RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10432
         (440 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 45/425 (10%), Positives = 121/425 (28%), Gaps = 22/425 (5%)

Query: 7   EKTNMEFKRLQVRYFIPFFLATFS---DWIQGPYVYKVYKDYGYDEKNIALLYIAGFASS 63
            + +  ++RL+ + F+  F    +                + G+   ++         + 
Sbjct: 13  AEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAY 72

Query: 64  MIFGIVVGSIADKFGRKLICISYGIVYTLCCLTKFSSDFYILLYGRLFGGIATSILFSGF 123
                ++GS++D+   ++   +  I+     L      +       +F  +     F G 
Sbjct: 73  GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGM 132

Query: 124 ESWYVNEHLNYYLFPV---EWLNLTFARATFGSGLFAIVSGFTAHFFADILNLGPIAPFA 180
                   + ++         +++       G G+  ++      +F D      +  F 
Sbjct: 133 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC 192

Query: 181 VAIPFLLGSTLFIYFCWEEHYDPKTAKSSLLPNSMFSS-----------LKFLFTNPCLL 229
             +  L    +           P     +  P+                ++++  N  L 
Sbjct: 193 AILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLW 252

Query: 230 TLGIVQSIYEGIMYTFIFVWTPVLEVLSPPLGLVFSCFMISIMIGSKIYSILILKYFKPE 289
            + I       + Y  +  W+P          L  S +   +   + I   L+  +   +
Sbjct: 253 YIAIANVFVYLLRYGILD-WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK 311

Query: 290 TMLTLTVYLATFSITVSTVLTSSLFDSRRVLSTNLCFVAFLIYEISVGMYCPVTGYLRGR 349
                      F +T+ T+ T  ++      +  +  +  ++    +     + G     
Sbjct: 312 VFRGNRGATGVFFMTLVTIAT-IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALE 370

Query: 350 IIPEKARATITNWLRVPTNFITCFTLIFIKNEDAEGGKLIAIHSVFVVCTACLLVALLAS 409
           + P+KA  T   +  +            I     +          F+V     ++A++  
Sbjct: 371 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVILL 427

Query: 410 CVFKR 414
            V   
Sbjct: 428 IVVMI 432


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 45/405 (11%), Positives = 92/405 (22%), Gaps = 23/405 (5%)

Query: 19  RYFIPFFLATFSDWIQGPYVYKVYKD-YGYDEKNIALLYIAGFASSMIFGIVVGSIADKF 77
            + + FF   F      P+      D     + +  +++ A    S++F  + G ++DK 
Sbjct: 11  MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL 70

Query: 78  GRKLICISYGIVYTLCCL-----TKFSSDFYILLYGRLFGGIATSILFSGFESWYVNEHL 132
           G +   +       +               Y +L G + GGI     F+           
Sbjct: 71  GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE 130

Query: 133 NYYLFPVEWLNLTFARATFGSGLFAIVSGFTAHFFADILNLGPIAPFAVAIPFLLGSTLF 192
                              G  L A + G         +         +    L  +   
Sbjct: 131 KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190

Query: 193 IYFCWEEHYDPKTAKSSLLPNSMFSSLKFLFTNPCLLTLGIVQSIYEGIMYTFIFVWTPV 252
                          S+          +        L +  V   Y+     F   +T  
Sbjct: 191 APSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF 250

Query: 253 LEVLSPPLGLVFSCFMISIMIGSKIYSILILKYFKPETMLTLTVYLATFSITVSTVLTSS 312
                    +      +  ++ + I     L   +      L +     S+         
Sbjct: 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSV--------R 302

Query: 313 LFDSRRVLSTNLCFVAFLIYEISVGMYCPVTGYLRGRIIPEKARATITNWLRVPTNFITC 372
           +  S    S     +   ++   V                 +  ATI          +  
Sbjct: 303 IIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAM 362

Query: 373 FTLIFIKNEDAEGGKLIA---IHSVFVVCTACLLVALLASCVFKR 414
             +  +       G +         ++V     L   L S     
Sbjct: 363 IFMSVL------AGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401


>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 162

 Score = 26.7 bits (59), Expect = 4.3
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 175 PIAPFAVAIPFLLGSTLFIY----FCWEEHYDPKTAK 207
           P     +A+P L G T  +Y     C  +H+ P  A+
Sbjct: 89  PTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWAR 125


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.143    0.446 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,657,178
Number of extensions: 77843
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 9
Length of query: 440
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 352
Effective length of database: 1,199,356
Effective search space: 422173312
Effective search space used: 422173312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.7 bits)