RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10433
(152 letters)
>gnl|CDD|237542 PRK13882, PRK13882, conjugal transfer protein TrbP; Provisional.
Length = 232
Score = 30.8 bits (70), Expect = 0.18
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 4 IAFA-FAFVLAVNAAEKNA--AGDRPKTYRRL 32
+A F FVLA N A A GD +T +RL
Sbjct: 45 VALPLFVFVLAYNLARPGALERGDYGRTMKRL 76
>gnl|CDD|236544 PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase;
Reviewed.
Length = 830
Score = 29.7 bits (67), Expect = 0.62
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 28 TYRRL-IPADVLRDFPGMCFASTKCTTVEVGQAWE 61
T+ +L +P D L P M + T +EV QA++
Sbjct: 588 TWIKLGVPKDQLNPVPAMLLGALNLTPIEVAQAFQ 622
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 28.9 bits (65), Expect = 0.93
Identities = 16/70 (22%), Positives = 20/70 (28%), Gaps = 10/70 (14%)
Query: 82 ELVEDCGPLPKANPKCKLSEKTNKTAPFPDCCPTFECEPGVKLEYPEIPAAPEGEAKKPA 141
L D P P S +T A P E P A + K+
Sbjct: 312 HLSSDSSPSPPDTSDSDPSTETPPPASLSHSPPAA----------FERPLALSPKRKREG 361
Query: 142 AKSAPKPKAK 151
K K K+K
Sbjct: 362 DKKQKKKKSK 371
>gnl|CDD|173288 PRK14827, PRK14827, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 296
Score = 28.8 bits (64), Expect = 0.96
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 108 PFPDCCPTFECEPGVKLEYPEIPAAPEGEAKKP----AAKSAPKPKA 150
P PD PTF + + +PE+P AP G +P + +AP+ A
Sbjct: 18 PAPDDYPTFPDKSTWPVVFPELPPAPYGGPCRPPQHTSKAAAPRIPA 64
>gnl|CDD|223020 PHA03246, PHA03246, large tegument protein UL36; Provisional.
Length = 3095
Score = 29.2 bits (65), Expect = 0.98
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 18 EKNAAGDRPKTYRRLIPADVL 38
+K AA R + RL PADV+
Sbjct: 2145 KKFAANGRRRQVVRLDPADVM 2165
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 29.2 bits (65), Expect = 1.0
Identities = 18/90 (20%), Positives = 25/90 (27%), Gaps = 4/90 (4%)
Query: 63 APFCGRSTCVKAEEDNRLLELVEDCGPLPKANPKCKLSEKTNKTAPFPDCCPTFECEPGV 122
+P G ++A ED + VE L + + E P
Sbjct: 174 SPVAGTLLEIRAPED----DTVEVGTVLAIIGDANAAPAEPAEEEAPAPSEAGSEPAPDP 229
Query: 123 KLEYPEIPAAPEGEAKKPAAKSAPKPKAKA 152
P P A PA +AP A
Sbjct: 230 AARAPHAAPDPPAPAPAPAKTAAPAAAAPV 259
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 27.9 bits (63), Expect = 2.6
Identities = 14/65 (21%), Positives = 17/65 (26%)
Query: 88 GPLPKANPKCKLSEKTNKTAPFPDCCPTFECEPGVKLEYPEIPAAPEGEAKKPAAKSAPK 147
P A + + A P P P P A AA +AP
Sbjct: 41 TAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPP 100
Query: 148 PKAKA 152
A A
Sbjct: 101 AAAAA 105
>gnl|CDD|233270 TIGR01097, PhnE, phosphonate ABC transporter, permease protein
PhnE. Phosphonates are a class of compound analogous to
organic phosphates, but in which the C-O-P linkage is
replaced by a direct, stable C-P bond. Some bacteria can
utilize phosphonates as a source of phosphorus. This
family consists of permease proteins of known or
predicted phosphonate ABC transporters. Often this
protein is found as a duplicated pair, occasionally as a
fused pair. Certain "second" copies score in between the
trusted and noise cutoff and should be considered true
hits (by context) [Transport and binding proteins,
Anions].
Length = 250
Score = 27.5 bits (62), Expect = 2.8
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 3 VIAFAFAFVLAVNAAEKNAAGDRP--KTYRRLIPADVLRDFPGMCFA 47
V+A A LA+ AA N R L+ + LR P + +A
Sbjct: 72 VLAAVLAVPLALLAAR-NITPSPWLYGLARLLL--NFLRAIPELVWA 115
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 27.7 bits (62), Expect = 3.0
Identities = 22/105 (20%), Positives = 31/105 (29%), Gaps = 16/105 (15%)
Query: 64 PFCGRSTCVKAEEDNRLL--ELVEDCG---PLPKAN---------PKC--KLSEKTNKTA 107
P CG +K + L C PLP+ P+C L
Sbjct: 692 PKCGGELAIKQLKYGSFLGCTNYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRVKGGFG 751
Query: 108 PFPDCCPTFECEPGVKLEYPEIPAAPEGEAKKPAAKSAPKPKAKA 152
CC +C K + + + K AK+A K K
Sbjct: 752 DELGCCNNPKCNYTEKQKKEKESKSELEALKGVGAKTAEKLKDAG 796
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 26.5 bits (59), Expect = 6.4
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 127 PEIPAAPEGEAKKPAAKSAPKPKAKA 152
P++P AP A+ A A PKA A
Sbjct: 535 PDVPPAPT-PAEPAAPVVAAAPKAAA 559
>gnl|CDD|220083 pfam08973, TM1506, Domain of unknown function (DUF1893). A member
of the deaminase fold that binds an unknown ligand in
the crystal structure. The protein is ADP-ribosylated at
a conserved aspartate. Contextual analysis suggests that
the domain is likely to bind NAD or ADP ribose either to
sense redox states or to function as a regulatory ADP
ribosyltransferase.
Length = 134
Score = 25.8 bits (57), Expect = 8.2
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 28 TYRRLIPADVLRDFPGMCFASTKCTTVEVGQA 59
Y +L+P RD GMC T VE +
Sbjct: 92 EYVKLVPFIWNRDGTGMCPLETLVLEVEDPEE 123
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 26.1 bits (57), Expect = 9.5
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 130 PAAPEGEAKKPAAKSAPKPKAKA 152
PAAP K PAA S P PK A
Sbjct: 188 PAAPVASTKAPAATSTPAPKETA 210
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.418
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,401,924
Number of extensions: 613507
Number of successful extensions: 791
Number of sequences better than 10.0: 1
Number of HSP's gapped: 772
Number of HSP's successfully gapped: 36
Length of query: 152
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 64
Effective length of database: 7,034,450
Effective search space: 450204800
Effective search space used: 450204800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)