RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10433
(152 letters)
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional
adaptor protein2, transcriptional activation, MYB
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.4.1.1
Length = 60
Score = 28.9 bits (65), Expect = 0.14
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 74 AEEDNRLLELVEDCGP 89
A+E+ LLE V DCG
Sbjct: 13 AQEEMALLEAVMDCGF 28
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics,
unknown function, NPPSFA; NMR {Mus musculus}
Length = 60
Score = 27.6 bits (62), Expect = 0.42
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 74 AEEDNRLLELVEDCGP 89
EED +L LV G
Sbjct: 13 HEEDEQLRALVRQFGQ 28
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription
regulation, DNA binding, ION bindi proto-oncogene,
nuclear protein, activator; 1.6A {Mus musculus} SCOP:
a.4.1.3 PDB: 1mbe_A 1mbf_A
Length = 52
Score = 27.2 bits (61), Expect = 0.51
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 74 AEEDNRLLELVEDCGP 89
EED +L +LVE G
Sbjct: 8 REEDEKLKKLVEQNGT 23
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics,
NPPSFA; NMR {Schizosaccharomyces pombe}
Length = 58
Score = 26.6 bits (59), Expect = 0.80
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 74 AEEDNRLLELVEDCG 88
A+E+ L++ E G
Sbjct: 14 ADEELLLIDACETLG 28
>1q5x_A Regulator of RNAse E activity A; 3-layer sandwich, alpha-beta
structure, parallel beta sheet, antiparallel beta
sheet, hydrolase inhibitor; 2.00A {Escherichia coli}
SCOP: c.8.7.1
Length = 161
Score = 28.0 bits (63), Expect = 0.88
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 63 APFCGRSTCVKAEEDNRLL-ELVEDCGP 89
A F G+ VK EDN LL +L+E G
Sbjct: 30 ASFGGQIITVKCFEDNGLLYDLLEQNGR 57
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc
peptidase, peptidase family M20 structural genomics;
2.31A {Bacteroides thetaiotaomicron vpi-5482}
Length = 356
Score = 28.3 bits (64), Expect = 0.93
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 53 TVEVGQAWELAPFCGRSTCVKAEEDNRL 80
TV+ W PF R EE+ +L
Sbjct: 77 TVKPVNGWRKDPFTPR------EENGKL 98
>2pcn_A S-adenosylmethionine:2-demethylmenaquinone methyltransferase;
beta, beta alpha domain; 1.90A {Geobacillus
kaustophilus}
Length = 161
Score = 27.9 bits (63), Expect = 0.98
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 65 FCGRSTCVKAEEDNRLL-ELVEDCGP 89
F G V EDN L+ E +E P
Sbjct: 30 FSGPIATVDVFEDNVLVREALETVPP 55
>1vi4_A Regulator of ribonuclease acivity A protein 1; structural
genomics, unknown function; 1.87A {Vibrio cholerae}
SCOP: c.8.7.1
Length = 174
Score = 28.0 bits (63), Expect = 1.1
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 63 APFCGRSTCVKAEEDNRLL-ELVEDCGP 89
+ F G V+ DN + +++ G
Sbjct: 33 SAFWGEIVTVRCYHDNSKVRDVLSQNGK 60
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces
cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A*
1how_A 2jd5_A
Length = 373
Score = 28.1 bits (63), Expect = 1.1
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 48 STKCTTVEVGQAWELAPFCGRSTCVKAEEDNRLLELVEDCGPLPKANPKCKLSEKTNKTA 107
ST C E+ L F ++D+ + +++E G LP L T
Sbjct: 220 STACLIFELITGDFL--FEPDEGHSYTKDDDHIAQIIELLGELPS-----YLLRNGKYTR 272
Query: 108 PF 109
F
Sbjct: 273 TF 274
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein;
NMR {Trichomonas vaginalis} PDB: 2kdz_A
Length = 107
Score = 27.1 bits (61), Expect = 1.1
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 74 AEEDNRLLELVEDCGP 89
EED +L +LV G
Sbjct: 6 EEEDLKLQQLVMRYGA 21
>1gvd_A MYB proto-oncogene protein; transcription, transcription
regulation, C-MYB, DNA binding, ION binding, nuclear
protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A
1mbg_A 1mbh_A
Length = 52
Score = 25.9 bits (58), Expect = 1.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 74 AEEDNRLLELVEDCGP 89
EED RL++LV+ GP
Sbjct: 8 KEEDQRLIKLVQKYGP 23
>3c8o_A Regulator of ribonuclease activity A; RRAA, PAO1, RNAse E
regulater, hydrolase regulator; HET: PGE PG4; 1.90A
{Pseudomonas aeruginosa}
Length = 162
Score = 27.5 bits (62), Expect = 1.2
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 63 APFCGRSTCVKAEEDNRLL-ELVEDCGP 89
F G +K EDN L+ E V+ G
Sbjct: 30 DSFGGEIVTIKCFEDNSLVKEQVDKDGK 57
>1nxj_A Probable S-adenosylmethionine:2- demethylmenaquinone
methyltransferase; beta/BETA/alpha domain, structural
genomics, PSI; HET: TLA; 1.90A {Mycobacterium
tuberculosis} SCOP: c.8.7.1
Length = 183
Score = 27.6 bits (62), Expect = 1.3
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 65 FCGRSTCVKAEEDNRLL-ELVEDCGP 89
F G + V+ +DN LL ++
Sbjct: 61 FAGPISTVRCFQDNALLKSVLSQPSA 86
>1j3l_A Demethylmenaquinone methyltransferase; vitamine K2, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.30A {Thermus thermophilus} SCOP:
c.8.7.1
Length = 164
Score = 27.5 bits (62), Expect = 1.3
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 65 FCGRSTCVKAEEDNRLL-ELVEDCGP 89
F GR ++ EDN L+ +++E+ G
Sbjct: 31 FAGRVRTLRVFEDNALVRKVLEEEGA 56
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus
musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Length = 159
Score = 26.8 bits (60), Expect = 2.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 74 AEEDNRLLELVEDCGP 89
EED R+++LV+ GP
Sbjct: 63 KEEDQRVIKLVQKYGP 78
Score = 26.1 bits (58), Expect = 4.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 74 AEEDNRLLELVEDCGP 89
EED +L +LVE G
Sbjct: 11 REEDEKLKKLVEQNGT 26
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell
cycle, DNA binding, spliceosome, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 24.9 bits (55), Expect = 3.9
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 73 KAEEDNRLLELVEDCGP 89
+ ED L V G
Sbjct: 13 RNTEDEILKAAVMKYGK 29
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein
structure initiative, PSI-2, structural midwest center
for structural genomics, MCSG; HET: MSE PG4; 1.65A
{Bacillus anthracis}
Length = 278
Score = 26.5 bits (59), Expect = 4.0
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 66 CGRSTCVKAEEDNRLLELVED 86
CG S K + + + E ++D
Sbjct: 60 CGNSDSAKNDSEYSMTETIKD 80
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A
{Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Length = 128
Score = 26.0 bits (58), Expect = 4.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 74 AEEDNRLLELVEDCGP 89
EED R++E V+ GP
Sbjct: 32 KEEDQRVIEHVQKYGP 47
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein,
homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens}
SCOP: a.4.1.4 PDB: 1ba5_A
Length = 53
Score = 24.6 bits (54), Expect = 4.8
Identities = 6/16 (37%), Positives = 6/16 (37%)
Query: 74 AEEDNRLLELVEDCGP 89
EED L V G
Sbjct: 7 WEEDKNLRSGVRKYGE 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding,
ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3
PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Length = 105
Score = 25.2 bits (56), Expect = 5.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 74 AEEDNRLLELVEDCGP 89
EED R+++LV+ GP
Sbjct: 9 KEEDQRVIKLVQKYGP 24
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus;
2.90A {Trichomonas vaginalis}
Length = 131
Score = 25.7 bits (57), Expect = 5.2
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 74 AEEDNRLLELVEDCGP 89
ED+ + E V++ GP
Sbjct: 7 EAEDDLIREYVKENGP 22
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding
PR transcription factor; 2.00A {Trichomonas vaginalis}
PDB: 3osf_A
Length = 126
Score = 25.3 bits (56), Expect = 5.7
Identities = 6/16 (37%), Positives = 6/16 (37%)
Query: 74 AEEDNRLLELVEDCGP 89
EED L V G
Sbjct: 16 PEEDEMLKRAVAQHGS 31
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A
{Xanthomonas campestris} PDB: 2f8h_A
Length = 369
Score = 25.7 bits (57), Expect = 6.8
Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 6/28 (21%)
Query: 53 TVEVGQAWELAPFCGRSTCVKAEEDNRL 80
TV W P R ++R+
Sbjct: 78 TVPDSPHWSADPHVMR------RTEDRV 99
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A
{Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 25.7 bits (57), Expect = 7.1
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 80 LLELVEDCGPLPKANPKCKLSEKTNKTAPFP 110
E VE G +P C + K+ P
Sbjct: 521 FAEGVEKVGRIPTKALACGGTAKSLINNPKN 551
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 25.6 bits (57), Expect = 7.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 108 PFPDCCPTFECEPGVKLEYPEIPAAPEGEAKKPAAKSAPKPKAK 151
P PD PTF + +PE+PAAP G +P ++ +
Sbjct: 6 PAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPR 49
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase,
alternative splicing, ATP-binding, chromosome partition,
differentiation, mRNA processing; 1.73A {Homo sapiens}
PDB: 1wbp_A* 3beg_A* 2x7g_A*
Length = 397
Score = 25.3 bits (55), Expect = 9.5
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 59 AWELA----PFCGRSTCVKAEEDNRLLELVEDCGPLPK 92
A+ELA F S +++ + ++E G +P+
Sbjct: 283 AFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPR 320
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles,
endocytosis, SELF- assembly, alpha-alpha superhelix;
2.60A {Bos taurus} SCOP: a.118.1.3
Length = 449
Score = 25.2 bits (55), Expect = 9.5
Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 27/106 (25%)
Query: 10 FVLAVNAAEKNAAGDR----------------PKTYRRLIPADV-LRDFPGMCFASTKCT 52
F+ N A GDR + RL V L ++ + K
Sbjct: 116 FINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 175
Query: 53 TVEV----------GQAWELAPFCGRSTCVKAEEDNRLLELVEDCG 88
+ G+ + LA CG V A+E L+ +D G
Sbjct: 176 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRG 221
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.418
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,257,836
Number of extensions: 121270
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 30
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)