Query psy10433
Match_columns 152
No_of_seqs 92 out of 94
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 17:48:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15430 SVWC: Single domain v 99.6 2.4E-15 5.1E-20 100.1 6.5 65 45-118 1-65 (65)
2 smart00214 VWC von Willebrand 82.3 2.2 4.7E-05 27.9 3.5 26 45-73 1-26 (59)
3 PF08194 DIM: DIM protein; In 76.8 3.7 8.1E-05 25.7 3.0 19 1-19 1-19 (36)
4 PF13956 Ibs_toxin: Toxin Ibs, 75.0 1.3 2.8E-05 24.1 0.5 17 1-17 2-18 (19)
5 PF03032 Brevenin: Brevenin/es 67.5 3.2 7E-05 27.1 1.2 18 3-20 8-25 (46)
6 PF00093 VWC: von Willebrand f 66.9 6 0.00013 25.7 2.5 38 45-89 1-38 (57)
7 cd00061 FN1 Fibronectin type 1 62.7 7.3 0.00016 24.8 2.2 29 43-71 1-29 (43)
8 PF00039 fn1: Fibronectin type 47.5 16 0.00035 22.7 1.9 27 45-71 1-27 (39)
9 PF15240 Pro-rich: Proline-ric 44.1 15 0.00033 30.2 1.8 19 1-19 1-19 (179)
10 PF12115 Salp15: Salivary prot 42.9 14 0.00031 27.6 1.3 9 38-46 36-44 (118)
11 PRK10523 lipoprotein involved 41.4 49 0.0011 28.2 4.5 30 26-62 42-71 (234)
12 smart00215 VWC_out von Willebr 41.2 32 0.00069 23.7 2.8 24 45-72 1-24 (67)
13 PF07771 TSGP1: Tick salivary 40.1 13 0.00029 28.5 0.8 19 1-19 1-19 (120)
14 PF00879 Defensin_propep: Defe 34.8 48 0.001 22.2 2.7 20 1-20 1-20 (52)
15 COG3771 Predicted membrane pro 32.6 49 0.0011 24.8 2.7 19 1-19 1-19 (97)
16 PF11714 Inhibitor_I53: Thromb 32.3 46 0.001 23.9 2.5 19 1-19 1-20 (78)
17 PF07172 GRP: Glycine rich pro 32.1 38 0.00083 24.8 2.1 14 6-19 11-24 (95)
18 PRK09783 copper/silver efflux 31.7 58 0.0013 28.9 3.6 24 26-49 42-65 (409)
19 smart00058 FN1 Fibronectin typ 31.3 44 0.00096 21.5 2.1 21 45-65 1-21 (45)
20 PF10855 DUF2648: Protein of u 31.2 21 0.00045 22.0 0.5 19 1-19 1-19 (33)
21 PF12071 DUF3551: Protein of u 30.7 93 0.002 22.3 3.9 12 38-49 38-49 (82)
22 PF10731 Anophelin: Thrombin i 30.0 62 0.0013 22.6 2.7 18 2-19 4-22 (65)
23 COG3915 Uncharacterized protei 29.0 37 0.0008 27.4 1.7 20 1-20 4-24 (155)
24 TIGR02052 MerP mercuric transp 28.2 45 0.00098 21.2 1.8 19 1-19 1-20 (92)
25 PF03866 HAP: Hydrophobic abun 27.8 45 0.00097 26.9 2.0 20 1-20 2-22 (164)
26 PF15284 PAGK: Phage-encoded v 26.4 77 0.0017 22.0 2.7 23 4-26 9-31 (61)
27 PF12454 Ecm33: GPI-anchored c 26.3 53 0.0012 20.9 1.7 18 1-18 4-21 (40)
28 PF12714 TILa: TILa domain 26.2 1.3E+02 0.0029 19.6 3.8 46 45-100 2-49 (56)
29 PF09403 FadA: Adhesion protei 25.3 24 0.00051 27.4 0.0 19 1-19 1-21 (126)
30 PRK09934 fimbrial-like adhesin 24.3 1.1E+02 0.0023 23.9 3.5 78 1-89 1-82 (171)
31 PRK00888 ftsB cell division pr 24.2 68 0.0015 23.7 2.3 15 1-15 1-15 (105)
32 smart00817 Amelin Ameloblastin 21.5 83 0.0018 28.9 2.7 32 1-48 1-33 (411)
33 PRK11505 hypothetical protein; 21.3 84 0.0018 24.0 2.3 17 1-17 1-17 (106)
34 COG2143 Thioredoxin-related pr 21.3 77 0.0017 26.2 2.2 19 1-19 2-20 (182)
35 PF12276 DUF3617: Protein of u 21.2 86 0.0019 23.7 2.4 7 94-100 90-96 (162)
36 PF05436 MF_alpha_N: Mating fa 20.5 1.1E+02 0.0023 22.6 2.6 15 1-15 1-15 (86)
37 PF04467 DUF483: Protein of un 20.0 28 0.0006 27.4 -0.6 12 104-115 42-53 (128)
No 1
>PF15430 SVWC: Single domain von Willebrand factor type C
Probab=99.60 E-value=2.4e-15 Score=100.06 Aligned_cols=65 Identities=34% Similarity=0.818 Sum_probs=57.6
Q ss_pred eeecCCCeeecCCceeccCCCccceeeccCccCccceeEecccCCCCCCCCCCeeeccCCCCCCCCCCCCcccc
Q psy10433 45 CFASTKCTTVEVGQAWELAPFCGRSTCVKAEEDNRLLELVEDCGPLPKANPKCKLSEKTNKTAPFPDCCPTFEC 118 (152)
Q Consensus 45 Cy~~~~~~~l~~Ges~~~~p~C~r~tC~~~~~~~~~~l~I~~CG~~~l~~p~Ckl~e~~D~t~pYP~CCPk~~C 118 (152)
|+|.+ .+|+.|++|.+..+|++|+|. .++..++|++|+.... .++|++.. |.+++||+|||+++|
T Consensus 1 C~y~~--~~~~~g~~~~~~~pC~~~~C~----~~~~~v~v~~C~~~~~-~~~C~~~~--~~~~~yP~CCp~~~C 65 (65)
T PF15430_consen 1 CYYNG--RTIPSGESYNPEEPCERWTCD----ASDGYVTVEGCPPPAP-PPGCELVP--DPTGPYPDCCPKYVC 65 (65)
T ss_pred CEECC--EEcCCCcEecCCCCCceEEEE----CCCCEEEEEeCCCCCC-CCCCEEcc--CCCCCCCCCCCCccC
Confidence 78887 899999999999999999995 2344679999999884 69999996 999999999999987
No 2
>smart00214 VWC von Willebrand factor (vWF) type C domain.
Probab=82.28 E-value=2.2 Score=27.93 Aligned_cols=26 Identities=23% Similarity=0.634 Sum_probs=20.7
Q ss_pred eeecCCCeeecCCceeccCCCccceeecc
Q psy10433 45 CFASTKCTTVEVGQAWELAPFCGRSTCVK 73 (152)
Q Consensus 45 Cy~~~~~~~l~~Ges~~~~p~C~r~tC~~ 73 (152)
|++.+ .++..|++|.. +.|..=+|..
T Consensus 1 C~~~g--~~y~~G~~W~~-~~C~~C~C~~ 26 (59)
T smart00214 1 CVHNG--EVYNDGETWKP-DPCQICTCLD 26 (59)
T ss_pred CccCC--EEeCCCCEECC-CCCeECCcCC
Confidence 66766 89999999986 5699888844
No 3
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=76.83 E-value=3.7 Score=25.68 Aligned_cols=19 Identities=42% Similarity=0.562 Sum_probs=11.0
Q ss_pred ChhHHHHHHHHHHHHHhhh
Q psy10433 1 MKVIAFAFAFVLAVNAAEK 19 (152)
Q Consensus 1 m~~~~~~l~~~~~~~aa~~ 19 (152)
||+|.++++++.++++++.
T Consensus 1 Mk~l~~a~~l~lLal~~a~ 19 (36)
T PF08194_consen 1 MKCLSLAFALLLLALAAAV 19 (36)
T ss_pred CceeHHHHHHHHHHHHhcc
Confidence 8988654444444455544
No 4
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=75.00 E-value=1.3 Score=24.13 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=9.6
Q ss_pred ChhHHHHHHHHHHHHHh
Q psy10433 1 MKVIAFAFAFVLAVNAA 17 (152)
Q Consensus 1 m~~~~~~l~~~~~~~aa 17 (152)
||++++++.++.+||+|
T Consensus 2 Mk~vIIlvvLLliSf~a 18 (19)
T PF13956_consen 2 MKLVIILVVLLLISFPA 18 (19)
T ss_pred ceehHHHHHHHhccccC
Confidence 78776444444456644
No 5
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=67.51 E-value=3.2 Score=27.06 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHhhhh
Q psy10433 3 VIAFAFAFVLAVNAAEKN 20 (152)
Q Consensus 3 ~~~~~l~~~~~~~aa~~~ 20 (152)
+|+|||.+|++|+..+..
T Consensus 8 lLlfflG~ISlSlCeeEr 25 (46)
T PF03032_consen 8 LLLFFLGTISLSLCEEER 25 (46)
T ss_pred HHHHHHHHcccchHHHhc
Confidence 445888899999987664
No 6
>PF00093 VWC: von Willebrand factor type C domain; InterPro: IPR001007 The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. The domain is named after the von Willebrand factor (VWF) type C repeat which is found in multidomain protein/multifunctional proteins involved in maintaining homeostasis [, ]. For the von Willebrand factor the duplicated VWFC domain is thought to participate in oligomerization, but not in the initial dimerization step []. The presence of this region in a number of other complex-forming proteins points to the possible involvment of the VWFC domain in complex formation.; GO: 0005515 protein binding; PDB: 1U5M_A.
Probab=66.94 E-value=6 Score=25.69 Aligned_cols=38 Identities=24% Similarity=0.582 Sum_probs=19.8
Q ss_pred eeecCCCeeecCCceeccCCCccceeeccCccCccceeEecccCC
Q psy10433 45 CFASTKCTTVEVGQAWELAPFCGRSTCVKAEEDNRLLELVEDCGP 89 (152)
Q Consensus 45 Cy~~~~~~~l~~Ges~~~~p~C~r~tC~~~~~~~~~~l~I~~CG~ 89 (152)
|.+.+ .++..|++|.+.+ |..=+|.. +...=....|++
T Consensus 1 C~~~g--~~y~~g~~w~~~~-C~~C~C~~----G~v~C~~~~Cp~ 38 (57)
T PF00093_consen 1 CSFNG--RVYQNGESWHPDP-CTTCTCQD----GEVQCSRIQCPP 38 (57)
T ss_dssp EESSS---EE-SS-EE-S-S-SEEEEEET----TEEEEEE---S-
T ss_pred CeeCC--EEeCCCCEECCCC-CcEeEecC----CEEEEcCCCCcC
Confidence 66777 8999999998765 99888843 222334455665
No 7
>cd00061 FN1 Fibronectin type 1 domain, approximately 40 residue long with two conserved disulfide bridges. FN1 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and actin, usually exists as a dimer in plasma and as an insoluble multimer in extracellular matrices. Dimers of nearly identical subunits are linked by a disulfide bond close to their C-terminus. FN1 domains also found in coagulation factor XII, HGF activator, and tissue-type plasminogen activator. In tissue plasminogen activator, FN1 domains may form functional fibrin-binding units with EGF-like domains C-terminal to FN1.
Probab=62.69 E-value=7.3 Score=24.79 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=21.6
Q ss_pred CCeeecCCCeeecCCceeccCCCccceee
Q psy10433 43 GMCFASTKCTTVEVGQAWELAPFCGRSTC 71 (152)
Q Consensus 43 GkCy~~~~~~~l~~Ges~~~~p~C~r~tC 71 (152)
.+||+..+...+..|++|.+...=..+.|
T Consensus 1 ~~C~d~~t~~~Y~ige~W~r~~~~~~~~C 29 (43)
T cd00061 1 EKCFDPQTGVFYRVGETWERPSEGHVLQC 29 (43)
T ss_pred CcCCcCCcccEEeCCCEEEeecCCeEEEE
Confidence 37999988899999999976554233333
No 8
>PF00039 fn1: Fibronectin type I domain; InterPro: IPR000083 Fibronectin type I repeats are one of the three repeats found in the fibronectin protein. Fibronectin is a plasma protein that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and actin. Type I domain (FN1) is approximately 40 residues in length. Four conserved cysteines are involved in disulphide bonds. The 3D structure of the FN1 domain has been determined [, , ]. It consists of two antiparallel beta-sheets, first a double-stranded one, that is linked by a disulphide bond to a triple-stranded beta-sheet. The second conserved disulphide bridge links the C-terminal adjacent strands of the domain. In human tissue plasminogen activator chain A the FN1 domain together with the following epidermal growth factor (EGF)-like domain are involved in fibrin-binding []. It has been suggested that these two modules form a single structural and functional unit []. The two domains keep their specific tertiary structure, but interact intimately to bury a hydrophobic core; the inter-module linker makes up the third strand of the EGF-module's major beta-sheet.; GO: 0005576 extracellular region; PDB: 2RKY_A 1FBR_A 2RL0_D 3M7P_A 3MQL_A 3ZRZ_A 2RKZ_F 2CKU_A 2CG6_A 3CAL_C ....
Probab=47.53 E-value=16 Score=22.70 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=19.9
Q ss_pred eeecCCCeeecCCceeccCCCccceee
Q psy10433 45 CFASTKCTTVEVGQAWELAPFCGRSTC 71 (152)
Q Consensus 45 Cy~~~~~~~l~~Ges~~~~p~C~r~tC 71 (152)
|++..+..+...|++|.+...=.++.|
T Consensus 1 C~d~~t~~~Y~vge~W~R~~~g~~~~C 27 (39)
T PF00039_consen 1 CFDPDTGQFYQVGETWERPYQGHMMQC 27 (39)
T ss_dssp EEETTTTEEEETTEEEEEEETSSEEEE
T ss_pred CCcCCCccEEeCCCEEEeecCCeEEEe
Confidence 788676799999999976655344444
No 9
>PF15240 Pro-rich: Proline-rich
Probab=44.12 E-value=15 Score=30.18 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=8.6
Q ss_pred ChhHHHHHHHHHHHHHhhh
Q psy10433 1 MKVIAFAFAFVLAVNAAEK 19 (152)
Q Consensus 1 m~~~~~~l~~~~~~~aa~~ 19 (152)
|-+|+|.+++++||.|+..
T Consensus 1 MLlVLLSvALLALSSAQ~~ 19 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQST 19 (179)
T ss_pred ChhHHHHHHHHHhhhcccc
Confidence 4444444444444444443
No 10
>PF12115 Salp15: Salivary protein of 15kDa inhibits CD4+ T cell activation; InterPro: IPR021971 This is a family of 15kDa salivary proteins from Acari Arachnids that is induced on feeding and assists the parasite to remain attached to its arthropod host. By repressing calcium fluxes triggered by TCR engagement, Salp15 inhibits CD4+ T cell activation. Salp15 shows weak similarity to Inhibin A, a member of the TGF-beta superfamily that inhibits the production of cytokines and the proliferation of T cells.
Probab=42.87 E-value=14 Score=27.64 Aligned_cols=9 Identities=22% Similarity=0.504 Sum_probs=5.9
Q ss_pred CCCCCCCee
Q psy10433 38 LRDFPGMCF 46 (152)
Q Consensus 38 h~d~PGkCy 46 (152)
.|+|.+.|-
T Consensus 36 ~p~~i~~~~ 44 (118)
T PF12115_consen 36 FPSLIGNCK 44 (118)
T ss_pred CcccCccch
Confidence 347777776
No 11
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=41.39 E-value=49 Score=28.15 Aligned_cols=30 Identities=23% Similarity=0.556 Sum_probs=22.5
Q ss_pred CcceeeeccCCCCCCCCCCeeecCCCeeecCCceecc
Q psy10433 26 PKTYRRLIPADVLRDFPGMCFASTKCTTVEVGQAWEL 62 (152)
Q Consensus 26 ~~~y~~iipad~h~d~PGkCy~~~~~~~l~~Ges~~~ 62 (152)
...|++++|.+ |-+| ++. -++|....+|.+
T Consensus 42 ~gtY~G~LPCA---DC~G---I~t-tLtL~~DgTY~L 71 (234)
T PRK10523 42 QQSWRGVLPCA---DCEG---IET-SLFLEKDGTWVM 71 (234)
T ss_pred ccEEeEEEECC---CCCC---ceE-EEEEcCCCCEEE
Confidence 67999999988 7777 444 278887777653
No 12
>smart00215 VWC_out von Willebrand factor (vWF) type C domain.
Probab=41.24 E-value=32 Score=23.75 Aligned_cols=24 Identities=29% Similarity=0.868 Sum_probs=19.0
Q ss_pred eeecCCCeeecCCceeccCCCccceeec
Q psy10433 45 CFASTKCTTVEVGQAWELAPFCGRSTCV 72 (152)
Q Consensus 45 Cy~~~~~~~l~~Ges~~~~p~C~r~tC~ 72 (152)
|++.+ +++.+|++|. ..|.+=||.
T Consensus 1 C~~~G--~~y~~g~~w~--d~Cn~CtC~ 24 (67)
T smart00215 1 CYNNG--SYYPPGAKWD--DDCNRCTCL 24 (67)
T ss_pred CeECC--EEcCCCCccc--cCCCCCEec
Confidence 56676 8999999995 568887783
No 13
>PF07771 TSGP1: Tick salivary peptide group 1; InterPro: IPR011694 This entry contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis (Black-legged tick) []. Also present are peptides from a related tick species, Ixodes ricinus (Sheep tick). They are characterised by a putative signal peptide, indicative of secretion, and conserved cysteine residues.
Probab=40.10 E-value=13 Score=28.49 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=13.7
Q ss_pred ChhHHHHHHHHHHHHHhhh
Q psy10433 1 MKVIAFAFAFVLAVNAAEK 19 (152)
Q Consensus 1 m~~~~~~l~~~~~~~aa~~ 19 (152)
|++..++|.+|+|||....
T Consensus 1 m~~~~~~~vlv~la~~~~~ 19 (120)
T PF07771_consen 1 MGLTVVTLVLVSLAFFGSA 19 (120)
T ss_pred CcceeehhhHHhHHhhhhh
Confidence 7877777777888776544
No 14
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=34.76 E-value=48 Score=22.23 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=15.8
Q ss_pred ChhHHHHHHHHHHHHHhhhh
Q psy10433 1 MKVIAFAFAFVLAVNAAEKN 20 (152)
Q Consensus 1 m~~~~~~l~~~~~~~aa~~~ 20 (152)
||.|+++.+++.+++-|..+
T Consensus 1 MRTL~LLaAlLLlAlqaQAe 20 (52)
T PF00879_consen 1 MRTLALLAALLLLALQAQAE 20 (52)
T ss_pred CcHHHHHHHHHHHHHHHhcc
Confidence 89888887888888877763
No 15
>COG3771 Predicted membrane protein [Function unknown]
Probab=32.56 E-value=49 Score=24.76 Aligned_cols=19 Identities=21% Similarity=0.065 Sum_probs=12.3
Q ss_pred ChhHHHHHHHHHHHHHhhh
Q psy10433 1 MKVIAFAFAFVLAVNAAEK 19 (152)
Q Consensus 1 m~~~~~~l~~~~~~~aa~~ 19 (152)
||+|+.+++|.++..-|..
T Consensus 1 mKyil~~vlvlaifliavt 19 (97)
T COG3771 1 MKYILIFVLVLAIFLIAVT 19 (97)
T ss_pred ChhHHHHHHHHHHHHHHhh
Confidence 8988766666665555544
No 16
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=32.33 E-value=46 Score=23.94 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=10.3
Q ss_pred Ch-hHHHHHHHHHHHHHhhh
Q psy10433 1 MK-VIAFAFAFVLAVNAAEK 19 (152)
Q Consensus 1 m~-~~~~~l~~~~~~~aa~~ 19 (152)
|| |.+++|++|+.+..-++
T Consensus 1 MKhFaiLilavVaSAvVMAy 20 (78)
T PF11714_consen 1 MKHFAILILAVVASAVVMAY 20 (78)
T ss_pred CchHHHHHHHHHHHHHHHhc
Confidence 66 55566666654444333
No 17
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=32.14 E-value=38 Score=24.82 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhhh
Q psy10433 6 FAFAFVLAVNAAEK 19 (152)
Q Consensus 6 ~~l~~~~~~~aa~~ 19 (152)
++|++|.+.+++++
T Consensus 11 l~LA~lLlisSeva 24 (95)
T PF07172_consen 11 LLLAALLLISSEVA 24 (95)
T ss_pred HHHHHHHHHHhhhh
Confidence 33434444444433
No 18
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=31.73 E-value=58 Score=28.92 Aligned_cols=24 Identities=13% Similarity=-0.041 Sum_probs=17.9
Q ss_pred CcceeeeccCCCCCCCCCCeeecC
Q psy10433 26 PKTYRRLIPADVLRDFPGMCFAST 49 (152)
Q Consensus 26 ~~~y~~iipad~h~d~PGkCy~~~ 49 (152)
+--|+.=.....++|.||||=+=+
T Consensus 42 ~~~~~~pm~p~~~~~~pg~~p~~~ 65 (409)
T PRK09783 42 VLFWYDPMYPNTRFDKPGKSPFMD 65 (409)
T ss_pred eEEEeCCCCCCcCCCCCCCCCCCC
Confidence 344665566888999999998755
No 19
>smart00058 FN1 Fibronectin type 1 domain. One of three types of internal repeat within the plasma protein, fibronectin. Found also in coagulation factor XII, HGF activator and tissue-type plasminogen activator. In t-PA and fibronectin, this domain type contributes to fibrin-binding.
Probab=31.32 E-value=44 Score=21.45 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=17.8
Q ss_pred eeecCCCeeecCCceeccCCC
Q psy10433 45 CFASTKCTTVEVGQAWELAPF 65 (152)
Q Consensus 45 Cy~~~~~~~l~~Ges~~~~p~ 65 (152)
||++.+...+..|++|.+...
T Consensus 1 C~D~~t~~~Y~ige~W~r~~~ 21 (45)
T smart00058 1 CFDEDTGTTYRIGDTWERPYE 21 (45)
T ss_pred CccCCcccEEecCCEEEeecC
Confidence 788877899999999977655
No 20
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=31.19 E-value=21 Score=21.99 Aligned_cols=19 Identities=26% Similarity=0.067 Sum_probs=12.9
Q ss_pred ChhHHHHHHHHHHHHHhhh
Q psy10433 1 MKVIAFAFAFVLAVNAAEK 19 (152)
Q Consensus 1 m~~~~~~l~~~~~~~aa~~ 19 (152)
||=|+++|.++++.|-+-.
T Consensus 1 MKkl~i~L~l~ga~f~~fK 19 (33)
T PF10855_consen 1 MKKLAIILILGGAAFYGFK 19 (33)
T ss_pred CCceeehhhhhhHHHHHHH
Confidence 7766677777777776543
No 21
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=30.69 E-value=93 Score=22.30 Aligned_cols=12 Identities=42% Similarity=0.601 Sum_probs=9.0
Q ss_pred CCCCCCCeeecC
Q psy10433 38 LRDFPGMCFAST 49 (152)
Q Consensus 38 h~d~PGkCy~~~ 49 (152)
..++||.|.|.+
T Consensus 38 ~~g~~g~C~y~t 49 (82)
T PF12071_consen 38 GWGYPGDCSYST 49 (82)
T ss_pred CCCCCccCCcCC
Confidence 347888888877
No 22
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=29.97 E-value=62 Score=22.63 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=10.0
Q ss_pred hhHH-HHHHHHHHHHHhhh
Q psy10433 2 KVIA-FAFAFVLAVNAAEK 19 (152)
Q Consensus 2 ~~~~-~~l~~~~~~~aa~~ 19 (152)
|+++ .+|+++.+++++.+
T Consensus 4 Kl~vialLC~aLva~vQ~A 22 (65)
T PF10731_consen 4 KLIVIALLCVALVAIVQSA 22 (65)
T ss_pred hhhHHHHHHHHHHHHHhcC
Confidence 4444 55566666665555
No 23
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.04 E-value=37 Score=27.37 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=17.6
Q ss_pred ChhHH-HHHHHHHHHHHhhhh
Q psy10433 1 MKVIA-FAFAFVLAVNAAEKN 20 (152)
Q Consensus 1 m~~~~-~~l~~~~~~~aa~~~ 20 (152)
||+++ .||++.++++|++++
T Consensus 4 ~r~ll~~fL~l~~~slaqa~~ 24 (155)
T COG3915 4 MRVLLLTFLALISSSLAQAEP 24 (155)
T ss_pred HHHHHHHHHHHHhhHHhhcCc
Confidence 67777 899999999999995
No 24
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=28.20 E-value=45 Score=21.18 Aligned_cols=19 Identities=37% Similarity=0.305 Sum_probs=12.6
Q ss_pred ChhHH-HHHHHHHHHHHhhh
Q psy10433 1 MKVIA-FAFAFVLAVNAAEK 19 (152)
Q Consensus 1 m~~~~-~~l~~~~~~~aa~~ 19 (152)
||-|+ +++++|++++-+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (92)
T TIGR02052 1 MKKLATLLALFVLTSLPAWA 20 (92)
T ss_pred ChhHHHHHHHHHHhcchhhh
Confidence 77666 77777777665444
No 25
>PF03866 HAP: Hydrophobic abundant protein (HAP) ; InterPro: IPR005566 Expression of Hydrophobic Abundant protein is thought to be developmentally regulated and possibly involved in spherule cell wall formation [].
Probab=27.80 E-value=45 Score=26.86 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=14.4
Q ss_pred ChhHHHHHHHHHHH-HHhhhh
Q psy10433 1 MKVIAFAFAFVLAV-NAAEKN 20 (152)
Q Consensus 1 m~~~~~~l~~~~~~-~aa~~~ 20 (152)
|||+++.|++.+++ +|.+.+
T Consensus 2 mkyvfvalc~~avvalate~~ 22 (164)
T PF03866_consen 2 MKYVFVALCLFAVVALATEVE 22 (164)
T ss_pred chhHHHHHHHHHHHHHhhHHH
Confidence 89998888877766 554443
No 26
>PF15284 PAGK: Phage-encoded virulence factor
Probab=26.35 E-value=77 Score=21.98 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCC
Q psy10433 4 IAFAFAFVLAVNAAEKNAAGDRP 26 (152)
Q Consensus 4 ~~~~l~~~~~~~aa~~~~~~~~~ 26 (152)
|+++|.+.+..|.|..-+++..+
T Consensus 9 L~l~~~LsA~~FSasamAa~~~~ 31 (61)
T PF15284_consen 9 LALVFILSAAGFSASAMAADSSP 31 (61)
T ss_pred HHHHHHHHHhhhhHHHHHHhhCC
Confidence 33333333444443332333333
No 27
>PF12454 Ecm33: GPI-anchored cell wall organization protein
Probab=26.27 E-value=53 Score=20.91 Aligned_cols=18 Identities=33% Similarity=0.111 Sum_probs=13.7
Q ss_pred ChhHHHHHHHHHHHHHhh
Q psy10433 1 MKVIAFAFAFVLAVNAAE 18 (152)
Q Consensus 1 m~~~~~~l~~~~~~~aa~ 18 (152)
+||++-+|++++.++||.
T Consensus 4 ~Ky~lpAlaaag~a~A~s 21 (40)
T PF12454_consen 4 SKYLLPALAAAGAAAAAS 21 (40)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 378876788888888773
No 28
>PF12714 TILa: TILa domain
Probab=26.20 E-value=1.3e+02 Score=19.56 Aligned_cols=46 Identities=22% Similarity=0.550 Sum_probs=29.1
Q ss_pred ee-ecCCCeeecCCceeccCCCcc-ceeeccCccCccceeEecccCCCCCCCCCCeee
Q psy10433 45 CF-ASTKCTTVEVGQAWELAPFCG-RSTCVKAEEDNRLLELVEDCGPLPKANPKCKLS 100 (152)
Q Consensus 45 Cy-~~~~~~~l~~Ges~~~~p~C~-r~tC~~~~~~~~~~l~I~~CG~~~l~~p~Ckl~ 100 (152)
|+ +.+ .-+++|++|-..+ |. +=+|.. +..++=...+|++ ...|.+.
T Consensus 2 C~d~~G--~yy~~Ge~~~~~~-C~~~C~C~~---~g~v~C~~~~C~~----~e~C~~~ 49 (56)
T PF12714_consen 2 CTDYNG--RYYPPGESWWTDD-CTQRCTCQP---NGQVQCQPSSCPP----GEVCQIQ 49 (56)
T ss_pred CcCcCC--EEECCCCEEeCCC-CCEeEEEcC---CCeEEEeCCCCCC----CCEeEeC
Confidence 56 555 8899999997665 54 446743 3444455667774 2557665
No 29
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=25.30 E-value=24 Score=27.35 Aligned_cols=19 Identities=21% Similarity=0.097 Sum_probs=0.0
Q ss_pred Ch-hHH-HHHHHHHHHHHhhh
Q psy10433 1 MK-VIA-FAFAFVLAVNAAEK 19 (152)
Q Consensus 1 m~-~~~-~~l~~~~~~~aa~~ 19 (152)
|| +++ ++|++.++||||..
T Consensus 1 MKK~ll~~~lllss~sfaA~~ 21 (126)
T PF09403_consen 1 MKKILLLGMLLLSSISFAATA 21 (126)
T ss_dssp ---------------------
T ss_pred ChHHHHHHHHHHHHHHHHccc
Confidence 55 333 56777788888866
No 30
>PRK09934 fimbrial-like adhesin protein SfmF; Provisional
Probab=24.33 E-value=1.1e+02 Score=23.87 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=36.3
Q ss_pred ChhHH-HHHHHHHHHHHhhhhhcCCCCcc-eeeeccCCCCCCCCCCeeecCC--CeeecCCceeccCCCccceeeccCcc
Q psy10433 1 MKVIA-FAFAFVLAVNAAEKNAAGDRPKT-YRRLIPADVLRDFPGMCFASTK--CTTVEVGQAWELAPFCGRSTCVKAEE 76 (152)
Q Consensus 1 m~~~~-~~l~~~~~~~aa~~~~~~~~~~~-y~~iipad~h~d~PGkCy~~~~--~~~l~~Ges~~~~p~C~r~tC~~~~~ 76 (152)
||-++ .+++++.++..+....+.++.+. |++.+-+.. |.+... ..+|..|+- ....+=.. .....
T Consensus 1 m~~~~~~~~~~~~~~~~~~a~~~~g~v~i~f~G~I~~~t-------C~i~~~~~~~~V~Lg~v-~~~~~~~~---g~~~~ 69 (171)
T PRK09934 1 MRRVFFACFCGLLWSPLSWAADPLGEINIELHGNVVDFT-------CTVNTADSDKTVDLGTW-PTKQLLNA---GDTTQ 69 (171)
T ss_pred ChhHHHHHHHHHhhChhhhhccCCCeEEEEEEEEEEeCc-------ceEcCCCcceEEECCcc-cHHHcccC---CCCCC
Confidence 66443 22332333333333233455554 567776664 988643 357777753 11111000 00011
Q ss_pred CccceeEecccCC
Q psy10433 77 DNRLLELVEDCGP 89 (152)
Q Consensus 77 ~~~~~l~I~~CG~ 89 (152)
...|.|...+|+.
T Consensus 70 ~~~F~I~L~~C~~ 82 (171)
T PRK09934 70 PVPFSLKLEGCPP 82 (171)
T ss_pred CEeEEEEEcCCCC
Confidence 3566677777863
No 31
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=24.25 E-value=68 Score=23.68 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=8.5
Q ss_pred ChhHHHHHHHHHHHH
Q psy10433 1 MKVIAFAFAFVLAVN 15 (152)
Q Consensus 1 m~~~~~~l~~~~~~~ 15 (152)
||+|+++|+++.+.+
T Consensus 1 m~~~~~vll~ll~~l 15 (105)
T PRK00888 1 MRLLTLLLLALLVWL 15 (105)
T ss_pred CcHHHHHHHHHHHHH
Confidence 888774444444343
No 32
>smart00817 Amelin Ameloblastin precursor (Amelin). This family consists of several mammalian Ameloblastin precursor (Amelin) proteins. Matrix proteins of tooth enamel consist mainly of amelogenin but also of non-amelogenin proteins, which, although their volumetric percentage is low, have an important role in enamel mineralisation. One of the non-amelogenin proteins is ameloblastin, also known as amelin and sheathlin. Ameloblastin (AMBN) is one of the enamel sheath proteins which is though to have a role in determining the prismatic structure of growing enamel crystals.
Probab=21.45 E-value=83 Score=28.91 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=23.3
Q ss_pred ChhHHHHHHHHHHHHHhhhhhcCCCCcceeeeccCCC-CCCCCCCeeec
Q psy10433 1 MKVIAFAFAFVLAVNAAEKNAAGDRPKTYRRLIPADV-LRDFPGMCFAS 48 (152)
Q Consensus 1 m~~~~~~l~~~~~~~aa~~~~~~~~~~~y~~iipad~-h~d~PGkCy~~ 48 (152)
||.+++++++++.+|| +|.-. |+-+||.=-++
T Consensus 1 M~~~iL~~cLl~~afA----------------~Pl~Pq~pg~pG~~s~S 33 (411)
T smart00817 1 MKDLALVLCLLKTSFA----------------VPAFPQQPGTPGMASLS 33 (411)
T ss_pred CcchhHHHHHHhhhhc----------------cccCCCCCCCCceeeee
Confidence 8888899999999994 34344 66788855444
No 33
>PRK11505 hypothetical protein; Provisional
Probab=21.31 E-value=84 Score=24.00 Aligned_cols=17 Identities=18% Similarity=0.075 Sum_probs=12.3
Q ss_pred ChhHHHHHHHHHHHHHh
Q psy10433 1 MKVIAFAFAFVLAVNAA 17 (152)
Q Consensus 1 m~~~~~~l~~~~~~~aa 17 (152)
||+.+++.+++|+.|+.
T Consensus 1 mk~~~l~~ll~g~~~~~ 17 (106)
T PRK11505 1 MKITLLVTLLFGLVFLT 17 (106)
T ss_pred CchHHHHHHHHHHHHhh
Confidence 78777666777777764
No 34
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.26 E-value=77 Score=26.22 Aligned_cols=19 Identities=21% Similarity=0.273 Sum_probs=15.4
Q ss_pred ChhHHHHHHHHHHHHHhhh
Q psy10433 1 MKVIAFAFAFVLAVNAAEK 19 (152)
Q Consensus 1 m~~~~~~l~~~~~~~aa~~ 19 (152)
||+|+++|+++++.+.|..
T Consensus 2 mRvl~i~Lliis~fl~a~~ 20 (182)
T COG2143 2 MRVLLIVLLIISLFLSACK 20 (182)
T ss_pred cchHHHHHHHHHHHHHHHh
Confidence 7888888888888887776
No 35
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=21.16 E-value=86 Score=23.66 Aligned_cols=7 Identities=29% Similarity=0.819 Sum_probs=4.1
Q ss_pred CCCCeee
Q psy10433 94 NPKCKLS 100 (152)
Q Consensus 94 ~p~Ckl~ 100 (152)
..+|+..
T Consensus 90 ~~~C~~~ 96 (162)
T PF12276_consen 90 NQDCTYT 96 (162)
T ss_pred CCCCCEe
Confidence 4666664
No 36
>PF05436 MF_alpha_N: Mating factor alpha precursor N-terminus; InterPro: IPR008675 This entry contains the N-terminal regions of the Saccharomyces mating factor alpha precursor protein. All proteins in this family contain one or more copies of IPR006742 from INTERPRO further toward their C terminus.; GO: 0007618 mating, 0005576 extracellular region
Probab=20.52 E-value=1.1e+02 Score=22.55 Aligned_cols=15 Identities=33% Similarity=0.233 Sum_probs=9.3
Q ss_pred ChhHHHHHHHHHHHH
Q psy10433 1 MKVIAFAFAFVLAVN 15 (152)
Q Consensus 1 m~~~~~~l~~~~~~~ 15 (152)
|||..++.+++.++.
T Consensus 1 MKf~siLsa~ala~~ 15 (86)
T PF05436_consen 1 MKFSSILSAAALASS 15 (86)
T ss_pred CchHHHHHHHHHHHH
Confidence 998875555544444
No 37
>PF04467 DUF483: Protein of unknown function (DUF483); InterPro: IPR007556 This is a family of uncharacterised prokaryotic proteins.
Probab=20.01 E-value=28 Score=27.38 Aligned_cols=12 Identities=42% Similarity=1.060 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCc
Q psy10433 104 NKTAPFPDCCPT 115 (152)
Q Consensus 104 D~t~pYP~CCPk 115 (152)
-...+||+||-+
T Consensus 42 GklL~YPdCCv~ 53 (128)
T PF04467_consen 42 GKLLGYPDCCVK 53 (128)
T ss_pred hccCCCcHHHHH
Confidence 467899999988
Done!