RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10434
(593 letters)
>1fsu_A N-acetylgalactosamine-4-sulfatase; glycosaminoglycan degradation,
hydrolase, glycopr lysosome; HET: ALS NAG; 2.50A {Homo
sapiens} SCOP: c.76.1.2
Length = 492
Score = 584 bits (1508), Expect = 0.0
Identities = 199/546 (36%), Positives = 279/546 (51%), Gaps = 65/546 (11%)
Query: 28 KKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYVQALCTPSRSALMTG 87
+ PH++ +LADDLGWNDV FHGS +I TP++DALA G++L+ +Y Q L TPSRS L+TG
Sbjct: 2 RPPHLVFLLADDLGWNDVGFHGS-RIRTPHLDALAAGGVLLDNYYTQPLXTPSRSQLLTG 60
Query: 88 KYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFREVYTPTFRG 147
+Y I G+QH +I +P +PL EKLLPQ LKEAGY TH +GKWHLG +R+ PT RG
Sbjct: 61 RYQIRTGLQHQIIWPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRG 120
Query: 148 FDSHYGYWQGLQDYYDHS----CKATFEPYQGLDMRHNMQVDNKTIGIYSTDLYTEAAIN 203
FD+++GY G +DYY H A LD R +V +YST+++T+ AI
Sbjct: 121 FDTYFGYLLGSEDYYSHERCTLIDALNVTRCALDFRDGEEVATGYKNMYSTNIFTKRAIA 180
Query: 204 VIAEHNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPERRTYAGMVSRLDES 263
+I H KP+FLYLA +VH P Q P+E + + I D R YAGMVS +DE+
Sbjct: 181 LITNHPPEKPLFLYLALQSVHE-----PLQVPEEYLKPYDFIQDKNRHHYAGMVSLMDEA 235
Query: 264 VGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLRGMKSTPWDGGMRGVAAI 323
VGNV AAL+ G+ N++ +F DNG + G+N PLRG K + W+GG+RGV +
Sbjct: 236 VGNVTAALKSSGLWNNTVFIFSTDNGGQTLA----GGNNWPLRGRKWSLWEGGVRGVGFV 291
Query: 324 WSPWLKQTQKVSSELFHISDWLPTLCAAAGIEI-NDTSLDGVNQWDVLTKGAKTKRSEIL 382
SP LKQ + EL HISDWLPTL A LDG + W +++G+ + R E+L
Sbjct: 292 ASPLLKQKGVKNRELIHISDWLPTLVKLARGHTNGTKPLDGFDVWKTISEGSPSPRIELL 351
Query: 383 HNIDNVDNPQKYYAALRVDDLKYVAGTDNNGQSDEWYGDTDNEIDKYSPKEVLYSKAGIT 442
HNID P ++ + A D++ + + +
Sbjct: 352 HNID----PNFVDSSPCPRNSMAPAKDDSSLPEYSAFNTSVHA----------------- 390
Query: 443 FNALKTKLQIKQKHAADPKANSSDALRT----ILTDEKILELREFARVRCNYDNKGAHCN 498
A+R +LT + N +
Sbjct: 391 ------------------------AIRHGNWKLLTGYPGCGYWFPPPSQYNVSEIPSSDP 426
Query: 499 STVKPCLFNITDDPCEQNNLAESQTDLLKQLEDKLAIYKSTMVPPGNKPFDKRADPARWN 558
T LF+I DP E+++L+ ++ +L +L Y VP D R DP +
Sbjct: 427 PTKTLWLFDIDRDPEERHDLSREYPHIVTKLLSRLQFYHKHSVPVYFPAQDPRCDP-KAT 485
Query: 559 NIWVPW 564
+W PW
Sbjct: 486 GVWGPW 491
>3ed4_A Arylsulfatase; structural genomics, PSI-2, protein structure INI
NEW YORK structural genomix research consortium,
NYSGXRC, transferase; 1.70A {Escherichia coli}
Length = 502
Score = 409 bits (1054), Expect = e-138
Identities = 109/438 (24%), Positives = 170/438 (38%), Gaps = 40/438 (9%)
Query: 8 FFALTCTLLFNDAFLNTTAPKKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLI 67
L + K+P+++II+ADDLG+ D++ +G + TPNID LA G+
Sbjct: 6 LIGLAVCTGNAFSPALAAEAKQPNLVIIMADDLGYGDLATYGHQIVKTPNIDRLAQEGVK 65
Query: 68 LNQHYV-QALCTPSRSALMTGKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYAT 126
+Y L +PSR+ L+TG+ P G+ I G+ L E + LK GY T
Sbjct: 66 FTDYYAPAPLSSPSRAGLLTGRMPFRTGI-RSWIPSGKDVALGRNELTIANLLKAQGYDT 124
Query: 127 HAIGKWHLGF---FREVYTPTFRGFDSHYGYWQGLQDYYDHSCKATFEPYQGLDMRHNMQ 183
+GK HL + GFD G A P G+
Sbjct: 125 AMMGKLHLNAGGDRTDQPQAQDMGFDYSLANTAGFVTDATLD-NAKERPRYGMVYPTGWL 183
Query: 184 VDNKTI---GIYSTDLYTEAAINVIAEHNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVA 240
+ + S + + +N + SKP FLY+A VH+ P +P + +
Sbjct: 184 RNGQPTPRADKMSGEYVSSEVVNWLDNKKDSKPFFLYVAFTEVHS-----PLASPKKYLD 238
Query: 241 KFLDISDPERR-------------------TYAGMVSRLDESVGNVIAALRKHGMLENSI 281
+ ++ Y +S LD VG V+ ++ G +N+I
Sbjct: 239 MYSQYMSAYQKQHPDLFYGDWADKPWRGVGEYYANISYLDAQVGKVLDKIKAMGEEDNTI 298
Query: 282 VLFMADNGAPSFGIHSNK-----GSNHPLRGMKSTPWDGGMRGVAAIWSPWLKQTQKVSS 336
V+F +DNG + G LRG K W+GG+R A I VS
Sbjct: 299 VIFTSDNGPVTREARKVYELNLAGETDGLRGRKDNLWEGGIRVPAIIKYGKHLPQGMVSD 358
Query: 337 ELFHISDWLPTLCAAAGIEI-NDTSLDGVNQWDVLTKGAKTKRSEILHNIDNVDNPQKY- 394
+ DW+PTL ++ D + DG + VL + A + ++ ID
Sbjct: 359 TPVYGLDWMPTLAKMMNFKLPTDRTFDGESLVPVLEQKALKREKPLIFGIDMPFQDDPTD 418
Query: 395 YAALRVDDLKYVAGTDNN 412
A+R D K + +N
Sbjct: 419 EWAIRDGDWKMIIDRNNK 436
Score = 46.2 bits (110), Expect = 2e-05
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 505 LFNITDDPCEQNNLAESQTDLLKQLEDKLAIYKSTMVPPGNKPFDKRADPARWNNIWVPW 564
L+N+ D E NL + D+ KQ+ K YK+ + N K W
Sbjct: 440 LYNLKSDRYETLNLIGKKPDIEKQMYGKFLKYKTDI---DNDSLMKARGDKPEAVTWGEG 496
Query: 565 YD 566
+
Sbjct: 497 HH 498
>1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal
enzyme, hydrolas; HET: NDG NAG; 2.10A {Homo sapiens}
SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P*
1e3c_P* 1e33_P*
Length = 489
Score = 387 bits (995), Expect = e-129
Identities = 120/425 (28%), Positives = 184/425 (43%), Gaps = 30/425 (7%)
Query: 28 KKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYV-QALCTPSRSALMT 86
+ P+I++I ADDLG+ D+ +G TPN+D LA GL YV +L TPSR+AL+T
Sbjct: 1 RPPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLXTPSRAALLT 60
Query: 87 GKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFRE-VYTPTF 145
G+ P+ +GM GV++ GLPL E + + L GY T GKWHLG E + P
Sbjct: 61 GRLPVRMGMYPGVLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPH 120
Query: 146 RGFDSHYGYWQGLQDYYDH----------SCKATFEPYQGLDMRHNMQVDNKTIGI-YST 194
+GF G + + + N+ V+ + +
Sbjct: 121 QGFHRFLGIPYSHDQGPCQNLTCFPPATPCDGGCDQGLVPIPLLANLSVEAQPPWLPGLE 180
Query: 195 DLYTEAAINVIAE-HNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPERRTY 253
Y A +++A+ + +P FLY A H P + + R +
Sbjct: 181 ARYMAFAHDLMADAQRQDRPFFLYYASHHTHY-----PQFSGQSFAERS------GRGPF 229
Query: 254 AGMVSRLDESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLRGMKSTPW 313
+ LD +VG ++ A+ G+LE ++V+F ADNG P S G + LR K T +
Sbjct: 230 GDSLMELDAAVGTLMTAIGDLGLLEETLVIFTADNG-PETMRMSRGGCSGLLRCGKGTTY 288
Query: 314 DGGMRGVAAIWSPWLKQTQKVSSELFHISDWLPTLCAAAGIEINDTSLDGVNQWDVLTKG 373
+GG+R A + P V+ EL D LPTL A AG + + +LDG + +L
Sbjct: 289 EGGVREPALAFWP-GHIAPGVTHELASSLDLLPTLAALAGAPLPNVTLDGFDLSPLLLGT 347
Query: 374 AKTKRSEILHNIDNVDNPQKYYAALRVDDLKYVAGTDNNGQSDEWYGDTDNEIDKYSPKE 433
K+ R + D + + A+R K T + SD + + E
Sbjct: 348 GKSPRQSLFFYPSYPDEVRGVF-AVRTGKYKAHFFTQGSAHSDTTADPACHASSSLTAHE 406
Query: 434 V--LY 436
LY
Sbjct: 407 PPLLY 411
Score = 42.7 bits (101), Expect = 3e-04
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 502 KPCLFNITDDPCEQNNLAESQTD-------LLKQLEDKLAIYKSTMVPPGNKPFDKRADP 554
P L++++ DP E NL LKQL+ A + + G + DP
Sbjct: 407 PPLLYDLSKDPGENYNLLGGVAGATPEVLQALKQLQLLKAQLDAAV-TFGPSQVARGEDP 465
Query: 555 A 555
A
Sbjct: 466 A 466
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG,
structural genomics, PSI-2, protein structure
initiative; 1.70A {Bacteroides fragilis}
Length = 491
Score = 318 bits (816), Expect = e-102
Identities = 101/504 (20%), Positives = 174/504 (34%), Gaps = 79/504 (15%)
Query: 5 RKYFFALTCTLLFNDAFLNTTAPKKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYN 64
AL + + P+++ I+AD + + G + TP++D LA
Sbjct: 3 NIIPQALLTMPILSTGLQAQEKQPTPNLVFIMADQYRGDAIGCIGKEPVKTPHLDKLASE 62
Query: 65 GLILNQHYVQ-ALCTPSRSALMTGKYPIHIGMQHGVILEGEPWG--LPLTEKLLPQYLKE 121
G+ + +P+R LMTG YPI + E P+G L + LK+
Sbjct: 63 GINFTNAISSYPVSSPARGMLMTGMYPIGSKVTGNCNSETAPYGVELSQNARCWSDVLKD 122
Query: 122 AGYATHAIGKWHLGFFREVYTPTF-----------------RGFDSHYGYWQGLQDYYDH 164
GY IGKWHL + Y T+ GFD Y G DY+
Sbjct: 123 QGYNMGYIGKWHLDAPYKPYVDTYNNRGKVAWNEWCPPERRHGFDHWIAY--GTYDYHLK 180
Query: 165 SCKATFEPYQGLDMRHNMQVDNKTIGIYSTDLYTEAAINVIAEH-NKSKPMFLYLAHLAV 223
+ R + N+ + + AI I ++ +P L ++
Sbjct: 181 P-----MYWNTTAPRDSFYYVNQ----WGPEYEASKAIEYINGQKDQKQPFALVVSMNPP 231
Query: 224 HAGNTYEPFQ-APDEEVAKFLDISDPE----------------------RRTYAGMVSRL 260
H ++ PD + D+ R Y ++ +
Sbjct: 232 HT-----GYELVPDRYKEIYKDLDVEALCKGRPDIPAKGTEMGDYFRNNIRNYYACITGV 286
Query: 261 DESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLRGMKSTPWDGGMRGV 320
DE+VG +I AL+++ + +N+IV+F +D+G G K ++ MR
Sbjct: 287 DENVGRIIEALKQNNLFDNTIVVFTSDHG-ICMG--------AHENAGKDIFYEESMRIP 337
Query: 321 AAIWSPWLKQTQKVSSELFHISDWLPTLCAAAGIEIN-DTSLDGVNQWDVLTKGAKTKRS 379
+ P + +K + +D PTL + G ++ + + + G K
Sbjct: 338 MILSWPDQIKPRKSDPLMIAFADLYPTLLSMMGFSKEIPETVQTFDLSNEVLTGKNKKDL 397
Query: 380 EILHNIDNVDNPQKYYAALRVDDLKYVA-GTDNNGQSDEWYGDTDNEIDKYSPKEV--LY 436
+ DN Y LR D Y TD + + D D P E+ +
Sbjct: 398 VQPYYFVKFDNHATGYRGLRTDRYTYAVHATDGKIDNVILF---DRTND---PHEMNNIA 451
Query: 437 SKAGITFNALKTKLQIKQKHAADP 460
S+ + +L+ + DP
Sbjct: 452 SQQLKLTHTFNRQLKTWLEKTNDP 475
Score = 40.4 bits (95), Expect = 0.001
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 505 LFNITDDPCEQNNLAESQTDLLKQLEDKLAIYKSTMVPP 543
LF+ T+DP E NN+A Q L +L + P
Sbjct: 437 LFDRTNDPHEMNNIASQQLKLTHTFNRQLKTWLEKTNDP 475
>1hdh_A Arylsulfatase; hydrolase, formylglycine hydrate; 1.3A {Pseudomonas
aeruginosa} SCOP: c.76.1.2
Length = 536
Score = 279 bits (715), Expect = 4e-87
Identities = 126/501 (25%), Positives = 185/501 (36%), Gaps = 126/501 (25%)
Query: 28 KKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYVQALCTPSRSALMTG 87
K+P+ ++I+ADDLG++D+ G +I TPN+DALA GL L + + +P+RS L+TG
Sbjct: 3 KRPNFLVIVADDLGFSDIGAFGG-EIATPNLDALAIAGLRLTDFHTASTXSPTRSMLLTG 61
Query: 88 KYPIHIGMQH-----GVILEGEPWG---LPLTEKLLPQYLKEAGYATHAIGKWHLGFFRE 139
G+ LEG+P L LP+ L+EAGY T GKWHLG E
Sbjct: 62 TDHHIAGIGTMAEALTPELEGKPGYEGHLNERVVALPELLREAGYQTLMAGKWHLGLKPE 121
Query: 140 VYTPTFRGFDSHYGYWQGLQDYY------DHSCKATFEPYQGLDMRHNMQVDNKTIGIYS 193
TP RGF+ + G ++Y D S + L + +D G YS
Sbjct: 122 -QTPHARGFERSFSLLPGAANHYGFEPPYDESTPRILKGTPALYVEDERYLDTLPEGFYS 180
Query: 194 TDLYTEAAINVIAEHNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKF----------- 242
+D + + + + E ++S+P F YL A H P QAP E V K+
Sbjct: 181 SDAFGDKLLQYLKERDQSRPFFAYLPFSAPHW-----PLQAPREIVEKYRGRYDAGPEAL 235
Query: 243 -------------------------------------LDISDPERRTYAGMVSRLDESVG 265
S YA MV R+D ++G
Sbjct: 236 RQERLARLKELGLVEADVEAHPVLALTREWEALEDEERAKSARAMEVYAAMVERMDWNIG 295
Query: 266 NVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKG------------------------- 300
V+ LR+ G L+N+ VLFM+DNGA + +
Sbjct: 296 RVVDYLRRQGELDNTFVLFMSDNGAEGALLEAFPKFGPDLLGFLDRHYDNSLENIGRANS 355
Query: 301 -----------SNHPLRGMKSTPWDGGMRGVAAIWSPWLKQTQKVSSELFHISDWLPTLC 349
+ P R K+ GG+R A + P L + +S + D PTL
Sbjct: 356 YVWYGPRWAQAATAPSRLYKAFTTQGGIRVPALVRYPRLSRQGAISHAFATVMDVTPTLL 415
Query: 350 AAAGIEINDTS--------LDGVNQWDVLTKGAKTKRSEILHNIDNVDNPQKY----YAA 397
AG+ G + L+ + E + + A
Sbjct: 416 DLAGVRHPGKRWRGREIAEPRGRSWLGWLSGETEAAHDE--------NTVTGWELFGMRA 467
Query: 398 LRVDDLKYVAGTDNNGQSDEW 418
+R D K V G W
Sbjct: 468 IRQGDWKAVYLPAPVGP-ATW 487
Score = 49.1 bits (117), Expect = 3e-06
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 505 LFNITDDPCEQNNLAESQTDLLKQLEDKLAIY-KSTMVPPGNKPFDKR 551
L+++ DP E ++LA+SQ L +L + Y T V G PF R
Sbjct: 489 LYDLARDPGEIHDLADSQPGKLAELIEHWKRYVSETGVVEGASPFLVR 536
>1p49_A Steryl-sulfatase; steroid biosynthesis, steroid sulfatase, estrone
sulfate, dehydroepiandrosterone sulfate, human placental
enzyme; HET: ALS BOG NAG; 2.60A {Homo sapiens} SCOP:
c.76.1.2
Length = 562
Score = 253 bits (647), Expect = 8e-77
Identities = 109/474 (22%), Positives = 172/474 (36%), Gaps = 68/474 (14%)
Query: 26 APKKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYV-QALCTPSRSAL 84
A +P+II+++ADDLG D +G+ I TPNID LA G+ L QH L TPSR+A
Sbjct: 2 AASRPNIILVMADDLGIGDPGCYGNKTIRTPNIDRLASGGVKLTQHLAASPLXTPSRAAF 61
Query: 85 MTGKYPIHIGMQ-----HGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGF--- 136
MTG+YP+ GM + GLP E + LK+ GY+T IGKWHLG
Sbjct: 62 MTGRYPVRSGMASWSRTGVFLFTASSGGLPTDEITFAKLLKDQGYSTALIGKWHLGMSCH 121
Query: 137 --FREVYTPTFRGFDSHYG---------YWQGLQDYYDHSCKATFEPYQGLDMRHNMQVD 185
+ P GF+ YG + + F P Q + +
Sbjct: 122 SKTDFCHHPLHHGFNYFYGISLTNLRDCKPGEGSVFTTGFKRLVFLPLQIVGVTLLTLAA 181
Query: 186 NKTIGIYSTDLYTEAAINVIA-----------EHNKSKPMFLYLAHLAVHA--------- 225
+G+ L ++ +A + + F+ + +
Sbjct: 182 LNCLGLLHVPLGVFFSLLFLAALILTLFLGFLHYFRPLNCFMMRNYEIIQQPMSYDNLTQ 241
Query: 226 -----------GNTYEPFQ---------APDEEVAKFLDISDPERRTYAGMVSRLDESVG 265
NT PF F S Y V +D SVG
Sbjct: 242 RLTVEAAQFIQRNTETPFLLVLSYLHVHTALFSSKDFAGKSQ--HGVYGDAVEEMDWSVG 299
Query: 266 NVIAALRKHGMLENSIVLFMADNGA----PSFGIHSNKGSNHPLRGMKSTPWDGGMRGVA 321
++ L + + ++++ F +D GA S + GSN +G K+ W+GG+R
Sbjct: 300 QILNLLDELRLANDTLIYFTSDQGAHVEEVSSKGEIHGGSNGIYKGGKANNWEGGIRVPG 359
Query: 322 AIWSPWLKQTQKVSSELFHISDWLPTLCAAAGIEI-NDTSLDGVNQWDVLT-KGAKTKRS 379
+ P + Q + E D PT+ AG + D +DG + +L K ++
Sbjct: 360 ILRWPRVIQAGQKIDEPTSNMDIFPTVAKLAGAPLPEDRIIDGRDLMPLLEGKSQRSDHE 419
Query: 380 EILHNIDNVDNPQKYYAALRVDDLKYVAGTDNNGQSDEWYGDTDNEIDKYSPKE 433
+ H + N +++ K T N + +
Sbjct: 420 FLFHYCNAYLNAVRWHPQNSTSIWKAFFFTPNFNPVGSNGCFATHVCFCFGSYV 473
Score = 49.7 bits (118), Expect = 2e-06
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 490 YDNKGAHCNSTVKPCLFNITDDPCEQNNLAESQTD----LLKQLEDKLAIYKSTMVPPGN 545
G++ P LF+I+ DP E+N L + +LK +++ + T+ +
Sbjct: 466 CFCFGSYVTHHDPPLLFDISKDPRERNPLTPASEPRFYEILKVMQEAADRHTQTLPEVPD 525
Query: 546 KPFDKRADPARWNNIWVPW 564
+ + N +W PW
Sbjct: 526 Q-------FSWNNFLWKPW 537
>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint
center for structural genomics, JCSG; HET: EPE; 2.40A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 482
Score = 239 bits (612), Expect = 2e-72
Identities = 91/493 (18%), Positives = 142/493 (28%), Gaps = 111/493 (22%)
Query: 24 TTAPKKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYVQ-ALCTPSRS 82
A +KP+ +II D L V +G +Q T ID +A G+I + YV L PSR+
Sbjct: 11 AQAQEKPNFLIIQCDHLTQRVVGAYGQTQGCTLPIDEVASRGVIFSNAYVGCPLSQPSRA 70
Query: 83 ALMTGKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFREVYT 142
AL +G P + E LP L E+GY GK H
Sbjct: 71 ALWSGMMPHQTNV-RSNSSEPVNTRLPENVPTLGSLFSESGYEAVHFGKTHDM------- 122
Query: 143 PTFRGFDSHYGYWQGLQDYYDHSCKATFEPYQGLDMRHNMQVDNKTIGIYSTDLYTEAAI 202
G + + + + + + N + E A+
Sbjct: 123 ----GSLRGFKHKEPVAKPFTD-----------PEFPVNN-------DSFLDVGTCEDAV 160
Query: 203 NVIAEHNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPE------------- 249
++ K +P H E D
Sbjct: 161 AYLSNPPK-EPFICIADFQNPHN-----ICGFIGENAGVHTDRPISGPLPELPDNFDVED 214
Query: 250 --------------------------------RRTYAGMVSRLDESVGNVIAALRKHGML 277
+ + + V +V+ AL
Sbjct: 215 WSNIPTPVQYICCSHRRMTQAAHWNEENYRHYIAAFQHYTKMVSKQVDSVLKALYSTPAG 274
Query: 278 ENSIVLFMADNGAPSFGIHSNKGSNHPLRGMKSTPWDGGMRGVAAIWS-PWLKQTQKVSS 336
N+IV+ MAD+G +H + + +D V I++ P +KQ +K
Sbjct: 275 RNTIVVIMADHG-DGMA-------SHRMVTKHISFYDEMTN-VPFIFAGPGIKQQKKPVD 325
Query: 337 ELFHIS--DWLPTLCAAAGIEINDTSLDGVNQWDVLTKGAKTKRSEIL--HNIDNVDNPQ 392
L D LPTLC AGI + G++ L + K + +
Sbjct: 326 HLLTQPTLDLLPTLCDLAGIAVPAE-KAGISLAPTLRGEKQKKSHPYVVSEWHSEYEYVT 384
Query: 393 KYYAALRVDDLKYVAGTDNNGQSDEWYGDTDNEIDKYSPKEV--LYSK---AGITFNALK 447
+R KY G +E Y D + D P E L + I +
Sbjct: 385 TPGRMVRGPRYKYTH--YLEGNGEELY---DMKKD---PGERKNLAKDPKYSKIL-AEHR 435
Query: 448 TKLQIKQKHAADP 460
L + D
Sbjct: 436 ALLDDYITRSKDD 448
Score = 42.3 bits (100), Expect = 4e-04
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 505 LFNITDDPCEQNNLAES--QTDLLKQLEDKLAIYKSTMVPPGNKPFDKRADPARWNNIWV 562
L+++ DP E+ NLA+ + +L + L + + + D
Sbjct: 408 LYDMKKDPGERKNLAKDPKYSKILAEHRALL---DDYITRSKDDYRSLKVDADPRCRNHT 464
Query: 563 PWYDELDKQKAIETMR 578
P Y + A E ++
Sbjct: 465 PGYPSHEGPGAREILK 480
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase,
plasmid, formylglycine, phosphodiesterase; 1.42A
{Rhizobium leguminosarum BV} PDB: 2w8s_A
Length = 543
Score = 184 bits (470), Expect = 1e-51
Identities = 80/492 (16%), Positives = 150/492 (30%), Gaps = 128/492 (26%)
Query: 25 TAPKKPHIIIILADDLGWNDVSFHGS-----SQIPTPNIDALAYNGLILNQHYVQ-ALCT 78
++ +K ++++I+ D + V + TPN+D L G+ H
Sbjct: 28 SSMRKKNVLLIVVDQWRADFVPHVLRADGKIDFLKTPNLDRLCREGVTFRNHVTTCVPXG 87
Query: 79 PSRSALMTGKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFR 138
P+R++L+TG Y M H + P L L + L+ GY IG
Sbjct: 88 PARASLLTGLYL----MNHRAVQNTVP--LDQRHLNLGKALRGVGYDPALIGYTTTVPDP 141
Query: 139 EVYTPTFRGFDSHYGYWQGLQ----------DYYDH-SCKATFEPYQGLDMRHNMQVDNK 187
+P F G Y+ + P D+ D
Sbjct: 142 RTTSPNDPRFRVLGDLMDGFHPVGAFEPNMEGYFGWVAQNGFDLPEHRPDIWLPEGEDAV 201
Query: 188 TIGI----------YSTDLYTEAAINVIAEHNKSKPMFLYLAHLAVHAGNTYEPFQAP-- 235
+ +TE A+ + KP FL+L + H PF A
Sbjct: 202 AGATDRPSRIPKEFSDSTFFTERALTYLKGR-DGKPFFLHLGYYRPHP-----PFVASAP 255
Query: 236 ------DEEVAKFLDISDPE---------------------------------------- 249
E++ + ++P+
Sbjct: 256 YHAMYRPEDMPAPIRAANPDIEAAQHPLMKFYVDSIRRGSFFQGAEGSGATLDEAELRQM 315
Query: 250 RRTYAGMVSRLDESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLRGM- 308
R TY G+++ +D+ +G V + L + G ++++++F +D+G G H +
Sbjct: 316 RATYCGLITEVDDCLGRVFSYLDETGQWDDTLIIFTSDHGE-QLGDH----------HLL 364
Query: 309 -KSTPWDGGMRGVAAIWSPWLKQTQK--VSSELFHISDWLPTLCAAAGIEINDTSLDGVN 365
K D R + + + + + S D +PT+ G +I DG++
Sbjct: 365 GKIGYNDPSFR-IPLVIKDAGENARAGAIESGFTESIDVMPTILDWLGGKIPHA-CDGLS 422
Query: 366 QWDVLTKGAKTKRSEILH--------------NIDNVDNPQKYYAALRVDDLKYVAGTDN 411
L++G LH + + ++ + KYV
Sbjct: 423 LLPFLSEGRPQDWRTELHYEYDFRDVYYSEPQSFLGLGMNDCSLCVIQDERYKYV----- 477
Query: 412 NGQSDEWYGDTD 423
+
Sbjct: 478 -----HFAALPP 484
Score = 30.1 bits (68), Expect = 2.5
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 505 LFNITDDPCEQNNLAES--QTDLLKQLEDKLA 534
F++ DP E NLA+ L++ K
Sbjct: 486 FFDLRHDPNEFTNLADDPAYAALVRDYAQKAL 517
>2w8d_A Processed glycerol phosphate lipoteichoic acid SY; transferase,
phosphatase, cell membrane, transmembrane, LTA,
membrane, secreted, cell WALL; HET: TPO PG4; 2.35A
{Bacillus subtilis}
Length = 436
Score = 83.4 bits (206), Expect = 3e-17
Identities = 66/430 (15%), Positives = 134/430 (31%), Gaps = 59/430 (13%)
Query: 24 TTAPKKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYN--GLILNQHYVQALCTPSR 81
+ ++I + + L + + + TP ++ LA++ + + Q +
Sbjct: 26 FGKAEGKNVIYVSLESLQSFIIDYKIDGKEVTPFLNKLAHDNETFYFDNFFHQTGQGKTS 85
Query: 82 SALM---TGKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFR 138
A YP+ G + + + +P LK Y + H
Sbjct: 86 DAEFMMENSLYPL----AQGSVFVNKAQNTLQS---VPAILKSKNYTSATF---H----- 130
Query: 139 EVYTPTFRGFDSHYGYWQGLQDYYDHSCKATFEPYQGLDMRHNMQVDNKTIGIYSTDLYT 198
T TF + Y G+ ++D + E K G+ +
Sbjct: 131 -GNTQTFWNRNEMYKAE-GIDKFFDSAYYDMNEEN------------TKNYGMKDKPFFK 176
Query: 199 EAAINVIAEHNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEV-AKFLDISDPERRTYAGMV 257
E+ + ++ + +P + L+ H PF + + D D Y
Sbjct: 177 ES-MPLL--ESLPQPFYTKFITLSNH-----FPFGMDEGDTDFPAGDFGDSVVDNYFQSA 228
Query: 258 SRLDESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLRGMKSTPWDGGM 317
LD+S+ L+K G+ + SI++ D+ S + +
Sbjct: 229 HYLDQSIEQFFNDLKKDGLYDKSIIVMYGDHYGISENHNKAMAKVLGKDEITDYDNAQLQ 288
Query: 318 RGVAAIWSPWLKQTQKVSSELFHISDWLPTLCAAAGIEINDTSLDGVNQWDVLTKGAKTK 377
R I + +K + + D PT+ G++ D + G D+L+K + +
Sbjct: 289 RVPLFIHAAGVK--GEKVHKYAGDVDVAPTILHLLGVDTKDYLMSGS---DILSK--EHR 341
Query: 378 RSEILHNIDNVDNPQKYYAALRVDDLKYVAGTDNNGQSDEWYGDTDNEIDKYSPKEVLYS 437
N D + + D ++ + D D KE+ S
Sbjct: 342 EVIPFRNGDFISPKYTKISGKYYDTKTGKELDES---------EVDKSEDSLVKKELEMS 392
Query: 438 KAGITFNALK 447
I + L+
Sbjct: 393 DKIINGDLLR 402
>3lxq_A Uncharacterized protein VP1736; alkaline, phosphatase, MDOB,
sulfatase, PSI, MCSG, structural genomics; 1.95A {Vibrio
parahaemolyticus}
Length = 450
Score = 80.3 bits (198), Expect = 3e-16
Identities = 63/341 (18%), Positives = 113/341 (33%), Gaps = 60/341 (17%)
Query: 24 TTAPKKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYVQALCT-PSRS 82
T K+ +++I+L + LG V G + TPN+D L G Q Y +
Sbjct: 80 TYQGKRKNLVILLQESLGAQFVGSLGGLPL-TPNLDELMQEGWQFTQMYATGTRSVRGIE 138
Query: 83 ALMTGKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFREVYT 142
A+ TG P V+ + T + LKE GY T I + G
Sbjct: 139 AVTTGFPPS---PSRAVVKLSKSQTGFFT---IADLLKEQGYHTQFI---YGG------E 183
Query: 143 PTFRGFDSHYGYWQGLQDYYDHSCKATFEPYQGLDMRHNMQVDNKTIGIYSTDLYTEAAI 202
F + + G + + + + + G+ DLY +A
Sbjct: 184 ANFDNMKTFFFGN-GFDQIVE---EKNYTNPGFVG----------SWGVSDEDLYNKADE 229
Query: 203 NVIAEHNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPERRTYAGMVSRLDE 262
KP F + + H P++ P+ ++ ++ D E T V D
Sbjct: 230 EFERLSKGDKPFFSLVFTSSNH-----SPYEYPEGKIEQY----DSEHMTRNNAVKYSDY 280
Query: 263 SVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNH--PLRGMKSTPWDGGMRGV 320
++G +K +++I + +AD+ A FG + + P
Sbjct: 281 ALGTFFDKAKKSSYWDDTIFIVIADHDARVFGANLVPVKHFHIPA--------------- 325
Query: 321 AAIWSPWLKQTQKVSSELFHISDWLPTLCAAAGIEINDTSL 361
I + + + D PTL + G++ +
Sbjct: 326 -LIIGK--DIQPRKDDRIANNIDMPPTLLSLIGVDAKTPMI 363
>2w5q_A Processed glycerol phosphate lipoteichoic acid synthase;
transmembrane, cell WALL biogenesis/degradation, LTAS,
membrane, secreted; 1.20A {Staphylococcus aureus} PDB:
2w5s_A* 2w5t_A* 2w5r_A*
Length = 424
Score = 74.9 bits (184), Expect = 2e-14
Identities = 73/434 (16%), Positives = 146/434 (33%), Gaps = 69/434 (15%)
Query: 26 APKKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALA---YNGLILNQHYVQALCTPSRS 82
KK +II I + ++ + + TP ++ L+ + Q +
Sbjct: 26 VAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSD 85
Query: 83 A---LMTGKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFRE 139
+ + Y + G + + L ++ GY + + H
Sbjct: 86 SEFTMDNSLYGL----PQGSAFSLKGD--NTYQSLPAILDQKQGYKSDVM---H------ 130
Query: 140 VYTPTFRGFDSHYGYWQGLQDYYDHSCKATFEPYQGLDMRHNMQVDNKTIGIYSTDLYTE 199
TF D Y ++ G+ +YD + + +G+ + +
Sbjct: 131 GDYKTFWNRDQVYKHF-GIDKFYDAT-----------YY-DMSDKNVVNLGLKDKIFFKD 177
Query: 200 AAINVIAEHNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFL-DISDPERRTYAGMVS 258
+ N A+ P + +L L H PF +++ + D Y
Sbjct: 178 S-ANYQAKMKS--PFYSHLITLTNH-----YPFTLDEKDATIEKSNTGDATVDGYIQTAR 229
Query: 259 RLDESVGNVIAALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLRGMKSTPWD--GG 316
LDE++ I L+K G+ +NS+++ D+ S ++ + L G K TP
Sbjct: 230 YLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISE---NHNNAMEKLLGEKITPAKFTDL 286
Query: 317 MRGVAAIWSPWLKQTQKVSSELFHISDWLPTLCAAAGIEINDTSLDGVNQWDVLTKGAKT 376
R I P +++E D +PT+ AGI+ + + G D+ +K
Sbjct: 287 NRTGFWIKIPGKS--GGINNEYAGQVDVMPTILHLAGIDTKNYLMFGT---DLFSK--GH 339
Query: 377 KRSEILHNIDNVDNPQKYYAALRVDDLKYVAGTDNNGQSDEWYGDTDNEIDKYSP---KE 433
+ N D + D KYV G + +++E + +K K+
Sbjct: 340 NQVVPFRNGDFIT-----------KDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKD 388
Query: 434 VLYSKAGITFNALK 447
+ S + + +
Sbjct: 389 LEMSDNVLNGDLFR 402
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.5 bits (167), Expect = 4e-12
Identities = 100/577 (17%), Positives = 169/577 (29%), Gaps = 217/577 (37%)
Query: 48 HGSSQ--IPTPNIDALAYNGLILNQHYVQALCTPSRSALMTGKYPIHIGMQHGVILEGEP 105
HGS + + P A + L + + + L P+ G + EP
Sbjct: 13 HGSLEHVLLVPT--ASFFIASQLQEQFNKILPEPTE----------------GFAADDEP 54
Query: 106 WGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFREVYTPTFRGFDSHYGYWQGLQDYYD-H 164
+L+ ++L GY + + +G F +V F++ Y L+ D H
Sbjct: 55 TTPA---ELVGKFL---GYVSSLVEPSKVGQFDQVLNLCLTEFENCY-----LEG-NDIH 102
Query: 165 SCKATFEPYQGLDMRHNMQVDNKTIGIYSTDL---YTEAAINVIAEHNKSKPMFLYLAHL 221
+ A +N T + + +L Y A I +K L+ A
Sbjct: 103 ALAAKLLQ------------ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 222 AVHA---------GNTYEPFQAPDEEVAKFLDISDPERRTYAGMVSRLDESVGNVIAALR 272
+A GNT + F EE+ TY +V L + ++ L
Sbjct: 151 EGNAQLVAIFGGQGNTDDYF----EELRDLYQ-------TYHVLVGDLIKFSAETLSELI 199
Query: 273 K----------HGM-----LENSI----VLFMADNGAP-SFGIHSNKGSNHPL------- 305
+ G+ LEN ++ P S PL
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL--SIPISC----------PLIGVIQLA 247
Query: 306 ------RGMKSTPWD--GGMRG--------VAAI-------WSPWLKQTQKVSSELFHI- 341
+ + TP + ++G V A+ W + +K + LF I
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 342 ---SDWLPTLCAAAGI-----EINDT------SLDGVNQWDVLTKGAKT-------KRSE 380
+ P I E N+ S+ + Q V KT K+ E
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 381 I-LHNIDNVDNPQKYYAALRVDDLKYVAGTDNNGQSDEWYGDTDNEIDKYSPKEVLYSKA 439
I L N + V V+G P + LY
Sbjct: 368 ISLVN-----GAKNL-----V-----VSG----------------------PPQSLY--- 387
Query: 440 GITFNALKTKLQIKQKHAADPKANSSDALRTILTDEKILELREFARVRCNYDNKGAHCNS 499
L L +K A + S R ++ K+ F V + H
Sbjct: 388 -----GLNLTL---RKAKAPSGLDQS---RIPFSERKLKFSNRFLPVASPF-----HS-H 430
Query: 500 TVKPCLFNITDDPCEQNNLAESQTDLLKQLEDKLAIY 536
+ P I D +NN++ + D+ ++ +Y
Sbjct: 431 LLVPASDLINKD-LVKNNVSFNAKDI------QIPVY 460
Score = 42.3 bits (99), Expect = 4e-04
Identities = 39/174 (22%), Positives = 56/174 (32%), Gaps = 62/174 (35%)
Query: 5 RKYFFALTCTLLFNDAFLNTTAPKKPH------IIIILADDLGWNDVSFHGSS-QIP--- 54
RK L F++ FL +P H ++ DL N+VSF+ QIP
Sbjct: 412 RK--------LKFSNRFLPVASPF--HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 55 TPN-IDALAYNGLILNQHYVQALCTPSRSALMTGKYPIH------IGMQHGVILE---GE 104
T + D +G I + V + P+ H IL+ G
Sbjct: 462 TFDGSDLRVLSGSISERI-VDCIIR----------LPVKWETTTQFKATH--ILDFGPGG 508
Query: 105 PWGL-PLTEKLLPQYLKEAGYATHAIGKWHLGFFREVYTPTF-RGFDSHYGYWQ 156
GL LT + K+ G R + T D YG+ Q
Sbjct: 509 ASGLGVLTHR-----NKD--------GTG----VRVIVAGTLDINPDDDYGFKQ 545
Score = 42.3 bits (99), Expect = 5e-04
Identities = 40/227 (17%), Positives = 69/227 (30%), Gaps = 80/227 (35%)
Query: 300 GSNHPLRGMKSTPWDGGMRGVAAIWSPWLKQTQKVSSELFHISDWLPTLCAAAGIEINDT 359
GS GM GM L +T K + ++++ +D G I D
Sbjct: 1625 GSQEQ--GM-------GMD---------LYKTSKAAQDVWNRADNH--FKDTYGFSILDI 1664
Query: 360 SLDGVNQWDVLTKGAKTKRSEILHNIDNVDNPQKYYAALRVDDLKYVAGTDNNGQSDEWY 419
++ + G K KR I N Y+A+ + D ++++ +
Sbjct: 1665 VINNPVNLTIHFGGEKGKR--IREN----------YSAM-----IFETIVDGKLKTEKIF 1707
Query: 420 GDTDNEIDKY---SPKEVLY------------SKAGITFNALKTKLQIKQK-----H--- 456
+ + Y S K +L KA F LK+K I H
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA--AFEDLKSKGLIPADATFAGHSLG 1765
Query: 457 -----AADPKANS---SDALRTILTDEKILELR-EFARVRCNYDNKG 494
A+ A+ + +++ R +V D G
Sbjct: 1766 EYAALAS--LADVMSIESLV-------EVVFYRGMTMQVAVPRDELG 1803
>1ei6_A Phosphonoacetate hydrolase; zinc,; HET: TLA; 2.10A {Pseudomonas
fluorescens} SCOP: c.76.1.4
Length = 406
Score = 59.9 bits (144), Expect = 9e-10
Identities = 49/327 (14%), Positives = 92/327 (28%), Gaps = 27/327 (8%)
Query: 23 NTTAPKKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYV-QALCTPSR 81
+ I+I D ++ P + L G +L V + P+
Sbjct: 9 RSYRLSSAPTIVICVDGCEQEYIN-QAIQAGQAPFLAELTGFGTVLTGDCVVPSFTNPNN 67
Query: 82 SALMTGKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFREVY 141
+++TG P HG I + E++L K T G V
Sbjct: 68 LSIVTGAPPSV----HG-ICGNFFFDQETQEEVLMNDAKYLRAPTILAEMAKAGQLVAVV 122
Query: 142 TPTFRGFDSHYGYWQGLQDYYDHSCKATFEPYQGLDMRHNMQVDNKTIGIYSTDLYTEAA 201
T + + +G+ + + + E + ++ V +YS DL
Sbjct: 123 TAKDKLRNLLGHQLKGICFSAEKADQVNLEEHGVENILAR--VGMPVPSVYSADLSEFVF 180
Query: 202 INVIAEHNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPERRTYAGMVSRLD 261
++ +P F+YL+ + + + P E F + D R
Sbjct: 181 AAGLSLLTNERPDFMYLSTTD-YVQHKHAPG---TPEANAFYAMMD-------SYFKRYH 229
Query: 262 ESVGNVI-----AALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLRGMKSTPWDGG 316
E V K + +LF+ D +G + G
Sbjct: 230 EQGAIVAITADHGMNAKTDAIGRPNILFLQDLLDAQYGAQRTRVLLPITDPYVVHHGALG 289
Query: 317 MRGVAAIWSPWLKQTQKVSSELFHISD 343
A ++ + L I+
Sbjct: 290 --SYATVYLRDAVPQRDAIDFLAGIAG 314
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 5e-08
Identities = 82/569 (14%), Positives = 156/569 (27%), Gaps = 153/569 (26%)
Query: 35 ILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYVQALCTPSRSALMTGKYPIHIG 94
+L + + + P+ Y L ++ KY +
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRM--YI------EQRDRLYNDNQV---FAKYNVSRL 134
Query: 95 MQHGVILEGEPWGLPLTEKLLPQYLKEAGYAT-HA---IGKWHLGFFREVY--TPTFRGF 148
+ L L + L L+ A GK + +V
Sbjct: 135 QPY----------LKLRQAL--LELRPAKNVLIDGVLGSGKTWVAL--DVCLSYKVQCKM 180
Query: 149 DSHYGYWQGLQDYYDHSCKATFEPYQGLDMRHNMQVDNKTIGIYSTDLYTEAAINVIAEH 208
D +W L+ +S + E Q L + + +++ + L + +
Sbjct: 181 DFK-IFWLNLK--NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 209 NKSKP---MFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPERRTYAGMVSRLDESVG 265
KSKP L L ++ + + ++S + + +R + V
Sbjct: 238 LKSKPYENCLLVLLNVQ-------------NAKAWNAFNLSC---KIL--LTTR-FKQVT 278
Query: 266 NVI-AALRKHGMLENSIVLFMADNGAPSFGIHSNKGSNHPLRGMKSTPWDGGMRGVAAIW 324
+ + AA H L++ + D ++
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVK-------------------------------SLL 307
Query: 325 SPWLKQ-TQKVSSELFHISDWLPTLCAAAGIEINDTSLDGVNQWDVLTKGAKTKRSEILH 383
+L Q + E+ + P + I D G+ WD K + I+
Sbjct: 308 LKYLDCRPQDLPREVLTTN---PRRLSIIAESIRD----GLATWDNWKHVNCDKLTTIIE 360
Query: 384 NIDNVDNP---QKYYAALRV--DDLKYVAGTDNNGQSDEWYGDTDNEID-------KYS- 430
+ NV P +K + L V S W+ +++ KYS
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL----LSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 431 ----PKEVLYSKAGITFNALKTKLQIKQKHAA--------------DPKANSSDA----- 467
PKE S I H + D D
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 468 ----LRTILTDEKILELRE------FARVRCNYDNKGAHCNSTVKPCLFN-------ITD 510
L+ I E++ R F + +D+ + + ++ L I D
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 511 DPCEQNNLAESQTDLLKQLEDKLAIYKST 539
+ + L + D L ++E+ L K T
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYT 565
Score = 38.3 bits (88), Expect = 0.007
Identities = 64/414 (15%), Positives = 113/414 (27%), Gaps = 142/414 (34%)
Query: 236 DEEVAKFLDISDPERRTYAGMVSRLDESVGNVIAALRKHGMLENSIVLFMADNGAPSFGI 295
EE+ + D T RL L E + F+ + ++
Sbjct: 48 KEEIDHIIMSKDAVSGTL-----RL-------FWTLLSKQ--EEMVQKFVEEVLRINY-- 91
Query: 296 HSNKGSNHPLRGMKSTPWDGGMRGVAAIWSPWLKQTQKVSSELFHISDWLPTLCAAAGIE 355
+ + SP + ++ P++ IE
Sbjct: 92 ----------------KF---------LMSPIKTEQRQ------------PSMMTRMYIE 114
Query: 356 INDTSLDGVNQWDVLTKGAKTKRSEILHNIDNVDNPQKYYAALRVDDLKYV-----AGTD 410
D L NQ V K + R + + A L + K V G+
Sbjct: 115 QRD-RLYNDNQ--VFAKYNVS-RLQPYLKLRQ--------ALLELRPAKNVLIDGVLGS- 161
Query: 411 NNGQSDEWY-GDT--DNEIDKYSPKEVLYSKAGITFNALKTK---LQIKQK--HAADPKA 462
G++ W D ++ ++ + + + L++ QK + DP
Sbjct: 162 --GKT--WVALDVCLSYKVQCKMDFKIFW----LNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 463 NS-SDALRTI--LTDEKILELREFARVRCNY-------DNKGAHCNS-TVKP----C--L 505
S SD I ELR + + Y N N+ C L
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLLVLLNV---QNAKAWNAFNLSCKIL 269
Query: 506 F-----NITDD---------PCEQNNLAESQTDLLKQLEDKLAIYKSTMVPP----GNKP 547
+TD + +++ + ++ L L + +P N P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-RPQDLPREVLTTN-P 327
Query: 548 F-------DKRADPARWNNIWVPW-YDELDKQKAIETMRLHKPLLSPTTITLIY 593
R A W+N W + DK I L+ L P ++
Sbjct: 328 RRLSIIAESIRDGLATWDN----WKHVNCDKLTTIIESSLNV--LEPAEYRKMF 375
Score = 29.1 bits (64), Expect = 5.4
Identities = 27/173 (15%), Positives = 55/173 (31%), Gaps = 41/173 (23%)
Query: 421 DTDNEIDKYSPKEVLYSKAGITFNALKTKLQIKQKHAADPKANSSDALRTILTDE---KI 477
D + +Y K++L + +A K + D ++IL+ E I
Sbjct: 8 DFETGEHQYQYKDILS----VFEDAFVDNFDCK---------DVQDMPKSILSKEEIDHI 54
Query: 478 LELR-EFARVRCNYD---NKGAHCNSTVKPCLFNITDDPCEQNN--LAESQTDLLKQLED 531
+ + + + +K V+ F ++ N L +Q
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQ---EEMVQ--KF--VEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 532 KLAIYKSTMVPP--GNKPFDKRADPARWNNIW-VPWYDELDKQKAIETMRLHK 581
+Y N+ F K N+ + Y +L ++A+ +R K
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKY-------NVSRLQPYLKL--RQALLELRPAK 151
>3szy_A Phosphonoacetate hydrolase; alkaline phosphatase superfamily; 1.35A
{Sinorhizobium meliloti} PDB: 3szz_A 3t00_A 3t01_A
3t02_A
Length = 427
Score = 50.2 bits (119), Expect = 1e-06
Identities = 39/256 (15%), Positives = 75/256 (29%), Gaps = 26/256 (10%)
Query: 29 KPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYV-QALCTPSRSALMTG 87
+ I + D + P + + G + H V + P+ ++ TG
Sbjct: 23 RVPAIAVCLDGCEPAYLD-AAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATG 81
Query: 88 KYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFREVYT----- 142
P HG+ + E+++ K T + G V T
Sbjct: 82 SPPAV----HGIC-GNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKL 136
Query: 143 PTFRGFDSHYGYWQGLQDYYDHSCKATFEPYQGLDMRHNMQVDNKTIGIYSTDLYTEAAI 202
G + + + + S KAT + + + +YS L
Sbjct: 137 RALLGKGLRFDEGRAVCFSSEKSDKAT--RAEHGIDNASAWLGRPVPEVYSAALSEFVFA 194
Query: 203 NVIAEHNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPERRTYAGMVSRLDE 262
+ + +P +YL + + Y P E F ++ D ++ LD
Sbjct: 195 AGVKLLREFRPDIMYLTTTD-YVQHKYAPG---VPEANSFYEMFD-------RYLAELDG 243
Query: 263 SVGNVIAALRKHGMLE 278
++ HGM
Sbjct: 244 LGAAIV-VTADHGMKP 258
>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP,
hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB: 2gsn_A
2gsu_A* 2rh6_A*
Length = 393
Score = 45.5 bits (107), Expect = 3e-05
Identities = 44/266 (16%), Positives = 87/266 (32%), Gaps = 52/266 (19%)
Query: 25 TAPKKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYVQ--ALCTPSRS 82
+A +++I D L + + TPN+ LA G+ +L P+
Sbjct: 2 SASTPHALLLISIDGLRADMLDRG-----ITPNLSHLAREGVRARWMAPSYPSLTFPNHY 56
Query: 83 ALMTGKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLGFFREVYT 142
L+TG P H HG++ P + G A +W G V
Sbjct: 57 TLVTGLRPDH----HGIV-HNSMRD-PTLGGFWLSKSEAVGDA-----RWWGGEPVWV-G 104
Query: 143 PTFRGFDSHYGYWQGLQDYYDHSCKATFEPYQGLDMRHNMQVDNKTIGIYSTDLYTEAAI 202
G + W G + + + YQ +++D + +A
Sbjct: 105 VENTGQHAATWSWPGSEAAIKGVRPSQWRHYQ-----KGVRLDTR----------VDAVR 149
Query: 203 NVIAEHNKSKPMFLYLAHLAV-HAGNTYEPFQAPDEEVAKFLDISDPERRTYAGMVSRLD 261
+A + + L V AG+ + P + V +D
Sbjct: 150 GWLATDGAQRNRLVTLYFEHVDEAGHDHGP--------------ESRQYAD---AVRAVD 192
Query: 262 ESVGNVIAALRKHGMLENSIVLFMAD 287
++G ++A +++ G + ++ ++D
Sbjct: 193 AAIGRLLAGMQRDGTRARTNIIVVSD 218
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.1 bits (95), Expect = 2e-04
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 270 ALRKHGMLENSIVLFMADNGAPSFGIHSN 298
AL+K L+ S+ L+ AD+ AP+ I +
Sbjct: 21 ALKK---LQASLKLY-ADDSAPALAIKAT 45
Score = 38.0 bits (87), Expect = 0.002
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 7/28 (25%)
Query: 520 ESQTDLLKQLEDKLAIYKSTMVPPGNKP 547
E Q LK+L+ L +Y + P
Sbjct: 18 EKQA--LKKLQASLKLYA-----DDSAP 38
Score = 33.4 bits (75), Expect = 0.10
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 329 KQT-QKVSSEL-FHISDWLPTLCAAAGIE 355
KQ +K+ + L + D P L A +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 2.9
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 8/29 (27%)
Query: 569 DKQ--KAIE-TMRLHKPLLSP-----TTI 589
+KQ K ++ +++L+ +P T+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein
structure initiative; 2.20A
{Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Length = 157
Score = 34.3 bits (78), Expect = 0.049
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 213 PMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPERRTYAGMVSRLDESVGNVI 268
P+ +Y +H G + + + + ++DPE Y + L+ + +
Sbjct: 23 PLAIYTSHKLKKKG--FRVTVTANPAALRLVQVADPEGI-YTDEMVDLESCINELA 75
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 33.8 bits (76), Expect = 0.19
Identities = 42/272 (15%), Positives = 74/272 (27%), Gaps = 66/272 (24%)
Query: 18 NDAFLNTTAPKKPHIIIILADDLGWNDVSFHGSSQIPTPNIDALAYNGLILNQHYVQ--A 75
+P +II D + + PNI+ L G
Sbjct: 116 IRVPECPAGFVRPPLIIFSVDGFRASYMKKGSKV---MPNIEKLRSCGTHAPYMRPVYPT 172
Query: 76 LCTPSRSALMTGKYPIHIGMQHGVILEGEPWGLPLTEKLLPQYLKEAGYATHAIGKWHLG 135
P+ L TG YP HG++ G P+ + +E +W G
Sbjct: 173 KTFPNLYTLATGLYPES----HGIV--GNSMYDPVFDATFHLRGREKFN-----HRWWGG 221
Query: 136 FFREVYTPTFRGFDSHYGYWQGLQDYYDHSCKATFEPYQGLDMRHNMQVDNKTIGIYSTD 195
+ T T +G + +W + Q L + N + D
Sbjct: 222 QPLWI-TATKQGVRAGTFFWSVSIPHERRILTI----LQWLSLPDNERPSVYAFYSEQPD 276
Query: 196 LYTEAAINVIAEHNKSKPMFLYLAHLAVHAGNTYEPFQAPDEEVAKFLDISDPERRTYAG 255
+G+ Y P PE
Sbjct: 277 ----------------------------FSGHKYGP--------------FGPEMTN--- 291
Query: 256 MVSRLDESVGNVIAALRKHGMLENSIVLFMAD 287
+ +D++VG ++ L++ + V+F+ D
Sbjct: 292 PLREIDKTVGQLMDGLKQLKLHRCVNVIFVGD 323
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 33.4 bits (77), Expect = 0.20
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 233 QAPDEEVAKFLDISDPERRTYAGMVSRLDESVGNVIAALRKHGMLENSIVLFMADNG 289
+P+++ FL+ E TY +LD+ + A L+ G VL + G
Sbjct: 23 HSPNKKSCTFLNKELEETMTYE----QLDQHAKAIAATLQAEGAKPGDRVLLLFAPG 75
>3o2k_A Brevianamide F prenyltransferase; PT barrel; HET: DST QRP MES;
2.40A {Aspergillus fumigatus} PDB: 3o24_A*
Length = 474
Score = 30.2 bits (67), Expect = 1.8
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 114 LLPQYLKEAGYATHAIGKWHLGFFREVYTPTFRGFDSHYGYWQGLQDYYDHSCKATFEPY 173
+L + L + Y K +L +R + P + + + T P
Sbjct: 43 ILSRLLISSNYDVDVQYK-YLSLYRHLVLPALGPYPQRDPETGIIATQWRSGMVLTGLPI 101
Query: 174 Q 174
+
Sbjct: 102 E 102
>2vtw_A Fiber protein 2; viral protein, CELO, short fibre head; 2.00A {Fowl
adenovirus 1}
Length = 205
Score = 28.3 bits (62), Expect = 5.4
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 544 GNKPFDKRADPARWNNIWVPWYDELDKQKAIETMRLHKPLLSPTTITL 591
G +P + AR+ +WV + I L P+ I++
Sbjct: 58 GTRPTGAVNENARYFTVWVSSFLTQCNPSNIGQ-----GTLEPSNISM 100
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 28.6 bits (63), Expect = 7.8
Identities = 4/54 (7%), Positives = 15/54 (27%)
Query: 535 IYKSTMVPPGNKPFDKRADPARWNNIWVPWYDELDKQKAIETMRLHKPLLSPTT 588
+ V P F++ N ++ ++ + + + +
Sbjct: 118 VNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWY 171
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.420
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,412,931
Number of extensions: 580090
Number of successful extensions: 1149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1076
Number of HSP's successfully gapped: 55
Length of query: 593
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 494
Effective length of database: 3,937,614
Effective search space: 1945181316
Effective search space used: 1945181316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.4 bits)