Query psy10432
Match_columns 440
No_of_seqs 573 out of 1175
Neff 11.0
Searched_HMMs 29240
Date Fri Aug 16 17:46:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 3.4E-36 1.2E-40 287.3 34.9 362 31-414 44-435 (451)
2 3o7q_A L-fucose-proton symport 100.0 4.3E-34 1.5E-38 271.7 34.2 348 31-406 42-426 (438)
3 4aps_A DI-OR tripeptide H+ sym 100.0 2.1E-30 7.3E-35 250.0 30.9 349 45-414 49-473 (491)
4 2gfp_A EMRD, multidrug resista 100.0 5.3E-33 1.8E-37 258.7 11.8 348 25-399 10-363 (375)
5 4gc0_A D-xylose-proton symport 100.0 3.1E-29 1.1E-33 241.8 27.5 376 32-429 29-476 (491)
6 2cfq_A Lactose permease; trans 100.0 1.1E-28 3.7E-33 232.6 17.0 363 25-412 17-399 (417)
7 2xut_A Proton/peptide symporte 99.9 1E-26 3.6E-31 226.0 18.7 362 33-413 30-503 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.6E-12 5.6E-17 123.3 14.2 157 31-195 268-432 (451)
9 2cfq_A Lactose permease; trans 99.3 7.9E-12 2.7E-16 117.3 13.1 145 49-201 258-404 (417)
10 3o7q_A L-fucose-proton symport 99.3 8.6E-11 2.9E-15 111.0 15.5 142 258-411 61-228 (438)
11 2xut_A Proton/peptide symporte 99.2 2.8E-10 9.7E-15 110.1 17.6 172 226-411 12-197 (524)
12 4aps_A DI-OR tripeptide H+ sym 99.2 1.5E-10 5.1E-15 111.1 15.1 173 227-413 14-197 (491)
13 2gfp_A EMRD, multidrug resista 99.2 9.6E-11 3.3E-15 108.2 10.5 135 258-407 35-169 (375)
14 4gc0_A D-xylose-proton symport 99.0 3E-09 1E-13 102.0 15.2 162 34-203 296-469 (491)
15 2g9p_A Antimicrobial peptide l 43.4 2.9 0.0001 19.7 -0.8 13 70-82 3-15 (26)
16 2dw3_A Intrinsic membrane prot 29.9 1.2E+02 0.0039 19.7 5.2 16 190-205 47-62 (77)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=3.4e-36 Score=287.30 Aligned_cols=362 Identities=8% Similarity=0.004 Sum_probs=279.1
Q ss_pred HHhhhhhHhhhHhhcCCChhhHHHHHHHHHHHHhhhhccccccccccchhHHHHHHhHHHHHh-hhhcc----cchhHHH
Q psy10432 31 DWIQGPYVYKVYKDYGYDEKNIALLYIAGFASSMIFGIVVGSIADKFGRKLICISYGIVYTLC-CLTKF----SSDFYIL 105 (440)
Q Consensus 31 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~-~~~~~----~~~~~~l 105 (440)
.....+.+|.+.+++ .+..+++++.++..+...+.++++|+++||+|||++++.+.++.+++ .++++ +++++.+
T Consensus 44 ~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (451)
T 1pw4_A 44 RKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVM 122 (451)
T ss_dssp HTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHH
T ss_pred HHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHH
Confidence 445677787778899 99999999888888888888889999999999999999999999998 67888 8999999
Q ss_pred HHHHHHHHHHHhhhccccchhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhhHHHHHH
Q psy10432 106 LYGRLFGGIATSILFSGFESWYVNEHLNYYLFPVEWLNLTFARATFGSGLFAIVSGFTAHFFADILN-LGPIAPFAVAIP 184 (440)
Q Consensus 106 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~~~~~~~~~ 184 (440)
+++|+++|++.+...+...+++. |++|+++|++++++.+.+.++|.++||.+++.+.+..| | |+.|++.++
T Consensus 123 ~~~~~l~G~~~~~~~~~~~~~i~------~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w--~~~f~~~~~ 194 (451)
T 1pw4_A 123 FVLLFLCGWFQGMGWPPCGRTMV------HWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDW--HAALYMPAF 194 (451)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHH------TTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCS--TTCTHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHH------HHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHH
Confidence 99999999999999888777777 99999999999999999999999999999999988888 9 778887777
Q ss_pred HHHHHHHHHHHhccccCCCCCccCCCC---------------ccchhh-hhhhhccCcchHHHHHHHHHHHhHHHHHHHh
Q psy10432 185 FLLGSTLFIYFCWEEHYDPKTAKSSLL---------------PNSMFS-SLKFLFTNPCLLTLGIVQSIYEGIMYTFIFV 248 (440)
Q Consensus 185 ~~~~~~~~~~~~~~e~~~~~~~~~~~~---------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (440)
..++..++.++.+||++++.+.+++++ ..+.++ ..++.+++|.++...+..++.....+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (451)
T 1pw4_A 195 CAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDW 274 (451)
T ss_dssp HHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666666667788665322111000 001111 1466788899988888877777776666554
Q ss_pred hhhhhhc-cC---CchhhHHHHHHHHHHHHHHHHHHHHhhcc--CCchhHHHHHHHHH-HHHHHHHHhhhccccchhhcc
Q psy10432 249 WTPVLEV-LS---PPLGLVFSCFMISIMIGSKIYSILILKYF--KPETMLTLTVYLAT-FSITVSTVLTSSLFDSRRVLS 321 (440)
Q Consensus 249 ~~~~~~~-~~---~~~g~~~~~~~~~~~~~~~~~g~l~~r~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 321 (440)
.+.+++. .+ .+.+...+...++.+++.++.+++.|| + ++|+.+..+..+.. ++.+.+ ... +.....
T Consensus 275 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~--- 347 (451)
T 1pw4_A 275 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVY-WMN--PAGNPT--- 347 (451)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHT-TSC--CTTCHH---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHH-HHh--cccCHH---
Confidence 4444433 34 567888999999999999999999997 8 88887776665555 333222 211 111111
Q ss_pred hhHHHHHHHHHHHhhhchhhhHHhHhccCCcchhhHHHHHHhhhhhhh-HHHHHHHHhhccccccCccchhhHHHHHHHH
Q psy10432 322 TNLCFVAFLIYEISVGMYCPVTGYLRGRIIPEKARATITNWLRVPTNF-ITCFTLIFIKNEDAEGGKLIAIHSVFVVCTA 400 (440)
Q Consensus 322 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (440)
.......+.+++.+...+....+..+..|+++||++.|+.+...++ +..++|.+. +.+.+ ..+++..|.+.++
T Consensus 348 --~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~---g~l~~-~~g~~~~~~~~~~ 421 (451)
T 1pw4_A 348 --VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV---GYTVD-FFGWDGGFMVMIG 421 (451)
T ss_dssp --HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-SSCSHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHH-hcCcHHHHHHHHH
Confidence 2344444555566667777888999999999999999999999999 999999954 66777 7788999999888
Q ss_pred HHHHHHHHHHHhhh
Q psy10432 401 CLLVALLASCVFKR 414 (440)
Q Consensus 401 ~~~~~~~~~~~~~~ 414 (440)
+.+++.++....++
T Consensus 422 ~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 422 GSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88887776665544
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=4.3e-34 Score=271.72 Aligned_cols=348 Identities=14% Similarity=0.100 Sum_probs=268.0
Q ss_pred HHhhhhhHhhhHhhcCCChhhHHHHHHHHHHHHhhhhccccccccccchhHHHHHHhHHHHHh-hhh---cccchhHHHH
Q psy10432 31 DWIQGPYVYKVYKDYGYDEKNIALLYIAGFASSMIFGIVVGSIADKFGRKLICISYGIVYTLC-CLT---KFSSDFYILL 106 (440)
Q Consensus 31 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~-~~~---~~~~~~~~l~ 106 (440)
.....+..|.+.+++|.|+.+++++.++..+...+..+++|+++||+|||++++.+.++.+++ .++ .++++++.++
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 121 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFL 121 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 466778888888999999999999888888888888899999999999999999999999998 666 7889999999
Q ss_pred HHHHHHHHHHhhhccccchhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhcc-------------
Q psy10432 107 YGRLFGGIATSILFSGFESWYVNEHLNYYLFPVEWLNLTFARATFGSGLFAIVSGFTAHFFA-DILN------------- 172 (440)
Q Consensus 107 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~g------------- 172 (440)
++|++.|++.+...+...+++. |++|+|+|++++++.+...++|.+++|.+++.+. +..+
T Consensus 122 ~~~~l~G~~~~~~~~~~~~~~~------~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 195 (438)
T 3o7q_A 122 VGLFIIAAGLGCLETAANPFVT------VLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPE 195 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHH
T ss_pred HHHHHHHhhHHHhhhhHHHHHH------HHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcc
Confidence 9999999999999887777777 9999999999999999999999999999999998 5443
Q ss_pred ------------cCchhhHHHHHHHHHHHHHHHHH-hccccCCCCCccCCCCccchhhhhhhhccCcchHHHHHHHHHHH
Q psy10432 173 ------------LGPIAPFAVAIPFLLGSTLFIYF-CWEEHYDPKTAKSSLLPNSMFSSLKFLFTNPCLLTLGIVQSIYE 239 (440)
Q Consensus 173 ------------w~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (440)
| |+.|++.+....+..++..+ ..||++++++++ ++.++.++++++++++|.++...+..++..
T Consensus 196 ~~~~~~~~~~~~w--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T 3o7q_A 196 QLSAYKHSLVLSV--QTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD--AKQGSFSASLSRLARIRHWRWAVLAQFCYV 271 (438)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC--SSTTSHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhH--HHHHHHHHHHHHHHHHHHHHHcCCccccccccc--ccccchhhhHHHHHhChHHHHHHHHHHHHH
Confidence 5 88886666555544443332 234443322121 133445667888999999998888777777
Q ss_pred hHHHHHHHhhhhh-h-hccC---CchhhHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHhhhccc
Q psy10432 240 GIMYTFIFVWTPV-L-EVLS---PPLGLVFSCFMISIMIGSKIYSILILKYFKPETMLTLTVYLATFSITVSTVLTSSLF 314 (440)
Q Consensus 240 ~~~~~~~~~~~~~-~-~~~~---~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (440)
..........+++ + +..+ .+.+.......++.+++.++.+++.|| +++|+.+..+..+..++.+.+ .+. +.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~-~~~--~~ 347 (438)
T 3o7q_A 272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLIS-AFA--GG 347 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHH-HHC--CH
T ss_pred HHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHH-HHc--CC
Confidence 6666665555555 4 2223 667888889999999999999999998 999998888877776665444 211 11
Q ss_pred cchhhcchhHHHHHHHHHHHhhhchhhhHHhHhccCCcchhhHHHHHHhhhhhhhHHHHHHHHhhccccccCccch-hhH
Q psy10432 315 DSRRVLSTNLCFVAFLIYEISVGMYCPVTGYLRGRIIPEKARATITNWLRVPTNFITCFTLIFIKNEDAEGGKLIA-IHS 393 (440)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~ 393 (440)
. ...+.+.+.+++.+...|...++..+..|++ ++++.++.. ...++..++|.+. +.+.+ ..+ ++.
T Consensus 348 --~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~---g~l~~-~~g~~~~ 413 (438)
T 3o7q_A 348 --H------VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVM---GFVSD-AAGNIPT 413 (438)
T ss_dssp --H------HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHH---HHHHH-HHTSSGG
T ss_pred --c------HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHH---HHHHH-HhcchHH
Confidence 1 1233334556677888898899988888866 888888777 6679999999955 66777 666 888
Q ss_pred HHHHHHHHHHHHH
Q psy10432 394 VFVVCTACLLVAL 406 (440)
Q Consensus 394 ~~~~~~~~~~~~~ 406 (440)
.|.+.+++.++..
T Consensus 414 ~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 414 AELIPALCFAVIF 426 (438)
T ss_dssp GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8887665554443
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=2.1e-30 Score=249.97 Aligned_cols=349 Identities=14% Similarity=0.097 Sum_probs=237.9
Q ss_pred cCCChhhHHHHHHHHHHHHhhhhccccccccc-cchhHHHHHHhHHHHHh-hhhcccchhHHHHHHHHHHHHHHhhhccc
Q psy10432 45 YGYDEKNIALLYIAGFASSMIFGIVVGSIADK-FGRKLICISYGIVYTLC-CLTKFSSDFYILLYGRLFGGIATSILFSG 122 (440)
Q Consensus 45 ~g~s~~~~~~~~~~~~~~~~l~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 122 (440)
+|.|..+.+++.++..+...+.+++.|+++|| +|||+++..+.++.+++ .++++++|++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999998888888777778899999999 89999999999999998 78889999999999999999999999888
Q ss_pred cchhhhccccccccccchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHhcccc
Q psy10432 123 FESWYVNEHLNYYLFPVEW--LNLTFARATFGSGLFAIVSGFTAHFFADILNLGPIAPFAVAIPFLLGSTLFIYFCWEEH 200 (440)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~e~ 200 (440)
..+++. |++|+++ |++++++.+...++|..+||.+++.+.+..|| ++.|.+.+...++..+...+..|+.
T Consensus 129 ~~~~~~------~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~--~~~f~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4aps_A 129 VSTLVG------TLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGY--HVAFSLAAIGMFIGLLVYYFGGKKT 200 (491)
T ss_dssp HHHHHH------HHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHH------HHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHhCccc
Confidence 777777 9999988 77888889999999999999999999999899 8888887666555444443333332
Q ss_pred CCCCCc-c-CCCCccchhhhh------------------------------------------------hh-----hccC
Q psy10432 201 YDPKTA-K-SSLLPNSMFSSL------------------------------------------------KF-----LFTN 225 (440)
Q Consensus 201 ~~~~~~-~-~~~~~~~~~~~~------------------------------------------------~~-----~~~~ 225 (440)
.+++++ + ++.+.++..+.. +. ..++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (491)
T 4aps_A 201 LDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHL 280 (491)
T ss_dssp CCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 221111 1 000111111100 00 0111
Q ss_pred --cchHHHHHHHHHHHhHHHHHHHhhhhhh--hccC---CchhhHHHHHHHHHHHHHHHHHHHHhhccCCchhHH-----
Q psy10432 226 --PCLLTLGIVQSIYEGIMYTFIFVWTPVL--EVLS---PPLGLVFSCFMISIMIGSKIYSILILKYFKPETMLT----- 293 (440)
Q Consensus 226 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~----- 293 (440)
...+...+...+........ ....+.+ +..+ ...+.......++.+++.++.+++.|| +++|+...
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~ 358 (491)
T 4aps_A 281 RVVSYIPLFIAAVLFWAIEEQG-SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFA 358 (491)
T ss_dssp -CTTHHHHHHHHHHHHHHHGGG-GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHH
Confidence 11222232332222222222 2222333 2222 567888888899999999999999998 98876543
Q ss_pred HHHHHHHHHHHHHHHhhh-----ccccchhhcchhHHHHHHHHHHHhhhchhhhHHhHhccCCcchhhHHHHHHhhhhhh
Q psy10432 294 LTVYLATFSITVSTVLTS-----SLFDSRRVLSTNLCFVAFLIYEISVGMYCPVTGYLRGRIIPEKARATITNWLRVPTN 368 (440)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 368 (440)
.+..+..++...+ .... ....... .......+.+++.+...+....+..|..|++.||++.|+.+...+
T Consensus 359 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 359 VGLMFAGLSFLLM-AIPGALYGTSGKVSPL-----WLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp HHHHHHHHHHTTT-HHHHHHCCCCTTCCTH-----HHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHhcCCCCCccHH-----HHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4444444443333 1111 0011111 244555566677777888889999999999999999999999999
Q ss_pred hHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHHHHHhhh
Q psy10432 369 FITCFTLIFIKNEDAEGGKLIAIHSVFVVCTACLLVALLASCVFKR 414 (440)
Q Consensus 369 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (440)
+|..+++.+. +...+ .++...|...+++.+++.++.+...+
T Consensus 433 ~g~~i~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 433 VGSALNAQLV---TLYNA--KSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHHHHHHG---GGGGG--SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHH---HHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999844 44444 25667777777777766666555444
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.98 E-value=5.3e-33 Score=258.68 Aligned_cols=348 Identities=12% Similarity=0.054 Sum_probs=262.1
Q ss_pred HHHHHHHHhhhhhHhhhHhhcCCChhhHHHHHHHHHHHHhhhhccccccccccchhHHHHHHhHHHHHh-hhhcccchhH
Q psy10432 25 FLATFSDWIQGPYVYKVYKDYGYDEKNIALLYIAGFASSMIFGIVVGSIADKFGRKLICISYGIVYTLC-CLTKFSSDFY 103 (440)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~-~~~~~~~~~~ 103 (440)
+..........+..|.+.+++|.|+++.+++.++......+.+++.|+++||+|||+++..+..+.+++ .+..++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 89 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT 89 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHH
Confidence 344445667788888888999999999999888888888888899999999999999999999999998 6788889999
Q ss_pred HHHHHHHHHHHHHhhhccccchhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhHHHHH
Q psy10432 104 ILLYGRLFGGIATSILFSGFESWYVNEHLNYYLFPVEWLNLTFARATFGSGLFAIVSGFTAHFFADILNLGPIAPFAVAI 183 (440)
Q Consensus 104 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~ 183 (440)
.+++.|+++|++.+...+...+++. |+.|+|+|++++++.+...++|..++|.+++.+.+..|| |..+.+.+
T Consensus 90 ~l~~~~~l~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~~~~~~~~ 161 (375)
T 2gfp_A 90 VLIAASAMQGMGTGVGGVMARTLPR------DLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW--RACYLFLL 161 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHH------HHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH--HHHHHHHH
Confidence 9999999999999999887777777 999999999999999999999999999999999998899 88888777
Q ss_pred HHHHHHHHHHHHhccccCCCCCccCCCCccchhhhhhhhccCcchHHHHHHHHHHHhHHHHHHHhhhhhhhc-cC---Cc
Q psy10432 184 PFLLGSTLFIYFCWEEHYDPKTAKSSLLPNSMFSSLKFLFTNPCLLTLGIVQSIYEGIMYTFIFVWTPVLEV-LS---PP 259 (440)
Q Consensus 184 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~ 259 (440)
...++..+...+.+||++++++++ ++.++++++++|+|+++...+...+.......+....++++++ .+ .+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (375)
T 2gfp_A 162 VLCAGVTFSMARWMPETRPVDAPR-----TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMT 236 (375)
T ss_dssp HHHHHHHCCCCCSSCCCSTTTCCC-----CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcccCCCCccc-----ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 766655554555677765543322 1223456778888988888777777777766665544444432 33 67
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHH-HHHHHHHHHHhhhccccchhhcchhHHHHHHHHHHHhhhc
Q psy10432 260 LGLVFSCFMISIMIGSKIYSILILKYFKPETMLTLTVYL-ATFSITVSTVLTSSLFDSRRVLSTNLCFVAFLIYEISVGM 338 (440)
Q Consensus 260 ~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 338 (440)
.+.......++.+++.++.+++.|| .++ ....+... ...+...+ ........ ... .......+.+++.+.
T Consensus 237 ~g~~~~~~~~~~~~~~~~~~~l~~r-~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~----~~~~~~~l~g~~~~~ 307 (375)
T 2gfp_A 237 VSILFILPIPAAFFGAWFAGRPNKR-FST--LMWQSVICCLLAGLLMW-IPDWFGVM-NVW----TLLVPAALFFFGAGM 307 (375)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTTTTH-HHH--HHHHHHHHHHHTSSSSS-HHHHHHHH-HHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHH-HHhhhccc-cHH----HHHHHHHHHHHHHHH
Confidence 7888899999999999999999997 665 22333222 11111110 10000000 111 233445566677788
Q ss_pred hhhhHHhHhccCCcchhhHHHHHHhhhhhhhHHHHHHHHhhccccccCccchhhHHHHHHH
Q psy10432 339 YCPVTGYLRGRIIPEKARATITNWLRVPTNFITCFTLIFIKNEDAEGGKLIAIHSVFVVCT 399 (440)
Q Consensus 339 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (440)
..+.......|..| ++||++.|+.+...+++..++|.+. +.+.+ ..++...+...+
T Consensus 308 ~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~---g~l~~-~~~~~~~~~~~~ 363 (375)
T 2gfp_A 308 LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLS---AMLPQ-TGQGSLGLLMTL 363 (375)
T ss_dssp TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTC---THHHH-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHH---HHHhc-CCcccHHHHHHH
Confidence 88988999999988 8999999999999999999999843 55555 556666666543
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=3.1e-29 Score=241.82 Aligned_cols=376 Identities=11% Similarity=0.024 Sum_probs=235.9
Q ss_pred HhhhhhHhhhHhhcCC--------ChhhHHHH---HHHHHHHHhhhhccccccccccchhHHHHHHhHHHHHh-hhhc--
Q psy10432 32 WIQGPYVYKVYKDYGY--------DEKNIALL---YIAGFASSMIFGIVVGSIADKFGRKLICISYGIVYTLC-CLTK-- 97 (440)
Q Consensus 32 ~~~~~~~~~~~~~~g~--------s~~~~~~~---~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~-~~~~-- 97 (440)
+..+..++.+.++++. +.++.|++ +.++..++. +++|+++||+|||++++++.+++.++ ++++
T Consensus 29 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~---~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~ 105 (491)
T 4gc0_A 29 AVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGG---ALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWP 105 (491)
T ss_dssp HGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHH---HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655532 23344554 444444444 59999999999999999999999988 6655
Q ss_pred ----------------ccchhHHHHHHHHHHHHHHhhhccccchhhhccccccccccchhhhHHHHHHHHHHHHHHHHHH
Q psy10432 98 ----------------FSSDFYILLYGRLFGGIATSILFSGFESWYVNEHLNYYLFPVEWLNLTFARATFGSGLFAIVSG 161 (440)
Q Consensus 98 ----------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 161 (440)
+++|+++++++|+++|++.|...+...+++. |+.|+++|++..+..+.+...|.++++
T Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~------E~~p~~~rg~~~~~~~~~~~~g~~~~~ 179 (491)
T 4gc0_A 106 ELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIA------ELAPAHIRGKLVSFNQFAIIFGQLLVY 179 (491)
T ss_dssp TTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH------TTSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhCCHHhhhhhHHhhhhhhhhhhhhhh
Confidence 4789999999999999999999887777777 999999999999999999999999999
Q ss_pred HHHHHHHhhcc------cCchhhHHHHHHHHHHHHHHHHHhccccCCC----CCccCC--------------CCc---c-
Q psy10432 162 FTAHFFADILN------LGPIAPFAVAIPFLLGSTLFIYFCWEEHYDP----KTAKSS--------------LLP---N- 213 (440)
Q Consensus 162 ~~~~~l~~~~g------w~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~----~~~~~~--------------~~~---~- 213 (440)
.++..+....+ |.||..+.......++ .+...+..||+|+. .++++. ++. +
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 258 (491)
T 4gc0_A 180 CVNYFIARSGDASWLNTDGWRYMFASECIPALL-FLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKH 258 (491)
T ss_dssp HHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH-HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhccccccccccchhhHHHhhhhhhhhhh-hhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHH
Confidence 98887765432 1236666555555443 33445567888641 000000 000 0
Q ss_pred ---chh--hhhhhhccCcchHHHHHHHHHHHhHHHHHHHhhhhhh-hccC---CchhhHHHHHHHHHHHHHHHHHHHHhh
Q psy10432 214 ---SMF--SSLKFLFTNPCLLTLGIVQSIYEGIMYTFIFVWTPVL-EVLS---PPLGLVFSCFMISIMIGSKIYSILILK 284 (440)
Q Consensus 214 ---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~g~~~~~~~~~~~~~~~~~g~l~~r 284 (440)
..+ ......++.++.........+.+.........+.+.+ +..+ ..........++..+++.++.+++.||
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr 338 (491)
T 4gc0_A 259 SLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK 338 (491)
T ss_dssp HHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 0011122333333333333333332222223344444 3332 334455566778888999999999998
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhhccccchhhcchhHHHHHHHHHHHhhhc-hhhhHHhHhccCCcchhhHHHHHHh
Q psy10432 285 YFKPETMLTLTVYLATFSITVSTVLTSSLFDSRRVLSTNLCFVAFLIYEISVGM-YCPVTGYLRGRIIPEKARATITNWL 363 (440)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~p~~~~g~~~g~~ 363 (440)
+|||+.+..+.....++.+.+..........+. .+....++..+.+. ..|..+.+..|.+|++.|+++.|+.
T Consensus 339 -~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~ 411 (491)
T 4gc0_A 339 -FGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIV------ALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIA 411 (491)
T ss_dssp -HCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH------HHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHH
T ss_pred -hcCcchhccchHHHHHHHHHHHHHHhcccchHH------HHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHH
Confidence 999999988888777766555222222221121 22222222222332 4567788999999999999999999
Q ss_pred hhhhhhHHHHHHHHhhcc---ccccCccchhhHHHHHHHHHHHHHHHHHH-Hhhhhhcccccchhhhhhh
Q psy10432 364 RVPTNFITCFTLIFIKNE---DAEGGKLIAIHSVFVVCTACLLVALLASC-VFKRLYLSRKYSCESEKDL 429 (440)
Q Consensus 364 ~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 429 (440)
+...++++.+++..+... ..... ..+....|.+.+++++++.++.+ ++++ .|.++-+|.++
T Consensus 412 ~~~~~~~~~i~~~~~p~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~i~~~~~~PE----Tkg~tLeei~~ 476 (491)
T 4gc0_A 412 VAAQWLANYFVSWTFPMMDKNSWLVA-HFHNGFSYWIYGCMGVLAALFMWKFVPE----TKGKTLEELEA 476 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHCHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHHHCCC----CTTCCHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHheecC----CCCCCHHHHHH
Confidence 999999998887643110 00111 23445667777777777666554 4455 44444444443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.96 E-value=1.1e-28 Score=232.62 Aligned_cols=363 Identities=14% Similarity=0.048 Sum_probs=228.1
Q ss_pred HHHHHHHHhhhhhHhhhH-hhcCCChhhHHHHHHHHHHHHhhhhccccccccccchhHHHHHHhHHHHHh-h---hhccc
Q psy10432 25 FLATFSDWIQGPYVYKVY-KDYGYDEKNIALLYIAGFASSMIFGIVVGSIADKFGRKLICISYGIVYTLC-C---LTKFS 99 (440)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~-~---~~~~~ 99 (440)
+....+.....+++|... +++|.|+.++|++.+.......+.+|++|+++||+||||+++.+..+.++. . ...+.
T Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~ 96 (417)
T 2cfq_A 17 FFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG 96 (417)
T ss_dssp HHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455667776644 568999999999888888888888899999999999999999888776653 1 11222
Q ss_pred chhH-HHHHHHHHHHHHHhhhccccchhhhccccccccccc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCch
Q psy10432 100 SDFY-ILLYGRLFGGIATSILFSGFESWYVNEHLNYYLFPV--EWLNLTFARATFGSGLFAIVSGFTAHFFADILNLGPI 176 (440)
Q Consensus 100 ~~~~-~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~ 176 (440)
+... .++..+.+.|++.+...+...+... ++.++ ++++...+......++|..++|.+++++.+. +| +
T Consensus 97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~~--~ 167 (417)
T 2cfq_A 97 PLLQYNILVGSIVGGIYLGFCFNAGAPAVE------AFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NN--Q 167 (417)
T ss_dssp HHHHTTCCHHHHGGGSSTTHHHHTTHHHHH------HHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-CS--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH------HHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-ch--h
Confidence 2211 1334555555544443333222222 33333 3556677888888999999999999999874 77 7
Q ss_pred hhHHHHHHHHHHHHHHHHHhccccCCCCC-cc--CCCCccchhhhhhhhccCcchHHHHHHHHHHHhHHHHHHHhhhhhh
Q psy10432 177 APFAVAIPFLLGSTLFIYFCWEEHYDPKT-AK--SSLLPNSMFSSLKFLFTNPCLLTLGIVQSIYEGIMYTFIFVWTPVL 253 (440)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (440)
..|++.+...++..+...+..||++++.+ ++ ++++.+...+++++++++|+++...+..+........+.. +.|.+
T Consensus 168 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 246 (417)
T 2cfq_A 168 FVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQ-QFANF 246 (417)
T ss_dssp HHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH-HHHHH
Confidence 77776655543333332223334322111 10 0001111223456778888887765554443333333322 23332
Q ss_pred --hccC------CchhhHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHhhhccccchhhcchhHH
Q psy10432 254 --EVLS------PPLGLVFSCFMISIMIGSKIYSILILKYFKPETMLTLTVYLATFSITVSTVLTSSLFDSRRVLSTNLC 325 (440)
Q Consensus 254 --~~~~------~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (440)
+..+ ...+.......++.+++.++.+++.|| +++|+.+..+..+.++..+.+ .. .. ..+ ..
T Consensus 247 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~-~~--~~-~~~------~~ 315 (417)
T 2cfq_A 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGS-SF--AT-SAL------EV 315 (417)
T ss_dssp HHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHH-TT--CC-SHH------HH
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHH-HH--hc-cHH------HH
Confidence 2121 334667777778888999999999998 999998877776665544333 21 11 111 12
Q ss_pred HHHHHHHHHhhhchhhhHHhHhccCCcchhhHHHHHH-hhhhhhhHHHHHHHHhhccccccCccchhhHHHHHHHHHHHH
Q psy10432 326 FVAFLIYEISVGMYCPVTGYLRGRIIPEKARATITNW-LRVPTNFITCFTLIFIKNEDAEGGKLIAIHSVFVVCTACLLV 404 (440)
Q Consensus 326 ~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~g~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (440)
.....+..++.+...+....+..|..|++.||++.+. .+...++|+.++|.+. |.+.+ ..+++..|.+.+++.++
T Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~---G~l~~-~~g~~~~f~~~~~~~l~ 391 (417)
T 2cfq_A 316 VILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA---GNMYE-SIGFQGAYLVLGLVALG 391 (417)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHH---HTHHH-HSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhH---HHHHH-hcCcHHHHHHHHHHHHH
Confidence 2222233344455556667889999999999999998 4888889999999954 66767 67888888888887777
Q ss_pred HHHHHHHh
Q psy10432 405 ALLASCVF 412 (440)
Q Consensus 405 ~~~~~~~~ 412 (440)
+.+..+..
T Consensus 392 ~~~~~~~~ 399 (417)
T 2cfq_A 392 FTLISVFT 399 (417)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHhh
Confidence 76655443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.95 E-value=1e-26 Score=225.98 Aligned_cols=362 Identities=7% Similarity=0.026 Sum_probs=220.3
Q ss_pred hhhhhHhhh-HhhcC------CChhhHHHHHHHHHHHHhhhhcccccccccc-chhHHHHHHhHHHHHh-hhhcccc-hh
Q psy10432 33 IQGPYVYKV-YKDYG------YDEKNIALLYIAGFASSMIFGIVVGSIADKF-GRKLICISYGIVYTLC-CLTKFSS-DF 102 (440)
Q Consensus 33 ~~~~~~~~~-~~~~g------~s~~~~~~~~~~~~~~~~l~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~-~~~~~~~-~~ 102 (440)
...+.++.. .+++| .++.+.+++.++......+..++.|+++||+ |||+++..+.++.+++ .+..+++ ++
T Consensus 30 ~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 109 (524)
T 2xut_A 30 GMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSV 109 (524)
T ss_dssp HHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccH
Confidence 344555443 36788 9999999988888877777778999999999 9999999999999998 6778888 99
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhhccccccccccchhhhHHHHH---HHHHHHHHHHHHHHHHHHHHhhcccCchhhH
Q psy10432 103 YILLYGRLFGGIATSILFSGFESWYVNEHLNYYLFPVEWLNLTFAR---ATFGSGLFAIVSGFTAHFFADILNLGPIAPF 179 (440)
Q Consensus 103 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~ 179 (440)
+.+++.|++.|++.+...|...+++. |++|+++|+++.+. .+...++|..+||.+++.+.+..|| +..|
T Consensus 110 ~~~~~~~~l~g~~~~~~~~~~~~~~~------~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~--~~~f 181 (524)
T 2xut_A 110 QGFYTGLFLIALGSGGIKPLVSSFMG------DQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGA--AVAF 181 (524)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHH------HTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCH--HHHH
T ss_pred HHHHHHHHHHHHhccccchhHHHHHH------HHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH--HHHH
Confidence 99999999999999999888777777 99999999776655 8999999999999999999998898 8888
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCccCC--CC----------cc---ch-----------------------------
Q psy10432 180 AVAIPFLLGSTLFIYFCWEEHYDPKTAKSS--LL----------PN---SM----------------------------- 215 (440)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~----------~~---~~----------------------------- 215 (440)
.+.+...++..+...+..|+.+++++++++ .. .+ +.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (524)
T 2xut_A 182 GIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGL 261 (524)
T ss_dssp HHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhh
Confidence 877766554444333222221111100000 00 00 00
Q ss_pred ------------hhhhh------------hhccCcchHHHHHHHHHHHhHHHHHHHhhhhhh----hccCC----chhhH
Q psy10432 216 ------------FSSLK------------FLFTNPCLLTLGIVQSIYEGIMYTFIFVWTPVL----EVLSP----PLGLV 263 (440)
Q Consensus 216 ------------~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~g~~ 263 (440)
.++++ ...+.++.+... .........+.....+.+.+ ...+. ..+..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (524)
T 2xut_A 262 CCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRIL-VLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMM 340 (524)
T ss_dssp HHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHH-HHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHH
T ss_pred hhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHH-HHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHH
Confidence 00000 001112222111 11111111111111112222 11121 35555
Q ss_pred HHHHHHHHHHHHHHHHHHH----hhccCC----chhHHHHHHHHHHHHHHHHHhhhc-----cccchhhcchhHHHHHHH
Q psy10432 264 FSCFMISIMIGSKIYSILI----LKYFKP----ETMLTLTVYLATFSITVSTVLTSS-----LFDSRRVLSTNLCFVAFL 330 (440)
Q Consensus 264 ~~~~~~~~~~~~~~~g~l~----~r~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 330 (440)
.....++.+++.++.+++. || .++ ++.+..+..+..++.+.+ ..... ...... .......
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~ 413 (524)
T 2xut_A 341 QALNPLLVMLLIPFNNFVLYPAIER-MGVKLTALRKMGAGIAITGLSWIVV-GTIQLMMDGGSALSIF-----WQILPYA 413 (524)
T ss_dssp HTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTT-TTTTTTTTTTCCCCSH-----HHHHHHH
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcCHH-----HHHHHHH
Confidence 5555556666666665543 43 322 234445555554444333 21110 001111 2444555
Q ss_pred HHHHhhhchhhhHHhHhccCCcchhhHHHHHHhhhhhhhHHHHHHHHhhccccccCcc---------chh-hHHHHHHHH
Q psy10432 331 IYEISVGMYCPVTGYLRGRIIPEKARATITNWLRVPTNFITCFTLIFIKNEDAEGGKL---------IAI-HSVFVVCTA 400 (440)
Q Consensus 331 ~~~~~~g~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~ 400 (440)
+.+++.+...+....+..+..|++.||+++|+.+...++|..++|.+. +.+.+.. .+. ...|.+.++
T Consensus 414 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (524)
T 2xut_A 414 LLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLAN---VSVKSPTVTEQIVQTGMSVTAFQMFFFAG 490 (524)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHH---HHTTSCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHH---HHhcccccccccccccccccccHHHHHHH
Confidence 667777888898999999999999999999999999999999999855 4454411 011 223666666
Q ss_pred HHHHHHHHHHHhh
Q psy10432 401 CLLVALLASCVFK 413 (440)
Q Consensus 401 ~~~~~~~~~~~~~ 413 (440)
+.+++.++.+...
T Consensus 491 ~~~~~~~~~~~~~ 503 (524)
T 2xut_A 491 FAILAAIVFALYA 503 (524)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHHHHH
Confidence 6666655554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.42 E-value=1.6e-12 Score=123.27 Aligned_cols=157 Identities=9% Similarity=-0.009 Sum_probs=123.8
Q ss_pred HHhhhhhHhhhHhh-cCCChhhHHHHHHHHHHHHhhhhcccccccccc--chhHHHHHHhHHHH-Hh-hhhccc--chhH
Q psy10432 31 DWIQGPYVYKVYKD-YGYDEKNIALLYIAGFASSMIFGIVVGSIADKF--GRKLICISYGIVYT-LC-CLTKFS--SDFY 103 (440)
Q Consensus 31 ~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~l~~~~~G~l~Dr~--Grr~~l~~~~~~~~-~~-~~~~~~--~~~~ 103 (440)
......+.|.+.++ +|.++.+.++...+......+..++.|++.||+ |||+.+..+..+.. ++ .+..+. .+.+
T Consensus 268 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (451)
T 1pw4_A 268 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT 347 (451)
T ss_dssp HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 33455566555555 899999999877777776666678999999999 99999888777766 55 445454 3677
Q ss_pred HHHHHHHHHHHHHhhhccccchhhhccccccccccchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccCchhhHHHH
Q psy10432 104 ILLYGRLFGGIATSILFSGFESWYVNEHLNYYLFPVEWLNLTFARATFGSGL-FAIVSGFTAHFFADILNLGPIAPFAVA 182 (440)
Q Consensus 104 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~gw~~~~~~~~~ 182 (440)
.+.+..++.|++.+...+...+++. |..|+++|++++++.+....+ |..++|.+.+.+.+..|| +..|++.
T Consensus 348 ~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~--~~~~~~~ 419 (451)
T 1pw4_A 348 VDMICMIVIGFLIYGPVMLIGLHAL------ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW--DGGFMVM 419 (451)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHH------HTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS--HHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHH------HHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHH
Confidence 7888888999988887676666666 999999999999999999999 999999999999999888 7777777
Q ss_pred HHHHHHHHHHHHH
Q psy10432 183 IPFLLGSTLFIYF 195 (440)
Q Consensus 183 ~~~~~~~~~~~~~ 195 (440)
.+..++..++..+
T Consensus 420 ~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 420 IGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666655554443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.34 E-value=7.9e-12 Score=117.31 Aligned_cols=145 Identities=14% Similarity=0.111 Sum_probs=109.2
Q ss_pred hhhHHHHHHHHHHHHhhhhccccccccccchhHHHHHHhHHHHHh-hhhcccchhHHHHHHHHHHHHHHhhhccccchhh
Q psy10432 49 EKNIALLYIAGFASSMIFGIVVGSIADKFGRKLICISYGIVYTLC-CLTKFSSDFYILLYGRLFGGIATSILFSGFESWY 127 (440)
Q Consensus 49 ~~~~~~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 127 (440)
..+.+....+..+...+..++.|+++||+|||+.+..+..+.+++ .+..+.++.+.+++..++.+++.+...+...+++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554555569999999999999998888888777 5666777888888888888887766655444455
Q ss_pred hccccccccccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCchhhHHHHHHHHHHHHHHHHHhccccC
Q psy10432 128 VNEHLNYYLFPVEWLNLTFAR-ATFGSGLFAIVSGFTAHFFADILNLGPIAPFAVAIPFLLGSTLFIYFCWEEHY 201 (440)
Q Consensus 128 ~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 201 (440)
. |.+|++.|+++.+. .+....+|..++|.++|.+.+..|+ ...|.+.+...++..+..+...||++
T Consensus 338 ~------~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~--~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 T------SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF--QGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp H------HHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHH--HHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred H------HHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 5 99999999999999 4888889999999999999988777 77777766666655555455555543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.26 E-value=8.6e-11 Score=110.96 Aligned_cols=142 Identities=15% Similarity=0.184 Sum_probs=108.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHhhhccccchhhcchhHHHHHHHHHHHhhh
Q psy10432 258 PPLGLVFSCFMISIMIGSKIYSILILKYFKPETMLTLTVYLATFSITVSTVLTSSLFDSRRVLSTNLCFVAFLIYEISVG 337 (440)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 337 (440)
.+.+++.+...++..++.++.|++.|| +|+|+.+..+....+++.+....... ....+ ..++...+.+++.+
T Consensus 61 ~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~-~~~~~------~l~~~~~l~G~~~~ 132 (438)
T 3o7q_A 61 FQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAE-IMNYT------LFLVGLFIIAAGLG 132 (438)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHHHHHHHHHHhccc-cccHH------HHHHHHHHHHhhHH
Confidence 778999999999999999999999998 99999999998888887765522111 11112 35556667777888
Q ss_pred chhhhHHhHhccCCcchhhHHHHHHhhhhhhhHHHHHHHHhhcccccc-Cccch-------------------------h
Q psy10432 338 MYCPVTGYLRGRIIPEKARATITNWLRVPTNFITCFTLIFIKNEDAEG-GKLIA-------------------------I 391 (440)
Q Consensus 338 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-------------------------~ 391 (440)
...+....++.|..|+++|++++++.+...++|..++|.+. +.+. + ..+ +
T Consensus 133 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~---~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 208 (438)
T 3o7q_A 133 CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG---QSLILS-NVPHQSQDVLDKMSPEQLSAYKHSLVLSV 208 (438)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHT---THHHHT-SSCCCCHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH---HHHHhc-ccccccccccccCCcchhhhhhhhhhhhH
Confidence 89999999999999999999999999999999999999843 4444 3 222 7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy10432 392 HSVFVVCTACLLVALLASCV 411 (440)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~ 411 (440)
+..|.+.++..++..+....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 209 QTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78887766665555444433
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.23 E-value=2.8e-10 Score=110.11 Aligned_cols=172 Identities=10% Similarity=0.082 Sum_probs=125.3
Q ss_pred cchHHHHHHHHHHHhHHHHHHHhhhhhh----h------ccCCchhhHHHHHHHHHHHHHHHHHHHHhhcc-CCchhHHH
Q psy10432 226 PCLLTLGIVQSIYEGIMYTFIFVWTPVL----E------VLSPPLGLVFSCFMISIMIGSKIYSILILKYF-KPETMLTL 294 (440)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~-~~~~~~~~ 294 (440)
+.++...+..++.....+......++++ + ....+.+++.+...++..++.++.|++.|| + |+|+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~~~ 90 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTILW 90 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHH
Confidence 4556666666666666655555455544 2 334778999999999999999999999998 9 99999888
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhcchhHHHHHHHHHHHhhhchhhhHHhHhccCCcchhhHHHHHH---hhhhhhhHH
Q psy10432 295 TVYLATFSITVSTVLTSSLFDSRRVLSTNLCFVAFLIYEISVGMYCPVTGYLRGRIIPEKARATITNW---LRVPTNFIT 371 (440)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~g~~~g~---~~~~~~~g~ 371 (440)
+..+..++.+.. .+.. ...+ ..+....+.+++.+...|...+++.|.+|+++|++..+. .+...++|.
T Consensus 91 ~~~~~~~~~~~~-~~~~--~~~~------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~ 161 (524)
T 2xut_A 91 LSLIYCVGHAFL-AIFE--HSVQ------GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS 161 (524)
T ss_dssp HHHHHHHHHHHH-HHTS--SCHH------HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhc--ccHH------HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence 888777766555 2211 0111 345555566777888899999999999999999766555 888999999
Q ss_pred HHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHHHHH
Q psy10432 372 CFTLIFIKNEDAEGGKLIAIHSVFVVCTACLLVALLASCV 411 (440)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (440)
.++|. .+ +.+.+ ..+++..|.+.+++.+++.+....
T Consensus 162 ~~g~~--~~-~~l~~-~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 162 FFASL--SM-PLLLK-NFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHH--TS-THHHH-TSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHH--HH-HHHhc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 34 66666 678899999888776666555443
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.22 E-value=1.5e-10 Score=111.12 Aligned_cols=173 Identities=14% Similarity=0.137 Sum_probs=127.0
Q ss_pred chHHHHHHHHHHHhHHHHHHHhhhhhh-hc-----cC---CchhhHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHH
Q psy10432 227 CLLTLGIVQSIYEGIMYTFIFVWTPVL-EV-----LS---PPLGLVFSCFMISIMIGSKIYSILILKYFKPETMLTLTVY 297 (440)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~---~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~ 297 (440)
.++......++.....+......++++ +. .+ .+.++..+...++..++.++.|+++||++|||+.+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 344555555555555555545455555 32 34 6788999999999999999999999941599999999888
Q ss_pred HHHHHHHHHHHhhhccccchhhcchhHHHHHHHHHHHhhhchhhhHHhHhccCCcchh--hHHHHHHhhhhhhhHHHHHH
Q psy10432 298 LATFSITVSTVLTSSLFDSRRVLSTNLCFVAFLIYEISVGMYCPVTGYLRGRIIPEKA--RATITNWLRVPTNFITCFTL 375 (440)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~--~g~~~g~~~~~~~~g~~~~~ 375 (440)
+..++.+.. ... +..+ ..+....+.+++.+...+...+++.|.+|+++ |+.+++..+...++|..++|
T Consensus 94 ~~~~~~~~~-~~~---~~~~------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 163 (491)
T 4aps_A 94 LIMLGHIVL-ALP---FGAS------ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAP 163 (491)
T ss_dssp HHHHHHHHH-HSC---CSTT------HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHh---hhHH------HHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHH
Confidence 887776555 221 1111 34555556677788889999999999999888 77888889999999999999
Q ss_pred HHhhccccccCccchhhHHHHHHHHHHHHHHHHHHHhh
Q psy10432 376 IFIKNEDAEGGKLIAIHSVFVVCTACLLVALLASCVFK 413 (440)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (440)
.+. +.+.+ ..+++..|.+.++..+++.+.....+
T Consensus 164 ~~~---~~l~~-~~g~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 164 LIV---GAAQE-AAGYHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHH---HHHHH-HSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 844 66666 67899999998877777666555443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.17 E-value=9.6e-11 Score=108.24 Aligned_cols=135 Identities=8% Similarity=0.069 Sum_probs=108.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHhhhccccchhhcchhHHHHHHHHHHHhhh
Q psy10432 258 PPLGLVFSCFMISIMIGSKIYSILILKYFKPETMLTLTVYLATFSITVSTVLTSSLFDSRRVLSTNLCFVAFLIYEISVG 337 (440)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 337 (440)
.+.++..+...++..++.++.|++.|| +|||+.+..+.....++.+.. .... ... ..+....+.+++.+
T Consensus 35 ~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~~~----~~~-----~l~~~~~l~g~~~~ 103 (375)
T 2gfp_A 35 GAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVA-VTTS----SLT-----VLIAASAMQGMGTG 103 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHHH-HHHH----HHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHH-HHhc----cHH-----HHHHHHHHHHHHHH
Confidence 678899999999999999999999998 999999998888887777655 2211 111 34445556667778
Q ss_pred chhhhHHhHhccCCcchhhHHHHHHhhhhhhhHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHH
Q psy10432 338 MYCPVTGYLRGRIIPEKARATITNWLRVPTNFITCFTLIFIKNEDAEGGKLIAIHSVFVVCTACLLVALL 407 (440)
Q Consensus 338 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (440)
...+....++.|..|+++|+++++..+....+|..++|.+. +.+.+ ..+++..|.+.++..++..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 104 VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIG---GLLDT-MWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHH---HHSSC-HHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHH-hccHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999943 66767 77889999888777666554
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.04 E-value=3e-09 Score=101.98 Aligned_cols=162 Identities=17% Similarity=0.042 Sum_probs=104.2
Q ss_pred hhhhHhhhHhhcCCChhhHHHHHHHHHHHHhhhhccccccccccchhHHHHHHhHHHHHh-hhhcc---c-chhHHHHHH
Q psy10432 34 QGPYVYKVYKDYGYDEKNIALLYIAGFASSMIFGIVVGSIADKFGRKLICISYGIVYTLC-CLTKF---S-SDFYILLYG 108 (440)
Q Consensus 34 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~-~~~~~---~-~~~~~l~~~ 108 (440)
...+.+.+.++.+.+..+.............+..++.+.+.||+|||+.++.+.....++ ...+. . .+.+..++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 375 (491)
T 4gc0_A 296 VLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS 375 (491)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 334455566777777666555444444444444569999999999999998888777766 32221 1 111222222
Q ss_pred HHHHHHHH-hhhccccchhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh------cccCchhhHHH
Q psy10432 109 RLFGGIAT-SILFSGFESWYVNEHLNYYLFPVEWLNLTFARATFGSGLFAIVSGFTAHFFADI------LNLGPIAPFAV 181 (440)
Q Consensus 109 r~l~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~------~gw~~~~~~~~ 181 (440)
-++...+. ....|....+.. |.+|.+.|+++.|+......++..+++.+...+.+. .++ ...|++
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~------E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~--~~~~~i 447 (491)
T 4gc0_A 376 MLFYVAAFAMSWGPVCWVLLS------EIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHN--GFSYWI 447 (491)
T ss_dssp HHHHHHHHHTTTTHHHHHHHH------HSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHH------HhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHH
Confidence 22222221 122233334455 999999999999999999999999988877665432 233 556777
Q ss_pred HHHHHHHHHHHHHHhccccCCC
Q psy10432 182 AIPFLLGSTLFIYFCWEEHYDP 203 (440)
Q Consensus 182 ~~~~~~~~~~~~~~~~~e~~~~ 203 (440)
.+.+.++..++.++++||++.+
T Consensus 448 ~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 448 YGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHHHheecCCCCC
Confidence 7777777777788899998754
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=43.37 E-value=2.9 Score=19.67 Aligned_cols=13 Identities=54% Similarity=0.943 Sum_probs=10.2
Q ss_pred ccccccccchhHH
Q psy10432 70 VGSIADKFGRKLI 82 (440)
Q Consensus 70 ~G~l~Dr~Grr~~ 82 (440)
.|.+..+||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5778889998865
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=29.88 E-value=1.2e+02 Score=19.73 Aligned_cols=16 Identities=0% Similarity=-0.268 Sum_probs=9.0
Q ss_pred HHHHHHhccccCCCCC
Q psy10432 190 TLFIYFCWEEHYDPKT 205 (440)
Q Consensus 190 ~~~~~~~~~e~~~~~~ 205 (440)
.-.+-..+||+.++..
T Consensus 47 l~~iG~~LPE~Sr~aP 62 (77)
T 2dw3_A 47 FRVVGRMLPIQENQAP 62 (77)
T ss_dssp HHHHHHCTTTTCSSCS
T ss_pred HHHHHHhCchhcccCC
Confidence 3344456788765443
Done!