RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10433
         (152 letters)



>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L,
          isoform b {Human (Homo sapiens) [TaxId: 9606]}
          Length = 47

 Score = 26.8 bits (59), Expect = 0.20
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 74 AEEDNRLLELVEDCGP 89
          A+E+  LLE V DCG 
Sbjct: 6  AQEEMALLEAVMDCGF 21


>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco
           (Nicotiana tabacum) [TaxId: 4097]}
          Length = 83

 Score = 26.2 bits (57), Expect = 0.81
 Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 1/35 (2%)

Query: 74  AEEDNRLLELVEDCGPLPKAN-PKCKLSEKTNKTA 107
             E   L+E VE  G     +          ++T 
Sbjct: 5   VAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTY 39


>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 50

 Score = 25.1 bits (55), Expect = 0.90
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 74 AEEDNRLLELVEDCGP 89
           EED +L +LVE  G 
Sbjct: 6  REEDEKLKKLVEQNGT 21


>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric
          protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 52

 Score = 25.2 bits (55), Expect = 0.93
 Identities = 6/16 (37%), Positives = 6/16 (37%)

Query: 74 AEEDNRLLELVEDCGP 89
           EED  L   V   G 
Sbjct: 7  WEEDKNLRSGVRKYGE 22


>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 52

 Score = 25.1 bits (55), Expect = 1.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 74 AEEDNRLLELVEDCGP 89
           EED RL++LV+  GP
Sbjct: 8  KEEDQRLIKLVQKYGP 23


>d1j3la_ c.8.7.1 (A:) Demethylmenaquinone methyltransferase
          {Thermus thermophilus [TaxId: 274]}
          Length = 164

 Score = 24.9 bits (54), Expect = 4.0
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 65 FCGRSTCVKAEEDNRLL-ELVEDCGP 89
          F GR   ++  EDN L+ +++E+ G 
Sbjct: 31 FAGRVRTLRVFEDNALVRKVLEEEGA 56


>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 65

 Score = 23.2 bits (50), Expect = 7.0
 Identities = 3/16 (18%), Positives = 6/16 (37%)

Query: 74 AEEDNRLLELVEDCGP 89
           EE    ++ +   G 
Sbjct: 10 TEEQLLAVQAIRKYGR 25


>d1nxja_ c.8.7.1 (A:) Hypothetical protein Rv3853 {Mycobacterium
          tuberculosis [TaxId: 1773]}
          Length = 156

 Score = 24.1 bits (52), Expect = 7.2
 Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)

Query: 65 FCGRSTCVKAEEDNRLL-ELVEDCGP 89
          F G  + V+  +DN LL  ++     
Sbjct: 34 FAGPISTVRCFQDNALLKSVLSQPSA 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.418 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 554,678
Number of extensions: 24304
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 13
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)