Query psy10433
Match_columns 152
No_of_seqs 92 out of 94
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 17:48:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u5m_A Cartilage, alpha 1 type 92.0 0.41 1.4E-05 32.1 5.8 62 42-121 7-68 (73)
2 1xhh_A Beta-microseminoprotein 35.7 43 0.0015 23.7 3.9 56 33-100 5-64 (91)
3 1o9a_A Fibronectin; cell adhes 34.4 18 0.00061 25.9 1.7 32 40-71 45-76 (93)
4 1qk7_A Selenocosmia huwena lec 27.1 25 0.00085 20.3 1.2 14 110-123 11-24 (32)
5 1qk6_A Huwentoxin-I; spider, c 18.6 45 0.0015 19.2 1.2 13 110-122 14-26 (33)
6 3ejh_A Fibronectin; fibronecti 17.9 80 0.0027 22.5 2.5 23 43-65 44-66 (93)
7 1nix_A Hainantoxin-I; inhibito 16.9 45 0.0016 19.4 0.9 13 110-122 14-26 (34)
8 3bx4_B Aggretin beta chain; to 16.6 52 0.0018 22.6 1.3 9 41-49 32-40 (146)
9 1emx_A HPTX2, heteropodatoxin 16.4 54 0.0018 18.6 1.1 10 110-119 14-23 (30)
10 2wh9_A GXTX-1E, GXTX1E, GUANGX 13.9 62 0.0021 19.0 1.0 14 110-123 16-29 (36)
No 1
>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2
Probab=92.01 E-value=0.41 Score=32.05 Aligned_cols=62 Identities=23% Similarity=0.543 Sum_probs=39.2
Q ss_pred CCCeeecCCCeeecCCceeccCCCccceeeccCccCccceeEecccCCCCCCCCCCeeeccCCCCCCCCCCCCccccCCC
Q psy10433 42 PGMCFASTKCTTVEVGQAWELAPFCGRSTCVKAEEDNRLLELVEDCGPLPKANPKCKLSEKTNKTAPFPDCCPTFECEPG 121 (152)
Q Consensus 42 PGkCy~~~~~~~l~~Ges~~~~p~C~r~tC~~~~~~~~~~l~I~~CG~~~l~~p~Ckl~e~~D~t~pYP~CCPk~~C~~~ 121 (152)
++.|++.+ .++..|++|++ +.|..=+|... ...=....|..+ ..|.- ...+-=+||| +|..+
T Consensus 7 ~~~C~~~G--~~y~~ge~W~~-d~C~~C~C~~G----~v~C~~~~Cp~~----~~C~~-----p~~~~GeCCP--vC~~~ 68 (73)
T 1u5m_A 7 AGSCVQDG--QRYNDKDVWKP-EPCRICVCDTG----TVLCDDIICEDV----KDCLS-----PEIPFGECCP--ICPAD 68 (73)
T ss_dssp CSCEESSS--CEECSSCEECS-CSSEEEEEETT----EEEEEECCCSCC----SSCSC-----CCCCSSCSCC--SCCSS
T ss_pred CCCeeECC--EEEcCCCEECC-cCcCceECCCC----cEEeccccCCCc----cCCCC-----CcccCCCcCC--CCCCc
Confidence 56799987 99999999986 56998888432 212233455542 15532 2223346999 77643
No 2
>1xhh_A Beta-microseminoprotein; beta srands, novel fold, prostatic secretory protein, solution structure, Na+, K+ ATPase inhibitor, unknown function; NMR {Sus scrofa} PDB: 2iz4_A
Probab=35.66 E-value=43 Score=23.73 Aligned_cols=56 Identities=21% Similarity=0.501 Sum_probs=33.5
Q ss_pred ccCCCCCCCCCCeeecCCCeeecCCceeccCCCccceeeccCccCccceeEecccCCCCCC----CCCCeee
Q psy10433 33 IPADVLRDFPGMCFASTKCTTVEVGQAWELAPFCGRSTCVKAEEDNRLLELVEDCGPLPKA----NPKCKLS 100 (152)
Q Consensus 33 ipad~h~d~PGkCy~~~~~~~l~~Ges~~~~p~C~r~tC~~~~~~~~~~l~I~~CG~~~l~----~p~Ckl~ 100 (152)
+|....+ |..|.+-. +.....|.+|+ ...|.+=+|.. + .+.=|..+..| .++|+.+
T Consensus 5 ~~~~~~~--~~~C~D~~-G~kh~l~s~W~-T~dC~~C~C~~-----~---Gi~CC~~~~~Pv~yd~~~C~~v 64 (91)
T 1xhh_A 5 IPNQSLK--PNECQDLK-GVSHPLNSVWK-TKDCEECTCGQ-----D---AISCCNTAAIPTGYDTNKCQKI 64 (91)
T ss_dssp EECCCSS--TTEEEETT-TEEEECCCCEE-CSSSEEEEECS-----S---EEEEEECSCEEESCCCSSEEEE
T ss_pred cccccCC--CCCCCcCC-CcEEeCCCeEC-CCCceEeEecC-----C---CcEeecCccccCcCCcccceEE
Confidence 3444433 34599522 48888999997 55799988842 2 44555554332 2466653
No 3
>1o9a_A Fibronectin; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1qgb_A
Probab=34.37 E-value=18 Score=25.93 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=22.8
Q ss_pred CCCCCeeecCCCeeecCCceeccCCCccceee
Q psy10433 40 DFPGMCFASTKCTTVEVGQAWELAPFCGRSTC 71 (152)
Q Consensus 40 d~PGkCy~~~~~~~l~~Ges~~~~p~C~r~tC 71 (152)
.....||+..+.+....|++|+.+-.=..++|
T Consensus 45 ~aee~C~Dk~~G~~Y~VGetwer~~~g~~~~C 76 (93)
T 1o9a_A 45 EAEETCFDKYTGNTYRVGDTYERPKDSMIWDC 76 (93)
T ss_dssp CSSCEEEETTTTEEEETTCBCCEEETTEEECC
T ss_pred CcccccccCCCccEeecCCeEEeccCCeEEEE
Confidence 34467999887899999999975544233333
No 4
>1qk7_A Selenocosmia huwena lectin-I; SHL-I, cystine knot; NMR {Selenocosmia huwena} SCOP: g.3.6.2
Probab=27.06 E-value=25 Score=20.28 Aligned_cols=14 Identities=29% Similarity=0.833 Sum_probs=11.3
Q ss_pred CCCCCccccCCCce
Q psy10433 110 PDCCPTFECEPGVK 123 (152)
Q Consensus 110 P~CCPk~~C~~~~~ 123 (152)
++||+.+.|...-+
T Consensus 11 ~~CC~~~~Cs~~~k 24 (32)
T 1qk7_A 11 NGCCSGYVCSRTWK 24 (32)
T ss_dssp CCCCTTEEECSSSC
T ss_pred CCcCCCceeCCCCC
Confidence 68999999986543
No 5
>1qk6_A Huwentoxin-I; spider, cystine knot; NMR {Selenocosmia huwena} SCOP: g.3.6.2
Probab=18.65 E-value=45 Score=19.22 Aligned_cols=13 Identities=31% Similarity=0.915 Sum_probs=10.7
Q ss_pred CCCCCccccCCCc
Q psy10433 110 PDCCPTFECEPGV 122 (152)
Q Consensus 110 P~CCPk~~C~~~~ 122 (152)
.+||+.+.|...-
T Consensus 14 ~~CC~~l~Cs~~~ 26 (33)
T 1qk6_A 14 NECCPNRVCSDKH 26 (33)
T ss_dssp TCSCSSEEECSSS
T ss_pred CCcCCCceeCCCC
Confidence 5899999998654
No 6
>3ejh_A Fibronectin; fibronectin, protein complex, collagenase site, AC phase, cell adhesion, disease mutation; HET: NAG; 2.10A {Homo sapiens} PDB: 3gxe_B*
Probab=17.85 E-value=80 Score=22.52 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.0
Q ss_pred CCeeecCCCeeecCCceeccCCC
Q psy10433 43 GMCFASTKCTTVEVGQAWELAPF 65 (152)
Q Consensus 43 GkCy~~~~~~~l~~Ges~~~~p~ 65 (152)
.+|+++...+....|++|+....
T Consensus 44 d~C~D~~~g~~Y~IGetW~k~~~ 66 (93)
T 3ejh_A 44 DQCQDSETGTFYQIGDSWEKYVH 66 (93)
T ss_dssp SEEECTTTCCEEETTCEEEECCT
T ss_pred ccCCccCCCcEeecCCeEeeccC
Confidence 37999877899999999987543
No 7
>1nix_A Hainantoxin-I; inhibitor cystine knot motif; NMR {Ornithoctonus hainana} SCOP: g.3.6.2 PDB: 2jtb_A
Probab=16.85 E-value=45 Score=19.40 Aligned_cols=13 Identities=23% Similarity=0.976 Sum_probs=10.5
Q ss_pred CCCCCccccCCCc
Q psy10433 110 PDCCPTFECEPGV 122 (152)
Q Consensus 110 P~CCPk~~C~~~~ 122 (152)
++||+.+.|...-
T Consensus 14 ~~CC~~~~Cs~~~ 26 (34)
T 1nix_A 14 NECCSGYACNSRD 26 (34)
T ss_dssp TCBCTTEEECSSS
T ss_pred CCcCCCCeeCCCC
Confidence 5799999998653
No 8
>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB: 2vrp_B
Probab=16.56 E-value=52 Score=22.55 Aligned_cols=9 Identities=22% Similarity=0.899 Sum_probs=6.3
Q ss_pred CCCCeeecC
Q psy10433 41 FPGMCFAST 49 (152)
Q Consensus 41 ~PGkCy~~~ 49 (152)
|.|+||.-.
T Consensus 32 ~~~~CY~~~ 40 (146)
T 3bx4_B 32 YEGHCYKPF 40 (146)
T ss_dssp ETTEEEEEE
T ss_pred eCCEEEEEE
Confidence 457899764
No 9
>1emx_A HPTX2, heteropodatoxin 2; NMR {Heteropoda venatoria} SCOP: g.3.6.2
Probab=16.39 E-value=54 Score=18.62 Aligned_cols=10 Identities=40% Similarity=1.381 Sum_probs=9.2
Q ss_pred CCCCCccccC
Q psy10433 110 PDCCPTFECE 119 (152)
Q Consensus 110 P~CCPk~~C~ 119 (152)
++||+.+.|.
T Consensus 14 ~~CC~~~~Cs 23 (30)
T 1emx_A 14 ADCCEGYVCR 23 (30)
T ss_dssp TCCCTTBCCS
T ss_pred CccCCCCccc
Confidence 7899999997
No 10
>2wh9_A GXTX-1E, GXTX1E, GUANGXITOXIN-1EGXTX-1E; membrane protein inhibitor, potassium channel inhibitor, ionic channel inhibitor, knottin; NMR {Plesiophrictus guangxiensis}
Probab=13.93 E-value=62 Score=19.03 Aligned_cols=14 Identities=43% Similarity=1.324 Sum_probs=0.0
Q ss_pred CCCCCccccCCCce
Q psy10433 110 PDCCPTFECEPGVK 123 (152)
Q Consensus 110 P~CCPk~~C~~~~~ 123 (152)
.+||+.+.|...-+
T Consensus 16 ~~CC~~l~Cs~~~~ 29 (36)
T 2wh9_A 16 PACCPKYVCSPKWG 29 (36)
T ss_dssp CCBCSSCEECSSSS
T ss_pred CCcCCCCeeCCCCC
Done!