RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10434
(593 letters)
>gnl|CDD|225661 COG3119, AslA, Arylsulfatase A and related enzymes [Inorganic ion
transport and metabolism].
Length = 475
Score = 235 bits (600), Expect = 1e-70
Identities = 130/448 (29%), Positives = 182/448 (40%), Gaps = 71/448 (15%)
Query: 28 KKPHIIIILADDLGWNDVSFHGSSQ-IPTPNIDALAYNGLILNQHYVQA-LCTPSRSALM 85
K+P+I+II+ADDLG+ D+ +G PTPNID LA G+ Y + C PSR+AL+
Sbjct: 3 KRPNILIIMADDLGYGDLGAYGGPVVGPTPNIDRLAAEGVRFTNAYTTSPCCGPSRAALL 62
Query: 86 TGKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFREVYTPTF 145
TG+YP G+ G P GLP L + LKEAGY T GKWHLG E
Sbjct: 63 TGRYPFRTGVGGNAEPPGYPGGLPDEVPTLAELLKEAGYYTALFGKWHLGEKDEDPAGGD 122
Query: 146 RGFDSHYGYWQGLQDYYDHSCKATFEPY---QGLDMRHNMQVDNKTIGIYSTDLYTEAAI 202
GFD YG+ GL D + P + + V K + +
Sbjct: 123 HGFDEFYGFLGGLTDEWYPELVDVPPPGDVPEFDQEEGDPYVAGK-----DSADLADRFR 177
Query: 203 NVIAEHNKSKPMFLYLAHLAVHAGNT------------YEPFQAPDEEVAKFLDISDP-- 248
E KP FL A A A + Y+ + D FL ++ P
Sbjct: 178 RQAKEDAPDKPPFLLTAPFAPPAPDPVDFEWPDEYRGFYDRAKRLDRP--FFLYLAPPDP 235
Query: 249 ----------------------ERRTYAGMVSRLDESVGNVIAALRKHGMLENSIVLFMA 286
YA V LD+ +G ++ AL++ G+L+N+IV+F +
Sbjct: 236 HLSRRLPAADGLPAEEEEDGARLMTVYAACVRYLDDQIGRLLDALKELGLLDNTIVVFTS 295
Query: 287 DNGAPSFGIHSNKGSNHPLRGMKSTPWDGGMRGVAAIWSPWLKQTQ-KVSSELFHISDWL 345
D+GA G H P RG K T ++GG R I P + +V L + D L
Sbjct: 296 DHGAW-LGAH-----GTPFRGYKGTLYEGGTRVPLIIRWPGGIKPGGRVVDALVSLIDLL 349
Query: 346 PTLCAAAGIEINDTSLDGVNQWDVLTKGAKTKRSEILHNIDNVDNPQKYY---------A 396
PTL AAG+ LDG + L K + ++ Y
Sbjct: 350 PTLLDAAGVPP-PKDLDGQSLPPKLQKPGLDGVPLLEWLAGGKAAVREEYGYFGELFGLR 408
Query: 397 ALRVDDLKYV------AGTDNNGQSDEW 418
A+R DD KY+ + ++D W
Sbjct: 409 AIRRDDWKYIVFLPADPTLLYDVRNDPW 436
>gnl|CDD|216172 pfam00884, Sulfatase, Sulfatase.
Length = 332
Score = 212 bits (541), Expect = 1e-63
Identities = 103/347 (29%), Positives = 149/347 (42%), Gaps = 39/347 (11%)
Query: 30 PHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYV-QALCTPSRSALMTGK 88
P+++++L + L D+ +G + TP +D LA GL+ + Y L PSR AL+TG
Sbjct: 1 PNVVLVLGESLRAPDLGLYGYPRPTTPFLDRLAEEGLLFSNFYSGGTLTAPSRFALLTGL 60
Query: 89 YPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFREVYTPTFRGF 148
P + G P GLP TE LP LK AGY T AIGKWHL ++ GF
Sbjct: 61 PPHNFGSGVST-----PIGLPRTEPSLPDLLKRAGYNTGAIGKWHLSWYNRQSVYKNLGF 115
Query: 149 DSHYGYWQGLQDYYDHSCKATFEPYQGLDMRHNMQVDNKTIGIYSTDLYTEAAINVIAEH 208
D +G G Y D Y N + G S + + A+ +
Sbjct: 116 DKFFGRNTGEDLYKDPE----DVGY------------NCSGGGVSDEALLDEALEFLD-- 157
Query: 209 NKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPE----RRTYAGMVSRLDESV 264
N KP FL L + H Y E+ A F S +Y + D+++
Sbjct: 158 NNDKPFFLVLHTMGSHGPPYY--PDRYPEKYATFKPTSTCSEEQLLNSYDNSLLYTDDAI 215
Query: 265 GNVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLRGMKS-TPWDGGMRGVAAI 323
G V+ L ++G+L+N++V++ +D+G G L G K+ +GG R I
Sbjct: 216 GRVLEKL-ENGLLDNTLVVYTSDHGPSL-------GGGGYLHGGKTDNAPEGGYRVPLLI 267
Query: 324 WSPWLKQTQKVSSELFHISDWLPTLCAAAGIEINDTSLDGVNQWDVL 370
WSP K + + L D PT+ AGI D LDG + L
Sbjct: 268 WSPGGKPKGQKNEALVSHVDLFPTILDLAGILTEDLLLDGKDLLPTL 314
>gnl|CDD|237491 PRK13759, PRK13759, arylsulfatase; Provisional.
Length = 485
Score = 120 bits (304), Expect = 3e-29
Identities = 104/425 (24%), Positives = 166/425 (39%), Gaps = 100/425 (23%)
Query: 25 TAPKKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYVQA-LCTPSRSA 83
KKP+II+I+ D + + + +G+ + TPN+D LA G Y CTP+R+A
Sbjct: 2 VQTKKPNIILIMVDQMRGDCLGCNGNKAVETPNLDMLASEGYNFENAYSAVPSCTPARAA 61
Query: 84 LMTGKYPIHIGM---QHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWH------- 133
L+TG H G V PW T LPQ ++AGY T IGK H
Sbjct: 62 LLTGLSQWHHGRVGYGDVV-----PWNYKNT---LPQEFRDAGYYTQCIGKMHVFPQRNL 113
Query: 134 LGF-----------FREVYTPTFRGFDSHYGYWQGLQ------DYYD-----HSCKATFE 171
LGF + F S Y W + D D +S A
Sbjct: 114 LGFHNVLLHDGYLHSGRNEDKSQFDFVSDYLAWLREKAPGKDPDLTDIGWDCNSWVA--R 171
Query: 172 PYQGLDMRHNMQVDNKTIGIYSTDLYTEAAINVIAEHNKSKPMFLYLAHLAVHAG----- 226
P+ + H T+ +I + + +KP FL ++ H+
Sbjct: 172 PWDLEERLH------------PTNWVGSESIEFLRRRDPTKPFFLKMSFARPHSPYDPPK 219
Query: 227 ---NTYEPFQAPDEEVA--KFLDISDPE-------------------RRTYAGMVSRLDE 262
+ Y+ PD + ++ + DPE R Y G+++ +D
Sbjct: 220 RYFDMYKDADIPDPHIGDWEYAEDQDPEGGSIDALRGNLGEEYARRARAAYYGLITHIDH 279
Query: 263 SVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLRGMKSTPWDGGMRGVAA 322
+G + AL++ G+L+N+I+LF++D+G G ++ R K P++G +
Sbjct: 280 QIGRFLQALKEFGLLDNTIILFVSDHG-------DMLGDHYLFR--KGYPYEGSAH-IPF 329
Query: 323 I--WSPWLKQTQK--VSSELFHISDWLPTLCAAAGIEINDTSLDGVNQWDVLTKGAKTKR 378
I L + V ++ + D +PTL AG I D +DG + + L G
Sbjct: 330 IIYDPGGLLAGNRGTVIDQVVELRDIMPTLLDLAGGTIPDD-VDGRSLKN-LIFGQYEGW 387
Query: 379 SEILH 383
LH
Sbjct: 388 RPYLH 392
>gnl|CDD|234202 TIGR03417, chol_sulfatase, choline-sulfatase.
Length = 500
Score = 52.4 bits (126), Expect = 4e-07
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 31/165 (18%)
Query: 28 KKPHIIIILADDLGWNDVSFHG-SSQIPTPNIDALAYNGLILNQHYVQA-LCTPSRSALM 85
+P+I+II+AD L + +G + + PN+ LA ++ + Y + LC PSR++ M
Sbjct: 1 TRPNILIIMADQLNGTLLPDYGPARWLHAPNLKRLAARSVVFDNAYCASPLCAPSRASFM 60
Query: 86 TGKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFREVYTPTF 145
+G+ P G YL+ AGY T GK H F
Sbjct: 61 SGQLPSRTGAYDNAA------EFASDIPTYAHYLRRAGYRTALSGKMH-----------F 103
Query: 146 RGFDSHYGYWQGL-QDYYDHSCKATF-------EPYQGLDMRHNM 182
G D +G+ + L D Y A F +P + +D HNM
Sbjct: 104 CGPDQLHGFEERLTTDIY----PADFGWTPDWRKPGERIDWYHNM 144
Score = 48.9 bits (117), Expect = 5e-06
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 14/109 (12%)
Query: 250 RRTYAGMVSRLDESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLRGM- 308
RR Y G +S +D+ +G ++ L + +++I++F +D+G G RG+
Sbjct: 252 RRAYFGAISYIDDKIGELLDTLEETRQADDTIIVFTSDHG-------DMLGE----RGLW 300
Query: 309 -KSTPWDGGMRGVAAIWSPWLKQTQKVSSELFHISDWLPTLCAAAGIEI 356
K + ++G R I +P +V + + + D LPTL AG ++
Sbjct: 301 YKMSFFEGSARVPLMIAAPGRFAPGRVDAPVSTL-DLLPTLVDLAGGDM 348
>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins,
alkaline phosphatase superfamily [Cell envelope
biogenesis, outer membrane].
Length = 650
Score = 51.7 bits (124), Expect = 9e-07
Identities = 65/348 (18%), Positives = 126/348 (36%), Gaps = 46/348 (13%)
Query: 25 TAPKKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNG--LILNQHYVQALCTPSRS 82
K P++I+I + ++ + TPN++ L G L+ + + +
Sbjct: 257 GEAKGPNVIVIQLESFQGFLINPKVNGIEVTPNLNKLQKGGVSLLFSNFFGGVTAGSTFD 316
Query: 83 ALMTGKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFF-REVY 141
A + + G + + + LP LK+ GY T A+ F+ R+ +
Sbjct: 317 AETGVLSSLFPAAR-GSVFQTYGDNKYSS---LPAILKQQGYKTAALHGGDGSFWNRKSF 372
Query: 142 TPTFRGFDSHYGYWQGLQDYYDHSCKATFEPYQGLDMRHNMQVDNKTIGIYSTDLYTEAA 201
F G D++D + D++ S + +
Sbjct: 373 YKIF-----------GFDDFFDLE-------------SFDGNADSEIGWGLSDKDLFKES 408
Query: 202 INVIAEHNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFL---DISDPERRTYAGMVS 258
+ ++ + KP F ++ L+ H PF+ P+ + + L + Y V
Sbjct: 409 LPLLKKL--KKPFFSFVITLSNHG-----PFELPEGKRNELLEEPLSASTALANYLQAVH 461
Query: 259 RLDESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLRGMKSTPWDGGMR 318
DE++G I L+K G+ +NS+++ D+ S + G KS D R
Sbjct: 462 YADEALGQFIDKLKKSGLYKNSVIVLYGDHYGISGNQNLAMPK---FLG-KSYDIDMLQR 517
Query: 319 GVAAIWSPWLKQTQKVSSELFHISDWLPTLCAAAGIEINDTSLDGVNQ 366
I +P +K +K+ + + D PT+ GI + G +
Sbjct: 518 VPLLIHAPGIKNKKKIDTVGGQL-DIAPTILGLLGISTKSYAFFGRDL 564
>gnl|CDD|216635 pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide
pyrophosphatase. This family consists of
phosphodiesterases, including human plasma-cell membrane
glycoprotein PC-1 / alkaline phosphodiesterase i /
nucleotide pyrophosphatase (nppase). These enzymes
catalyze the cleavage of phosphodiester and
phosphosulfate bonds in NAD, deoxynucleotides and
nucleotide sugars. Also in this family is ATX an
autotaxin, tumour cell motility-stimulating protein
which exhibits type I phosphodiesterases activity. The
alignment encompasses the active site. Also present with
in this family is 60-kDa Ca2+-ATPase form F. odoratum.
Length = 342
Score = 42.4 bits (100), Expect = 5e-04
Identities = 48/268 (17%), Positives = 88/268 (32%), Gaps = 53/268 (19%)
Query: 33 IIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHY--VQALCTPSRSALMTGKYP 90
++I D + + TPN+ ALA G+ L P+ ++TG YP
Sbjct: 2 LVISLDGFRADYLDRLAG---LTPNLAALAKEGVSAPYLTPVFPTLTFPNHYTIVTGLYP 58
Query: 91 IHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFRE---VYTPTFRG 147
HG++ G W P K +T G T +G
Sbjct: 59 GS----HGIV--GNTWYDPKRLK----------ESTFWDQLPESGDGDPKPIWVTAKKQG 102
Query: 148 FDSHYGYWQGLQDYYDHSCKATFEPYQGLDMRHNMQVDNKTIGIYS-TDLYTEAAINVIA 206
+ +W G + + N ++ + T+ + +
Sbjct: 103 LKAAALFWPG--SHAAKPGYGPLVSELPDRLDAY----NGSVPLDVITEPRVDTVLTDWL 156
Query: 207 EHNKSKP----MFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPERRTYAGMVSRLDE 262
+ + +YL G+ Y P PE + R+D
Sbjct: 157 KLLLDAERPDLLLVYLEEPD-RVGHKYGP--------------DSPEVEDA---LRRVDR 198
Query: 263 SVGNVIAALRKHGMLENSIVLFMADNGA 290
++G ++ AL + G+LEN+ V+ ++D+G
Sbjct: 199 AIGRLLEALDERGLLENTNVIVVSDHGM 226
>gnl|CDD|217311 pfam02995, DUF229, Protein of unknown function (DUF229). Members
of this family are uncharacterized. They are 500-1200
amino acids in length and share a long region
conservation that probably corresponds to several
domains. The Go annotation for the protein indicates
that it is involved in nematode larval development and
has a positive regulation on growth rate.
Length = 492
Score = 39.2 bits (92), Expect = 0.005
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 256 MVSRLDESVGNVIAALRKHGMLENSIVLFMADNG 289
S LDE + N + L + G+LEN+IV+FM+D+G
Sbjct: 307 YASALDEDLLNYLKKLHERGLLENTIVIFMSDHG 340
>gnl|CDD|225625 COG3083, COG3083, Predicted hydrolase of alkaline phosphatase
superfamily [General function prediction only].
Length = 600
Score = 36.3 bits (84), Expect = 0.044
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 210 KSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPERRTYAGMVSRLDESVGNVIA 269
+ P F YL+ + HA P AK P + Y + +D +G V+
Sbjct: 391 EDNPWFSYLSLNSSHA------NDDPSSNQAKARP---PFKNRYQNALREVDSQIGRVLE 441
Query: 270 ALRKHGMLENSIVLFMADNGAP 291
LR G+L+N++V+ AD+G
Sbjct: 442 QLRNSGLLDNTVVIITADHGEE 463
>gnl|CDD|224441 COG1524, COG1524, Uncharacterized proteins of the AP superfamily
[General function prediction only].
Length = 450
Score = 34.5 bits (79), Expect = 0.15
Identities = 54/285 (18%), Positives = 99/285 (34%), Gaps = 42/285 (14%)
Query: 23 NTTAPKKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHY--VQALCTPS 80
T K +++I D L + + P + +LA NG+ + + P
Sbjct: 32 AATPAPKKKLVLISIDGLRADVLDRKAGI---LPFLSSLAENGVHVAELISVFPTTTRPR 88
Query: 81 RSALMTGKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFR-- 138
+ L+TG YP HG++ P T + Q+L + G G
Sbjct: 89 HTTLITGSYPDE----HGIVGNI--LYDPETGDSVLQFLLDNPTILFP-GDDEAGMDVAA 141
Query: 139 --EVYTPTFRGFDSHYGYWQGLQDYYDHSCKATFEPYQGLDMRHNMQVDN--KTIGIYST 194
E T + + + W +Y H P R + D+ K Y +
Sbjct: 142 PFESLTVSDKLRVAVDLVWDVPILHYLHI----GGPDHITMRRFLIDEDDNIKPGYDYIS 197
Query: 195 DLYTEAAINVIAEH-NKSKPMFLYLAHLAV--HAGNTYEPFQAPDEEVAKFLDISDPERR 251
+ + ++ + + + L L +L G+ Y P+
Sbjct: 198 EHFLDSLLFLDSVLLLDRADPDLLLVYLPNIDAIGHKY-----------------GPDSP 240
Query: 252 TYAGMVSRLDESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIH 296
YA V +D +G ++ L+K G+ E +V+ +D+G G+H
Sbjct: 241 EYAEAVREVDSLLGELLELLKKRGLYEEYLVIITSDHGMSPLGVH 285
>gnl|CDD|115208 pfam06536, Av_adeno_fibre, Avian adenovirus fibre. This family
contains avian adenovirus fibre proteins, which have
been linked to variations in virulence. Avian
adenoviruses possess penton capsomers that consist of a
pentameric base associated with two fibres.
Length = 97
Score = 31.1 bits (70), Expect = 0.34
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 544 GNKPFDKRADPARWNNIWVPWYDELDKQKAIETMRLHKPLLSPTTITL 591
GN+P D ++ AR+ WV Y + I+T +SP+T TL
Sbjct: 53 GNRPTDANSENARYFTFWVSAYLQQCNLSGIQT-----GTVSPSTATL 95
>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.
Length = 502
Score = 32.6 bits (75), Expect = 0.57
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 263 SVGNVIAALRKHGMLENSIVLFMADNGAP 291
+V VI LR+HG LE + V+ + P
Sbjct: 204 AVARVIETLREHGALEYTTVVVAEASDPP 232
>gnl|CDD|219398 pfam07394, DUF1501, Protein of unknown function (DUF1501). This
family contains a number of hypothetical bacterial
proteins of unknown function approximately 400 residues
long.
Length = 393
Score = 32.7 bits (75), Expect = 0.60
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 14/101 (13%)
Query: 260 LDESVGNVIAALRKHGMLENSIVLFMADNGAPSFG----IHSNKGSNHPLRGMKSTPW-- 313
LD+++ ++ L++ G+L++++V++ + FG I+ N G +H G T W
Sbjct: 274 LDQALAALLKDLKQRGLLDDTLVVWGGE-----FGRTPRINGNGGRDHNPWGF--TMWMA 326
Query: 314 DGGMRGVAAIWSPWLKQTQKVSSELFHISDWLPTLCAAAGI 354
GG++G + H+ D T+ GI
Sbjct: 327 GGGVKGGRIY-GATDELGYAAVENPVHVHDLHATILHLLGI 366
>gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH;
Provisional.
Length = 335
Score = 31.4 bits (71), Expect = 1.3
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 18/82 (21%)
Query: 55 TPNIDALAYN-GLILNQHYVQALCTPSRSAL--------MTGKYPIHI----GMQHGVIL 101
T NI + N G+ILN+ V A+ T +++ L M GK P I M+ GVI
Sbjct: 13 TANILVYSKNKGIILNEPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIA 72
Query: 102 EGEPWGLPLTEKLLPQYLKEAG 123
+ + +T LL Q +K+AG
Sbjct: 73 DYD-----MTTDLLKQIMKKAG 89
>gnl|CDD|235872 PRK06840, PRK06840, hypothetical protein; Validated.
Length = 339
Score = 30.4 bits (69), Expect = 2.6
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 429 YSPKEVLYS-----KAGITFNALKTKLQIKQKHAADPKANSSD 466
Y PK+V+ + K GI + K I +K P+ ++SD
Sbjct: 13 YLPKDVMTAEEIAEKTGIPEEVVIEKFGIYEKPVPGPEDHTSD 55
>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha.
A small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, and in principle may run in either direction. This
model represents the F1 alpha subunit of this apparent
second ATP synthase.
Length = 497
Score = 30.1 bits (68), Expect = 3.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 263 SVGNVIAALRKHGMLENSIVLFMADNGAP 291
+V V+A LR+HG ++ +IV+ N P
Sbjct: 204 AVAKVVANLREHGAMDYTIVVVTEGNDPP 232
>gnl|CDD|236448 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.
Length = 502
Score = 29.6 bits (68), Expect = 4.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 263 SVGNVIAALRKHGMLENSIV 282
+V V+ L +HG +E +IV
Sbjct: 204 TVAQVVRKLEEHGAMEYTIV 223
>gnl|CDD|107358 cd06363, PBP1_Taste_receptor, Ligand-binding domain of the T1R
taste receptor. Ligand-binding domain of the T1R taste
receptor. The T1R is a member of the family C receptors
within the G-protein coupled receptor superfamily, which
also includes the metabotropic glutamate receptors,
GABAb receptors, the calcium-sensing receptor (CaSR),
the V2R pheromone receptors, and a small group of
uncharacterized orphan receptors.
Length = 410
Score = 29.6 bits (67), Expect = 5.1
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 16/63 (25%)
Query: 20 AFLNTTAPKKPHI--IIILADDLGWNDVSFHGS-------------SQIPTPNIDALAYN 64
+FL T K I ++ L + GWN V+F GS I I +AY
Sbjct: 152 SFLRTVPSDKDQIEAMVQLLQEFGWNWVAFLGSDDEYGRDGLQLFSELIANTGI-CIAYQ 210
Query: 65 GLI 67
GLI
Sbjct: 211 GLI 213
>gnl|CDD|216940 pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase. This
family consists of both phospholipases and
carboxylesterases with broad substrate specificity, and
is structurally related to alpha/beta hydrolases
pfam00561.
Length = 213
Score = 29.2 bits (66), Expect = 5.4
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 15/103 (14%)
Query: 247 DPERRTYAGMVSRLDESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLR 306
P + E++ +I A K G+ + I++ GA + +++ S PL
Sbjct: 70 SPNASEDEAGIKNSAETIEELIDAELKTGIPASRIIIGGFSQGA-AVALYTALTSPQPLG 128
Query: 307 GMKSTPWDGGMRGVAAIWSPWLKQTQKVSSELFHISDWLPTLC 349
G +S L QK ++D +P L
Sbjct: 129 G-------------IIAFSGALPLPQKFPQHPTGVAD-IPILQ 157
>gnl|CDD|235203 PRK04024, PRK04024, cofactor-independent phosphoglycerate mutase;
Provisional.
Length = 412
Score = 29.1 bits (66), Expect = 7.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 28 KKPHIIIILADDLGWNDVSFHGSSQIP-----TPNIDALAYNGLI 67
K I++I+ D LG V G + P TPN+D LA G+
Sbjct: 1 KMMKILLIILDGLGDRPVKELGG-KTPLEAANTPNMDKLAKEGIC 44
>gnl|CDD|225730 COG3189, COG3189, Uncharacterized conserved protein [Function
unknown].
Length = 117
Score = 27.3 bits (61), Expect = 9.6
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 553 DPARWNNIWVPWYDELDKQKAIETMRLHKPLLSPTTITLIY 593
DP +W+ + EL+ Q A L + S +TL+Y
Sbjct: 58 DPKKWDEFRERYRAELNAQDAQALEDLLD-IASHGPLTLLY 97
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.420
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,658,429
Number of extensions: 3000040
Number of successful extensions: 2377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2357
Number of HSP's successfully gapped: 31
Length of query: 593
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 491
Effective length of database: 6,413,494
Effective search space: 3149025554
Effective search space used: 3149025554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.7 bits)