BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10436
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 125/221 (56%), Gaps = 67/221 (30%)
Query: 7 IAVSIQPDKNLVS-----DAPKVDISNIKLSSPPSYKKGELVATRLAYGIGLAKLAASNS 61
I IQ K +++ DAP VDI+NI++ S PSYK G+ +ATR AYG LAKL ++
Sbjct: 272 IYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIATRKAYGQALAKLGHASD 331
Query: 62 RVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLG 121
R+IALDGDTKNSTFS+ KK
Sbjct: 332 RIIALDGDTKNSTFSEIFKKE--------------------------------------- 352
Query: 122 SSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRMGAI 167
+PDR+IEC+IAEQN+V +A+G A RNRTVPF IRM AI
Sbjct: 353 ---------HPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAI 403
Query: 168 SQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
S++N+N GSHCGVSIGEDGPSQMALED+AMFR++P VF
Sbjct: 404 SESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVF 444
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
Query: 77 DKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSAD 126
++L KAF Q K +PTA+IAKTFKG+ +EDKE WHGKPL + A+
Sbjct: 220 EELCKAF---GQAKHQPTAIIAKTFKGRGITGVEDKESWHGKPLPKNMAE 266
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 125/221 (56%), Gaps = 67/221 (30%)
Query: 7 IAVSIQPDKNLVS-----DAPKVDISNIKLSSPPSYKKGELVATRLAYGIGLAKLAASNS 61
I IQ K +++ DAP VDI+NI++ S PSYK G+ +ATR AYG LAKL ++
Sbjct: 270 IYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIATRKAYGQALAKLGHASD 329
Query: 62 RVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLG 121
R+IALDGDTKNSTFS+ KK
Sbjct: 330 RIIALDGDTKNSTFSEIFKKE--------------------------------------- 350
Query: 122 SSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRMGAI 167
+PDR+IEC+IAEQN+V +A+G A RNRTVPF IRM AI
Sbjct: 351 ---------HPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAI 401
Query: 168 SQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
S++N+N GSHCGVSIGEDGPSQMALED+AMFR++P VF
Sbjct: 402 SESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVF 442
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
Query: 77 DKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSAD 126
++L KAF Q K +PTA+IAKTFKG+ +EDKE WHGKPL + A+
Sbjct: 218 EELCKAF---GQAKHQPTAIIAKTFKGRGITGVEDKESWHGKPLPKNMAE 264
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 134 RYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRMGAISQTNVNFVGSHC 179
RYI + E + + G + +PF +R+ AIS V +V +H
Sbjct: 403 RYIRFGVREHAMCAILNGLDAHDGIIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHD 462
Query: 180 GVSIGEDGPSQMALEDIAMFRTIP 203
+ +GEDGP+ +E +A R +P
Sbjct: 463 SIGVGEDGPTHQPVELVAALRAMP 486
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 55 KLAASNSRVIAL-DGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKE 113
K A VI + +GDT + L+KA EA KGKP ++ T G + + E
Sbjct: 206 KYVAMGFHVIEVKNGDTDY----EGLRKALAEAKATKGKPKMIVQTTTIGFG-SSKQGTE 260
Query: 114 EWHGKPLGSSSADVLKA 130
+ HG PLG +KA
Sbjct: 261 KVHGAPLGEEDIANIKA 277
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 131 YPDRYIECFIAEQNLVGV-----AIGAACRNRTVPF----------IRMGAISQTNVNFV 175
Y RYI I E + + A GA + F +R+ A+S V +V
Sbjct: 407 YSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWV 466
Query: 176 GSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
+H + +GEDGP+ +E +A FR++P V+
Sbjct: 467 ATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVW 499
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 131 YPDRYIECFIAEQNLVGV-----AIGAACRNRTVPF----------IRMGAISQTNVNFV 175
Y RYI I E + + A GA + F +R+ A+S V +V
Sbjct: 407 YSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWV 466
Query: 176 GSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
+H + +GEDGP+ +E +A FR++P V+
Sbjct: 467 ATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVW 499
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 131 YPDRYIECFIAEQNLVGV-----AIGAACRNRTVPF----------IRMGAISQTNVNFV 175
Y RYI I E + + A GA + F +R+ A+S V +V
Sbjct: 405 YSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWV 464
Query: 176 GSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
+H + +GEDGP+ +E +A FR++P V+
Sbjct: 465 ATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVW 497
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
Length = 690
Score = 42.7 bits (99), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 160 PFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIP 203
P IR+ A+ Q V +V +H +++GEDGP+ +E +A R P
Sbjct: 468 PAIRLAALXQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAXP 511
Score = 33.9 bits (76), Expect = 0.072, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 25/110 (22%)
Query: 44 ATRLAYGIGLAKLAA-SNSRVIALDGDTKNSTFSDKLK---------------------- 80
A+ LA + L +L +S I+LDGD N +FS+ ++
Sbjct: 192 ASSLAAHLQLGRLVVLYDSNDISLDGDL-NRSFSESVEDRYKAYGWQVIRVEDGNDIEAI 250
Query: 81 -KAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLK 129
KA EA + +PT + +T G PN K HG PLG + K
Sbjct: 251 AKAIEEAKADEKRPTLIEVRTTIGFGSPNKSGKSASHGSPLGVEETKLTK 300
>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp
pdb|1ITZ|B Chain B, Maize Transketolase In Complex With Tpp
pdb|1ITZ|C Chain C, Maize Transketolase In Complex With Tpp
Length = 675
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 162 IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
+R+ A+S+ V +V +H + +GEDGP+ +E + FR +P L+
Sbjct: 458 MRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILML 504
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 24/110 (21%)
Query: 44 ATRLAYGIGLAKLAA-SNSRVIALDGDTK-----------------------NSTFSDKL 79
A LA GL KL A + I++DGDT+ +T D +
Sbjct: 179 ACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGYDDI 238
Query: 80 KKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLK 129
+ A EA V KPT + T G PN + HG LG+ + +
Sbjct: 239 RAAIKEAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATR 288
>pdb|3L84|A Chain A, High Resolution Crystal Structure Of Transketolase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 632
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 160 PFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
P R+ A+ + F+ +H + +GEDGP+ +E ++ FR P L F
Sbjct: 423 PAARIAALXKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAXPNFLTF 471
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 55 KLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEE 114
+ A V++++G +++ KA +A + KP +IAKT K +E +
Sbjct: 201 RFEAQGFEVLSINGHD-----YEEINKALEQAKKST-KPCLIIAKTTIAKGAGELEGSHK 254
Query: 115 WHGKPLG 121
HG PLG
Sbjct: 255 SHGAPLG 261
>pdb|3M7I|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form)
And Magnesium Ion
pdb|3M34|A Chain A, Crystal Structure Of Transketolase In Complex With Thiamin
D And Calcium Ion
pdb|3M6L|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate And Calcium Ion
Length = 635
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 160 PFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
P R+ A+ + F+ +H + +GEDGP+ +E ++ FR P L F
Sbjct: 426 PAARIAALXKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAXPNFLTF 474
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 55 KLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEE 114
+ A V++++G +++ KA +A + KP +IAKT K +E +
Sbjct: 204 RFEAQGFEVLSINGHD-----YEEINKALEQAKKST-KPCLIIAKTTIAKGAGELEGSHK 257
Query: 115 WHGKPLG 121
HG PLG
Sbjct: 258 SHGAPLG 264
>pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
Length = 700
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 160 PFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIP 203
P +R+ A+ + +V +H + +GEDGP+ +E ++ R IP
Sbjct: 473 PAVRLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEHLSALRAIP 516
Score = 28.5 bits (62), Expect = 2.7, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 79 LKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLK 129
+++A A V +P+ + +T G PN+ D + HG LG +K
Sbjct: 246 IEEAIANAQAVTDRPSFIALRTVIGYPAPNLMDTGKAHGAALGDDEVAAVK 296
>pdb|3KOM|A Chain A, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
pdb|3KOM|B Chain B, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
Length = 663
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 162 IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
IR A+ + V V SH + +GEDGP+ +E + R IP V+
Sbjct: 446 IRXSALXKQPVVHVXSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVW 492
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 25/101 (24%)
Query: 44 ATRLAYGIGLAKLAA-SNSRVIALDGDTKNSTFSDK-----------------------L 79
A LA +GL KL A + I++DGDTK FSD +
Sbjct: 168 ACSLAGTLGLNKLVAFWDDNNISIDGDTK-GWFSDNTPERFRAYGWHVIENVDGHDFVAI 226
Query: 80 KKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPL 120
+KA +EA + KPT + KT G P HG PL
Sbjct: 227 EKAINEAHSQQQKPTLICCKTVIGFGSPEKAGTASVHGSPL 267
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 14/83 (16%)
Query: 135 YIECFIAEQNLVGVAIGAACRNRTVPF--------------IRMGAISQTNVNFVGSHCG 180
YI + E + +A G + +P+ +RM A+ + V +H
Sbjct: 404 YIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDS 463
Query: 181 VSIGEDGPSQMALEDIAMFRTIP 203
+ +GEDGP+ +E +A R P
Sbjct: 464 IGLGEDGPTHQPVEQVASLRVTP 486
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 79 LKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSS 123
+K+A EA V KP+ L+ KT G PN + HG PLG +
Sbjct: 224 IKRAVEEARAVTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDA 268
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 14/83 (16%)
Query: 135 YIECFIAEQNLVGVAIGAACRNRTVPF--------------IRMGAISQTNVNFVGSHCG 180
YI + E + +A G + +P+ +RM A+ + V +H
Sbjct: 403 YIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDS 462
Query: 181 VSIGEDGPSQMALEDIAMFRTIP 203
+ +GEDGP+ +E +A R P
Sbjct: 463 IGLGEDGPTHQPVEQVASLRVTP 485
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 79 LKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSS 123
+K+A EA V KP+ L+ KT G PN + HG PLG +
Sbjct: 223 IKRAVEEARAVTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDA 267
>pdb|3UK1|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
pdb|3UK1|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
Length = 711
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 162 IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
+R+ A+ + FV +H + +GEDGP+ ++E +A R IP V+
Sbjct: 491 LRVAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVW 537
>pdb|3UPT|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
pdb|3UPT|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
Length = 711
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 162 IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
+R+ A+ + FV +H + +GEDGP+ ++E +A R IP V+
Sbjct: 491 LRVAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVW 537
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 121 GSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRN-RTV-----PFIRMG--------A 166
GS + + +P RY++ IAE+ V A G A + R V F++ A
Sbjct: 352 GSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIYSTFLQRAYDQVLHDVA 411
Query: 167 ISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLV 207
I NV F G+ +G DG + + D++ R+IP +
Sbjct: 412 IEHLNVTFCIDRAGI-VGADGATHNGVFDLSFLRSIPGVRI 451
>pdb|2E6K|A Chain A, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|B Chain B, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|C Chain C, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|D Chain D, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
Length = 651
Score = 37.4 bits (85), Expect = 0.006, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 160 PFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLV 207
P IR+ A+ FV +H +++GEDGP+ +E + R P V
Sbjct: 438 PAIRLAALXGVPTVFVFTHDSIALGEDGPTHQPVEHLXSLRAXPNLFV 485
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 15/101 (14%)
Query: 121 GSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRT------VPFIRMG--------A 166
GS + + +PDRY + IAEQ+ V A G A F++ A
Sbjct: 349 GSGXVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAYDQVLHDVA 408
Query: 167 ISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLV 207
I + V F G+ +G DG + D++ R IP ++
Sbjct: 409 IQKLPVLFAIDRAGI-VGADGQTHQGAFDLSYLRCIPEXVI 448
>pdb|1ZH0|A Chain A, Crystal Structure Of L-3-(2-Napthyl)alanine-Trna
Synthetase In Complex With L-3-(2-Napthyl)alanine
Length = 314
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIED 111
G K+++S IA+D + K+KKA+ A V+G P IAK F ++P
Sbjct: 201 GEGKMSSSKGNFIAVDDSPEE--IRAKIKKAYCPAGVVEGNPIMEIAKYF--LEYPLTIK 256
Query: 112 KEEWHGKPLGSSSADVLKA 130
+ E G L +S + L++
Sbjct: 257 RPEKFGGDLTVNSYEELES 275
>pdb|3D6U|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
pdb|3D6V|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
Length = 314
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIED 111
G K+++S IA+D + K+KKA+ A V+G P IAK F ++P
Sbjct: 201 GEGKMSSSKGNFIAVDDSPEE--IRAKIKKAYCPAGVVEGNPIMEIAKYF--LEYPLTIK 256
Query: 112 KEEWHGKPLGSSSADVLKA 130
+ E G L +S + L++
Sbjct: 257 RPEKFGGDLTVNSYEELES 275
>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
pdb|3N2Y|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
Length = 314
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIED 111
G K+++S IA+D + K+KKA+ A V+G P IAK F ++P
Sbjct: 201 GEGKMSSSKGNFIAVDDSPEE--IRAKIKKAYCPAGVVEGNPIMEIAKYF--LEYPLTIK 256
Query: 112 KEEWHGKPLGSSSADVLKA 130
+ E G L +S + L++
Sbjct: 257 RPEKFGGDLTVNSYEELES 275
>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
pdb|1U7X|B Chain B, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
Length = 312
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIED 111
G K+++S IA+D + K+KKA+ A V+G P IAK F ++P
Sbjct: 201 GEGKMSSSKGNFIAVDDSPEE--IRAKIKKAYCPAGVVEGNPIMEIAKYF--LEYPLTIK 256
Query: 112 KEEWHGKPLGSSSADVLKA 130
+ E G L +S + L++
Sbjct: 257 RPEKFGGDLTVNSYEELES 275
>pdb|2ZP1|A Chain A, Structual Basis Of Iodo-Tyrosine Recognition By Engineered
Archeal Tyrosyl-Trna Synthetase
Length = 314
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIED 111
G K+++S IA+D + K+KKA+ A V+G P IAK F ++P
Sbjct: 201 GEGKMSSSKGNFIAVDDSPEE--IRAKIKKAYCPAGVVEGNPIMEIAKYF--LEYPLTIK 256
Query: 112 KEEWHGKPLGSSSADVLKA 130
+ E G L +S + L++
Sbjct: 257 RPEKFGGDLTVNSYEELES 275
>pdb|1ZH6|A Chain A, Crystal Structure Of P-Acetylphenylalanine-Trna Synthetase
In Complex With P-Acetylphenylalanine
Length = 314
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIED 111
G K+++S IA+D + K+KKA+ A V+G P IAK F ++P
Sbjct: 201 GEGKMSSSKGNFIAVDDSPEE--IRAKIKKAYCPAGVVEGNPIMEIAKYF--LEYPLTIK 256
Query: 112 KEEWHGKPLGSSSADVLKA 130
+ E G L +S + L++
Sbjct: 257 RPEKFGGDLTVNSYEELES 275
>pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase
Complexed With Trna(Tyr) And L-Tyrosine
pdb|1U7D|A Chain A, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
pdb|1U7D|B Chain B, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
Length = 306
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIED 111
G K+++S IA+D + K+KKA+ A V+G P IAK F ++P
Sbjct: 201 GEGKMSSSKGNFIAVDDSPEE--IRAKIKKAYCPAGVVEGNPIMEIAKYF--LEYPLTIK 256
Query: 112 KEEWHGKPLGSSSADVLKA 130
+ E G L +S + L++
Sbjct: 257 RPEKFGGDLTVNSYEELES 275
>pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna
Sythetase In Complex With P-Bromo-L-Phenylalanine
Length = 314
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIED 111
G K+++S IA+D + K+KKA+ A V+G P IAK F ++P
Sbjct: 201 GEGKMSSSKGNFIAVDDSPEE--IRAKIKKAYCPAGVVEGNPIMEIAKYF--LEYPLTIK 256
Query: 112 KEEWHGKPLGSSSADVLKA 130
+ E G L +S + L++
Sbjct: 257 RPEKFGGDLTVNSYEELES 275
>pdb|3LQ2|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ2|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ4|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
pdb|3LQ4|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
Length = 886
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 78 KLKKAFHEASQVKGKPTALIAKTFKG 103
K+ AF +A + KGK T ++A T KG
Sbjct: 368 KIYAAFKKAQETKGKATVILAHTIKG 393
>pdb|3LPL|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
pdb|3LPL|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
Length = 886
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 78 KLKKAFHEASQVKGKPTALIAKTFKG 103
K+ AF +A + KGK T ++A T KG
Sbjct: 368 KIYAAFKKAQETKGKATVILAHTIKG 393
>pdb|2QTA|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTA|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTC|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
pdb|2QTC|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
Length = 886
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 78 KLKKAFHEASQVKGKPTALIAKTFKG 103
K+ AF +A + KGK T ++A T KG
Sbjct: 368 KIYAAFKKAQETKGKATVILAHTIKG 393
>pdb|1L8A|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|1L8A|B Chain B, E. Coli Pyruvate Dehydrogenase
pdb|1RP7|A Chain A, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|1RP7|B Chain B, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|2G25|A Chain A, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G25|B Chain B, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G28|A Chain A, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G28|B Chain B, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G67|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2G67|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2IEA|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|2IEA|B Chain B, E. Coli Pyruvate Dehydrogenase
Length = 886
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 78 KLKKAFHEASQVKGKPTALIAKTFKG 103
K+ AF +A + KGK T ++A T KG
Sbjct: 368 KIYAAFKKAQETKGKATVILAHTIKG 393
>pdb|2PXH|A Chain A, Crystal Structure Of A Bipyridylalanyl-Trna Synthetase
Length = 314
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIED 111
G K+++S IA+D + K+KKA+ A V+G P IAK F ++P
Sbjct: 201 GEGKMSSSKGNFIAVDDSPEE--IRAKIKKAYCPAGVVEGNPIMEIAKYF--LEYPLTIK 256
Query: 112 KEEWHGKPLGSSSADVLKA 130
+ E G L +S + L++
Sbjct: 257 RPEKFGGDLTVNSYEELES 275
>pdb|3QE4|A Chain A, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
pdb|3QE4|B Chain B, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
Length = 312
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIED 111
G K+++S IA+D + K+KKA+ A V+G P IAK F ++P
Sbjct: 201 GEGKMSSSKGNFIAVDDSPEE--IRAKIKKAYCPAGVVEGNPIMEIAKYF--LEYPLTIK 256
Query: 112 KEEWHGKPLGSSSADVLKA 130
+ E G L +S + L++
Sbjct: 257 RPEKFGGDLTVNSYEELES 275
>pdb|2HGZ|A Chain A, Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trna
Synthetase
Length = 306
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIED 111
G K+++S IA+D + K+KKA+ A V+G P IAK F ++P
Sbjct: 200 GEGKMSSSKGNFIAVDDSPEE--IRAKIKKAYCPAGVVEGNPIMEIAKYF--LEYPLTIK 255
Query: 112 KEEWHGKPLGSSSADVLKA 130
+ E G L +S + L++
Sbjct: 256 RPEKFGGDLTVNSYEELES 274
>pdb|3RAY|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Pr
Domain- Containing Protein 11
Length = 237
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 85 EASQVKGKPTALIAKTFKGKDFPNIEDKEEW-------HGKPLGSSSADVLKAYPDR 134
E ++KGK ++ K+F+ DF E +E+ HG P+ S V PDR
Sbjct: 9 EPKKLKGKRDLIVPKSFQQVDFWFCESCQEYFVDECPNHGPPVFVSDTPVPVGIPDR 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,787,078
Number of Sequences: 62578
Number of extensions: 224281
Number of successful extensions: 571
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 54
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)