RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10432
(440 letters)
>gnl|CDD|114359 pfam05631, DUF791, Protein of unknown function (DUF791). This
family consists of several eukaryotic proteins of
unknown function.
Length = 354
Score = 249 bits (638), Expect = 2e-79
Identities = 129/325 (39%), Positives = 197/325 (60%), Gaps = 12/325 (3%)
Query: 9 TNMEFKRLQVRYFIPFFLATFSDWIQGPYVYKVYKDYGYDEKNIALLYIAGFASSMIFGI 68
T+ +F + Y + + + DW+QGPYVY +Y YG+ + +I +L+IAGF SSM+FG
Sbjct: 28 TDPKFNSFKNNYLLVYSMMMAGDWLQGPYVYYLYSSYGFSKGDIGILFIAGFGSSMLFGT 87
Query: 69 VVGSIADKFGRKLICISYGIVYTLCCLTKFSSDFYILLYGRLFGGIATSILFSGFESWYV 128
+VGS+ADK GRK C++Y I+Y L C+TK S ++ +L+ GR GGIATS+LFS FESW +
Sbjct: 88 IVGSLADKQGRKRACLTYCILYILSCITKHSPNYKVLMIGRFLGGIATSLLFSAFESWLI 147
Query: 129 NEHLNYYLFPVEWLNLTFARATF-GSGLFAIVSGFTAHFFADILNLGPIAPFAVAIPFLL 187
EH N F +WL+ TF++A F G+GL AI+SG A+ AD GP+APF A FL
Sbjct: 148 AEH-NKRGFSDQWLSTTFSKAAFLGNGLVAIISGLFANLLADRFGFGPVAPFDAAACFLA 206
Query: 188 GSTLFIYFCWEEHYDPKTAKSSLLPNSMFSSLKFLFTNPCLLTLGIVQSIYEGIMYTFIF 247
I W E+Y + K L + + + ++P + LG+VQS++EG MYTF+F
Sbjct: 207 IGMAIILNTWSENYGDPSDKKDLK-EQFKVAAQAIASDPNVFCLGLVQSLFEGSMYTFVF 265
Query: 248 VWTPVLEVLSP-----PLGLVFSCFMISIMIGSKIYSILILKYFKPETMLTLTVYLATFS 302
+WTP LSP P G +F+ FM++ M+GS + + L+ ++ + E+ + + L+
Sbjct: 266 LWTP---ALSPNDEEIPHGFIFATFMLASMLGSSVAARLLQRHLRVESYMQIVFLLSAVC 322
Query: 303 ITVSTVLTSSLFDSRRVLSTNLCFV 327
+++ ++TS L +V L V
Sbjct: 323 LSLP-IVTSVLVTPSKVKDDGLSLV 346
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 60.5 bits (147), Expect = 4e-10
Identities = 65/346 (18%), Positives = 125/346 (36%), Gaps = 22/346 (6%)
Query: 21 FIPFFLATFSDWIQGP-YVYKVYKDYGYDEKNIALLYIAGFASSMIFGIVVGSIADKFG- 78
F+ FLA + GP + +D G I LL A + + G ++D+FG
Sbjct: 2 FLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGR 61
Query: 79 RKLICISYGIVYTLCCLTKFSSDFYILLYGRLFGGIATSILFSGFESWYVNEHLNYYLFP 138
R+++ I + L F+S ++LL R+ G+ LF + + FP
Sbjct: 62 RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIAD------WFP 115
Query: 139 VEWLNLTFARATFGSGLFAIVSGFTAHFFADILNLGPIAPFAVAIPFLLGSTLFIYFCW- 197
E + G GL A + A + G A F + L + +
Sbjct: 116 PEERGRALGLLSAGFGLGAALGPLLGGLLASL--FGWRAAFLILAILALLAAVLAALLLP 173
Query: 198 -EEHYDPKTAKSSLLPNSMFSSLKFLFTNP--CLLTLGIVQSIYEGIMYTFIFVWTPVLE 254
+ + P + + K L +P LL ++ + T++ ++ VL
Sbjct: 174 RPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLG 233
Query: 255 VLSPPLGLVFSCFMISIMIGSKIYSILILKYFKPETMLTLTVYLATFSITVSTVLTSSLF 314
+ + GL+ + IG + L + + +L + L ++ ++ + +
Sbjct: 234 LSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTE-- 291
Query: 315 DSRRVLSTNLCFVAFLIYEISVGMYCPVTGYLRGRIIPEKARATIT 360
S+ VA L+ G+ P L + P++ R T +
Sbjct: 292 ------SSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTAS 331
Score = 37.0 bits (86), Expect = 0.016
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 4/115 (3%)
Query: 13 FKRLQVRYFIPFFLATFSDWIQGPYVYKVYKDYGYDEKNIALLYIAGFASSMIFGIVVGS 72
+ + + L F+ + Y+ + G LL I +++G
Sbjct: 200 LRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGR 259
Query: 73 IADKFGRK----LICISYGIVYTLCCLTKFSSDFYILLYGRLFGGIATSILFSGF 123
++D+ GR+ L + + L + LL L G ++F
Sbjct: 260 LSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPAL 314
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 51.6 bits (124), Expect = 4e-07
Identities = 60/323 (18%), Positives = 122/323 (37%), Gaps = 41/323 (12%)
Query: 53 ALLYIAGFASSMIFGIVVGSIADKFGRKLICISYGIV--YTLCCLTKFSSDFYI---LLY 107
+L +AG ++ + G++AD++ RK + I ++ + L + + +Y
Sbjct: 37 SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVY 96
Query: 108 GRLF-GGIATSILFSGFESWYVNEHLNYYLFPVEWLNLTFARATFGSG--LFAIVSGFTA 164
IA + +++ + L P E LT A + + LF IV
Sbjct: 97 VLAGILAIAQAFFTPAYQAMLPD------LVPEE--QLTQANSLSQAVRSLFYIVGPGIG 148
Query: 165 HFFADILNLGPI--APFAVAIPFLLGSTLFIYFC---WEEHYDPKTAKSSLLPNSMFSSL 219
+ I A + A+ F + + L I + + +++L +
Sbjct: 149 GL---MYATLGIKWAIWVDAVGFAISA-LLIVSVRIPELAASEIQALSNAVL-RDTREGI 203
Query: 220 KFLFTNPCLLTLGIVQSIY-----EGIMYTFIFVWTPVLEVLSPPLGLVFSCFMISIMIG 274
KF+ NP L TL ++ ++ I+ F +V + L S G V + F + ++G
Sbjct: 204 KFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLG 263
Query: 275 SKIYSILILKYFKPETMLTLTVYLATFSITVSTVLTSSLFDSRRVLSTNLCFVAFLIYEI 334
+ + L+ +YFK ++T +++ +I V + + L V + +
Sbjct: 264 ALLLG-LLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFP---------LFLVLWFAIGV 313
Query: 335 SVGMYCPVTGYLRGRIIPEKARA 357
G G L R +P +
Sbjct: 314 GYGPINVPQGTLLQRRVPAELLG 336
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 45.8 bits (109), Expect = 2e-05
Identities = 52/292 (17%), Positives = 104/292 (35%), Gaps = 33/292 (11%)
Query: 24 FFLATFSDWIQGPYVYKVYKDYGYDEKNIALLYIAGFASSMIFGIVVGSIADKFGRK-LI 82
FFL+ + P + + +D G L+ A + ++ G ++D+FGR+ ++
Sbjct: 8 FFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVL 67
Query: 83 CISYGIVYTLCCLTKFSSDFYILLYGRLFGGIATSILFSGFESWYVNEHLNYYLFPVEWL 142
+ + L F+S ++LL GR G+ L+ + FP +
Sbjct: 68 LLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE------WFPPKER 121
Query: 143 NLTFARATFGSGLFAIVSGFTAHFFADILNLGPIAPFAVAIPFLLGSTLFIYFCWEEHYD 202
+ G GL A++ A+ LG F + L L + F
Sbjct: 122 GRALGLFSAGFGLGALLGPLLGGLLAES--LGWRWLFLILAILGLLLALLLLFL------ 173
Query: 203 PKTAKSSLLPNSMFSSLKFLFTNPCLLTLGIVQSIYEGIMYTFIFVWTPVLEVLSPPLGL 262
L+ L L ++ Y G++ VL + + GL
Sbjct: 174 ----------------LRLLLL--LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGL 215
Query: 263 VFSCFMISIMIGSKIYSILILKYFKPETMLTLTVYLATFSITVSTVLTSSLF 314
+ S F + ++G+ + +L + + +L + + LA + + + S
Sbjct: 216 LLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 39.1 bits (91), Expect = 0.004
Identities = 37/183 (20%), Positives = 57/183 (31%), Gaps = 38/183 (20%)
Query: 11 MEFKRL---QVRYFIPFFLATFSDWIQGPYVYKVYKD----YGYDEKNIALLYIAGFASS 63
++ L Q F +L D V V + +G + A L A S
Sbjct: 1 PWYRHLTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISR 60
Query: 64 MIFGIVVGSIADKFGRKL---ICISYGIVYTLCCLTKFSSDFYILLYGRLFGGIA----- 115
++ G D++GR+L I TL C F+ + + RL GI
Sbjct: 61 WFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLAC--GFAPGYITMFIARLVIGIGMGGEY 118
Query: 116 -------------------TSILFSGFESWYVNEHLNYYLFPVEWLNLTFARATFGSGLF 156
+ +L SG+ V Y L V + RA F +
Sbjct: 119 GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLV-VPVWGDGW-RALFFISIL 176
Query: 157 AIV 159
I+
Sbjct: 177 PII 179
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 36.6 bits (85), Expect = 0.022
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 43 KDYGYDEKNIALLYIAGFASSMIFGIVVGSIADKFGRKLICISYGIVYTLC-CLTKFSSD 101
++G D + L+ AG + G +AD+ GR+ + + +++++ L +++
Sbjct: 45 AEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATN 104
Query: 102 FYILLYGRLFGGI 114
LL R G+
Sbjct: 105 VTQLLILRFLAGL 117
Score = 34.6 bits (80), Expect = 0.098
Identities = 30/130 (23%), Positives = 45/130 (34%), Gaps = 21/130 (16%)
Query: 241 IMYTFIFVWTPVLEV-------LSPPLGLVFSCFMISIMIGSKIYSILILKYFKPETMLT 293
+ F+ W P L V L+ G +F+ +IGS I+ L + P
Sbjct: 264 VGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGG---VIGSIIFGWLADR-LGPRVTAL 319
Query: 294 LTVYLATFSITVSTVLTSSLFDSRRVLSTNLCFVAFLIYEISVGMYCPVTGYLRGRIIPE 353
L + A F++ V + L S +L F + G+Y L P
Sbjct: 320 LLLLGAVFAVLVGSTLFSP-----TLLLLLGAIAGFFVNGGQSGLYA-----LMALFYPT 369
Query: 354 KARATITNWL 363
RAT W
Sbjct: 370 AIRATGVGWA 379
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 36.5 bits (85), Expect = 0.022
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Query: 55 LYIAGFASSMIFGIVVGSIADKFGRKLICISYGIVYTL----CCLTKFSSDFYILLYGRL 110
+Y+AG A++M+F G IAD+ GRK + I ++ + C L + SS F GR
Sbjct: 46 VYLAGMAAAMLFA---GKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLA---GRF 99
Query: 111 FGGIA 115
GI
Sbjct: 100 LQGIG 104
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 34.6 bits (80), Expect = 0.037
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 55 LYIAGFA-SSMIFGIVVGSIADKFGRKLICISYGIVYTLC-CLTKFSSDFYILLYGRLFG 112
L +AG+A +I+ + G + D+FGRK + + ++ L + SS+ +L+ R
Sbjct: 2 LLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQ 61
Query: 113 GIATSILFS 121
G +
Sbjct: 62 GFGAAFALV 70
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 34.2 bits (79), Expect = 0.15
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 55 LYIAGFASSMIFGIVVGSI-----ADKFGRK---LICISYGIVYTLCCLTKFSSDFYILL 106
+ S G ++GS+ D+FGRK LI ++ L FY+L+
Sbjct: 46 VLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLI 105
Query: 107 YGRLFGGIATSILFSGFESWYVNE 130
GR+ G+ S Y++E
Sbjct: 106 VGRVIVGLGVGG-ISVLVPMYISE 128
>gnl|CDD|183487 PRK12382, PRK12382, putative transporter; Provisional.
Length = 392
Score = 32.7 bits (75), Expect = 0.33
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 41 VYKDYGYDEKNIALLYIAGFASSMIFGIVVGSIADKFGRK-------LICISYGIVYTLC 93
V+ D G+ + + F ++++ G +AD++G K L C G+ Y L
Sbjct: 42 VHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLA 101
Query: 94 CLTKFSS--DFYILLYGRLFGGIATSILFSGFESW 126
+ S+ F +L+ GRL G S L +G +W
Sbjct: 102 AILPVSAPFKFALLVVGRLILGFGESQLLTGALTW 136
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 33.0 bits (75), Expect = 0.34
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 6/140 (4%)
Query: 38 VYKVYKDYGYDEKNIALLYIAGFASSMIFGIVVGSIADKFGRKLICISYGIVYTL-CCLT 96
+Y + D G + A L A F G + G +ADKFGRK + + + Y++ L+
Sbjct: 41 MYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLS 100
Query: 97 KFSSDFYILLYGRLFGGIATSILFS-----GFESWYVNEHLNYYLFPVEWLNLTFARATF 151
+S +L R G+ + ++ ESW + F V + A +
Sbjct: 101 GLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAY 160
Query: 152 GSGLFAIVSGFTAHFFADIL 171
FA G+ A FF +L
Sbjct: 161 FMPSFAEAYGWRAAFFVGLL 180
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 32.3 bits (74), Expect = 0.48
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 60 FASSMIFGIVVGSIADKFGRKLIC-ISYGIVYTLCCLTKFSSDFYILLYGRLFGGIATS 117
F ++ V G ++D+FGRK + +S + LT FS ++ + L RL G+
Sbjct: 137 FVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIG 195
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 31.5 bits (72), Expect = 0.80
Identities = 35/142 (24%), Positives = 51/142 (35%), Gaps = 21/142 (14%)
Query: 63 SMIFGIVVGSIADKFGRK----LICISYGIVYTLCCLTKFSSDFYILLYGRLFGGIATSI 118
I + G ++D+FGRK +I + + I L L F+ +L+ GR+ GI I
Sbjct: 84 GFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGI 143
Query: 119 LFSGFESWYVNE----HLNYYLFPVEWLNLTFARATFGSGLFAIVSGFTAHFFADILNLG 174
S Y++E L L + L +TF L A G LG
Sbjct: 144 -ASALVPMYLSEIAPKALRGALTSLYQLAITFG------ILVAYGFGSGKVS--LNNTLG 194
Query: 175 PIAPFAV----AIPFLLGSTLF 192
P + A LG
Sbjct: 195 WRIPLGLQLIPAGLLFLGLFFL 216
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 31.2 bits (71), Expect = 1.1
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 53 ALLYIAGFASSMIFGIVVGSIADKFGRKLICISYGIVY---TLCCLTKFSSDFYILLYGR 109
A L A F S G+++G++ D++GR+L + +++ TL C F+ ++ L R
Sbjct: 58 ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLAC--GFAPGYWTLFIAR 115
Query: 110 LFGGIA 115
L G+
Sbjct: 116 LVIGMG 121
>gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM;
Provisional.
Length = 413
Score = 30.9 bits (70), Expect = 1.4
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 16/98 (16%)
Query: 30 SDWIQGPYVYKVYKDYGYDEKNIAL------LYIAGFASSMIFGIVVGSIADKFGRKLIC 83
+D IQ P + V +D+ D ++L LY+AG M ++G ++D+ GR+ +
Sbjct: 32 TDLIQ-PGIINVVRDFNAD---VSLAPASVSLYLAG---GMALQWLLGPLSDRIGRRPVL 84
Query: 84 ISYGIVYTLCCL-TKFSSDFYILLYGRLFGGIATSILF 120
I+ +++TL C T F++ L R G TSI F
Sbjct: 85 ITGALIFTLACAATLFTTSMTQFLIARFIQG--TSICF 120
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 30.7 bits (69), Expect = 2.0
Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 16/139 (11%)
Query: 15 RLQVRYFIPFFLATFSDWIQ----GPYVYKVYKDYGYDEKNIALLYIAGFASSMIFGIVV 70
R Q F LA +D ++ G + KD + +L + + M+
Sbjct: 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFW 222
Query: 71 GSIADKFGRK---LICISYGIVYTLCCLTKFSSDFYILLYGRLFGGI----ATSILFSGF 123
G +ADK GRK LIC+S + + F + L+ RL G A I+FS F
Sbjct: 223 GGLADKLGRKQCLLICLSVNGFFAF--FSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYF 280
Query: 124 ESWYVNEHLNYYLFPVEWL 142
+ E +L WL
Sbjct: 281 AEFLAQEKRGEHL---SWL 296
>gnl|CDD|235348 PRK05122, PRK05122, major facilitator superfamily transporter;
Provisional.
Length = 399
Score = 29.9 bits (68), Expect = 2.6
Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 13/84 (15%)
Query: 52 IALLYIAGFASSMIFGIVVGSIADKFGRK-------LICISYGIVYTLCCLTKFSS--DF 102
I+L Y+A S G AD G K C G++Y L L
Sbjct: 57 ISLQYLATLLSR----PHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSL 112
Query: 103 YILLYGRLFGGIATSILFSGFESW 126
+LL GRL GI S+ +G W
Sbjct: 113 LLLLLGRLLLGIGESLAGTGSILW 136
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 29.5 bits (67), Expect = 3.3
Identities = 31/202 (15%), Positives = 64/202 (31%), Gaps = 22/202 (10%)
Query: 4 ERGEKTNMEFKRLQVRYFIPFFLATFSDWIQGPYVY--KVY------KDYGYDEKNIALL 55
E+ +K ++ PF L Y Y + G + L+
Sbjct: 201 EKHKKKRGPIAETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLV 260
Query: 56 YIAGFASSMIFGIVVGSIADKFGRKLICISYGIVYTLCCLTKF-----SSDFYILLYGRL 110
+ I + G+++D+ GR+ + I + ++ L + S F + + L
Sbjct: 261 LMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVL 320
Query: 111 FGGIATSILFSGFESWYVNEHLNYYLFPVEWLNLTFARATFGSGLFAIVSGFTAHFFADI 170
+ + S+ LFP E + + A+ L + G A + A
Sbjct: 321 GMALIGGMYTGPMGSFLPE------LFPTE---VRYTGASLAYNLAGAIFGGFAPYIAAA 371
Query: 171 LNLGPIAPFAVAIPFLLGSTLF 192
L +A+ + +
Sbjct: 372 LVAMTGDWYAIGYYLAALALIG 393
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 29.5 bits (67), Expect = 3.8
Identities = 28/176 (15%), Positives = 57/176 (32%), Gaps = 15/176 (8%)
Query: 138 PVEWLNLTFARATFGSGLFAIVSGFTAHFFADILNLGPIAPF-AVAIPFLLGSTLFIYFC 196
P E +LT R F S +V+ + A+ + + + FC
Sbjct: 144 PQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFC 203
Query: 197 W---EEHYDPKTAKSSLLPNSMFSSLKFLFTNPCLLTLGIV-------QSIYEGIMYTFI 246
+ +E + + + S +F N LL L ++ +I IM ++
Sbjct: 204 FFNVKERVVETQPTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYV 263
Query: 247 FVWTPVLEVLSPPLGLVFSCFMISIMIGSKIYSILILKYFKPETMLTLTVYLATFS 302
E+ + L L ++ I ++K F + + + + L
Sbjct: 264 TYVLGDPELFAYLLLLASGA----GLLIGLILWPRLVKKFGKKKLFLIGLLLLAVG 315
>gnl|CDD|217547 pfam03419, Peptidase_U4, Sporulation factor SpoIIGA.
Length = 291
Score = 29.1 bits (66), Expect = 3.9
Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 8/127 (6%)
Query: 240 GIMYTFIFVWTPVLEVL-SPPLGLVFSCFMISIMIGSK--IYSILILKYFKPETMLTLTV 296
G +Y + P L + P L+FS M+ I G K + + L F T L
Sbjct: 43 GSLYVLLLF-IPFLPIFFHPLFKLLFSVLMVLIAFGPKRFRFFLKTLLIFYFVTFLFGGG 101
Query: 297 YLATFSITVSTVLTSSLFDSRRVLSTNLCFVAFLIYEISVGMYCPVTGYLRGRIIPEKAR 356
A T + L + + + ++Y S + Y++ R I +
Sbjct: 102 LFALHYFTGTGSLVQNGIFGDPISWKFVLIGFPILYIFSKRRWE----YIKRRKIQYELI 157
Query: 357 ATITNWL 363
+ +
Sbjct: 158 VEVEIVI 164
>gnl|CDD|215121 PLN02189, PLN02189, cellulose synthase.
Length = 1040
Score = 29.6 bits (66), Expect = 4.5
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 51/143 (35%)
Query: 45 YGYDEKNIALLYIAGFASSMIFGIVVGSIADKFGRKLICISYGIVYTLCCLT-------- 96
YGY N+ L + ++ I+ L ++Y + +C LT
Sbjct: 799 YGYKGGNLKWLERFAYVNTTIYPFT----------SLPLLAYCTLPAICLLTGKFIMPPI 848
Query: 97 -KFSSDFYILLYGRLFGGIATSIL---FSG--FESWYVNEHLNYYLFPVEWLNLTFARAT 150
F+S F+I L+ +F AT IL +SG E W+ NE
Sbjct: 849 STFASLFFIALFMSIF---ATGILELRWSGVSIEEWWRNEQ------------------- 886
Query: 151 FGSGLFAIVSGFTAHFFADILNL 173
F ++ G +AH FA + L
Sbjct: 887 -----FWVIGGVSAHLFAVVQGL 904
>gnl|CDD|217724 pfam03780, Asp23, Asp23 family. The alkaline shock protein Asp23
was identified as an alkaline shock protein that was
expressed in a sigmaB-dependent manner in
Staphylococcus aureus.
Length = 108
Score = 27.5 bits (62), Expect = 6.0
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 57 IAGFASSMIFGIV------VGSIADKFGRK 80
IAG A+ + G+V + ++ GRK
Sbjct: 15 IAGIAAREVDGVVGMAGGLKDGLTERLGRK 44
>gnl|CDD|182309 PRK10213, nepI, ribonucleoside transporter; Reviewed.
Length = 394
Score = 28.7 bits (64), Expect = 6.0
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 56 YIAGFASSMIFGIVVGSIADKFGRKLICISYGIVYTLCC-LTKFSSDFYILLYGRLFGGI 114
++A FAS I + R+ + I + ++ TL C L F++ F +LL GR G+
Sbjct: 66 FVAMFASLFITQTI-----QATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGL 120
Query: 115 ATSILFSGFESWYVNEHLNYYLFP 138
A GF W ++ L L P
Sbjct: 121 A----LGGF--WAMSASLTMRLVP 138
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 28.7 bits (65), Expect = 6.3
Identities = 34/202 (16%), Positives = 74/202 (36%), Gaps = 21/202 (10%)
Query: 151 FGSGLFAIVSGFTAHFFADILNLGPIAP--FAVAIPFLLGSTLFIYFCW---EEHYDPKT 205
G+ + ++ A +L G A F A+ + + + C+ +E
Sbjct: 144 IGATIGGLLVAVIAPPLVALLGGGNGAKGYFLAALIIAILAVVGFLICFAGTKERVSVPP 203
Query: 206 AKSSLLPNSMFSSLKFLFTNPCLLTLGIVQSIYEGIMYT----FIFVWTPVLEVLSPPLG 261
+ S+ K LF N LL L ++ + M ++ +T VL +
Sbjct: 204 EQKE--KVSLRDMFKALFKNRPLLILLLLYLLNALAMAVRNGLLLYYFTYVLG-NAGLFS 260
Query: 262 LVFSCFMISIMIGSKIYSILILKYFKPETMLTLTVYLATFSITVSTVLTSSLFDSRRVLS 321
++ I+ ++G+ ++ L ++ K T L + A + + + SL+
Sbjct: 261 VLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLW------- 313
Query: 322 TNLCFVAFLIYEISVGMYCPVT 343
L V ++ I +G+ +
Sbjct: 314 --LFLVLVVLAGIGLGLATLLP 333
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute
carrier 6 subfamily; solute-binding domain. SLC6
proteins (also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter.
Length = 480
Score = 28.6 bits (65), Expect = 6.9
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 21/96 (21%)
Query: 55 LYIAGFASSM-IFGIVVGSIADKFG--RKLICISYGIVYTLCCLTKFSS---------DF 102
L AG S + + +V+ ++ DKFG RK +V L L + D
Sbjct: 323 LVFAGLTSLISLVEVVISALQDKFGLSRKKAVTIVCLVGFLVSLLFATGAGLYLLDIVDH 382
Query: 103 YILLYGRLFGGIATSILFSGFESWYVN-----EHLN 133
+I YG + G+ I+ W EHLN
Sbjct: 383 FINNYGIVLVGLVEVIVV----GWVFGAEKLREHLN 414
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 28.7 bits (65), Expect = 7.1
Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 57 IAGFA-SSMIFGIVVGSIADKFGRKLICISYGIVYTLCCL-TKFSSDFYILLYGRLFGGI 114
I +A + ++ + + R+ + + ++ + L + + F +LL R G+
Sbjct: 54 ITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGL 113
Query: 115 ATSILFS 121
A + +S
Sbjct: 114 AHGVFWS 120
>gnl|CDD|215943 pfam00487, FA_desaturase, Fatty acid desaturase.
Length = 251
Score = 28.0 bits (62), Expect = 8.7
Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 16/143 (11%)
Query: 95 LTKFSSDFYILLYGRLFGGIATSILFSGFESWYVNEHLNYYLFPVEWLNLTFARATFGSG 154
L +++ +L GRL +L L +LF L R F
Sbjct: 82 LLRYALRRRLLGLGRLLYRFLLGVLL----------GLLVFLFRFRRRRLRKRRRRFRIR 131
Query: 155 LFAIVSGFTAHFFADILNLGPIAPFAVAIPFLLGSTLFIYFCWEEHY----DPKTAKSSL 210
L +++ A G A +P LL TL + + EHY +P+ A +
Sbjct: 132 LLLLLALLLALALLLAGLGGWGALLLFLLPLLLALTLLLLVNYLEHYGLDTEPERAARTW 191
Query: 211 LPNSMFSSLKFLFTNPCLLTLGI 233
+ ++ N LT +
Sbjct: 192 YERQLVTTSNSWVLN--WLTGNL 212
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 28.4 bits (64), Expect = 9.5
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 17/81 (20%)
Query: 43 KDYGYDEKNIALLYIAGFASSMIFGIVVGS-----IADKFGRKLICIS----YGIVYTLC 93
+++G D + + AG I G++ G+ +AD+ GRK I I +G+
Sbjct: 43 QEFGLDVAQMGWAFSAG-----ILGLLPGALLGGRLADRIGRKRILIVSVALFGL---FS 94
Query: 94 CLTKFSSDFYILLYGRLFGGI 114
T + DF LL RL G+
Sbjct: 95 LATAQAWDFPSLLVARLLTGV 115
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.143 0.446
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,795,540
Number of extensions: 2299895
Number of successful extensions: 3385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3306
Number of HSP's successfully gapped: 233
Length of query: 440
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 340
Effective length of database: 6,502,202
Effective search space: 2210748680
Effective search space used: 2210748680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (26.9 bits)