RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10432
(440 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 6e-05
Identities = 55/412 (13%), Positives = 105/412 (25%), Gaps = 128/412 (31%)
Query: 94 CLTKFSSDFYILLYGRLFGGIATSILFSGFESWYVNEHLNYYL------FPVEWLNLTFA 147
L + +L+ G G SG ++W + Y F + WLN
Sbjct: 143 ALLELRPAKNVLIDG--VLG-------SG-KTWVALDVCLSYKVQCKMDFKIFWLN--LK 190
Query: 148 RATFGSGLFAIVSGFTAHFFADILNLGPIAPFAVAIPFLLGST---LFIYFCWEEH---- 200
+ ++ N + + I + S L + +
Sbjct: 191 NCNSPETVLEMLQKLLYQI---DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 201 ------YDPKTAKSSLLPNSMFSSLKFLFTNPC--LLT---LGIVQSIYEGIMYTFIFV- 248
+ K + F C LLT + +
Sbjct: 248 LVLLNVQNAKAWNA--------------FNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 249 ----WTP--VLEVLS----------PPLGLVFSCFMISIMIGSKIYSILILKYFKPETML 292
TP V +L P L + +S +I I + +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-IIAESI----------RDGLA 342
Query: 293 TLTVYLATFSITVSTVLTSSLFDSRRVLSTNL---CFVAFLIYEISVGMYCPVTGYLRGR 349
T + ++T++ SSL VL F ++ S
Sbjct: 343 TWDNWKHVNCDKLTTIIESSL----NVLEPAEYRKMFDRLSVFPPSAH------------ 386
Query: 350 IIPEKARATITNWLRVPTNFITCFTLIFIK----NEDAEGGKLIAIHSVFVV--CTACLL 403
IP + I W V + + K + + I+I S+++
Sbjct: 387 -IPTILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLENE 442
Query: 404 VALLASCVFKRLYLSRKYSCESE-----------------KDLQMSQKDESF 438
AL S V + + + + K+++ ++ F
Sbjct: 443 YALHRSIV-DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Score = 42.9 bits (100), Expect = 2e-04
Identities = 47/324 (14%), Positives = 99/324 (30%), Gaps = 86/324 (26%)
Query: 161 GFTAH----FFADILNLGP---------IAPFAVAIPFLLGSTLFIYFC-WE--EHYDPK 204
T L+ P P ++ ++ ++ W+ +H +
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDGLATWDNWKHVNCD 353
Query: 205 TAKSSLLPNSMFSSLKFLFTNPCLLTLGIVQSIYEGIMYTFIF---VWTP--VLEVLSPP 259
L + SSL L P + +++ + +F P +L ++
Sbjct: 354 K-----LTTIIESSLNVL--EPAEY-----RKMFDRL---SVFPPSAHIPTILLSLIW-- 396
Query: 260 LGLVFSCFMISIMIGSKIYSILILKYFKPETMLTLTVYLAT-FSITVSTVLTSSLFDSRR 318
++ S M+ ++ YS L+ K K T+ ++YL + L S+ D
Sbjct: 397 FDVIKSDVMV-VVNKLHKYS-LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 319 VLSTNLC------------FVAFLIYEIS-VGMYCPVTG----YLRGRIIPEKARATITN 361
+ F + + + + + +T +L R + +K R T
Sbjct: 455 IPK-TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 362 W------------LRVPTNFITCFTLIFIKNEDAEGGKLIAIHSVFVVCTACLLVALLAS 409
W L+ +I N+ + AI L+ +
Sbjct: 514 WNASGSILNTLQQLKFYKPYIC-------DNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 410 CVFKRLYLSRKYSC---ESEKDLQ 430
+ R+ L + E+ K +Q
Sbjct: 567 LL--RIALMAEDEAIFEEAHKQVQ 588
Score = 37.9 bits (87), Expect = 0.007
Identities = 38/305 (12%), Positives = 82/305 (26%), Gaps = 108/305 (35%)
Query: 9 TNMEFKRL--QVRYFIPFFLATFSDWIQ-GPYVYKVYKDYGYDEKNIAL----------- 54
+ + L +V P L+ ++ I+ G + +K D+ +
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 55 ---LYIAGFASSMIF-------------------GIVVGSIADKFGRKLICI------SY 86
++ + +F V + +K + + +
Sbjct: 371 YRKMFDR-LS---VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 87 GIVYTLCCLTKFSSDFYILLYGRLFGGIATSILFSGFESW---------YVNEHLNYYL- 136
I ++ K + L+ + + + F+S Y H+ ++L
Sbjct: 427 SI-PSIYLELKVKLENEYALHRSI---VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 137 ----------FPVEWLNLTFARATFGSGLFAIVSGFTAHFFADILNLGPIAPFAVAIPFL 186
F + +L+ F + ILN L
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKI------RHDSTAWNASGSILNT------------L 524
Query: 187 LGSTLFIYFCWEEHYDPKTAKSSLLPNSMFSSLKFLFT---------NPCLLTLGIVQ-- 235
L Y + + K L N++ L FL LL + ++
Sbjct: 525 Q--QLKFY---KPYICDNDPKYERLVNAI---LDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 236 -SIYE 239
+I+E
Sbjct: 577 EAIFE 581
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 44.2 bits (104), Expect = 6e-05
Identities = 48/363 (13%), Positives = 100/363 (27%), Gaps = 28/363 (7%)
Query: 8 KTNMEFKRLQVRYFIPFFLATFSDWIQGPYVYKVYKDY-GYDEKNIALLYIAGFASSMIF 66
N F + +F FF + P+ D + + +++ A S++F
Sbjct: 4 LKNTNFWMFGLFFFFYFF--IMGAYF--PFFPIWLHDINHISKSDTGIIFAAISLFSLLF 59
Query: 67 GIVVGSIADKFGRKLICISYGIVYTLCCLTKFSSDFYILLYGRLFGGIATSILFSGFE-- 124
+ G ++DK G + + + F F LL + G ++ GF
Sbjct: 60 QPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFN 119
Query: 125 -SWYVNEHLNYYLFPVEWLNLTFARA--TFGSGLFAIVSGFTAHFFADILNLGPIAPFAV 181
E + AR G L A + G + +
Sbjct: 120 AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALI 179
Query: 182 AIPFLLGSTLFIYFCWEEHYDPKTAKSSLLPNSMFSSLK---FLFTNPCLLTLGIVQSIY 238
L + S+ + F + ++ + ++
Sbjct: 180 LAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVF 239
Query: 239 EGIMYTFIFVWTPVLEVLSPPLGLVFSCFMIS--IMIGSKIYSILILKYFKPETMLTLTV 296
+ F + E + G V + + ++ ++ LI+ + L L
Sbjct: 240 DQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM---FFAPLIINRIGGKNALLLAG 296
Query: 297 YLATFSITVSTVLTSSLFDSRRVLSTNLCFVAFLIYEISVGMYCPVTGYLRGRIIPEKAR 356
+ + I S+ TS+L + ++ V +
Sbjct: 297 TIMSVRIIGSSFATSAL----------EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFS 346
Query: 357 ATI 359
ATI
Sbjct: 347 ATI 349
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 43.0 bits (102), Expect = 1e-04
Identities = 45/312 (14%), Positives = 99/312 (31%), Gaps = 65/312 (20%)
Query: 55 LYIAGFASSMIFGIVVGSIADKFGRK---LICISYGIVYTLCCLTKFSSDFYILLYGRLF 111
Y+ + S +F G I+D+ GR+ L+ +S ++ TL + +S +L+
Sbjct: 43 AYLLTYGVSQLF---YGPISDRVGRRPVILVGMSIFMLATLVAV--TTSSLTVLIAASAM 97
Query: 112 GGIATSI-----------LFSGFESWYVNEHLNYYLFPVEWLNLTFARA-----TFGSGL 155
G+ T + L+ + + N LN+ + G GL
Sbjct: 98 QGMGTGVGGVMARTLPRDLYERTQLRHANSL----------LNMGILVSPLLAPLIG-GL 146
Query: 156 FAIVSGFTAHFFADILNLGPIAPFAVAIPFLLGSTLFIYFCWEEHYDPKTAKSSLLPNSM 215
+ + A + + + F + + P+T +
Sbjct: 147 LDTMWNWRACYLF-------LLVLCAGVTFSMARWM-----------PETRPVDAPRTRL 188
Query: 216 FSSLKFLFTNPCLLTLGIVQSIYEGIMYTFI----FVWTPVLEVLSPPLGLVFSCFMISI 271
+S K LF N ++ + F + VL + S + ++F + +
Sbjct: 189 LTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAA 248
Query: 272 MIGSKIYSILILKYFKPETMLTLTVYLATFSITVSTVLTSSLFDSRRVLSTNLCFVAFLI 331
G+ ++ T++ +V + + + + L V +
Sbjct: 249 FFGAWFAGRPNKRF---STLMWQSVICCLLAGLLMWIPDWFGVMNVWTL-----LVPAAL 300
Query: 332 YEISVGMYCPVT 343
+ GM P+
Sbjct: 301 FFFGAGMLFPLA 312
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.006
Identities = 84/542 (15%), Positives = 155/542 (28%), Gaps = 197/542 (36%)
Query: 16 LQVRYFIP---FFLAT-----FSDWIQGPYVYKVYKDYGYDEKNIA--------LLYIA- 58
L+ +P FF+A+ F+ + P + + D++ L Y++
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPT-----EGFAADDEPTTPAELVGKFLGYVSS 70
Query: 59 -------------------GFASSMIFGIVVGSIADKFG---------RKLICISYGIVY 90
F + + G + ++A K K + +Y
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY---I 127
Query: 91 TLCCLTKF------SSDFY-------ILLYGRLFGGIATSILFSGFESWYVNE--HLNY- 134
T + K +S + L +FGG G Y E L Y
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVA-IFGG-------QGNTDDYFEELRDL-YQ 178
Query: 135 -YLFPVEWLNLTFARATFGSGLFAIVSGFTAHFFA--DIL------NLGPIAPFAVAIPF 185
Y V L + F+ T S L F +IL + P + ++IP
Sbjct: 179 TYHVLVGDL-IKFSAETL-SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 186 ---LLGST---LFIYFCWEEHYDPK-----------------------TAKS--SLLPNS 214
L+G ++ + P S S +
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 215 MFSSLKFLF--------TNPCL-LTLGIVQ-SIY--EGIMYTFIFVWTPVLEVLSPPLGL 262
++ LF P L I++ S+ EG+ +P+L + +
Sbjct: 297 R-KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-------SPMLSISNLTQEQ 348
Query: 263 VFSCFMISIM-----IGSKIYSILI--LKYF----KPETMLTLTVYL------------- 298
V ++ G ++ L+ K P+++ L + L
Sbjct: 349 VQD--YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 299 ATFS---ITVSTV-L-------TSSLFDSRRVLSTNLCFVAFLI--YEISVGMYCPVTGY 345
FS + S L + L + +++ +L +I + +Y G
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 346 -LR---GRIIPEKARATIT---NW---LRVPTNFITCF--------TLIFIKNEDAEGGK 387
LR G I I W + I F ++ +N+D G +
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVR 526
Query: 388 LI 389
+I
Sbjct: 527 VI 528
Score = 37.0 bits (85), Expect = 0.015
Identities = 26/182 (14%), Positives = 47/182 (25%), Gaps = 61/182 (33%)
Query: 197 WEEHYDPKTAKSSLLPNSMFSSLKFLFTNPCLLTL------GIVQSI---YEGIMYTFIF 247
W A + FS L + NP LT+ G + I Y +++ I
Sbjct: 1646 WNR------ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG--KRIRENYSAMIFETIV 1697
Query: 248 VWTPVLEVLSPPLGLVFSCFMISIMIGSKIYSILILKYFKPETMLTLTVY----LATFSI 303
E + + + + + + +L+ T + L
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYT----------------FRSEKGLLSATQFTQPALTLMEK 1741
Query: 304 TVSTVLTSSLFDSRRVLSTNLCFVAFLIYEISVGMY---CPVTGYL-----------RGR 349
L S + L A S+G Y + + RG
Sbjct: 1742 AAFEDLKS------KGLIPADATFAGH----SLGEYAALASLADVMSIESLVEVVFYRGM 1791
Query: 350 II 351
+
Sbjct: 1792 TM 1793
Score = 33.5 bits (76), Expect = 0.19
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 13/51 (25%)
Query: 138 PVEWLNLTFARAT----FGSGLFAIVSGFTAHF---------FADILNLGP 175
PV+W T +AT FG G + + T A L++ P
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 28.5 bits (64), Expect = 5.6
Identities = 42/362 (11%), Positives = 108/362 (29%), Gaps = 52/362 (14%)
Query: 7 EKTNMEFKRLQVRYFIPFFLATFS---DWIQGPYVYKVYKDYGYDEKNIALLYIAGFASS 63
+ + ++RL+ + F+ F + + G+ ++ +
Sbjct: 16 AEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAY 75
Query: 64 MIFGIVVGSIADKFGRKLICISYGIVYT-LCCL-----TKFSSDFYILLYGRLFGGIATS 117
++GS++D+ ++ + G++ L +S ++ G
Sbjct: 76 GFSKFIMGSVSDRSNPRVF-LPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQG 134
Query: 118 ILFSG----FESWYVNEHLNYYLFPVE----WLNLTFARATFGSGLFAIVSGFTAHFFAD 169
+ + W + + +++ G G+ ++ +F D
Sbjct: 135 MGWPPCGRTMVHW----------WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND 184
Query: 170 ILNLGPIAPFAVAIPFLLGSTLFIY-------FCWEEHY-----DPKTAKSSLLPNSMFS 217
+ P AI L + + E Y D K+ +
Sbjct: 185 W-HAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQI 243
Query: 218 SLKFLFTNPCLLTLGIVQSIYEGIMYTFIFVWTPV-------LEVLSPPLGLVFSCFMIS 270
++++ N L + I + Y + W+P + + + +
Sbjct: 244 FMQYVLPNKLLWYIAIANVFVYLLRYGILD-WSPTYLKEVKHFALDK--SSWAYFLYEYA 300
Query: 271 IMIGSKIYSILILKYFKPETMLTLTVYLATFSITVSTVLTSSLFDSRRVLSTNLCFVAFL 330
+ G+ + + K F+ T ++ +I V + + V + + FL
Sbjct: 301 GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI-VYWMNPAGNPTVDMICMIVIGFL 359
Query: 331 IY 332
IY
Sbjct: 360 IY 361
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi
hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP:
c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A*
2l3h_A 2l77_A 2l79_A
Length = 354
Score = 27.4 bits (60), Expect = 9.6
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 10 NMEFKRLQVRYFIPFFLATFSDWIQGPYVYKVYKDYGYDEKNIALLYIA---------GF 60
E RLQ + L Q P K+ Y + ++ L +A +
Sbjct: 220 QKEKSRLQGGVLVNEILNHMKRATQIPSYKKLIM-YSAHDTTVSGLQMALDVYNGLLPPY 278
Query: 61 ASSMIF 66
AS +
Sbjct: 279 ASCHLT 284
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.143 0.446
Gapped
Lambda K H
0.267 0.0810 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,720,205
Number of extensions: 402944
Number of successful extensions: 679
Number of sequences better than 10.0: 1
Number of HSP's gapped: 657
Number of HSP's successfully gapped: 17
Length of query: 440
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 344
Effective length of database: 4,021,377
Effective search space: 1383353688
Effective search space used: 1383353688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.4 bits)