E RQ + TR + ++ L
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 896 RCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGP----DGQMRATG--VVVKKG-RKDP 948
+ + + + ++R ++ L + P DG + +G V
Sbjct: 120 -YNDNQVFAKYNVSRLQPYLKLRQALLEL--RPAKNVLIDG-VLGSGKTWVALDVCLSYK 175
Query: 949 VLVRARREVI-LSAGAIGSPQVYLIPNEHTHYQVD--LTDGPEWPD-IQLFFASAADNDD 1004
V + ++ L+ SP+ L + YQ+D T + I+L S
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 1005 GGLFNKRNNGLKDDYYAGVFEPILYRDSITLAPLLLRPRSRGRIKLRTADPLDHPMIRPN 1064
L +K Y + LL+ L +
Sbjct: 236 RLLKSKP-----------------YENC-----LLV---------------LLN------ 252
Query: 1065 YLYDEKDLKTLVEGAKIGYAITRTKAMKRFNPVLHNVTIPGCEHTTPLSDAYWECQVRHY 1124
+ + K KI TR K + F I H+ L+ + + Y
Sbjct: 253 -VQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 1125 TMTIYH--PVGTCKMGP 1139
P P
Sbjct: 311 LDCRPQDLPREVLTTNP 327
Score = 45.6 bits (107), Expect = 1e-04
Identities = 51/408 (12%), Positives = 110/408 (26%), Gaps = 133/408 (32%)
Query: 9 AVKLGCWGPKKGATGRQMSGVAETIPSLAASAVSNVAWFAPL-LAATVAFF-QY-GVKDS 65
A L C K T R V + + + + +S L + +Y +
Sbjct: 261 AFNLSC---KILLTTRF-KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 66 A-PESMNKAEPLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDIS----- 119
P + P + + + L+ +NWK + + + S
Sbjct: 317 DLPREVLTTNPR-------RLS--IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 120 ----------------DVPVLAAYLQLSGLDWSYKTEPSSTSCLAMEHNRC----NWPRG 159
+ L L + W + + H
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSL--I-WFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 160 KVVGGSSVLN-YMLYVRGNRND----------YN-----HWESLGNPGWGAAEALYYFKK 203
+ S+ + Y+ N+ YN + L P Y++
Sbjct: 425 TI----SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ----YFY-- 474
Query: 204 SEDNRNQYLAETPYHNSGGYLTVQEAPWHTPLAEAFVRGGEELGYENRDINGEYQT-GFM 262
++ +H L E H F R + + F+
Sbjct: 475 ------SHIG---HH-----LKNIE---HPERMTLF-----------RMV---FLDFRFL 503
Query: 263 VAQGTVRN-----GARCSTSKAFLQPVKTRPNLHISLHSHVTKVLIDPKNRMAIG--VEF 315
+ +R+ A S Q +P +I + DPK + ++F
Sbjct: 504 --EQKIRHDSTAWNASGSILNTLQQLKFYKP--YICDN--------DPKYERLVNAILDF 551
Query: 316 VKNHQRHVIRARKEVILSGGAVNSPQILMLSGIGPKDHLTDMGIKTIQ 363
+ + ++I ++ +L +I +++ + + + K +Q
Sbjct: 552 LPKIEENLICSKYTDLL--------RIALMA---EDEAIFEEAHKQVQ 588
Score = 41.8 bits (97), Expect = 0.002
Identities = 80/499 (16%), Positives = 152/499 (30%), Gaps = 152/499 (30%)
Query: 640 DMIKQDWRKYIYSSFSTARIAMSYGPSIGFILLFRYMISQYRPDVEDLEHLIP-DVP--- 695
++++ ++ K++ S T + PS ++ R I Q D + +V
Sbjct: 85 EVLRINY-KFLMSPIKTEQR----QPS----MMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 696 --------LEEMYPEYDFVVVGGGSAG-----AVVAR--RLSEQKNWKVLLLEAGGEESP 740
L E+ P + ++ G +G V ++ + ++K+ L SP
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 741 LSDIPCTYPALQTSPLDWQYKTEPNDRACLGLNGR-RSNWPRGKVIGGSSVLNAMLYVRG 799
+ + LQ L +Q R+ N + R + + + L +L +
Sbjct: 196 ETVL----EMLQK--LLYQIDPNWTSRSDHSSNIKLRIHSIQAE-------LRRLLKSKP 242
Query: 800 NRRDY----DAWEAAGNEGWSYRD----TLPYFIKSESVNISSLVDSPYHGTQGPLSVEE 851
+ A + W+ + L + + ++ + + T +S++
Sbjct: 243 YENCLLVLLNVQNA---KAWNAFNLSCKIL---LTTRFKQVTDFLSA---ATTTHISLDH 293
Query: 852 FRYYSPVTEAFVES--AGELGYEVGDINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIA 909
+T V+S L D+ E T N R S +R +A
Sbjct: 294 HS--MTLTPDEVKSLLLKYLDCRPQDLPREVLTT---------NPRRLSIIAESIRDGLA 342
Query: 910 RPN--LHV--------------SLHSHAYRVHFE-----------PGP-------DGQMR 935
+ HV L YR F+ P D
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 936 ATGVVVKKGRKDPVLVRARREVILSAGAIGSPQVYL-----IPNE---H----THYQV-- 981
VVV K K ++ + +E I P +YL + NE H HY +
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKE-----STISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 982 --DLTD-GPEWPDIQLFF------ASAADNDD-GGLFNK------------RNNGLKDDY 1019
D D P + D Q F+ ++ + LF R++ +
Sbjct: 458 TFDSDDLIPPYLD-QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 1020 YAGVFEPIL----YRDSIT 1034
+ + Y+ I
Sbjct: 517 SGSILNTLQQLKFYKPYIC 535
Score = 29.4 bits (65), Expect = 9.6
Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 31/94 (32%)
Query: 1241 RSRDRQADTES-ETQPNKV---PKALSKLFAKRLPEQKTPKKGLE--------------G 1282
R T Q +++ + +K RL ++ L G
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 1283 TTK----------YKLSDMFRKKLYW---GKSHE 1303
+ K YK+ K++W +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 52.1 bits (124), Expect = 8e-07
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 696 LEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLE 733
++ M +D VVG G G +A R++ Q + +VL+LE
Sbjct: 1 MQPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLE 38
Score = 46.3 bits (109), Expect = 4e-05
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLE 110
+D VVG+G G +A R++ + ++L+LE
Sbjct: 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLE 38
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 47.8 bits (113), Expect = 2e-05
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 692 PDVPLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
++ +D+++VG G AG+V+A RL+ +VL+++
Sbjct: 19 NTTNEQQESKGFDYLIVGAGFAGSVLAERLAS-SGQRVLIVDR 60
Score = 44.0 bits (103), Expect = 2e-04
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 65 SAPESMNKAEPLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEA 111
+ + + +D+++VGAG AG+V+A RL+ ++L+++
Sbjct: 15 TEQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLAS-SGQRVLIVDR 60
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 47.1 bits (112), Expect = 3e-05
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 16/119 (13%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESPLSDIPC----TYPALQTSPLD 757
+YD +++GGG AG+ A +LS ++ K+LL+++ D PC + +
Sbjct: 6 KYDVLIIGGGFAGSSAAYQLS-RRGLKILLVDSKPWNRI-GDKPCGDAVSKAHFDKLGMP 63
Query: 758 WQYKTEPNDRACLGLNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAW--EAAGNEG 814
+ E ++ +NG + P + + + L N Y+ + A + G
Sbjct: 64 YPKGEELENK----INGIKLYSPDMQTVWTVNGEGFEL----NAPLYNQRVLKEAQDRG 114
Score = 37.9 bits (88), Expect = 0.022
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114
+YD +++G G AG+ A +LS KILL+++
Sbjct: 6 KYDVLIIGGGFAGSSAAYQLSR-RGLKILLVDSKPW 40
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 45.8 bits (109), Expect = 6e-05
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESPLSDIPC 746
YD +VVGGG G+ AR ++ K L++E E S + C
Sbjct: 4 TYDVLVVGGGPGGSTAARYAAK-YGLKTLMIEKRPE--IGSPVRC 45
Score = 39.2 bits (92), Expect = 0.008
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114
YD +VVG G G+ A ++ K L++E +
Sbjct: 4 TYDVLVVGGGPGGSTAARYAAK-YGLKTLMIEKRPE 38
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 45.1 bits (106), Expect = 7e-05
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 674 RYMISQYRPDVEDLEHLIPDVPLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLE 733
R M +Y D+ Y E D VVVG GSAG A +S+ N +V ++E
Sbjct: 24 REMTRRYMTDMIT-------------YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIE 70
Query: 734 AGGE 737
Sbjct: 71 QSVS 74
Score = 39.3 bits (91), Expect = 0.006
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 77 YPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112
Y E D +VVGAGSAG A +S+ N ++ ++E
Sbjct: 37 YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQS 72
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 45.4 bits (107), Expect = 8e-05
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
YD+++VG G GAV A L + N KVL++E
Sbjct: 2 YDYIIVGSGLFGAVCANELKK-LNKKVLVIEK 32
Score = 42.7 bits (100), Expect = 6e-04
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEA 111
YD+I+VG+G GAV AN L + N K+L++E
Sbjct: 2 YDYIIVGSGLFGAVCANELKK-LNKKVLVIEK 32
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 45.4 bits (107), Expect = 1e-04
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
++VG G +GAV+ R+L+E K +V +++
Sbjct: 3 SKKILIVGAGFSGAVIGRQLAE-KGHQVHIIDQ 34
Score = 42.4 bits (99), Expect = 8e-04
Identities = 9/33 (27%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEA 111
++VGAG +GAV+ +L+E + ++ +++
Sbjct: 3 SKKILIVGAGFSGAVIGRQLAE-KGHQVHIIDQ 34
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 45.2 bits (107), Expect = 1e-04
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 689 HLIPDVPLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735
H VP P +D+VVVG G G A L VL+++AG
Sbjct: 10 HSSGLVPRGSHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG 56
Score = 37.8 bits (88), Expect = 0.023
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 67 PESMNKAEPLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112
+ P +D++VVGAG G A L +L+++AG
Sbjct: 11 SSGLVPRGSHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG 56
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 44.0 bits (103), Expect = 2e-04
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 14/65 (21%)
Query: 674 RYMISQYRPDVEDLEHLIPDVPLEEMYPEYDFVVVGGGSAGAVVARRLSEQK-NWKVLLL 732
R M +Y D++ + E D V+VG GS G A LS + + ++ ++
Sbjct: 64 RAMTRRYFADLDA-------------HAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIV 110
Query: 733 EAGGE 737
EAG
Sbjct: 111 EAGVA 115
Score = 36.7 bits (84), Expect = 0.048
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 77 YPEYDFIVVGAGSAGAVVANRLSEIE-NWKILLLEAG 112
+ E D ++VGAGS G A LS + + +I ++EAG
Sbjct: 77 HAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAG 113
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 44.1 bits (103), Expect = 3e-04
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
D +V+G G G A+RL++ +++++
Sbjct: 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDS 42
Score = 41.4 bits (96), Expect = 0.002
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEA 111
D +V+GAG G A RL++I+ +++++
Sbjct: 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDS 42
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 42.5 bits (101), Expect = 8e-04
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
M + D +V+G G G +AR L+ +VL+ EA
Sbjct: 1 MSTDIDCIVIGAGVVGLAIARALA-AGGHEVLVAEA 35
Score = 34.8 bits (81), Expect = 0.17
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114
+ D IV+GAG G +A L+ ++L+ EA
Sbjct: 3 TDIDCIVIGAGVVGLAIARALAA-GGHEVLVAEAAEG 38
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 42.2 bits (99), Expect = 9e-04
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA----GG 736
+ + ++G G AG L + +LE GG
Sbjct: 3 ISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG 44
Score = 34.1 bits (78), Expect = 0.27
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEA----GG 113
+ ++GAG AG L + +LE GG
Sbjct: 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG 44
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 42.1 bits (98), Expect = 0.001
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 14/63 (22%)
Query: 674 RYMISQYRPDVEDLEHLIPDVPLEEMYPEYDFVVVGGGSAGAVVARRLSEQK-NWKVLLL 732
R M S+Y D++ + D ++VG GS+G A +++ + + KV ++
Sbjct: 50 RAMTSRYFKDLDK-------------FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCII 96
Query: 733 EAG 735
E+
Sbjct: 97 ESS 99
Score = 38.6 bits (89), Expect = 0.010
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 77 YPEYDFIVVGAGSAGAVVANRLSEIE-NWKILLLEAG 112
+ D I+VGAGS+G A +++ + K+ ++E+
Sbjct: 63 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESS 99
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 41.6 bits (98), Expect = 0.001
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA----GG 736
+ D +VG G +G A L + V ++EA GG
Sbjct: 5 QRDVAIVGAGPSGLAAATALRKA-GLSVAVIEARDRVGG 42
Score = 36.6 bits (85), Expect = 0.046
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEA----GG 113
+ D +VGAG +G A L + + ++EA GG
Sbjct: 5 QRDVAIVGAGPSGLAAATALRK-AGLSVAVIEARDRVGG 42
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 41.3 bits (97), Expect = 0.002
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA----GG 736
YD +VVGGG +G AR L+ KVLLLE GG
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNA-GKKVLLLEGGERLGG 38
Score = 36.7 bits (85), Expect = 0.042
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEA----GG 113
YD IVVG G +G A L+ K+LLLE GG
Sbjct: 2 YDAIVVGGGFSGLKAARDLTN-AGKKVLLLEGGERLGG 38
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 41.2 bits (95), Expect = 0.002
Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 701 PEYDFVVVGGGSAGAVVARRLSE-QKNWKVLLLEAGGEESPLSDIPCTYPALQTS--PLD 757
+D VV+G G GA A L + +LL+E GG + P
Sbjct: 35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAG 94
Query: 758 WQYKTEPNDRACLGLNG 774
+ + E LG G
Sbjct: 95 QEAQAEWTREQLLGALG 111
Score = 39.7 bits (91), Expect = 0.006
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 78 PEYDFIVVGAGSAGAVVANRLSEIE-NWKILLLEAGGDETDISDVPVLAAYLQLSGLDWS 136
+D +V+GAG GA A L ++ +LL+E GG + + +
Sbjct: 35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAG 94
Query: 137 YKTEPSSTS 145
+ + T
Sbjct: 95 QEAQAEWTR 103
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 41.0 bits (97), Expect = 0.002
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 698 EMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735
M Y+ VV+GGG G+ +A L+ ++N L E+G
Sbjct: 13 AMKRHYEAVVIGGGIIGSAIAYYLA-KENKNTALFESG 49
Score = 34.9 bits (81), Expect = 0.16
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 67 PESMNKAEPLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112
M + + Y+ +V+G G G+ +A L++ EN L E+G
Sbjct: 5 HHHMARIRAMKRHYEAVVIGGGIIGSAIAYYLAK-ENKNTALFESG 49
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 41.1 bits (97), Expect = 0.002
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE 737
E D++V+G G AGA LS +V++LE +
Sbjct: 9 EADYLVIGAGIAGASTGYWLSAHG--RVVVLEREAQ 42
Score = 32.2 bits (74), Expect = 1.3
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114
E D++V+GAG AGA LS ++++LE
Sbjct: 9 EADYLVIGAGIAGASTGYWLSAHG--RVVVLEREAQ 42
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 40.6 bits (96), Expect = 0.004
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 697 EEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
M +D VV+G GS G + +V +++
Sbjct: 2 SHMSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV 39
Score = 32.2 bits (74), Expect = 1.3
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEA 111
+D +V+GAGS G + + ++ +++
Sbjct: 7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV 39
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 40.3 bits (94), Expect = 0.004
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735
+D +V+GGG G+ +A ++ + +VLLLE
Sbjct: 7 VFDLIVIGGGPGGSTLASFVA-MRGHRVLLLERE 39
Score = 35.7 bits (82), Expect = 0.12
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112
+D IV+G G G+ +A+ ++ ++LLLE
Sbjct: 7 VFDLIVIGGGPGGSTLASFVAM-RGHRVLLLERE 39
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 40.2 bits (94), Expect = 0.004
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
M + D VVVGGG +G A+ L + V++LEA
Sbjct: 1 MSNKCDVVVVGGGISGMAAAKLLHDS-GLNVVVLEA 35
Score = 36.0 bits (83), Expect = 0.080
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEA 111
+ D +VVG G +G A L + +++LEA
Sbjct: 4 KCDVVVVGGGISGMAAAKLLHD-SGLNVVVLEA 35
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 40.2 bits (94), Expect = 0.004
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 699 MYPE-YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735
M E D +V+G G AG V A ++ + +KV ++E
Sbjct: 1 MQREKVDVLVIGAGPAGTVAASLVN-KSGFKVKIVEKQ 37
Score = 35.5 bits (82), Expect = 0.13
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112
+ D +V+GAG AG V A+ +++ +K+ ++E
Sbjct: 5 KVDVLVIGAGPAGTVAASLVNK-SGFKVKIVEKQ 37
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 40.2 bits (95), Expect = 0.004
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736
M +D + +GGGS G VA + + +V L+E+
Sbjct: 1 MTQHFDLIAIGGGSGGLAVAEKAA-AFGKRVALIESKA 37
Score = 34.0 bits (79), Expect = 0.36
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113
+D I +G GS G VA + + ++ L+E+
Sbjct: 4 HFDLIAIGGGSGGLAVAEKAAAF-GKRVALIESKA 37
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 40.0 bits (93), Expect = 0.005
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 692 PDVPLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735
VP ++GGG AG+V L + V + E
Sbjct: 13 GLVPRGSHMTRSKVAIIGGGPAGSVAGLTLH-KLGHDVTIYERS 55
Score = 33.8 bits (77), Expect = 0.42
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112
++G G AG+V L + + + E
Sbjct: 23 RSKVAIIGGGPAGSVAGLTLHK-LGHDVTIYERS 55
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 39.7 bits (93), Expect = 0.005
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736
M YD VVVGGG G A +++ ++ +VL+LE
Sbjct: 1 MTESYDVVVVGGGPVGLATAWQVA-ERGHRVLVLERHT 37
Score = 34.0 bits (78), Expect = 0.34
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113
YD +VVG G G A +++E ++L+LE
Sbjct: 5 YDVVVVGGGPVGLATAWQVAE-RGHRVLVLERHT 37
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 39.6 bits (93), Expect = 0.005
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735
+YD +++G GS GA + VL+ +A
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATRAG-LNVLMTDAH 34
Score = 35.0 bits (81), Expect = 0.14
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112
+YD I++G+GS GA + +L+ +A
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATR-AGLNVLMTDAH 34
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 39.7 bits (92), Expect = 0.007
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 692 PDVPLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736
P ++ V+G G +G A +L V + EA G
Sbjct: 3 PSAGEDKHSSAKRVAVIGAGVSGLAAAYKLK-IHGLNVTVFEAEG 46
Score = 30.5 bits (68), Expect = 3.8
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113
V+GAG +G A +L + + EA G
Sbjct: 12 SAKRVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEG 46
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 39.5 bits (91), Expect = 0.007
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
V++G G G A RL+E L E
Sbjct: 10 PKIVIIGAGPTGLGAAVRLTELGYKNWHLYEC 41
Score = 35.2 bits (80), Expect = 0.13
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEA 111
+++GAG G A RL+E+ L E
Sbjct: 10 PKIVIIGAGPTGLGAAVRLTELGYKNWHLYEC 41
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 39.0 bits (92), Expect = 0.008
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736
M YD++ +GGGS G R + K L+EA
Sbjct: 1 MTKHYDYIAIGGGSGGIASINRAAMYGQ-KCALIEAKE 37
Score = 32.9 bits (76), Expect = 0.73
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113
YD+I +G GS G NR + K L+EA
Sbjct: 4 HYDYIAIGGGSGGIASINRAAMY-GQKCALIEAKE 37
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 39.1 bits (92), Expect = 0.010
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
YD VV+G GS G + +V +++
Sbjct: 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL 35
Score = 32.9 bits (76), Expect = 0.80
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEA 111
YD +V+GAGS G + + ++ +++
Sbjct: 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL 35
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 38.6 bits (91), Expect = 0.012
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736
+YD V+GGGS G R + KV + E
Sbjct: 5 DYDLFVIGGGSGGVRSGRLAA-ALGKKVAIAEEFR 38
Score = 33.2 bits (77), Expect = 0.61
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 7/35 (20%)
Query: 79 EYDFIVVGAGSAGAVVANRLSE-------IENWKI 106
+YD V+G GS G + E ++
Sbjct: 5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFRY 39
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 38.4 bits (90), Expect = 0.013
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE 737
+D +VVG GS G +L+ ++ K LL++A
Sbjct: 4 FDVIVVGAGSMGMAAGYQLA-KQGVKTLLVDAFDP 37
Score = 32.3 bits (74), Expect = 0.96
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113
+D IVVGAGS G +L++ + K LL++A
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFD 36
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 38.6 bits (89), Expect = 0.014
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA----GG 736
+ +++G G AG A L + L+LEA GG
Sbjct: 7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
Score = 36.3 bits (83), Expect = 0.062
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 70 MNKAEPLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEA----GG 113
MN P + I++GAG AG A+ L + L+LEA GG
Sbjct: 1 MNTVSP--AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 38.3 bits (90), Expect = 0.016
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 696 LEEMYP---EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736
+E M YD++V+GGGS G ARR + K LL+EA
Sbjct: 2 VEFMSTNTKHYDYLVIGGGSGGVASARRAA-SYGAKTLLVEAKA 44
Score = 34.4 bits (80), Expect = 0.27
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 79 EYDFIVVGAGSAGAVVANRLSE-------IENWKI 106
YD++V+G GS G A R + +E +
Sbjct: 11 HYDYLVIGGGSGGVASARRAASYGAKTLLVEAKAL 45
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 38.0 bits (89), Expect = 0.017
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 698 EMYPEYDFVVVGGGSAGAVVARRLSEQKNWK-VLLLEAG 735
E YD ++VGGG G A L++ V +LE G
Sbjct: 17 EPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55
Score = 32.2 bits (74), Expect = 1.2
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 67 PESMNKAEPLYPEYDFIVVGAGSAGAVVANRLSEIENWK-ILLLEAG 112
PE + YD I+VG G G A L++ + +LE G
Sbjct: 9 PEFLWANPEPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 38.2 bits (90), Expect = 0.019
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 695 PLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736
P YD++V+GGGS G ARR +E + ++E+
Sbjct: 13 PAAGAVASYDYLVIGGGSGGLASARRAAELGA-RAAVVESHK 53
Score = 33.6 bits (78), Expect = 0.44
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
Query: 79 EYDFIVVGAGSAGAVVANRLSE-------IENWKI 106
YD++V+G GS G A R +E +E+ K+
Sbjct: 20 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKL 54
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 37.9 bits (88), Expect = 0.020
Identities = 50/326 (15%), Positives = 83/326 (25%), Gaps = 79/326 (24%)
Query: 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESPLSDIPCTYPALQTSPLDW 758
+ ++VG G+ G A L+ + V +L+ +P
Sbjct: 3 VTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPY-------PVP------------- 42
Query: 759 QYKTEPNDRACLGLNGRRSNWPRGKVI----GGSSVLNAMLYVRGNRRDYDAWEAAGNEG 814
+ + KVI ++ + ++ W+
Sbjct: 43 --------------SAISAGNDVNKVISSGQYSNNKDEIEVNEILAEEAFNGWKND--PL 86
Query: 815 WS--YRDTLPYFIKSESVNISSLVDSPYHGTQGP----LSVEEFRYYSPVTEAFVESAGE 868
+ Y DT + L G E+FR +P + G
Sbjct: 87 FKPYYHDTGLLMSACSQEGLDRLGVRVRPGEDPNLVELTRPEQFRKLAPEGVLQGDFPGW 146
Query: 869 LGYEVGDINGERQTGFTRAHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEP 928
GY G+ A L A R + V + +
Sbjct: 147 KGYFA-----RSGAGWAHARNAL---------VAAAREAQR---MGVKFVTGTPQGRVVT 189
Query: 929 GPDGQMRATGVVVKKGRKDPVLVRARREVILSAGA----IGSPQVYLIPNEHTHYQVDLT 984
G V G+ RA R L AGA + L P T + L
Sbjct: 190 LIFENNDVKGAVTADGKI----WRAER-TFLCAGASAGQFLDFKNQLRPTAWTLVHIALK 244
Query: 985 DGP--EWPDIQLFFASAADNDDGGLF 1008
+ +I + F N + G F
Sbjct: 245 PEERALYKNIPVIF-----NIERGFF 265
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 37.9 bits (89), Expect = 0.023
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 692 PDVPLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736
P ++D V+G GS G AR +V + E
Sbjct: 16 TQGPGSMGSFDFDLFVIGSGSGGVRAARLAG-ALGKRVAIAEEYR 59
Score = 33.6 bits (78), Expect = 0.49
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 79 EYDFIVVGAGSAGAVVANRLSE-------IENWKI 106
++D V+G+GS G A E ++I
Sbjct: 26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEEYRI 60
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 37.9 bits (88), Expect = 0.024
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA----GG 736
+ VV+GGG AG A L + +KV +LEA GG
Sbjct: 10 GSHSVVVLGGGPAGLCSAFELQKA-GYKVTVLEARTRPGG 48
Score = 33.3 bits (76), Expect = 0.53
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 66 APESMNKAEPLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEA----GG 113
A + + K + + +V+G G AG A L + +K+ +LEA GG
Sbjct: 1 AGDLIGKVKG---SHSVVVLGGGPAGLCSAFELQK-AGYKVTVLEARTRPGG 48
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 37.9 bits (87), Expect = 0.027
Identities = 25/203 (12%), Positives = 51/203 (25%), Gaps = 18/203 (8%)
Query: 37 AASAVSNVAWFAPLLAATVAFF--QYGVKDSAPESMNKAEPLYPEYDFIVVGAGSAGAVV 94
+ +L V + ++G+ + K P I++G+G +G
Sbjct: 63 TLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAA 122
Query: 95 ANRLSEIENWKILLLEA----GGDETDISDVPVLAAYLQLSGLDWSYKTEPSSTSCLAME 150
A +L + LLEA GG ++ L G + + ++ +
Sbjct: 123 ARQLQS-FGMDVTLLEARDRVGG---RVATFRKGNYVADL-GAMVVTGLGGNPMAVVSKQ 177
Query: 151 HNRCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHWESLGNPGWGAAEALYYFKKSEDNRNQ 210
+ + G E + EA Y D
Sbjct: 178 V-------NMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVL 230
Query: 211 YLAETPYHNSGGYLTVQEAPWHT 233
+ + +
Sbjct: 231 NNKPVSLGQALEVVIQLQEKHVK 253
Score = 37.5 bits (86), Expect = 0.034
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 689 HLIPDVPLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
+ + +++G G +G AR+L V LLEA
Sbjct: 94 GIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEA 138
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 37.6 bits (87), Expect = 0.027
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 682 PDVEDLEHLIPDVPLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA----GG 736
D E+ + + L+ V+VG G AG A L+ +V +LEA GG
Sbjct: 14 NDYEEFLEIARN-GLKATSNPKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPGG 70
Score = 30.2 bits (68), Expect = 4.7
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 71 NKAEPLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEA----GG 113
N + ++VGAG AG A L+ ++ +LEA GG
Sbjct: 25 NGLKATSNPKHVVIVGAGMAGLSAAYVLAG-AGHQVTVLEASERPGG 70
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 37.6 bits (88), Expect = 0.027
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736
YD +V+GGGS G ARR + + N KV L+E
Sbjct: 3 YDLIVIGGGSGGMAAARRAA-RHNAKVALVEKSR 35
Score = 33.0 bits (76), Expect = 0.69
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 7/34 (20%)
Query: 80 YDFIVVGAGSAGAVVANRLSE-------IENWKI 106
YD IV+G GS G A R + +E ++
Sbjct: 3 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSRL 36
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 37.6 bits (87), Expect = 0.029
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA----GG 736
+VVG G +G A+RLSE +L+LEA GG
Sbjct: 5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG 42
Score = 31.4 bits (71), Expect = 2.1
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEA----GG 113
IVVGAG +G A RLSE +L+LEA GG
Sbjct: 5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG 42
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 37.3 bits (87), Expect = 0.037
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 697 EEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736
E EYD + +GGG+AG + L + L+++
Sbjct: 38 ENDPREYDAIFIGGGAAGRFGSAYLR-AMGGRQLIVDRWP 76
Score = 31.1 bits (71), Expect = 2.5
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 11/57 (19%)
Query: 64 DSAPESMNKAEPLYPEYDFIVVGAGSAGAVVANRLSE-------IENWKILLLEAGG 113
D N E EYD I +G G+AG + L ++ W L GG
Sbjct: 28 DGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL----GG 80
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 36.7 bits (86), Expect = 0.044
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735
M P V+G G A A + EQ +V L+E G
Sbjct: 1 MEPPVQVAVIGSGGAAMAAALKAVEQG-AQVTLIERG 36
Score = 29.8 bits (68), Expect = 7.3
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 78 PEYDFIVVGAGSAGAVVANRLSE 100
P V+G+G A A + E
Sbjct: 3 PPVQVAVIGSGGAAMAAALKAVE 25
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET:
TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 37.0 bits (84), Expect = 0.046
Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 8/119 (6%)
Query: 706 VVVGGGSAGAVVARRLSE--QKNWKVLLLEAGGEESPLSDIPCTYPALQTSPLDWQYKTE 763
V+VGGG+AG + A L V L+E+ G + T+ ++
Sbjct: 6 VIVGGGTAGWMTASYLKAAFDDRIDVTLVES-GNVRRIGVGEATFSTVRHFFDYLGLDER 64
Query: 764 PNDRACLG---LNGRRSNWPRGKVIGGSSVLNAMLYVRGNRRDYDAWEAAGNEGWSYRD 819
C G L R NW + L V + W A G+ S+ +
Sbjct: 65 EWLPRCAGGYKLGIRFENW--SEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSE 121
Score = 31.6 bits (70), Expect = 2.2
Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 8/124 (6%)
Query: 83 IVVGAGSAGAVVANRLSEI--ENWKILLLEAGGDET---DISDVPVLAAYLQLSGLDWSY 137
++VG G+AG + A+ L + + L+E+G + + + GLD
Sbjct: 6 VIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIGVGEATFSTVRHFFDYLGLDE-R 64
Query: 138 KTEPSSTSCLAMEHNRCNWPRGKVVGGSSVLNYMLYVRGNRNDYNHWESLGNPGWGAAEA 197
+ P + NW + L V N W ++G+ +EA
Sbjct: 65 EWLPRCAGGYKLGIRFENW--SEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSEA 122
Query: 198 LYYF 201
Y
Sbjct: 123 CYLT 126
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 36.8 bits (86), Expect = 0.047
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESPLS 742
D ++ G G GA++A L ++ +V+++E E ++
Sbjct: 3 TDNHIDVLINGCGIGGAMLAYLLG-RQGHRVVVVEQARRERAIN 45
Score = 29.9 bits (68), Expect = 5.3
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDISDVPVLAA 126
D ++ G G GA++A L + +++++E E I+ +L
Sbjct: 6 HIDVLINGCGIGGAMLAYLLGR-QGHRVVVVEQARRERAINGADLLKP 52
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 36.9 bits (86), Expect = 0.049
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
+YD +V+GGGS G + ++ K +L+
Sbjct: 107 DYDLIVIGGGSGGLAAGKEAAKYGA-KTAVLDY 138
Score = 31.9 bits (73), Expect = 1.5
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 79 EYDFIVVGAGSAGAVVANRLSE 100
+YD IV+G GS G ++
Sbjct: 107 DYDLIVIGGGSGGLAAGKEAAK 128
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.5 bits (81), Expect = 0.050
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 17/87 (19%)
Query: 1176 NAPTIMIAEKACDLIKEDWGVMEGRERSRGQPTTNEGNERS-----REQPRTS--EGNER 1228
+ E I++ W RE R + + + RE+ + E N+R
Sbjct: 75 AQADRLTQEPES--IRK-W-----REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR 126
Query: 1229 SREQPRTNKENGRSRDRQ--ADTESET 1253
EQ NK N R D+ +++
Sbjct: 127 QSEQVEKNKINNRIADKAFYQQPDADI 153
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 36.8 bits (86), Expect = 0.056
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 695 PLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
P++ Y +YD +V+GGGSAG A+ +V L+
Sbjct: 3 PVQGSY-DYDLIVIGGGSAGLACAKEAVLNGA-RVACLDF 40
Score = 32.5 bits (75), Expect = 0.95
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 79 EYDFIVVGAGSAGAVVANR 97
+YD IV+G GSAG A
Sbjct: 9 DYDLIVIGGGSAGLACAKE 27
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 36.9 bits (84), Expect = 0.056
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 689 HLIPDVPLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
+ + +++G G +G AR+L V LLEA
Sbjct: 265 GIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEA 309
Score = 36.9 bits (84), Expect = 0.058
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 37 AASAVSNVAWFAPLLAATVAFF--QYGVKDSAPESMNKAEPLYPEYDFIVVGAGSAGAVV 94
+ +L V + ++G+ + K P I++G+G +G
Sbjct: 234 TLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAA 293
Query: 95 ANRLSEIENWKILLLEA 111
A +L + LLEA
Sbjct: 294 ARQLQS-FGMDVTLLEA 309
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 36.4 bits (85), Expect = 0.060
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735
+D +V+GGGS G A+ + Q KV + +
Sbjct: 6 SFDLLVIGGGSGGLACAKEAA-QLGKKVAVADYV 38
Score = 32.5 bits (75), Expect = 0.88
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 79 EYDFIVVGAGSAGAVVANR 97
+D +V+G GS G A
Sbjct: 6 SFDLLVIGGGSGGLACAKE 24
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 36.4 bits (85), Expect = 0.069
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
+YD +++GGGS G A+ ++ KV++L+
Sbjct: 32 DYDLIIIGGGSGGLAAAKEAAQYGK-KVMVLDF 63
Score = 34.5 bits (80), Expect = 0.23
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 59 QYGVKDSAPESMNKAEPLYPEYDFIVVGAGSAGAVVANR 97
G + PE + K+ +YD I++G GS G A
Sbjct: 16 PRGSHMNGPEDLPKSY----DYDLIIIGGGSGGLAAAKE 50
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 36.0 bits (84), Expect = 0.079
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 65 SAPESMNKAEPLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114
+ +++ E D +VVGAG +G RL E + ++E GD
Sbjct: 2 AGQTTVDSRRQPPEEVDVLVVGAGFSGLYALYRLRE-LGRSVHVIETAGD 50
Score = 32.5 bits (75), Expect = 1.1
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE 737
E D +VVG G +G RL E V ++E G+
Sbjct: 16 EVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGD 50
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 36.0 bits (82), Expect = 0.080
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 688 EHLIPDVPLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA----GGEESPLSD 743
H L YD +++G G +++ LS K+L+L+ GGE + L+
Sbjct: 6 HHSSGRENLYFQGEHYDVIILGTGLKECILSGLLSHY-GKKILVLDRNPYYGGETASLNL 64
Query: 744 IPCTYPALQTSPLDWQYKTEPNDRACLG 771
+ +Y + L
Sbjct: 65 TNLYNTFKPKENIPSKYGENRHWNVDLI 92
Score = 34.1 bits (77), Expect = 0.28
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEA----GGDETDISDVPVLAAYLQLSGLD 134
YD I++G G +++ LS KIL+L+ GG+ ++ + + +
Sbjct: 20 HYDVIILGTGLKECILSGLLSH-YGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIP 78
Query: 135 WSYKTEPSSTSCLAMEHNRCNWPRGKVV 162
Y L + G +V
Sbjct: 79 SKYGENRHWNVDL---IPKFILVGGNLV 103
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 35.9 bits (83), Expect = 0.094
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 706 VVVGGGSAGAVVARRLSEQ-KNWKVLLLEA 734
VVVGGG+ GA A+ + + +V L+E
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEP 35
Score = 32.0 bits (73), Expect = 1.4
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 83 IVVGAGSAGAVVANRLSEIE-NWKILLLEA 111
+VVG G+ GA A + + + ++ L+E
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEP 35
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 35.4 bits (80), Expect = 0.10
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 704 DFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735
++G G AG A+ L+ +V L +
Sbjct: 4 PIAIIGTGIAGLSAAQALT-AAGHQVHLFDKS 34
Score = 33.9 bits (76), Expect = 0.31
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 81 DFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112
++G G AG A L+ ++ L +
Sbjct: 4 PIAIIGTGIAGLSAAQALTA-AGHQVHLFDKS 34
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 35.6 bits (81), Expect = 0.11
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 698 EMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA----GGEESPLSDIPCTYPALQT 753
M EYD +V+G G +++ +S KVL ++ GGE S ++ + Y Q
Sbjct: 2 HMDEEYDVIVLGTGLTECILSGIMS-VNGKKVLHMDRNPYYGGESSSITPLEELYKRFQL 60
Query: 754 SPLDWQYKTEPNDR 767
+ D
Sbjct: 61 LEGPPETMGRGRDW 74
Score = 30.2 bits (67), Expect = 4.7
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWKILLLEA----GGDETDISDVPVLAAYLQLSGLD 134
EYD IV+G G +++ +S K+L ++ GG+ + I+ + L QL
Sbjct: 6 EYDVIVLGTGLTECILSGIMSV-NGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGP 64
Query: 135 WSY 137
Sbjct: 65 PET 67
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 35.9 bits (83), Expect = 0.11
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 685 EDLEHLIPDVPLEEMYPEYDFVVVGGGSAG---AVVARRLSEQKNWKVLLLE 733
+ E D E+ E D +++GGG +G A A ++ KV L+E
Sbjct: 6 KKYELYKADEVPTEVV-ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
Score = 35.5 bits (82), Expect = 0.12
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 63 KDSAPESMNKAEPLYPEYDFIVVGAGSAG---AVVANRLSEIENWKILLLE 110
K ++ E D +++G G +G A A +++ K+ L+E
Sbjct: 6 KKYELYKADEVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 35.8 bits (83), Expect = 0.11
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLE----AGG 736
+VVG GSAG + + V+L++ +GG
Sbjct: 121 TTQVLVVGAGSAGFNASLAAKKAGA-NVILVDKAPFSGG 158
Score = 33.9 bits (78), Expect = 0.36
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 52 AATVAFFQYGVKDSAPESMNKAEPLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLE- 110
A + G + A P +VVGAGSAG + + ++L++
Sbjct: 95 AKKKKSWDDGWDQDKIQKAIAAGPSE-TTQVLVVGAGSAGFNASLAAKK-AGANVILVDK 152
Query: 111 ---AGG 113
+GG
Sbjct: 153 APFSGG 158
Score = 33.9 bits (78), Expect = 0.38
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 292 ISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVIL-SGGAVNSPQILM 344
L+S V K++++ + +G H + + K V+L +GG + +++
Sbjct: 267 TRLNSRVVKLVVNDDHS-VVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMIA 319
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 35.0 bits (80), Expect = 0.16
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGG 736
+ VVGGG +G VA L + +LLE+
Sbjct: 15 TGMNVAVVGGGISGLAVAHHLR-SRGTDAVLLESSA 49
Score = 30.7 bits (69), Expect = 3.5
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 71 NKAEPLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGG 113
+ P + VVG G +G VA+ L +LLE+
Sbjct: 8 HHHMPRTTGMNVAVVGGGISGLAVAHHLRS-RGTDAVLLESSA 49
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 34.9 bits (80), Expect = 0.17
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
+D +V+GGG G R L+ +K LLLEA
Sbjct: 40 WDVIVIGGGYCGLTATRDLTVA-GFKTLLLEA 70
Score = 34.1 bits (78), Expect = 0.31
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 65 SAPESMNKAEPLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEA 111
S P ++ + P +D IV+G G G L+ +K LLLEA
Sbjct: 26 SPPTNIEDTDKDGP-WDVIVIGGGYCGLTATRDLTV-AGFKTLLLEA 70
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 35.2 bits (81), Expect = 0.18
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 697 EEMYPEYDFVVVGGGSAG---AVVARRLSEQKN--WKVLLLEAGGE 737
E D V+VG G AG A ++L+ Q +V L+E
Sbjct: 32 FAE--EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 75
Score = 31.3 bits (71), Expect = 2.7
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 79 EYDFIVVGAGSAGAVVANRLSEIENWK-----ILLLEAGGD 114
E D ++VGAG AG A RL ++ + L+E
Sbjct: 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 75
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae}
PDB: 3u5g_H
Length = 190
Score = 34.3 bits (78), Expect = 0.19
Identities = 4/63 (6%), Positives = 8/63 (12%), Gaps = 4/63 (6%)
Query: 1199 GRERSRGQPTTNEGNERSREQPRTSEGNERSREQPRTNKENGRSR-DRQADT---ESETQ 1254
RE + + K R +
Sbjct: 46 IREIDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRT 105
Query: 1255 PNK 1257
+
Sbjct: 106 SRQ 108
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 34.9 bits (81), Expect = 0.20
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 62 VKDSAPESMNKAEPLYP---EYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114
+ P S+ A YD +VVGAG AG +R + + EA
Sbjct: 1 MNGQHPRSVVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRS-QGLTVRAFEAASG 55
Score = 32.6 bits (75), Expect = 1.1
Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE 737
YD VVVG G AG R Q V EA
Sbjct: 20 TSYDVVVVGAGIAGLYAIHRFRSQ-GLTVRAFEAASG 55
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 34.4 bits (80), Expect = 0.21
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735
+ + + VV+GGG G +A L++ + +V ++E
Sbjct: 2 LPEKSEIVVIGGGIVGVTIAHELAK-RGEEVTVIEKR 37
Score = 30.2 bits (69), Expect = 4.3
Identities = 7/35 (20%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAG 112
+ + +V+G G G +A+ L++ ++ ++E
Sbjct: 4 EKSEIVVIGGGIVGVTIAHELAK-RGEEVTVIEKR 37
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 34.7 bits (80), Expect = 0.24
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLE 733
D VVVG G AG A ++ KV+L+E
Sbjct: 126 TVDVVVVGSGGAGFSAAISATDSGA-KVILIE 156
Score = 33.9 bits (78), Expect = 0.42
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 63 KDSAPESMNKAEPLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLE 110
KD + A + D +VVG+G AG A ++ K++L+E
Sbjct: 110 KDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATD-SGAKVILIE 156
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 34.5 bits (80), Expect = 0.28
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE 737
D VV+G G G +L + + +
Sbjct: 7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG 43
Score = 34.1 bits (79), Expect = 0.32
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 70 MNKAEPLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114
M D +V+GAG G ++L + +
Sbjct: 1 MTAQTT--HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG 43
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 34.5 bits (80), Expect = 0.29
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 78 PEYDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGD 114
P D +V+GAG G A +++ K+L +EAG D
Sbjct: 8 PALDAVVIGAGVTGIYQAFLINQ-AGMKVLGIEAGED 43
Score = 32.9 bits (76), Expect = 0.76
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGE 737
P D VV+G G G A +++ KVL +EAG +
Sbjct: 8 PALDAVVIGAGVTGIYQAFLINQA-GMKVLGIEAGED 43
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 34.4 bits (77), Expect = 0.29
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 706 VVVGGGSAGAVVARRLSE--QKNWKVLLLEAGGEESPLSDIPCTYPALQTSPLDWQYKTE 763
++VGGG+AG + A L + Q + LL+A + L T P LQT+ D+ E
Sbjct: 29 LIVGGGTAGWMAASYLGKALQGTADITLLQA-PDIPTLGVGEATIPNLQTAFFDFLGIPE 87
Query: 764 PND----RACLGLNGRRSNW 779
A + + NW
Sbjct: 88 DEWMRECNASYKVAIKFINW 107
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 34.3 bits (79), Expect = 0.31
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 702 EYDFVVVGGGSAG---AVVARRLSEQKNWKVLLLE 733
D V++G G AG AV AR KV+LLE
Sbjct: 126 TTDVVIIGSGGAGLAAAVSAR----DAGAKVILLE 156
Score = 33.2 bits (76), Expect = 0.65
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 64 DSAPESMNKAEPLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLLE 110
D A + A + D +++G+G AG A + K++LLE
Sbjct: 111 DKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARD-AGAKVILLE 156
Score = 30.1 bits (68), Expect = 6.4
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 292 ISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVIL-SGGAVNSPQILM 344
I L+S V ++L D + GV + + + V++ +GG + + +
Sbjct: 272 IRLNSRVVRILEDASGK-VTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVS 324
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 33.8 bits (78), Expect = 0.39
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 292 ISLHSHVTKVLIDPKNRMAIGVEFVKNHQRHVIRARKEVIL-SGG 335
V ++ D R +G+ + + +RAR+ V+L +G
Sbjct: 219 AEYDMRVQTLVTDDTGR-VVGIVAKQYGKEVAVRARRGVVLATGS 262
Score = 33.8 bits (78), Expect = 0.39
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLE----AGG 736
E D VV G G AG + + VL+LE GG
Sbjct: 41 EADVVVAGYGIAGVAASIEAARAGA-DVLVLERTSGWGG 78
Score = 30.8 bits (70), Expect = 3.8
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 79 EYDFIVVGAGSAGAVVA 95
E D +V G G AG +
Sbjct: 41 EADVVVAGYGIAGVAAS 57
Score = 29.6 bits (67), Expect = 8.5
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 931 DGQMRATGVVVKKGRKDPVLVRARREVILSAG 962
D R G+V K+ K V VRARR V+L+ G
Sbjct: 231 DDTGRVVGIVAKQYGK-EVAVRARRGVVLATG 261
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 33.3 bits (77), Expect = 0.45
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 702 EYDFVVVGGGSAG---AVVARRLSEQKNWKVLLLEAGG 736
++D +++GG AG A+ R +LL++AG
Sbjct: 2 KFDVIIIGGSYAGLSAALQLGR----ARKNILLVDAGE 35
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 32.9 bits (76), Expect = 0.56
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 697 EEMYPEYDFVVVGGGSAG---AVVARRLSEQKNWKVLLLEAG 735
M D V+G G AG ++V R ++ L +
Sbjct: 2 NAM-KYIDCAVIGAGPAGLNASLVLGR----ARKQIALFDNN 38
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 33.5 bits (76), Expect = 0.59
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 703 YDFVVVGGGSAGAVVARRLSEQ-KNWKVLLLEAGG 736
V+VGGG G A + + LLEAG
Sbjct: 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGE 39
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 33.0 bits (76), Expect = 0.69
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLL 732
D +++G G+AG +A RL++Q +V++L
Sbjct: 8 SCDVLIIGSGAAGLSLALRLADQH--QVIVL 36
Score = 30.3 bits (69), Expect = 5.3
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 70 MNKAEPLYPEYDFIVVGAGSAGAVVANRLSEIENWKILLL 109
MN D +++G+G+AG +A RL+ + ++++L
Sbjct: 1 MNTLPEH--SCDVLIIGSGAAGLSLALRLA--DQHQVIVL 36
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 32.9 bits (74), Expect = 0.70
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 697 EEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA----GGEESPLS 742
E + +YD +V+G G +++ LS KVL ++ GGE + ++
Sbjct: 6 ETIDTDYDVIVLGTGITECILSGLLSVDGK-KVLHIDKQDHYGGEAASVT 54
Score = 30.2 bits (67), Expect = 5.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 73 AEPLYPEYDFIVVGAGSAGAVVANRLS 99
E + +YD IV+G G +++ LS
Sbjct: 5 QETIDTDYDVIVLGTGITECILSGLLS 31
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 32.9 bits (76), Expect = 0.84
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735
D ++G G+AG R + KV+L+E G
Sbjct: 8 NVDVAIIGTGTAGMGAYRAAK-KHTDKVVLIEGG 40
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 32.8 bits (75), Expect = 0.89
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 694 VPLEEMYPEYDFVVVGGGSAGAVVARRL-SEQKNWKVLLLEAGGEES-------PLS 742
VP ++ F+++GGG+A AR + + +VL++ E+ PLS
Sbjct: 3 VPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIV---SEDPELPYMRPPLS 56
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 32.6 bits (74), Expect = 0.91
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 701 PEYDFVVVGGGSAGAVVARRLSEQ-----KNWKVLLLEAGG 736
+ V++GGG G A + ++ ++ L+EA
Sbjct: 4 GKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP 44
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate
porphyria disease, VP oxidoreductase-oxidoreductase
inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 32.7 bits (74), Expect = 0.92
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 706 VVVGGGSAGAVVARRLSEQ-KNWKVLLLEAGG 736
VV+GGG +G + LS KV+L+E+
Sbjct: 6 VVLGGGISGLAASYHLSRAPCPPKVVLVESSE 37
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET: TRP
FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 32.7 bits (73), Expect = 1.0
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 701 PEYDFVVVGGGSAGAVVARRLSE--QKNWKVLLLEAGGEESPLSDIPCTYPALQTSPLDW 758
P + V+VGGG+AG + A L Q+ + L+E+ + T P+LQ D+
Sbjct: 4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIES-AAIPRIGVGEATIPSLQKVFFDF 62
Query: 759 QYKTE----PNDRACLGLNGRRSNW 779
E P + NW
Sbjct: 63 LGIPEREWMPQVNGAFKAAIKFVNW 87
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 32.4 bits (74), Expect = 1.1
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 706 VVVGGGSAGAVVARRLSEQ--KNWKVLLLE 733
V++G G+ G A + E +V L+
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLIS 37
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 32.2 bits (74), Expect = 1.1
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 9/38 (23%)
Query: 702 EYDFVVVGGGSAGAVVAR----RLSEQKNWKVLLLEAG 735
D +V+GGG GA +A R VL+LEA
Sbjct: 3 TKDLIVIGGGINGAGIAADAAGR-----GLSVLMLEAQ 35
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 32.3 bits (74), Expect = 1.1
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 9/38 (23%)
Query: 702 EYDFVVVGGGSAGAVVAR----RLSEQKNWKVLLLEAG 735
+ D +V+GGG GA +A R + L+E
Sbjct: 18 QLDLLVIGGGITGAGIALDAQVR-----GIQTGLVEMN 50
>2pim_A Phenylacetic acid degradation-related protein; thioesterase
superfamily, phenylacetic acid degradation-RELA protein;
2.20A {Ralstonia eutropha JMP134}
Length = 141
Score = 30.8 bits (70), Expect = 1.1
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 19/60 (31%)
Query: 887 AHGTLKNGLRCSTAKAYLRPIIARPNLHVSLHSHAYRVHFEPGPDGQMRATGVVVKKGRK 946
TL++G CST NL++S P G +R + ++GR
Sbjct: 73 VTATLEDGASCSTL-----------NLNLSFLR--------PAQAGLLRGRARLERRGRN 113
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family
DNA polymerase, translesion DNA synthesis, lesion
bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7
PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Length = 459
Score = 32.2 bits (73), Expect = 1.3
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 345 LSGIGPK--DHLTDMGIKTIQDL-KVGYNLQDHVGLGGFTFLIN 385
+SGIG L +GI T +L + L + + ++
Sbjct: 287 VSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLH 330
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 32.1 bits (74), Expect = 1.3
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
Query: 703 YDFVVVGGGSAG---AVVARRLSEQKNWKVLLLEAG 735
YD +V+GGG +G A+ A ++ VLLL+ G
Sbjct: 27 YDVIVIGGGPSGLMAAIGAA----EEGANVLLLDKG 58
Score = 29.8 bits (68), Expect = 6.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 80 YDFIVVGAGSAG---AVVANRLSEIENWKILLLEAG 112
YD IV+G G +G A+ A E +LLL+ G
Sbjct: 27 YDVIVIGGGPSGLMAAIGAAE----EGANVLLLDKG 58
>3iuk_A Uncharacterized protein; PF05960.1, DUF885, M32 carboxypeptidase-like
fold, PSI, MCSG structural genomics, protein structure
initiative; 1.85A {Arthrobacter aurescens}
Length = 562
Score = 32.3 bits (73), Expect = 1.3
Identities = 10/83 (12%), Positives = 17/83 (20%), Gaps = 1/83 (1%)
Query: 1049 KLRTADPLDHPMIRPNYLYDEKDLKTLVEGAKIGYAITRTKAMKRFNPVLHNVTIPGCEH 1108
+ D M L D L V+ A L + +P
Sbjct: 177 RYAAEDGFFAKMAADASLGDA-PLPAEVQDKLDAGTSAARSAYSALGAFLRDELLPVAPE 235
Query: 1109 TTPLSDAYWECQVRHYTMTIYHP 1131
+ + R +
Sbjct: 236 KDAVGRERYSLASRSFIGAEVDL 258
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 32.0 bits (73), Expect = 1.3
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 706 VVVGGGSAGAVVARRLSEQKNWKVLLLEA----GG 736
VVVG G G + L+ + ++++LE GG
Sbjct: 4 VVVGAGLGGLLAGAFLA-RNGHEIIVLEKSAMIGG 37
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 31.7 bits (73), Expect = 1.5
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLE 733
M + +++G G+AG A +L++ V + +
Sbjct: 1 MSQYSENIIIGAGAAGLFCAAQLAKLGK-SVTVFD 34
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 31.9 bits (73), Expect = 1.5
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 9/38 (23%)
Query: 702 EYDFVVVGGGSAGAVVAR----RLSEQKNWKVLLLEAG 735
E D +++GGG GA VA K L+E
Sbjct: 32 ELDLLIIGGGITGAGVAVQAAAS-----GIKTGLIEMQ 64
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 32.0 bits (73), Expect = 1.5
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 706 VVVGGGSAGAVVARRLSEQ-KNWKVLLLE 733
VV+GGG G A L + K+ L+
Sbjct: 6 VVIGGGVGGIATAYNLRNLMPDLKITLIS 34
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 31.7 bits (73), Expect = 1.5
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 699 MYPEYDFVVVGGGSAG---AVVARRLSEQKNWKVLLLEAG 735
+ + D V++G G+AG A+ A + + +VL+++
Sbjct: 24 VAEKQDVVIIGAGAAGMMCAIEAGK----RGRRVLVIDHA 59
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex,
Y-family DNA polym translesion synthesis, nucleoside
triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens}
PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A*
2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A*
3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 3h4d_A* 3h4b_A*
...
Length = 420
Score = 31.6 bits (72), Expect = 1.6
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 340 PQILMLSGIGPK--DHLTDMGIKTIQDLK 366
I + GIG K L +GI +++DL+
Sbjct: 234 NHIKEIPGIGYKTAKCLEALGINSVRDLQ 262
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 31.0 bits (71), Expect = 1.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 703 YDFVVVGGGSAG---AVVARRLSEQKNWKVLLLEAGG 736
+D +VVGGG +G A+ R KVL+L+ G
Sbjct: 2 WDVIVVGGGPSGLSAALFLAR----AGLKVLVLDGGR 34
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 31.3 bits (72), Expect = 1.7
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 691 IPDVPLEEMYPEYDFVVVGGGSAG---AVVARRLSEQKNWKVLLLE---AGG 736
+ V EE ++D V+VG G+AG AV A R + V +L+ AGG
Sbjct: 5 LHAVSSEEKERDFDVVIVGAGAAGFSAAVYAAR----SGFSVAILDKAVAGG 52
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral
protein; HET: MLR; 2.29A {Escherichia coli}
Length = 523
Score = 31.7 bits (72), Expect = 1.9
Identities = 26/126 (20%), Positives = 39/126 (30%), Gaps = 7/126 (5%)
Query: 25 QMSGVAETIPSLAASAVSNVAWFA--PLLAATVAFFQYGVKDSAPES--MNKA-EPLYPE 79
+ V + P A + S A P +AAT+ Q G P M+ +
Sbjct: 290 GLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGE--IMPNIPQMSAFWYAVRTA 347
Query: 80 YDFIVVGAGSAGAVVANRLSEIENWKILLLEAGGDETDISDVPVLAAYLQLSGLDWSYKT 139
G + A +A + L E D+ A SGLD +
Sbjct: 348 VINAASGRQTVDAALAAAQTNAAAMDDLDALLADKEGGGMDLKPFARTNPFSGLDCLWCR 407
Query: 140 EPSSTS 145
EP +
Sbjct: 408 EPLTEV 413
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics,
protein structure initiative; 2.06A {Bacillus subtilis}
Length = 206
Score = 30.8 bits (70), Expect = 2.0
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 689 HLIPDVPLEEMYPEYDFVVVGGGSAGAVVARRLSE 723
D + ++ +V+ GG + + ++L
Sbjct: 50 KTSVDYIIGLEPANFNLLVMIGGDSWSNDNKKLLH 84
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 31.6 bits (71), Expect = 2.0
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 699 MYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAGGEESPLSD 743
M+ + VV+G G G A L+ + + V +L E S
Sbjct: 3 MHSQKRVVVLGSGVIGLSSALILARK-GYSVHILARDLPEDVSSQ 46
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 31.5 bits (71), Expect = 2.3
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 702 EYDFVVVGGGSAG---AVVARRLSEQKNW--KVLLLE 733
D ++VGGG A A R +++ K+LL++
Sbjct: 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVD 58
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 31.5 bits (72), Expect = 2.3
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 684 VEDLEHLIPDVPLEEMYPE--YDFVVVGGGSAG---AVVARRLSEQKNWKVLLLE 733
V ++ E + YD ++VG G AG AV + R K + L+
Sbjct: 192 VAKVDTGAEKRAAEALNKRDAYDVLIVGSGPAGAAAAVYSAR----KGIRTGLMG 242
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A
{Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19
c.37.1.19
Length = 780
Score = 31.4 bits (72), Expect = 2.3
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 345 LSGIGPK--DHLTDMGIKTIQDL 365
G+GP L +GI+T++DL
Sbjct: 120 AKGVGPNRKKKLKKLGIETLRDL 142
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein
structure initiative; HET: SO4 GOL; 1.49A {Clostridium
acetobutylicum atcc 824}
Length = 196
Score = 30.5 bits (69), Expect = 2.7
Identities = 15/126 (11%), Positives = 36/126 (28%), Gaps = 36/126 (28%)
Query: 626 NTNAPVIMIGEKGSDMIKQDWRKYIYSSFSTARIAMSYGPSIGFIL-------------L 672
+ + P I I D ++ + A+ +G + I +
Sbjct: 68 SVSIPSISIKVTRFDTMR---------AVYNAK---RFGNELALIAYKHSIVDKHEIEAM 115
Query: 673 FRYMISQYRP-DVEDLEHLIPDVPLEEMYPEYDFVVVGGGSAGAVVARRLSEQKNWKVLL 731
I ++ +++ LI + +VV G + ++
Sbjct: 116 LGVKIKEFLFSSEDEITTLI----SKVKTENIK-IVVSGK-----TVTDEAIKQGLYGET 165
Query: 732 LEAGGE 737
+ +G E
Sbjct: 166 INSGEE 171
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family,
transferase-D complex; HET: DNA MSE ADI; 1.70A
{Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB:
1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A*
1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A*
2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Length = 352
Score = 31.0 bits (71), Expect = 2.7
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 345 LSGIGPK--DHLTDMGIKTIQDLK 366
+ GIG + L +GI + D
Sbjct: 183 VPGIGNITAEKLKKLGINKLVDTL 206
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA;
2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1
e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Length = 354
Score = 31.0 bits (71), Expect = 2.7
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 345 LSGIGPK--DHLTDMGIKTIQDLK 366
+ GIG L ++GI+ ++D+
Sbjct: 184 IPGIGSVLARRLNELGIQKLRDIL 207
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding
nucleotide binding M binding, nucleus; HET: DNA TTD DTP;
3.34A {Homo sapiens}
Length = 517
Score = 31.1 bits (70), Expect = 2.8
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 345 LSGIGPK--DHLTDMGIKTIQDL-KVGYNLQDHVGLGGFTFLIN 385
+SGIG L +GI T +L + L + + ++
Sbjct: 343 VSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLH 386
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 30.8 bits (70), Expect = 2.9
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 706 VVVGGGSAGAVVARRLSEQ--KNWKVLLLE 733
+V+GG A L V ++
Sbjct: 5 LVLGGRFGALTAAYTLKRLVGSKADVKVIN 34
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix,
fidelity, processivity, transferase; 2.30A {Sulfolobus
solfataricus} SCOP: e.8.1.7
Length = 221
Score = 30.2 bits (69), Expect = 3.7
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 345 LSGIGPK--DHLTDMGIKTIQDLK 366
+ GIG L ++GI+ ++D+
Sbjct: 189 IPGIGSVLARRLNELGIQKLRDIL 212
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 30.5 bits (69), Expect = 3.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEAG 735
+ ++G G+AG +A L + V++LE G
Sbjct: 4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKG 37
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 30.6 bits (70), Expect = 4.1
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 82 FIVVGAGSAGAVVANRLSEI-ENWKILLLEAGGD 114
++++G +AG A ++ EN ++ LE G
Sbjct: 39 YVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEI 72
Score = 29.8 bits (68), Expect = 7.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 705 FVVVGGGSAGAVVA---RRLSEQKNWKVLLLEAG 735
+V++GG +AG A R E N V+ LE G
Sbjct: 39 YVIIGGDAAGMSAAMQIVRNDE--NANVVTLEKG 70
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 29.0 bits (65), Expect = 4.3
Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 15/72 (20%)
Query: 83 IVVGAGSAGAVVANRLSEIENWKILL----------LEAGGDET---DISDVPVLAAYLQ 129
VVGAG G ++A L N+ + + L G T D D LA L
Sbjct: 9 CVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALG 68
Query: 130 LSGLDWSYKTEP 141
G D P
Sbjct: 69 --GFDAVISAAP 78
Score = 28.6 bits (64), Expect = 5.4
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 706 VVVGGGSAGAVVARRLSEQKNWKVLLL 732
VVG G G ++A L N+ V +
Sbjct: 9 CVVGAGKIGQMIAALLKTSSNYSVTVA 35
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 29.7 bits (66), Expect = 4.7
Identities = 4/24 (16%), Positives = 9/24 (37%), Gaps = 4/24 (16%)
Query: 199 YYFKKSEDNRNQYL---AETPYHN 219
++ ++L E P+ N
Sbjct: 151 LELSDTKQKGKKFLVIAYE-PFEN 173
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 30.1 bits (66), Expect = 4.7
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 704 DFVVVGGGSAGAVVARRLSEQ--KNWKVLLLEAGG 736
++VG G G++ A L Q + + +
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD 37
Score = 30.1 bits (66), Expect = 5.5
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 81 DFIVVGAGSAGAVVANRLSE--IENWKILLLEAGGD 114
++VGAG G++ A L + + + D
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD 38
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 29.3 bits (66), Expect = 5.0
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 701 PEYDFVVVGGGSAGAVVARRLSEQKNWKVLLLEA 734
+++G G G L + L +E
Sbjct: 38 GHAQVLILGMGRIGTGAYDELRARYGKISLGIEI 71
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 30.3 bits (69), Expect = 5.7
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 82 FIVVGAGSAGAVVANRLSEI-ENWKILLLEAGGD 114
+VVG + GA VA RL + E +I+++E G
Sbjct: 39 IVVVGGVAGGASVAARLRRLSEEDEIIMVERGEY 72
Score = 29.9 bits (68), Expect = 7.6
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 5/34 (14%)
Query: 705 FVVVGGGSAGAVVA---RRLSEQKNWKVLLLEAG 735
VVVGG + GA VA RRLSE +++++E G
Sbjct: 39 IVVVGGVAGGASVAARLRRLSE--EDEIIMVERG 70
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex;
HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 29.5 bits (67), Expect = 5.8
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 79 EYDFIVVGAGSAG---AVVANRL 98
Y ++VGAG +G A +
Sbjct: 3 AYQVLIVGAGFSGAETAFWLAQK 25
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 30.3 bits (69), Expect = 5.8
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 83 IVVGAGSAGAVVANRLSEI-ENWKILLLEAGGD 114
+++G + GA A R + E +I++ E G
Sbjct: 5 LIIGGVAGGASAAARARRLSETAEIIMFERGEY 37
Score = 29.5 bits (67), Expect = 9.0
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 706 VVVGGGSAGAVVA---RRLSEQKNWKVLLLEAG 735
+++GG + GA A RRLSE ++++ E G
Sbjct: 5 LIIGGVAGGASAAARARRLSE--TAEIIMFERG 35
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Length = 236
Score = 29.5 bits (67), Expect = 5.9
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 690 LIPDVPLEEMYPEYDFVVVGGGSAGA 715
+ D + E+ E D V++ G G
Sbjct: 69 VKTDGHVSEV-KEQDVVLITSGYRGI 93
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 29.8 bits (68), Expect = 6.1
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 83 IVVGAGSAGAVVANRLSEI-ENWKILLLEAGGD 114
+++G G+AG A+R+ + W + + EA
Sbjct: 7 VIIGGGAAGMSAASRVKRLKPEWDVKVFEATEW 39
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 29.8 bits (68), Expect = 6.2
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 83 IVVGAGSAGAVVANRLSEI-ENWKILLLEAGGD 114
+V+GA + G A R + + +++
Sbjct: 7 VVIGAVALGPKAACRFKRLDPEAHVTMIDQASR 39
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 29.8 bits (68), Expect = 6.3
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 83 IVVGAGSAGAVVANRLSEI-ENWKILLLEAGGD 114
+VVGA + GA A+++ + + I++ E D
Sbjct: 5 VVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 30.1 bits (69), Expect = 6.3
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 75 PLYPE-YDFIVVGAGSAG---AVVANRL 98
P YD IVVGAG AG A+ R
Sbjct: 16 PRGSHMYDVIVVGAGHAGCEAALAVARG 43
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 29.8 bits (68), Expect = 6.6
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 82 FIVVGAGSAGAVVANRLSEI-ENWKILLLEAGGD 114
+++GA AG A + +I L++
Sbjct: 5 IVIIGASFAGISAAIASRKKYPQAEISLIDKQAT 38
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 29.7 bits (66), Expect = 6.7
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 64 DSAPESMNKAEPLYPEYDFIVVGAGSAGAVVANRLSE 100
M +A +D I VG G + +A L E
Sbjct: 15 VPRGSHMTQATATAVVHDLIGVGFGPSNIALAIALQE 51
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_K 2l5i_A 2l5j_A*
Length = 437
Score = 29.8 bits (66), Expect = 7.1
Identities = 10/58 (17%), Positives = 19/58 (32%)
Query: 1200 RERSRGQPTTNEGNERSREQPRTSEGNERSREQPRTNKENGRSRDRQADTESETQPNK 1257
+G+ E R + +R R++ R +K R +R D +
Sbjct: 342 GPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQ 399
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 7.2
Identities = 10/95 (10%), Positives = 25/95 (26%), Gaps = 33/95 (34%)
Query: 773 NGRRSNWPRGKVIGGSSV--LNAM------LYVRGNRRDYDAWEAAGNEGWSYRDTLPYF 824
+ + GS + ++A+ + ++
Sbjct: 1035 MYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQN------------------DIL 1076
Query: 825 IKSESVNISSLVDSPYHGTQGPLSVEEFRYYSPVT 859
+S +S+ V+ + GP +PV
Sbjct: 1077 QESFINTMSAWVNMLLISSSGP-------IKTPVG 1104
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 28.4 bits (64), Expect = 7.2
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 702 EYDFVVVGGGSAGAVVARRLSEQKNWKVLLLE 733
Y+++V+G +AG + R L+ KVL ++
Sbjct: 6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVD 36
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 29.9 bits (67), Expect = 7.5
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 62 VKDSAPESMNKAEPLYPEYDFIVVGAGSAGAVVANRLS 99
+ ++P + E + + D ++VG G AG +A +L+
Sbjct: 15 IAPASPLAPAHTEAVPSQVDVLIVGCGPAGLTLAAQLA 52
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 29.8 bits (68), Expect = 7.6
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 83 IVVGAGSAGAVVANRLSEI-ENWKILLLEAGGD 114
IV+G+ G L + + +I E G
Sbjct: 4 IVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF 36
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 29.8 bits (68), Expect = 7.8
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 83 IVVGAGSAGAVVANRLSEI-ENWKILLLEAGGD 114
IVVG AG + + + E +
Sbjct: 4 IVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN 36
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 29.8 bits (68), Expect = 8.6
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 79 EYDFIVVGAGSAG---AVVANRL 98
E+D +V+G G AG A+ A R+
Sbjct: 27 EFDVVVIGGGHAGIEAALAAARM 49
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA,
GIDA; tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 29.3 bits (67), Expect = 9.3
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 79 EYDFIVVGAGSAG---AVVANRL 98
+D I++G G AG A+ A R+
Sbjct: 28 PFDVIIIGGGHAGTEAAMAAARM 50
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 29.7 bits (67), Expect = 9.4
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 706 VVVGGGSAGAVVARRLSEQKNWK-VLLLE 733
V++G G G +A L + W + +L+
Sbjct: 8 VIIGAGIVGTNLADELVT-RGWNNITVLD 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.412
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 20,566,331
Number of extensions: 1311371
Number of successful extensions: 3425
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3189
Number of HSP's successfully gapped: 308
Length of query: 1306
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1201
Effective length of database: 3,770,088
Effective search space: 4527875688
Effective search space used: 4527875688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (27.9 bits)