BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10433
         (152 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q641X9|RM09_RAT 39S ribosomal protein L9, mitochondrial OS=Rattus norvegicus
           GN=Mrpl9 PE=2 SV=1
          Length = 262

 Score = 34.3 bits (77), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/94 (21%), Positives = 38/94 (40%)

Query: 20  NAAGDRPKTYRRLIPADVLRDFPGMCFASTKCTTVEVGQAWELAPFCGRSTCVKAEEDNR 79
            AA  R +    L+   + R  PG  F+ +   +  + + W   P  G     +    +R
Sbjct: 16  GAAWLRQRGIGELLQPRIERSTPGRDFSLSHYQSTVIVERWWKVPLAGEGRKPRLHRRHR 75

Query: 80  LLELVEDCGPLPKANPKCKLSEKTNKTAPFPDCC 113
           + +LVED    PK + +  L++  ++     D  
Sbjct: 76  VYKLVEDTKHRPKDHLELILTQSVDEIGVRGDLV 109


>sp|B9VJ80|UBA5_BOMMO Ubiquitin-like modifier-activating enzyme 5 OS=Bombyx mori PE=2
           SV=1
          Length = 393

 Score = 30.0 bits (66), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 64  PFCGRSTCVKAEEDNRLL-------ELVEDCGPLPKANPKCKLSEKTNKTAPFPDCCPTF 116
           P C  ++C   +E  RL        E+ EDCGP+ + N       + N  +P  + CP  
Sbjct: 292 PTCDDASCRARQEQRRLQPRVELAAEVTEDCGPVHQDNDWGISVLEEN--SPADEDCPGL 349

Query: 117 ECEPGVKLEY--PEIPAAPEGEAKKPAAKS 144
           +   GV++ Y  P   + PE       A S
Sbjct: 350 KLVDGVQVAYSIPVDSSTPESSTGGAVAAS 379


>sp|Q8TC27|ADA32_HUMAN Disintegrin and metalloproteinase domain-containing protein 32
           OS=Homo sapiens GN=ADAM32 PE=1 SV=2
          Length = 787

 Score = 29.6 bits (65), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 13/59 (22%)

Query: 66  CGRSTCVKAEEDNRLLELVEDCGPLPKANPKCKLSEKTNKTAPFPDCCPTFECEPGVKL 124
           C +  C K   D ++L+   +C   PKA+P+C ++E  N T+P        EC P + L
Sbjct: 432 CYKGLCCK---DCQILQSGVEC--RPKAHPECDIAENCNGTSP--------ECGPDITL 477


>sp|Q6LUJ8|FTSH_PHOPR ATP-dependent zinc metalloprotease FtsH OS=Photobacterium profundum
           GN=ftsH PE=3 SV=1
          Length = 696

 Score = 29.6 bits (65), Expect = 7.2,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%)

Query: 98  KLSEKTNKTAPFPDCCPTFECEPGVKLEYPEIPAAPEGEAKKPAAKSAPKPKAK 151
           K S  T+++AP        E +    +E  E P A + E  KP A+ APK   K
Sbjct: 640 KSSPTTSESAPEAKTESAPEAKAEANVETEEKPVAADSEELKPKAEQAPKEDDK 693


>sp|Q6A8J1|SYD_PROAC Aspartate--tRNA ligase OS=Propionibacterium acnes (strain KPA171202
           / DSM 16379) GN=aspS PE=3 SV=1
          Length = 606

 Score = 29.6 bits (65), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 106 TAPFPDCCPTFECEPGVKLEY 126
           T+P PDC  TF+ +PG  L Y
Sbjct: 455 TSPTPDCLDTFDTDPGSALAY 475


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.133    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,005,060
Number of Sequences: 539616
Number of extensions: 2454065
Number of successful extensions: 7231
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 7056
Number of HSP's gapped (non-prelim): 229
length of query: 152
length of database: 191,569,459
effective HSP length: 107
effective length of query: 45
effective length of database: 133,830,547
effective search space: 6022374615
effective search space used: 6022374615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)