BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10434
(593 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FSU|A Chain A, 4-Sulfatase (Human)
Length = 492
Score = 331 bits (849), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 173/364 (47%), Positives = 231/364 (63%), Gaps = 15/364 (4%)
Query: 28 KKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYVQALCTPSRSALMTG 87
+ PH++ +LADDLGWNDV FHGS +I TP++DALA G++L+ +Y Q L TPSRS L+TG
Sbjct: 2 RPPHLVFLLADDLGWNDVGFHGS-RIRTPHLDALAAGGVLLDNYYTQPLXTPSRSQLLTG 60
Query: 88 KYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFREVYTPTFRG 147
+Y I G+QH +I +P +PL EKLLPQ LKEAGY TH +GKWHLG +R+ PT RG
Sbjct: 61 RYQIRTGLQHQIIWPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRG 120
Query: 148 FDSHYGYWQGLQDYYDHSCKATFEPYQ----GLDMRHNMQVDNKTIGIYSTDLYTEAAIN 203
FD+++GY G +DYY H + LD R +V +YST+++T+ AI
Sbjct: 121 FDTYFGYLLGSEDYYSHERCTLIDALNVTRCALDFRDGEEVATGYKNMYSTNIFTKRAIA 180
Query: 204 VIAEHNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPERRTYAGMVSRLDES 263
+I H KP+FLYLA +VH EP Q P+E + + I D R YAGMVS +DE+
Sbjct: 181 LITNHPPEKPLFLYLALQSVH-----EPLQVPEEYLKPYDFIQDKNRHHYAGMVSLMDEA 235
Query: 264 VGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLRGMKSTPWDGGMRGVAAI 323
VGNV AAL+ G+ N++ +F DNG + G+N PLRG K + W+GG+RGV +
Sbjct: 236 VGNVTAALKSSGLWNNTVFIFSTDNGGQTLA----GGNNWPLRGRKWSLWEGGVRGVGFV 291
Query: 324 WSPWLKQTQKVSSELFHISDWLPTLCAAAGIEINDTS-LDGVNQWDVLTKGAKTKRSEIL 382
SP LKQ + EL HISDWLPTL A N T LDG + W +++G+ + R E+L
Sbjct: 292 ASPLLKQKGVKNRELIHISDWLPTLVKLARGHTNGTKPLDGFDVWKTISEGSPSPRIELL 351
Query: 383 HNID 386
HNID
Sbjct: 352 HNID 355
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 505 LFNITDDPCEQNNLAESQTDLLKQLEDKLAIYKSTMVPPGNKPFDKRADPARWNNIWVPW 564
LF+I DP E+++L+ ++ +L +L Y VP D R DP + +W PW
Sbjct: 433 LFDIDRDPEERHDLSREYPHIVTKLLSRLQFYHKHSVPVYFPAQDPRCDP-KATGVWGPW 491
>pdb|4FDI|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDI|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDJ|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
pdb|4FDJ|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
Length = 502
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 180/376 (47%), Gaps = 25/376 (6%)
Query: 26 APKKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHY-VQALCTPSRSAL 84
AP+ P+I+++L DD+GW D+ +G TPN+D +A GL+ Y L +PSR+AL
Sbjct: 1 APQPPNILLLLMDDMGWGDLGVYGEPSRETPNLDRMAAEGLLFPNFYSANPLXSPSRAAL 60
Query: 85 MTGKYPIHIGM-------QHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFF 137
+TG+ PI G ++ + G+P +E+LLP+ LK+AGY + +GKWHLG
Sbjct: 61 LTGRLPIRNGFYTTNAHARNAYTPQEIVGGIPDSEQLLPELLKKAGYVSKIVGKWHLGH- 119
Query: 138 REVYTPTFRGFDSHYGYWQGLQDYYDHSCKATFEPYQGLDM----RHNMQVDNKTIGIYS 193
R + P GFD +G YD+ + Y+ +M ++ KT
Sbjct: 120 RPQFHPLKHGFDEWFGSPNCHFGPYDNKARPNIPVYRDWEMVGRYYEEFPINLKTGEANL 179
Query: 194 TDLYTEAAINVIAEHNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPERRTY 253
T +Y + A++ I + P FLY A A HA P FL S +R Y
Sbjct: 180 TQIYLQEALDFIKRQARHHPFFLYWAVDATHA---------PVYASKPFLGTS--QRGRY 228
Query: 254 AGMVSRLDESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLRGMKSTPW 313
V +D+S+G ++ L+ + +N+ V F +DNGA GSN P K T +
Sbjct: 229 GDAVREIDDSIGKILELLQDLHVADNTFVFFTSDNGAALISAPEQGGSNGPFLCGKQTTF 288
Query: 314 DGGMRGVAAIWSPWLKQTQKVSSELFHISDWLPTLCAAAGI-EINDTSLDGVNQWDVLTK 372
+GGMR A W P +VS +L I D T A AG+ +D ++DG+N L +
Sbjct: 289 EGGMREPALAWWPGHVTAGQVSHQLGSIMDLFTTSLALAGLTPPSDRAIDGLNLLPTLLQ 348
Query: 373 GAKTKRSEILHNIDNV 388
G R + D +
Sbjct: 349 GRLMDRPIFYYRGDTL 364
>pdb|1E2S|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69a
Length = 489
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/404 (30%), Positives = 189/404 (46%), Gaps = 30/404 (7%)
Query: 28 KKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYVQ-ALCTPSRSALMT 86
+ P+I++I ADDLG+ D+ +G TPN+D LA GL YV +L TPSR+AL+T
Sbjct: 1 RPPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLATPSRAALLT 60
Query: 87 GKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFRE-VYTPTF 145
G+ P+ +GM GV++ GLPL E + + L GY T GKWHLG E + P
Sbjct: 61 GRLPVRMGMYPGVLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPH 120
Query: 146 RGFDSHYG--YWQGLQDYYDHSCKATFEPYQG--------LDMRHNMQVDNKTIGIYSTD 195
+GF G Y + +C P G + + N+ V+ + + +
Sbjct: 121 QGFHRFLGIPYSHDQGPCQNLTCFPPATPCDGGCDQGLVPIPLLANLSVEAQPPWLPGLE 180
Query: 196 L-YTEAAINVIAE-HNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPERRTY 253
Y A +++A+ + +P FLY A H Y F F + S R +
Sbjct: 181 ARYMAFAHDLMADAQRQDRPFFLYYASHHTH----YPQFSG-----QSFAERSG--RGPF 229
Query: 254 AGMVSRLDESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLRGMKSTPW 313
+ LD +VG ++ A+ G+LE ++V+F ADNG + + S G + LR K T +
Sbjct: 230 GDSLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRM-SRGGCSGLLRCGKGTTY 288
Query: 314 DGGMRGVA-AIWSPWLKQTQKVSSELFHISDWLPTLCAAAGIEINDTSLDGVNQWDVLTK 372
+GG+R A A W + V+ EL D LPTL A AG + + +LDG + +L
Sbjct: 289 EGGVREPALAFWPGHI--APGVTHELASSLDLLPTLAALAGAPLPNVTLDGFDLSPLLLG 346
Query: 373 GAKTKRSEILHNIDNVDNPQKYYAALRVDDLKYVAGTDNNGQSD 416
K+ R + D + + A+R K T + SD
Sbjct: 347 TGKSPRQSLFFYPSYPDEVRGVF-AVRTGKYKAHFFTQGSAHSD 389
>pdb|1E3C|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s Soaked
In Synthetic Substrate
Length = 489
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/404 (30%), Positives = 189/404 (46%), Gaps = 30/404 (7%)
Query: 28 KKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYVQ-ALCTPSRSALMT 86
+ P+I++I ADDLG+ D+ +G TPN+D LA GL YV +L TPSR+AL+T
Sbjct: 1 RPPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLSTPSRAALLT 60
Query: 87 GKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFRE-VYTPTF 145
G+ P+ +GM GV++ GLPL E + + L GY T GKWHLG E + P
Sbjct: 61 GRLPVRMGMYPGVLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPH 120
Query: 146 RGFDSHYG--YWQGLQDYYDHSCKATFEPYQG--------LDMRHNMQVDNKTIGIYSTD 195
+GF G Y + +C P G + + N+ V+ + + +
Sbjct: 121 QGFHRFLGIPYSHDQGPCQNLTCFPPATPCDGGCDQGLVPIPLLANLSVEAQPPWLPGLE 180
Query: 196 L-YTEAAINVIAEHNKS-KPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPERRTY 253
Y A +++A+ + +P FLY A H Y F F + S R +
Sbjct: 181 ARYMAFAHDLMADAQREDRPFFLYYASHHTH----YPQFSG-----QSFAERSG--RGPF 229
Query: 254 AGMVSRLDESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLRGMKSTPW 313
+ LD +VG ++ A+ G+LE ++V+F ADNG + + S G + LR K T +
Sbjct: 230 GDSLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRM-SRGGCSGLLRCGKGTTY 288
Query: 314 DGGMRGVA-AIWSPWLKQTQKVSSELFHISDWLPTLCAAAGIEINDTSLDGVNQWDVLTK 372
+GG+R A A W + V+ EL D LPTL A AG + + +LDG + +L
Sbjct: 289 EGGVREPALAFWPGHI--APGVTHELASSLDLLPTLAALAGAPLPNVTLDGFDLSPLLLG 346
Query: 373 GAKTKRSEILHNIDNVDNPQKYYAALRVDDLKYVAGTDNNGQSD 416
K+ R + D + + A+R K T + SD
Sbjct: 347 TGKSPRQSLFFYPSYPDEVRGVF-AVRTGKYKAHFFTQGSAHSD 389
>pdb|1E1Z|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s
Length = 489
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/404 (30%), Positives = 189/404 (46%), Gaps = 30/404 (7%)
Query: 28 KKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYVQ-ALCTPSRSALMT 86
+ P+I++I ADDLG+ D+ +G TPN+D LA GL YV +L TPSR+AL+T
Sbjct: 1 RPPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLSTPSRAALLT 60
Query: 87 GKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFRE-VYTPTF 145
G+ P+ +GM GV++ GLPL E + + L GY T GKWHLG E + P
Sbjct: 61 GRLPVRMGMYPGVLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPH 120
Query: 146 RGFDSHYG--YWQGLQDYYDHSCKATFEPYQG--------LDMRHNMQVDNKTIGIYSTD 195
+GF G Y + +C P G + + N+ V+ + + +
Sbjct: 121 QGFHRFLGIPYSHDQGPCQNLTCFPPATPCDGGCDQGLVPIPLLANLSVEAQPPWLPGLE 180
Query: 196 L-YTEAAINVIAE-HNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPERRTY 253
Y A +++A+ + +P FLY A H Y F F + S R +
Sbjct: 181 ARYMAFAHDLMADAQRQDRPFFLYYASHHTH----YPQFSG-----QSFAERSG--RGPF 229
Query: 254 AGMVSRLDESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLRGMKSTPW 313
+ LD +VG ++ A+ G+LE ++V+F ADNG + + S G + LR K T +
Sbjct: 230 GDSLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRM-SRGGCSGLLRCGKGTTY 288
Query: 314 DGGMRGVA-AIWSPWLKQTQKVSSELFHISDWLPTLCAAAGIEINDTSLDGVNQWDVLTK 372
+GG+R A A W + V+ EL D LPTL A AG + + +LDG + +L
Sbjct: 289 EGGVREPALAFWPGHI--APGVTHELASSLDLLPTLAALAGAPLPNVTLDGFDLSPLLLG 346
Query: 373 GAKTKRSEILHNIDNVDNPQKYYAALRVDDLKYVAGTDNNGQSD 416
K+ R + D + + A+R K T + SD
Sbjct: 347 TGKSPRQSLFFYPSYPDEVRGVF-AVRTGKYKAHFFTQGSAHSD 389
>pdb|1E33|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant P426l
Length = 489
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/404 (30%), Positives = 189/404 (46%), Gaps = 30/404 (7%)
Query: 28 KKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYVQ-ALCTPSRSALMT 86
+ P+I++I ADDLG+ D+ +G TPN+D LA GL YV +L TPSR+AL+T
Sbjct: 1 RPPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLXTPSRAALLT 60
Query: 87 GKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFRE-VYTPTF 145
G+ P+ +GM GV++ GLPL E + + L GY T GKWHLG E + P
Sbjct: 61 GRLPVRMGMYPGVLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPH 120
Query: 146 RGFDSHYG--YWQGLQDYYDHSCKATFEPYQG--------LDMRHNMQVDNKTIGIYSTD 195
+GF G Y + +C P G + + N+ V+ + + +
Sbjct: 121 QGFHRFLGIPYSHDQGPCQNLTCFPPATPCDGGCDQGLVPIPLLANLSVEAQPPWLPGLE 180
Query: 196 L-YTEAAINVIAEHNKS-KPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPERRTY 253
Y A +++A+ + +P FLY A H Y F F + S R +
Sbjct: 181 ARYMAFAHDLMADAQREDRPFFLYYASHHTH----YPQFSG-----QSFAERSG--RGPF 229
Query: 254 AGMVSRLDESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLRGMKSTPW 313
+ LD +VG ++ A+ G+LE ++V+F ADNG + + S G + LR K T +
Sbjct: 230 GDSLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRM-SRGGCSGLLRCGKGTTY 288
Query: 314 DGGMRGVA-AIWSPWLKQTQKVSSELFHISDWLPTLCAAAGIEINDTSLDGVNQWDVLTK 372
+GG+R A A W + V+ EL D LPTL A AG + + +LDG + +L
Sbjct: 289 EGGVREPALAFWPGHI--APGVTHELASSLDLLPTLAALAGAPLPNVTLDGFDLSPLLLG 346
Query: 373 GAKTKRSEILHNIDNVDNPQKYYAALRVDDLKYVAGTDNNGQSD 416
K+ R + D + + A+R K T + SD
Sbjct: 347 TGKSPRQSLFFYPSYPDEVRGVF-AVRTGKYKAHFFTQGSAHSD 389
>pdb|1N2K|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1N2L|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1AUK|A Chain A, Human Arylsulfatase A
Length = 489
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/404 (30%), Positives = 189/404 (46%), Gaps = 30/404 (7%)
Query: 28 KKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYVQ-ALCTPSRSALMT 86
+ P+I++I ADDLG+ D+ +G TPN+D LA GL YV +L TPSR+AL+T
Sbjct: 1 RPPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLXTPSRAALLT 60
Query: 87 GKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFRE-VYTPTF 145
G+ P+ +GM GV++ GLPL E + + L GY T GKWHLG E + P
Sbjct: 61 GRLPVRMGMYPGVLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPH 120
Query: 146 RGFDSHYG--YWQGLQDYYDHSCKATFEPYQG--------LDMRHNMQVDNKTIGIYSTD 195
+GF G Y + +C P G + + N+ V+ + + +
Sbjct: 121 QGFHRFLGIPYSHDQGPCQNLTCFPPATPCDGGCDQGLVPIPLLANLSVEAQPPWLPGLE 180
Query: 196 L-YTEAAINVIAE-HNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPERRTY 253
Y A +++A+ + +P FLY A H Y F F + S R +
Sbjct: 181 ARYMAFAHDLMADAQRQDRPFFLYYASHHTH----YPQFSG-----QSFAERSG--RGPF 229
Query: 254 AGMVSRLDESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLRGMKSTPW 313
+ LD +VG ++ A+ G+LE ++V+F ADNG + + S G + LR K T +
Sbjct: 230 GDSLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRM-SRGGCSGLLRCGKGTTY 288
Query: 314 DGGMRGVA-AIWSPWLKQTQKVSSELFHISDWLPTLCAAAGIEINDTSLDGVNQWDVLTK 372
+GG+R A A W + V+ EL D LPTL A AG + + +LDG + +L
Sbjct: 289 EGGVREPALAFWPGHI--APGVTHELASSLDLLPTLAALAGAPLPNVTLDGFDLSPLLLG 346
Query: 373 GAKTKRSEILHNIDNVDNPQKYYAALRVDDLKYVAGTDNNGQSD 416
K+ R + D + + A+R K T + SD
Sbjct: 347 TGKSPRQSLFFYPSYPDEVRGVF-AVRTGKYKAHFFTQGSAHSD 389
>pdb|1HDH|A Chain A, Arylsulfatase From Pseudomonas Aeruginosa
pdb|1HDH|B Chain B, Arylsulfatase From Pseudomonas Aeruginosa
Length = 536
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 124/425 (29%), Positives = 182/425 (42%), Gaps = 105/425 (24%)
Query: 28 KKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYVQALCTPSRSALMTG 87
K+P+ ++I+ADDLG++D+ G +I TPN+DALA GL L + + +P+RS L+TG
Sbjct: 3 KRPNFLVIVADDLGFSDIGAFGG-EIATPNLDALAIAGLRLTDFHTASTXSPTRSMLLTG 61
Query: 88 K--YPIHIGMQHGVI---LEGEP-WGLPLTEKL--LPQYLKEAGYATHAIGKWHLGFFRE 139
+ IG + LEG+P + L E++ LP+ L+EAGY T GKWHLG E
Sbjct: 62 TDHHIAGIGTMAEALTPELEGKPGYEGHLNERVVALPELLREAGYQTLMAGKWHLGLKPE 121
Query: 140 VYTPTFRGFDSHYGYWQGLQDY------YDHSCKATFEPYQGLDMRHNMQVDNKTIGIYS 193
TP RGF+ + G ++ YD S + L + +D G YS
Sbjct: 122 -QTPHARGFERSFSLLPGAANHYGFEPPYDESTPRILKGTPALYVEDERYLDTLPEGFYS 180
Query: 194 TDLYTEAAINVIAEHNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLD--------- 244
+D + + + + E ++S+P F YL A H P QAP E V K+
Sbjct: 181 SDAFGDKLLQYLKERDQSRPFFAYLPFSAPHW-----PLQAPREIVEKYRGRYDAGPEAL 235
Query: 245 --------------------------------ISDPER-------RTYAGMVSRLDESVG 265
+ D ER YA MV R+D ++G
Sbjct: 236 RQERLARLKELGLVEADVEAHPVLALTREWEALEDEERAKSARAMEVYAAMVERMDWNIG 295
Query: 266 NVIAALRKHGMLENSIVLFMADNGA--------PSFGI------------------HSN- 298
V+ LR+ G L+N+ VLFM+DNGA P FG +N
Sbjct: 296 RVVDYLRRQGELDNTFVLFMSDNGAEGALLEAFPKFGPDLLGFLDRHYDNSLENIGRANS 355
Query: 299 ---------KGSNHPLRGMKSTPWDGGMRGVAAIWSPWLKQTQKVSSELFHISDWLPTLC 349
+ + P R K+ GG+R A + P L + +S + D PTL
Sbjct: 356 YVWYGPRWAQAATAPSRLYKAFTTQGGIRVPALVRYPRLSRQGAISHAFATVMDVTPTLL 415
Query: 350 AAAGI 354
AG+
Sbjct: 416 DLAGV 420
>pdb|3ED4|A Chain A, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|B Chain B, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|C Chain C, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|D Chain D, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
Length = 502
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 117/417 (28%), Positives = 180/417 (43%), Gaps = 40/417 (9%)
Query: 28 KKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYVQA-LCTPSRSALMT 86
K+P+++II+ADDLG+ D++ +G + TPNID LA G+ +Y A L +PSR+ L+T
Sbjct: 26 KQPNLVIIMADDLGYGDLATYGHQIVKTPNIDRLAQEGVKFTDYYAPAPLSSPSRAGLLT 85
Query: 87 GKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHL---GFFREVYTP 143
G+ P G++ I G+ L E + LK GY T +GK HL G +
Sbjct: 86 GRMPFRTGIRS-WIPSGKDVALGRNELTIANLLKAQGYDTAMMGKLHLNAGGDRTDQPQA 144
Query: 144 TFRGFDSHYGYWQG------LQDYYDHSCKATFEPYQGLDMRHNMQVDNKTIGIYSTDLY 197
GFD G L + + P L +K G Y
Sbjct: 145 QDMGFDYSLANTAGFVTDATLDNAKERPRYGMVYPTGWLRNGQPTPRADKMSGEY----V 200
Query: 198 TEAAINVIAEHNKSKPMFLYLAHLAVHAG--------NTYEPF------QAPDEEVAKFL 243
+ +N + SKP FLY+A VH+ + Y + Q PD +
Sbjct: 201 SSEVVNWLDNKKDSKPFFLYVAFTEVHSPLASPKKYLDMYSQYMSAYQKQHPDLFYGDWA 260
Query: 244 DISDPERRTYAGMVSRLDESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSN----- 298
D Y +S LD VG V+ ++ G +N+IV+F +DNG +
Sbjct: 261 DKPWRGVGEYYANISYLDAQVGKVLDKIKAMGEEDNTIVIFTSDNGPVTREARKVYELNL 320
Query: 299 KGSNHPLRGMKSTPWDGGMRGVAAI-WSPWLKQTQKVSSELFHISDWLPTLCAAAGIEI- 356
G LRG K W+GG+R A I + L Q + ++ + DW+PTL ++
Sbjct: 321 AGETDGLRGRKDNLWEGGIRVPAIIKYGKHLPQGMVSDTPVYGL-DWMPTLAKMMNFKLP 379
Query: 357 NDTSLDGVNQWDVLTKGAKTKRSEILHNIDN--VDNPQKYYAALRVDDLKYVAGTDN 411
D + DG + VL + A + ++ ID D+P + A+R D K + +N
Sbjct: 380 TDRTFDGESLVPVLEQKALKREKPLIFGIDMPFQDDPTDEW-AIRDGDWKMIIDRNN 435
>pdb|1P49|A Chain A, Structure Of Human Placental EstroneDHEA SULFATASE
Length = 562
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 118/432 (27%), Positives = 176/432 (40%), Gaps = 77/432 (17%)
Query: 26 APKKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYVQA-LCTPSRSAL 84
A +P+II+++ADDLG D +G+ I TPNID LA G+ L QH + L TPSR+A
Sbjct: 2 AASRPNIILVMADDLGIGDPGCYGNKTIRTPNIDRLASGGVKLTQHLAASPLXTPSRAAF 61
Query: 85 MTGKYPIHIGM----QHGVIL-EGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFRE 139
MTG+YP+ GM + GV L GLP E + LK+ GY+T IGKWHLG
Sbjct: 62 MTGRYPVRSGMASWSRTGVFLFTASSGGLPTDEITFAKLLKDQGYSTALIGKWHLGMSCH 121
Query: 140 VYT-----PTFRGFDSHYGYWQGLQDYYDHSCKATFEPYQGLDMRHNMQVDNKTIGIYST 194
T P GF+ YG L + D CK + + + + +G+
Sbjct: 122 SKTDFCHHPLHHGFNYFYGI--SLTNLRD--CKPGEGSVFTTGFKRLVFLPLQIVGV--- 174
Query: 195 DLYTEAAINVIAEHNKSKPMFLYLAHLA------------------VHAGNTYEPFQAPD 236
L T AA+N + + +F L LA YE Q P
Sbjct: 175 TLLTLAALNCLGLLHVPLGVFFSLLFLAALILTLFLGFLHYFRPLNCFMMRNYEIIQQPM 234
Query: 237 E----------EVAKFLD--------------------------ISDPERRTYAGMVSRL 260
E A+F+ + Y V +
Sbjct: 235 SYDNLTQRLTVEAAQFIQRNTETPFLLVLSYLHVHTALFSSKDFAGKSQHGVYGDAVEEM 294
Query: 261 DESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHS----NKGSNHPLRGMKSTPWDGG 316
D SVG ++ L + + ++++ F +D GA + S + GSN +G K+ W+GG
Sbjct: 295 DWSVGQILNLLDELRLANDTLIYFTSDQGAHVEEVSSKGEIHGGSNGIYKGGKANNWEGG 354
Query: 317 MRGVAAIWSPWLKQTQKVSSELFHISDWLPTLCAAAGIEI-NDTSLDGVNQWDVLTKGAK 375
+R + P + Q + E D PT+ AG + D +DG + +L ++
Sbjct: 355 IRVPGILRWPRVIQAGQKIDEPTSNMDIFPTVAKLAGAPLPEDRIIDGRDLMPLLEGKSQ 414
Query: 376 TKRSEILHNIDN 387
E L + N
Sbjct: 415 RSDHEFLFHYCN 426
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query: 494 GAHCNSTVKPCLFNITDDPCEQNNLAESQT----DLLKQLEDKLAIYKSTMVPPGNKPFD 549
G++ P LF+I+ DP E+N L + ++LK +++ + T+
Sbjct: 470 GSYVTHHDPPLLFDISKDPRERNPLTPASEPRFYEILKVMQEAADRHTQTL--------P 521
Query: 550 KRADPARWNN-IWVPW 564
+ D WNN +W PW
Sbjct: 522 EVPDQFSWNNFLWKPW 537
>pdb|2QZU|A Chain A, Crystal Structure Of The Putative Sulfatase Yidj From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr123
Length = 491
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 110/429 (25%), Positives = 175/429 (40%), Gaps = 75/429 (17%)
Query: 30 PHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGL-ILNQHYVQALCTPSRSALMTGK 88
P+++ I AD + + G + TP++D LA G+ N + +P+R L TG
Sbjct: 28 PNLVFIXADQYRGDAIGCIGKEPVKTPHLDKLASEGINFTNAISSYPVSSPARGXLXTGX 87
Query: 89 YPIHIGMQHGVILEGEPWGLPLTE--KLLPQYLKEAGYATHAIGKWHLGFFREVYTPTF- 145
YPI + E P+G+ L++ + LK+ GY IGKWHL + Y T+
Sbjct: 88 YPIGSKVTGNCNSETAPYGVELSQNARCWSDVLKDQGYNXGYIGKWHLDAPYKPYVDTYN 147
Query: 146 ----------------RGFDSHYGYWQGLQDYYDHSCKATFEPYQGLDMRHNMQVDNKTI 189
GFD Y YD+ K + + R + N+
Sbjct: 148 NRGKVAWNEWCPPERRHGFDHWIAYGT-----YDYHLKPXY--WNTTAPRDSFYYVNQ-- 198
Query: 190 GIYSTDLYTEAAINVI-AEHNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISD- 247
+ + AI I + ++ +P L ++ H G YE +E+ K LD+
Sbjct: 199 --WGPEYEASKAIEYINGQKDQKQPFALVVSXNPPHTG--YELVPDRYKEIYKDLDVEAL 254
Query: 248 -------PER------------RTYAGMVSRLDESVGNVIAALRKHGMLENSIVLFMADN 288
P + R Y ++ +DE+VG +I AL+++ + +N+IV+F +D+
Sbjct: 255 CKGRPDIPAKGTEXGDYFRNNIRNYYACITGVDENVGRIIEALKQNNLFDNTIVVFTSDH 314
Query: 289 GAPSFGIHSNKGSNHPLRGMKSTPWDGGMRGVAAIWSPWLKQTQKVSSELFHI--SDWLP 346
G G H N G K ++ R + I S W Q + S+ I +D P
Sbjct: 315 GI-CXGAHENAG--------KDIFYEESXR-IPXILS-WPDQIKPRKSDPLXIAFADLYP 363
Query: 347 TLCAAAGI--EINDT--SLDGVNQWDVLTKGAKTKRSEILHNIDNVDNPQKYYAALRVDD 402
TL + G EI +T + D N+ VLT K + + + DN Y LR D
Sbjct: 364 TLLSXXGFSKEIPETVQTFDLSNE--VLTGKNKKDLVQPYYFV-KFDNHATGYRGLRTDR 420
Query: 403 LKY-VAGTD 410
Y V TD
Sbjct: 421 YTYAVHATD 429
>pdb|3B5Q|A Chain A, Crystal Structure Of A Putative Sulfatase (Np_810509.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.40 A
Resolution
pdb|3B5Q|B Chain B, Crystal Structure Of A Putative Sulfatase (Np_810509.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.40 A
Resolution
Length = 482
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 26 APKKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYVQA-LCTPSRSAL 84
A +KP+ +II D L V +G +Q T ID +A G+I + YV L PSR+AL
Sbjct: 13 AQEKPNFLIIQCDHLTQRVVGAYGQTQGCTLPIDEVASRGVIFSNAYVGCPLSQPSRAAL 72
Query: 85 MTGKYPIHIGMQHGVILEGEPWGLPLTEKL--LPQYLKEAGYATHAIGKWH 133
+G P ++ EP L E + L E+GY GK H
Sbjct: 73 WSGXXPHQTNVRSN---SSEPVNTRLPENVPTLGSLFSESGYEAVHFGKTH 120
>pdb|2W8S|B Chain B, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
pdb|2W8S|C Chain C, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
pdb|2W8S|D Chain D, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
Length = 514
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 123/306 (40%), Gaps = 79/306 (25%)
Query: 53 IPTPNIDALAYNGLILNQHYVQAL--CTPSRSALMTGKYPI-HIGMQHGVILEGEPWGLP 109
+ TPN+D L GL H + C P+R++L+TG Y + H +Q+ V P
Sbjct: 31 LKTPNLDRLCREGLTFRNHVTTCVPXCGPARASLLTGLYLMNHRAVQNTV---------P 81
Query: 110 LTEKLL--PQYLKEAGYATHAIGKWHLGFFREVYT---PTFR-------GFDSHYGYWQG 157
L ++ L + L+ GY IG + P F GF S +
Sbjct: 82 LDQRHLNLGKALRAIGYDPALIGYTTTTPDPRTTSARDPRFTVLGDIMDGFRSVGAFEPN 141
Query: 158 LQDYYDHSCKATFE-PYQGLDM-----RHNMQ-VDNKTIGI----YSTDLYTEAAINVIA 206
++ Y+ + FE P D+ H++ +K I + +TE A+ +
Sbjct: 142 MEGYFGWVAQNGFELPENREDIWLPEGEHSVPGATDKPSRIPKEFSDSTFFTERALTYLK 201
Query: 207 EHNKSKPMFLYLAHLAVH--------------AGNTYEPFQA--PDEEVAK------FLD 244
+ KP FL+L + H A + P +A PD E A+ ++D
Sbjct: 202 GRD-GKPFFLHLGYYRPHPPFVASAPYHAMYKAEDMPAPIRAENPDAEAAQHPLMKHYID 260
Query: 245 -----------------ISDPE----RRTYAGMVSRLDESVGNVIAALRKHGMLENSIVL 283
+ + E R TY G+++ +D+ +G V A L + G ++++++
Sbjct: 261 HIRRGSFFHGAEGSGATLDEGEIRQMRATYCGLITEIDDCLGRVFAYLDETGQWDDTLII 320
Query: 284 FMADNG 289
F +D+G
Sbjct: 321 FTSDHG 326
>pdb|2W8S|A Chain A, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
Length = 513
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 123/306 (40%), Gaps = 79/306 (25%)
Query: 53 IPTPNIDALAYNGLILNQHYVQAL--CTPSRSALMTGKYPI-HIGMQHGVILEGEPWGLP 109
+ TPN+D L GL H + C P+R++L+TG Y + H +Q+ V P
Sbjct: 30 LKTPNLDRLCREGLTFRNHVTTCVPXCGPARASLLTGLYLMNHRAVQNTV---------P 80
Query: 110 LTEKLL--PQYLKEAGYATHAIGKWHLGFFREVYT---PTFR-------GFDSHYGYWQG 157
L ++ L + L+ GY IG + P F GF S +
Sbjct: 81 LDQRHLNLGKALRAIGYDPALIGYTTTTPDPRTTSARDPRFTVLGDIMDGFRSVGAFEPN 140
Query: 158 LQDYYDHSCKATFE-PYQGLDM-----RHNMQ-VDNKTIGI----YSTDLYTEAAINVIA 206
++ Y+ + FE P D+ H++ +K I + +TE A+ +
Sbjct: 141 MEGYFGWVAQNGFELPENREDIWLPEGEHSVPGATDKPSRIPKEFSDSTFFTERALTYLK 200
Query: 207 EHNKSKPMFLYLAHLAVH--------------AGNTYEPFQA--PDEEVAK------FLD 244
+ KP FL+L + H A + P +A PD E A+ ++D
Sbjct: 201 GRD-GKPFFLHLGYYRPHPPFVASAPYHAMYKAEDMPAPIRAENPDAEAAQHPLMKHYID 259
Query: 245 -----------------ISDPE----RRTYAGMVSRLDESVGNVIAALRKHGMLENSIVL 283
+ + E R TY G+++ +D+ +G V A L + G ++++++
Sbjct: 260 HIRRGSFFHGAEGSGATLDEGEIRQMRATYCGLITEIDDCLGRVFAYLDETGQWDDTLII 319
Query: 284 FMADNG 289
F +D+G
Sbjct: 320 FTSDHG 325
>pdb|2W5Q|A Chain A, Structure-Based Mechanism Of Lipoteichoic Acid Synthesis
By Staphylococcus Aureus Ltas.
pdb|2W5S|A Chain A, Structure-Based Mechanism Of Lipoteichoic Acid Synthesis
By Staphylococcus Aureus Ltas.
pdb|2W5T|A Chain A, Structure-Based Mechanism Of Lipoteichoic Acid Synthesis
By Staphylococcus Aureus Ltas
Length = 424
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 253 YAGMVSRLDESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSN-KGSNHPLRGMKST 311
Y LDE++ I L+K G+ +NS+++ D+ +GI N + L G K T
Sbjct: 224 YIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDH----YGISENHNNAMEKLLGEKIT 279
Query: 312 PWDGGMRGVAAIWSPWLKQTQKVSSELFHISDWLPTLCAAAGIEINDTSLDGVNQWDVLT 371
P W ++ +++E D +PT+ AGI+ + + G D+ +
Sbjct: 280 PAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGT---DLFS 336
Query: 372 KG 373
KG
Sbjct: 337 KG 338
>pdb|2W5R|A Chain A, Structure-Based Mechanism Of Lipoteichoic Acid Synthesis
By Staphylococcus Aureus Ltas
Length = 424
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 253 YAGMVSRLDESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSN-KGSNHPLRGMKST 311
Y LDE++ I L+K G+ +NS+++ D+ +GI N + L G K T
Sbjct: 224 YIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDH----YGISENHNNAMEKLLGEKIT 279
Query: 312 PWDGGMRGVAAIWSPWLKQTQKVSSELFHISDWLPTLCAAAGIEINDTSLDGVNQWDVLT 371
P W ++ +++E D +PT+ AGI+ + + G D+ +
Sbjct: 280 PAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGT---DLFS 336
Query: 372 KG 373
KG
Sbjct: 337 KG 338
>pdb|2VQR|A Chain A, Crystal Structure Of A Phosphonate Monoester Hydrolase
From Rhizobium Leguminosarum: A New Member Of The
Alkaline Phosphatase Superfamily
Length = 514
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 20/153 (13%)
Query: 250 RRTYAGMVSRLDESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIH---SNKGSNHPLR 306
R TY G+++ +D+ +G V + L + G ++++++F +D+G G H G N P
Sbjct: 287 RATYCGLITEVDDCLGRVFSYLDETGQWDDTLIIFTSDHGE-QLGDHHLLGKIGYNDPSF 345
Query: 307 GMKSTPWDGGMRGVAAIWSPWLKQTQKVSSELFHISDWLPTLCAAAGIEINDTSLDGVNQ 366
+ D G A + S D +PT+ G +I + DG++
Sbjct: 346 RIPLVIKDAGENARAG----------AIESGFTESIDVMPTILDWLGGKIPH-ACDGLSL 394
Query: 367 WDVLTKGAKTK-RSEILHNIDNVD----NPQKY 394
L++G R+E+ + D D PQ +
Sbjct: 395 LPFLSEGRPQDWRTELHYEYDFRDVYYSEPQSF 427
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 55 TPNIDALAYNGLILNQHYVQAL--CTPSRSALMTGKYPI-HIGMQHGVILE 102
TPN+D L G+ H + C P+R++L+TG Y + H +Q+ V L+
Sbjct: 33 TPNLDRLCREGVTFRNHVTTCVPXCGPARASLLTGLYLMNHRAVQNTVPLD 83
>pdb|3LXQ|A Chain A, The Crystal Structure Of A Protein In The Alkaline
Phosphatase Superfamily From Vibrio Parahaemolyticus To
1.95a
pdb|3LXQ|B Chain B, The Crystal Structure Of A Protein In The Alkaline
Phosphatase Superfamily From Vibrio Parahaemolyticus To
1.95a
Length = 450
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 100/272 (36%), Gaps = 48/272 (17%)
Query: 28 KKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYVQALCTPSRSALMTG 87
K+ +++I+L + LG V G + TPN+D L G Q Y T +RS
Sbjct: 84 KRKNLVILLQESLGAQFVGSLGGLPL-TPNLDELXQEGWQFTQXY----ATGTRSV---- 134
Query: 88 KYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFREVYTPTFRG 147
G+ E G P + A + K GFF +G
Sbjct: 135 ---------RGI--EAVTTGFPPS----------PSRAVVKLSKSQTGFFTIADLLKEQG 173
Query: 148 FDSHYGYWQGLQDYYDHSCKATFEPYQGLD-MRHNMQVDNKTI----GIYSTDLYTEAAI 202
+ + + Y G + +D+ TF G D + N G+ DLY +A
Sbjct: 174 YHTQFIY--GGEANFDNX--KTFFFGNGFDQIVEEKNYTNPGFVGSWGVSDEDLYNKADE 229
Query: 203 NVIAEHNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPERRTYAGMVSRLDE 262
KP F V + + P++ P+ ++ ++ D E T V D
Sbjct: 230 EFERLSKGDKPFFSL-----VFTSSNHSPYEYPEGKIEQY----DSEHXTRNNAVKYSDY 280
Query: 263 SVGNVIAALRKHGMLENSIVLFMADNGAPSFG 294
++G +K +++I + +AD+ A FG
Sbjct: 281 ALGTFFDKAKKSSYWDDTIFIVIADHDARVFG 312
>pdb|1TDH|A Chain A, Crystal Structure Of Human Endonuclease Viii-Like 1
(Neil1)
Length = 364
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 424 NEIDKYSPKEVLYSKAGITFNALKTKLQIKQKHAADPKANSSDALRTILTDEKILEL 480
N I Y E+LY F ++ L+ Q+H P+ S +RT L + +LEL
Sbjct: 172 NGIGNYLRAEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRTKLQNPDLLEL 228
>pdb|1YAF|A Chain A, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|B Chain B, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|C Chain C, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|D Chain D, Structure Of Tena From Bacillus Subtilis
pdb|1YAK|A Chain A, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|B Chain B, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|C Chain C, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|D Chain D, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
Length = 263
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 221 LAVHAGNTYEPFQAPDEEVAKFLDISDPERRTY 253
+A HA TYE A E A+ L+IS+ ER+ +
Sbjct: 98 MASHAQGTYEAEMALHREFAELLEISEEERKAF 130
>pdb|2QCX|A Chain A, Crystal Structure Of Bacillus Subtilis Tena Y112f Mutant
Complexed With Formyl Aminomethyl Pyrimidine
pdb|2QCX|B Chain B, Crystal Structure Of Bacillus Subtilis Tena Y112f Mutant
Complexed With Formyl Aminomethyl Pyrimidine
Length = 263
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 221 LAVHAGNTYEPFQAPDEEVAKFLDISDPERRTY 253
+A HA TYE A E A+ L+IS+ ER+ +
Sbjct: 98 MASHAQGTYEAEMALHREFAELLEISEEERKAF 130
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 467 ALRTILTDEKILELREFARVRCNYDNKGAHCNSTVKPCLFNITDDPCEQNNLAE 520
+R + D + ++R+ A V+ K + T KPCL N PC+ N +
Sbjct: 360 CIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSN----PCKNNGMCR 409
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 467 ALRTILTDEKILELREFARVRCNYDNKGAHCNSTVKPCLFNITDDPCEQNNLAE 520
+R + D + ++R+ A V+ K + T KPCL N PC+ N +
Sbjct: 585 CIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSN----PCKNNGMCR 634
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 467 ALRTILTDEKILELREFARVRCNYDNKGAHCNSTVKPCLFNITDDPCEQNNLAE 520
+R + D + ++R+ A V+ K + T KPCL N PC+ N +
Sbjct: 585 CIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSN----PCKNNGMCR 634
>pdb|1TO9|A Chain A, Crystal Structure Of Thi-4 Protein From Bacillus Subtilis
Length = 260
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 222 AVHAGNTYEPFQAPDEEVAKFLDISDPERRTY 253
A HA TYE A E A+ L+IS+ ER+ +
Sbjct: 96 ASHAQGTYEAEXALHREFAELLEISEEERKAF 127
>pdb|1TO9|B Chain B, Crystal Structure Of Thi-4 Protein From Bacillus Subtilis
Length = 260
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 222 AVHAGNTYEPFQAPDEEVAKFLDISDPERRTY 253
A HA TYE A E A+ L+IS+ ER+ +
Sbjct: 96 ASHAQGTYEAEXALHREFAELLEISEEERKAF 127
>pdb|1TYH|A Chain A, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|B Chain B, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|D Chain D, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|E Chain E, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
Length = 248
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 222 AVHAGNTYEPFQAPDEEVAKFLDISDPERRTY 253
A HA TYE A E A+ L+IS+ ER+ +
Sbjct: 74 ASHAQGTYEAEXALHREFAELLEISEEERKAF 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,280,339
Number of Sequences: 62578
Number of extensions: 858918
Number of successful extensions: 1845
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1768
Number of HSP's gapped (non-prelim): 47
length of query: 593
length of database: 14,973,337
effective HSP length: 104
effective length of query: 489
effective length of database: 8,465,225
effective search space: 4139495025
effective search space used: 4139495025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)