Query psy10436
Match_columns 208
No_of_seqs 212 out of 1620
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 18:07:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12754 transketolase; Review 100.0 2.3E-44 4.9E-49 348.2 8.3 177 27-208 163-491 (663)
2 COG0021 TktA Transketolase [Ca 100.0 4.4E-44 9.6E-49 339.0 9.3 178 26-208 164-491 (663)
3 PRK12753 transketolase; Review 100.0 4.7E-44 1E-48 346.3 8.1 179 24-208 158-491 (663)
4 PLN02790 transketolase 100.0 3.9E-43 8.4E-48 339.6 8.3 176 27-208 154-482 (654)
5 KOG0523|consensus 100.0 1.1E-42 2.4E-47 326.7 10.7 177 26-208 157-451 (632)
6 PTZ00089 transketolase; Provis 100.0 5.9E-43 1.3E-47 338.6 8.6 176 27-208 165-492 (661)
7 PLN02234 1-deoxy-D-xylulose-5- 100.0 1.6E-42 3.5E-47 333.6 8.6 177 25-208 212-487 (641)
8 TIGR00232 tktlase_bact transke 100.0 5.4E-42 1.2E-46 331.6 9.4 180 24-208 154-485 (653)
9 PRK12571 1-deoxy-D-xylulose-5- 100.0 1.7E-41 3.6E-46 327.5 7.1 149 54-208 240-449 (641)
10 PLN02582 1-deoxy-D-xylulose-5- 100.0 5.5E-41 1.2E-45 324.9 8.3 148 55-208 277-486 (677)
11 COG1154 Dxs Deoxyxylulose-5-ph 100.0 2.9E-40 6.2E-45 311.7 10.2 147 55-208 238-446 (627)
12 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 2.5E-39 5.5E-44 311.3 7.4 146 56-208 234-440 (617)
13 PRK12315 1-deoxy-D-xylulose-5- 100.0 4.7E-38 1E-42 300.7 6.6 174 26-208 151-407 (581)
14 PRK05444 1-deoxy-D-xylulose-5- 100.0 1.9E-37 4E-42 296.2 7.1 175 26-208 156-409 (580)
15 PRK05899 transketolase; Review 100.0 9.4E-37 2E-41 293.5 9.1 179 24-208 162-456 (624)
16 TIGR03186 AKGDH_not_PDH alpha- 100.0 7.1E-37 1.5E-41 301.5 7.6 180 24-208 230-656 (889)
17 PRK09405 aceE pyruvate dehydro 100.0 8.9E-36 1.9E-40 293.8 8.4 180 24-208 236-661 (891)
18 PRK13012 2-oxoacid dehydrogena 100.0 1.9E-35 4.2E-40 292.1 9.0 180 24-208 244-669 (896)
19 PLN02225 1-deoxy-D-xylulose-5- 100.0 8.7E-35 1.9E-39 281.4 10.0 148 54-208 320-511 (701)
20 COG3958 Transketolase, C-termi 100.0 2.2E-32 4.8E-37 240.1 8.4 119 41-208 5-139 (312)
21 cd07033 TPP_PYR_DXS_TK_like Py 99.9 6.5E-25 1.4E-29 177.7 8.4 85 124-208 30-128 (156)
22 cd07036 TPP_PYR_E1-PDHc-beta_l 99.8 5.8E-21 1.3E-25 157.1 6.9 82 124-208 34-139 (167)
23 PF02779 Transket_pyr: Transke 99.8 4.2E-22 9.1E-27 164.2 -0.0 117 43-208 3-142 (178)
24 PLN02683 pyruvate dehydrogenas 99.8 1.7E-20 3.6E-25 170.7 8.9 119 43-208 27-169 (356)
25 CHL00144 odpB pyruvate dehydro 99.8 2.5E-20 5.4E-25 167.7 8.0 83 124-208 41-146 (327)
26 PRK09212 pyruvate dehydrogenas 99.8 2.7E-20 5.9E-25 167.4 8.1 82 125-208 42-146 (327)
27 PTZ00182 3-methyl-2-oxobutanat 99.8 7E-20 1.5E-24 166.6 9.1 128 35-208 27-177 (355)
28 PF00456 Transketolase_N: Tran 99.8 7.4E-21 1.6E-25 171.7 1.5 91 28-123 161-265 (332)
29 smart00861 Transket_pyr Transk 99.8 1.1E-19 2.3E-24 147.8 8.1 77 131-208 47-137 (168)
30 PRK11892 pyruvate dehydrogenas 99.8 1.4E-19 3.1E-24 169.6 8.3 81 125-208 180-284 (464)
31 TIGR00759 aceE pyruvate dehydr 99.8 5.2E-19 1.1E-23 174.3 7.7 179 24-207 230-654 (885)
32 PRK05261 putative phosphoketol 99.7 1.1E-17 2.5E-22 164.2 9.5 168 32-208 185-551 (785)
33 COG3959 Transketolase, N-termi 99.7 1.9E-18 4E-23 147.6 2.7 76 23-103 152-243 (243)
34 cd02017 TPP_E1_EcPDC_like Thia 99.7 4.1E-18 8.8E-23 156.0 3.6 94 24-122 159-340 (386)
35 cd02012 TPP_TK Thiamine pyroph 99.5 3.4E-14 7.3E-19 123.3 4.4 94 24-122 139-248 (255)
36 cd02007 TPP_DXS Thiamine pyrop 99.0 1.1E-10 2.3E-15 98.1 1.5 72 28-106 115-195 (195)
37 cd06586 TPP_enzyme_PYR Pyrimid 98.8 7.2E-09 1.6E-13 81.7 6.7 76 130-207 32-122 (154)
38 COG2609 AceE Pyruvate dehydrog 98.8 5.1E-09 1.1E-13 101.6 5.0 74 133-206 562-656 (887)
39 COG0022 AcoB Pyruvate/2-oxoglu 98.6 2E-07 4.3E-12 83.5 8.5 78 127-208 42-144 (324)
40 cd02011 TPP_PK Thiamine pyroph 98.1 5.5E-06 1.2E-10 71.7 5.1 78 30-108 103-210 (227)
41 PF13292 DXP_synthase_N: 1-deo 97.6 6E-05 1.3E-09 66.6 3.9 41 54-100 229-270 (270)
42 KOG0524|consensus 97.4 8.4E-05 1.8E-09 66.1 2.4 77 128-208 76-177 (359)
43 PF09364 XFP_N: XFP N-terminal 96.0 0.021 4.6E-07 52.7 7.1 101 36-137 201-333 (379)
44 KOG0525|consensus 95.9 0.021 4.5E-07 50.6 6.2 79 126-208 79-183 (362)
45 PLN02374 pyruvate dehydrogenas 95.8 0.0063 1.4E-07 57.3 2.8 76 28-110 241-334 (433)
46 PLN02269 Pyruvate dehydrogenas 95.7 0.007 1.5E-07 55.7 2.4 81 24-110 172-268 (362)
47 CHL00149 odpA pyruvate dehydro 95.5 0.012 2.6E-07 53.7 3.2 77 30-109 177-267 (341)
48 cd02000 TPP_E1_PDC_ADC_BCADC T 95.1 0.073 1.6E-06 47.2 7.1 77 28-109 144-236 (293)
49 TIGR00239 2oxo_dh_E1 2-oxoglut 94.6 0.034 7.4E-07 56.9 4.0 79 127-208 640-744 (929)
50 KOG0523|consensus 94.3 0.082 1.8E-06 51.6 5.6 65 14-78 288-355 (632)
51 TIGR03181 PDH_E1_alph_x pyruva 93.9 0.065 1.4E-06 48.8 4.0 81 28-110 162-255 (341)
52 PRK09404 sucA 2-oxoglutarate d 93.8 0.071 1.5E-06 54.7 4.4 77 127-208 638-742 (924)
53 TIGR03182 PDH_E1_alph_y pyruva 93.8 0.063 1.4E-06 48.3 3.6 76 29-109 151-242 (315)
54 cd00568 TPP_enzymes Thiamine p 93.0 0.26 5.6E-06 39.0 5.6 41 52-100 128-168 (168)
55 PF02776 TPP_enzyme_N: Thiamin 92.9 0.31 6.7E-06 39.5 6.0 103 52-204 7-125 (172)
56 cd02008 TPP_IOR_alpha Thiamine 92.6 0.28 6.1E-06 40.1 5.5 45 51-101 132-177 (178)
57 cd03372 TPP_ComE Thiamine pyro 92.2 0.41 8.8E-06 39.4 5.9 45 52-105 115-159 (179)
58 cd07035 TPP_PYR_POX_like Pyrim 90.9 0.86 1.9E-05 35.9 6.4 64 139-203 40-118 (155)
59 cd02003 TPP_IolD Thiamine pyro 90.1 1.4 3E-05 36.9 7.2 46 52-105 143-188 (205)
60 PF00676 E1_dh: Dehydrogenase 87.7 1.5 3.2E-05 39.3 6.1 54 52-110 178-234 (300)
61 cd02002 TPP_BFDC Thiamine pyro 87.3 1.4 3.1E-05 35.4 5.4 41 52-100 138-178 (178)
62 cd02001 TPP_ComE_PpyrDC Thiami 87.2 1.7 3.6E-05 35.0 5.7 45 51-103 113-157 (157)
63 cd02016 TPP_E1_OGDC_like Thiam 85.0 2.5 5.4E-05 37.5 6.0 53 52-109 199-254 (265)
64 cd02004 TPP_BZL_OCoD_HPCL Thia 84.7 2.6 5.6E-05 34.0 5.6 41 52-100 131-171 (172)
65 cd03371 TPP_PpyrDC Thiamine py 84.5 2.7 5.9E-05 34.9 5.8 67 31-105 85-167 (188)
66 cd07037 TPP_PYR_MenD Pyrimidin 81.8 5.6 0.00012 32.4 6.5 62 140-202 42-118 (162)
67 cd07039 TPP_PYR_POX Pyrimidine 80.7 7.6 0.00017 31.4 6.9 65 138-203 43-122 (164)
68 PF02775 TPP_enzyme_C: Thiamin 80.2 3.1 6.6E-05 32.8 4.3 41 52-98 113-153 (153)
69 PRK07710 acetolactate synthase 79.0 6.1 0.00013 38.1 6.8 100 52-203 22-137 (571)
70 TIGR03297 Ppyr-DeCO2ase phosph 78.2 3.5 7.7E-05 38.0 4.7 51 139-190 32-100 (361)
71 cd02015 TPP_AHAS Thiamine pyro 77.6 6.3 0.00014 32.2 5.6 44 52-103 133-176 (186)
72 PF04273 DUF442: Putative phos 76.8 7.2 0.00016 29.9 5.3 46 52-101 49-96 (110)
73 PRK11269 glyoxylate carboligas 76.7 8.1 0.00018 37.4 6.9 100 52-202 10-126 (591)
74 COG1071 AcoA Pyruvate/2-oxoglu 75.9 7.9 0.00017 35.9 6.3 53 54-111 216-271 (358)
75 cd02014 TPP_POX Thiamine pyrop 74.6 9.2 0.0002 31.0 5.8 43 52-102 132-174 (178)
76 PRK06466 acetolactate synthase 74.4 7.3 0.00016 37.6 5.9 64 139-203 48-126 (574)
77 COG4032 Predicted thiamine-pyr 74.1 1.2 2.7E-05 36.4 0.4 46 141-187 50-109 (172)
78 PRK06965 acetolactate synthase 72.8 12 0.00026 36.3 7.0 100 52-202 27-142 (587)
79 PRK08199 thiamine pyrophosphat 71.8 14 0.0003 35.5 7.1 63 139-202 52-129 (557)
80 PRK08155 acetolactate synthase 71.1 11 0.00024 36.2 6.3 100 52-202 19-134 (564)
81 cd07034 TPP_PYR_PFOR_IOR-alpha 71.0 27 0.00059 27.4 7.6 65 133-200 42-122 (160)
82 TIGR02418 acolac_catab acetola 69.8 14 0.00031 35.1 6.7 63 140-203 43-120 (539)
83 cd02009 TPP_SHCHC_synthase Thi 69.1 10 0.00023 30.7 4.9 41 52-100 134-174 (175)
84 TIGR03297 Ppyr-DeCO2ase phosph 68.2 12 0.00027 34.4 5.7 47 52-106 294-341 (361)
85 cd02005 TPP_PDC_IPDC Thiamine 67.9 10 0.00023 31.0 4.7 44 52-102 128-175 (183)
86 TIGR02720 pyruv_oxi_spxB pyruv 67.8 17 0.00037 35.1 6.9 62 140-202 45-121 (575)
87 PLN02470 acetolactate synthase 67.0 14 0.0003 35.8 6.1 100 52-202 19-134 (585)
88 PRK07064 hypothetical protein; 66.9 17 0.00038 34.5 6.6 65 139-203 47-128 (544)
89 PRK08322 acetolactate synthase 66.7 19 0.00042 34.3 6.9 65 138-203 43-122 (547)
90 PRK07525 sulfoacetaldehyde ace 66.3 22 0.00048 34.4 7.3 63 139-202 49-126 (588)
91 PRK07449 2-succinyl-5-enolpyru 65.5 19 0.00041 34.5 6.6 63 140-203 54-131 (568)
92 PRK08611 pyruvate oxidase; Pro 65.4 23 0.0005 34.2 7.2 64 139-203 49-127 (576)
93 TIGR01504 glyox_carbo_lig glyo 64.7 22 0.00048 34.6 6.9 62 140-202 48-125 (588)
94 PRK09107 acetolactate synthase 64.4 19 0.00042 35.0 6.5 100 52-202 17-132 (595)
95 PRK08979 acetolactate synthase 64.2 21 0.00046 34.4 6.7 62 140-202 49-125 (572)
96 PRK07092 benzoylformate decarb 63.6 20 0.00044 34.1 6.4 101 52-204 18-134 (530)
97 PRK07282 acetolactate synthase 63.3 20 0.00044 34.5 6.4 100 52-202 16-131 (566)
98 PRK05858 hypothetical protein; 62.5 25 0.00053 33.7 6.8 64 139-203 48-126 (542)
99 PRK08617 acetolactate synthase 62.3 23 0.0005 33.9 6.6 100 52-203 11-126 (552)
100 PRK06163 hypothetical protein; 62.0 29 0.00063 29.2 6.4 51 52-110 131-182 (202)
101 PRK06882 acetolactate synthase 61.8 30 0.00064 33.3 7.2 62 140-202 49-125 (574)
102 TIGR00173 menD 2-succinyl-5-en 61.6 28 0.00061 32.3 6.8 63 139-202 44-121 (432)
103 PRK07979 acetolactate synthase 61.0 30 0.00066 33.3 7.1 62 140-202 49-125 (574)
104 PRK07418 acetolactate synthase 60.2 30 0.00066 33.7 7.1 103 52-202 25-143 (616)
105 PRK08266 hypothetical protein; 60.1 24 0.00051 33.7 6.2 103 52-203 10-130 (542)
106 TIGR03457 sulphoacet_xsc sulfo 60.0 30 0.00064 33.4 6.9 62 140-202 46-122 (579)
107 cd02013 TPP_Xsc_like Thiamine 59.4 30 0.00064 28.6 6.0 48 53-107 136-185 (196)
108 PRK06456 acetolactate synthase 59.4 28 0.0006 33.5 6.5 63 139-202 49-126 (572)
109 PRK09124 pyruvate dehydrogenas 59.3 26 0.00057 33.7 6.4 61 141-202 49-124 (574)
110 TIGR03846 sulfopy_beta sulfopy 58.9 29 0.00064 28.5 5.8 44 52-104 115-159 (181)
111 COG2873 MET17 O-acetylhomoseri 58.5 16 0.00035 34.4 4.5 56 40-106 102-161 (426)
112 PRK08273 thiamine pyrophosphat 58.3 33 0.00072 33.3 6.9 101 52-202 9-125 (597)
113 PRK07789 acetolactate synthase 58.3 29 0.00063 33.8 6.6 101 52-203 37-153 (612)
114 PRK06546 pyruvate dehydrogenas 58.3 31 0.00067 33.4 6.7 61 141-202 49-124 (578)
115 TIGR00118 acolac_lg acetolacta 57.9 34 0.00073 32.8 6.9 62 140-202 46-122 (558)
116 TIGR03845 sulfopyru_alph sulfo 57.7 42 0.00091 27.1 6.4 43 139-181 40-96 (157)
117 PRK08978 acetolactate synthase 55.9 29 0.00063 33.2 6.0 62 140-202 45-121 (548)
118 cd03376 TPP_PFOR_porB_like Thi 55.2 34 0.00074 29.4 5.8 46 52-103 156-202 (235)
119 PRK08527 acetolactate synthase 54.2 35 0.00075 32.8 6.3 63 139-202 47-124 (563)
120 PRK09404 sucA 2-oxoglutarate d 52.9 26 0.00055 36.5 5.3 53 52-109 401-456 (924)
121 PRK06457 pyruvate dehydrogenas 52.6 43 0.00093 32.1 6.6 65 138-203 44-123 (549)
122 PRK07586 hypothetical protein; 52.4 37 0.0008 32.1 6.1 62 140-202 46-122 (514)
123 cd07038 TPP_PYR_PDC_IPDC_like 51.8 73 0.0016 25.5 6.9 43 138-181 40-97 (162)
124 cd02006 TPP_Gcl Thiamine pyrop 51.2 58 0.0013 26.9 6.5 45 53-104 150-197 (202)
125 PRK08199 thiamine pyrophosphat 50.3 37 0.0008 32.6 5.8 44 52-103 497-540 (557)
126 PF01855 POR_N: Pyruvate flavo 49.7 13 0.00028 32.1 2.3 69 135-205 38-120 (230)
127 PRK07524 hypothetical protein; 49.5 52 0.0011 31.3 6.6 64 139-202 45-125 (535)
128 PRK08327 acetolactate synthase 48.1 83 0.0018 30.4 7.8 106 52-202 13-142 (569)
129 COG2121 Uncharacterized protei 47.6 36 0.00078 29.4 4.6 60 40-104 68-130 (214)
130 PRK06048 acetolactate synthase 46.8 60 0.0013 31.2 6.6 62 140-202 52-128 (561)
131 TIGR00239 2oxo_dh_E1 2-oxoglut 46.2 35 0.00077 35.5 5.1 53 53-110 403-458 (929)
132 KOG1182|consensus 45.9 11 0.00024 34.7 1.4 42 55-101 274-318 (432)
133 PRK06276 acetolactate synthase 45.9 60 0.0013 31.4 6.5 62 140-202 45-121 (586)
134 PLN02980 2-oxoglutarate decarb 44.3 69 0.0015 35.4 7.3 101 52-203 307-423 (1655)
135 PRK07064 hypothetical protein; 42.9 93 0.002 29.6 7.2 50 53-110 488-537 (544)
136 cd02018 TPP_PFOR Thiamine pyro 42.7 68 0.0015 27.5 5.7 46 52-102 158-204 (237)
137 PRK08659 2-oxoglutarate ferred 42.6 41 0.00089 31.1 4.6 67 130-200 46-127 (376)
138 cd03375 TPP_OGFOR Thiamine pyr 42.2 85 0.0018 25.9 6.1 47 52-104 140-187 (193)
139 TIGR03254 oxalate_oxc oxalyl-C 41.8 78 0.0017 30.3 6.6 64 139-202 46-125 (554)
140 PRK07092 benzoylformate decarb 41.1 61 0.0013 30.9 5.7 41 52-100 489-529 (530)
141 PRK08266 hypothetical protein; 41.0 72 0.0016 30.4 6.1 46 52-105 484-529 (542)
142 PRK06965 acetolactate synthase 40.9 54 0.0012 31.8 5.3 45 53-104 521-565 (587)
143 COG3962 Acetolactate synthase 40.3 60 0.0013 31.7 5.3 43 52-102 534-576 (617)
144 COG3957 Phosphoketolase [Carbo 39.0 57 0.0012 33.1 5.1 65 133-198 461-550 (793)
145 PF04028 DUF374: Domain of unk 38.9 1.3E+02 0.0027 21.5 5.7 59 40-103 10-71 (74)
146 PRK06725 acetolactate synthase 38.8 1.1E+02 0.0024 29.5 7.1 99 52-202 21-135 (570)
147 cd02010 TPP_ALS Thiamine pyrop 38.3 99 0.0022 25.0 5.8 42 53-102 130-171 (177)
148 PF00271 Helicase_C: Helicase 37.8 97 0.0021 20.8 4.9 50 54-109 1-50 (78)
149 cd08800 Death_UNC5A Death doma 35.8 39 0.00085 25.0 2.7 53 25-87 18-74 (84)
150 PRK06112 acetolactate synthase 35.3 86 0.0019 30.2 5.7 44 52-103 519-562 (578)
151 cd00758 MoCF_BD MoCF_BD: molyb 34.1 1.1E+02 0.0024 23.6 5.2 52 45-106 16-70 (133)
152 PRK06546 pyruvate dehydrogenas 33.8 1.2E+02 0.0027 29.3 6.6 44 52-103 489-532 (578)
153 TIGR03394 indol_phenyl_DC indo 33.5 1.5E+02 0.0033 28.4 7.1 100 52-202 6-127 (535)
154 CHL00099 ilvB acetohydroxyacid 32.6 1.7E+02 0.0036 28.4 7.2 62 139-201 57-133 (585)
155 PRK11864 2-ketoisovalerate fer 32.2 1.5E+02 0.0032 26.8 6.4 48 53-106 164-212 (300)
156 PRK07524 hypothetical protein; 32.0 99 0.0022 29.4 5.5 44 52-103 488-531 (535)
157 TIGR00177 molyb_syn molybdenum 31.7 1.1E+02 0.0024 23.9 4.9 39 45-88 24-65 (144)
158 PRK07789 acetolactate synthase 29.9 1.3E+02 0.0027 29.4 5.9 42 54-102 536-577 (612)
159 PRK06882 acetolactate synthase 29.9 1.2E+02 0.0027 29.1 5.8 45 53-104 505-549 (574)
160 PRK08322 acetolactate synthase 29.9 1.5E+02 0.0033 28.2 6.4 48 52-107 487-534 (547)
161 PRK06112 acetolactate synthase 29.6 45 0.00097 32.2 2.8 62 141-203 57-133 (578)
162 cd08798 Death_NFkB2_p100 Death 29.3 35 0.00077 24.8 1.5 53 20-87 10-66 (76)
163 cd02067 B12-binding B12 bindin 29.1 1.7E+02 0.0037 21.7 5.4 46 53-107 20-65 (119)
164 PRK11865 pyruvate ferredoxin o 28.9 1.9E+02 0.0041 26.1 6.4 48 53-106 168-216 (299)
165 PF00994 MoCF_biosynth: Probab 28.9 1E+02 0.0022 23.9 4.3 51 46-106 15-68 (144)
166 TIGR02720 pyruv_oxi_spxB pyruv 28.6 1.4E+02 0.0031 28.8 6.1 45 52-103 489-534 (575)
167 PRK08978 acetolactate synthase 28.4 1.4E+02 0.0031 28.4 6.0 43 53-103 485-527 (548)
168 PRK07525 sulfoacetaldehyde ace 28.4 1.3E+02 0.0029 29.1 5.8 51 53-110 519-571 (588)
169 TIGR01244 conserved hypothetic 27.8 1.6E+02 0.0034 22.9 5.2 64 35-102 24-97 (135)
170 PF08830 DUF1806: Protein of u 27.7 95 0.0021 24.3 3.7 24 77-103 6-29 (114)
171 cd08797 Death_NFkB1_p105 Death 27.6 42 0.00092 24.4 1.7 53 20-87 10-66 (76)
172 TIGR00118 acolac_lg acetolacta 27.2 1.5E+02 0.0032 28.4 5.8 43 53-103 496-538 (558)
173 PRK08611 pyruvate oxidase; Pro 27.1 1.5E+02 0.0032 28.7 5.9 44 53-104 490-533 (576)
174 PRK12474 hypothetical protein; 26.4 2.3E+02 0.0049 27.0 6.9 62 140-202 50-126 (518)
175 COG0028 IlvB Thiamine pyrophos 26.2 1.2E+02 0.0027 29.5 5.1 44 52-103 490-533 (550)
176 PRK08366 vorA 2-ketoisovalerat 26.2 69 0.0015 29.9 3.2 59 141-202 57-129 (390)
177 PLN02573 pyruvate decarboxylas 26.0 1.6E+02 0.0035 28.6 5.9 91 52-192 22-128 (578)
178 PRK09627 oorA 2-oxoglutarate-a 25.5 1E+02 0.0022 28.6 4.2 57 141-200 55-126 (375)
179 PF03162 Y_phosphatase2: Tyros 25.4 59 0.0013 26.5 2.4 67 33-99 27-99 (164)
180 PRK08527 acetolactate synthase 25.3 1.7E+02 0.0037 28.1 5.9 44 53-104 498-541 (563)
181 PRK11269 glyoxylate carboligas 25.2 1.7E+02 0.0038 28.3 6.0 43 54-103 513-558 (591)
182 CHL00099 ilvB acetohydroxyacid 24.9 1.7E+02 0.0037 28.4 5.8 42 53-102 515-556 (585)
183 PRK08327 acetolactate synthase 24.4 1.1E+02 0.0025 29.4 4.5 42 52-100 522-566 (569)
184 cd01125 repA Hexameric Replica 24.3 1.7E+02 0.0036 24.6 5.0 51 54-106 105-164 (239)
185 PLN00020 ribulose bisphosphate 24.0 96 0.0021 29.4 3.7 49 54-102 167-222 (413)
186 PRK09259 putative oxalyl-CoA d 24.0 60 0.0013 31.3 2.5 63 140-202 54-132 (569)
187 cd00886 MogA_MoaB MogA_MoaB fa 23.9 2.2E+02 0.0047 22.5 5.4 39 45-88 17-58 (152)
188 PRK07119 2-ketoisovalerate fer 23.8 83 0.0018 28.8 3.3 71 125-199 41-125 (352)
189 TIGR01769 GGGP geranylgeranylg 23.6 2.3E+02 0.005 24.1 5.7 44 52-97 16-59 (205)
190 TIGR03457 sulphoacet_xsc sulfo 23.2 2.4E+02 0.0052 27.2 6.5 46 53-105 514-561 (579)
191 PLN02470 acetolactate synthase 23.1 2E+02 0.0043 27.8 5.9 44 53-104 517-560 (585)
192 PRK09124 pyruvate dehydrogenas 22.7 2.1E+02 0.0046 27.5 6.0 45 52-104 489-533 (574)
193 PRK11869 2-oxoacid ferredoxin 22.7 2.2E+02 0.0048 25.4 5.7 48 51-104 148-196 (280)
194 smart00852 MoCF_biosynth Proba 22.6 2.6E+02 0.0056 21.3 5.5 39 45-88 15-56 (135)
195 cd00885 cinA Competence-damage 22.3 2.2E+02 0.0048 23.1 5.2 39 45-88 16-57 (170)
196 PRK06457 pyruvate dehydrogenas 22.2 2.1E+02 0.0046 27.4 5.8 42 53-102 479-520 (549)
197 PRK11866 2-oxoacid ferredoxin 22.2 2.3E+02 0.005 25.2 5.7 47 53-105 149-196 (279)
198 PRK07449 2-succinyl-5-enolpyru 21.4 1.3E+02 0.0027 28.9 4.1 42 53-102 509-550 (568)
199 PRK06276 acetolactate synthase 21.3 2.3E+02 0.0049 27.5 5.9 41 54-102 504-544 (586)
200 PRK06466 acetolactate synthase 21.1 2.5E+02 0.0055 27.0 6.2 44 54-104 508-551 (574)
201 PLN00205 ribisomal protein L13 21.0 86 0.0019 26.7 2.5 78 55-137 11-104 (191)
202 PRK05858 hypothetical protein; 21.0 3.1E+02 0.0068 26.2 6.7 43 53-103 490-532 (542)
203 PRK08273 thiamine pyrophosphat 20.8 2.4E+02 0.0051 27.4 5.9 43 53-103 506-548 (597)
204 TIGR01504 glyox_carbo_lig glyo 20.6 2.4E+02 0.0051 27.4 5.9 43 53-102 511-556 (588)
205 PRK07418 acetolactate synthase 20.5 2.4E+02 0.0051 27.6 5.9 44 53-104 519-562 (616)
206 PRK09259 putative oxalyl-CoA d 20.2 2.7E+02 0.0059 26.7 6.2 45 53-105 506-550 (569)
207 COG1058 CinA Predicted nucleot 20.0 1.9E+02 0.0042 25.6 4.6 45 46-98 19-66 (255)
No 1
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=2.3e-44 Score=348.16 Aligned_cols=177 Identities=30% Similarity=0.449 Sum_probs=155.8
Q ss_pred CccccCCCCCCCCCcchHHHHHhh-------------hHHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCC
Q psy10436 27 SNIKLSSPPSYKKGELVATRLAYG-------------IGLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGK 92 (208)
Q Consensus 27 ~~~~~~~A~~~kLdNLi~i~D~~G-------------~~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~k 92 (208)
.+|++++|++++|+||++++|.++ ++..+|++|||+++. |||||+ ++|.+|+++++..++|
T Consensus 163 ~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~~~~~~~r~~a~Gw~vi~vvDG~D~-----~ai~~A~~~a~~~~~~ 237 (663)
T PRK12754 163 SHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRGIDGHDA-----DSIKRAVEEARAVTDK 237 (663)
T ss_pred HHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhccCccHHHHHHhcCCeEEeeECCCCH-----HHHHHHHHHHHhcCCC
Confidence 345555999999999999998432 457899999999998 899998 9999999999877789
Q ss_pred CEEEEEEeecCCCCCccCCCccccCCcCCC--------------------------------------------------
Q psy10436 93 PTALIAKTFKGKDFPNIEDKEEWHGKPLGS-------------------------------------------------- 122 (208)
Q Consensus 93 P~vIi~~T~KG~G~~~~e~~~~~H~~~~~~-------------------------------------------------- 122 (208)
|++|+++|+||+|++++|++.+|||.+++.
T Consensus 238 Pt~I~~~T~~g~G~~~~e~~~~~Hg~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~ 317 (663)
T PRK12754 238 PSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKA 317 (663)
T ss_pred CEEEEEEeeeccCccccCCCccccCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875210
Q ss_pred ------------------------------------C--------------------------------------ccccc
Q psy10436 123 ------------------------------------S--------------------------------------SADVL 128 (208)
Q Consensus 123 ------------------------------------~--------------------------------------l~~f~ 128 (208)
. ..+|+
T Consensus 318 ~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~ 397 (663)
T PRK12754 318 YPQEAAEFTRRMKGEMPADFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAIN 397 (663)
T ss_pred CHHHHHHHHHHhcCCCchhHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCcccccccccc
Confidence 0 13466
Q ss_pred ccCCCcceeeccccccHHHHHHHHHhCCCcccE--------------EEeccccCCCcEEEEecCCccccCCCCCCCChh
Q psy10436 129 KAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALE 194 (208)
Q Consensus 129 ~~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ie 194 (208)
++||+|||++|||||+|+++|||||++|.++|| ||+.||+++||++|+||+|+++|+||+|||++|
T Consensus 398 ~~~p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~~tf~~F~~r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iE 477 (663)
T PRK12754 398 EDAAGNYIHYGVREFGMTAIANGIALHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVE 477 (663)
T ss_pred ccCCCCeEeeccchhhHHHHHhhHHhcCCCeEEEEeeHHHHHHHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHH
Confidence 789999999999999999999999995543565 888899999999999999999999999999999
Q ss_pred HHHHhccCCCceeC
Q psy10436 195 DIAMFRTIPACLVF 208 (208)
Q Consensus 195 Dia~~r~lPn~~V~ 208 (208)
||++||+||||+|+
T Consensus 478 dla~lR~iPn~~V~ 491 (663)
T PRK12754 478 QVASLRVTPNMSTW 491 (663)
T ss_pred HHHHHhcCCCcEEe
Confidence 99999999999986
No 2
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-44 Score=339.02 Aligned_cols=178 Identities=32% Similarity=0.486 Sum_probs=162.4
Q ss_pred cCccccCCCCCCCCCcchHHHHH-----hh--------hHHHHHHhcCCeEE-EEcCCCCCCchHHHHHHHHHHhhcCCC
Q psy10436 26 ISNIKLSSPPSYKKGELVATRLA-----YG--------IGLAKLAASNSRVI-ALDGDTKNSTFSDKLKKAFHEASQVKG 91 (208)
Q Consensus 26 ~~~~~~~~A~~~kLdNLi~i~D~-----~G--------~~~~k~~a~G~~vi-~VDGhd~~~~~~~~l~~Al~~ak~~~~ 91 (208)
+|+|++++|+++||+|||+++|. +| ++.+||+|+||+|+ .+||||+ ++|.+|+++||..++
T Consensus 164 vs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f~ed~~~RfeAyGW~vi~~~DG~D~-----e~I~~Ai~~Ak~~~d 238 (663)
T COG0021 164 VSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSFTEDVAKRFEAYGWNVIRVIDGHDL-----EAIDKAIEEAKASTD 238 (663)
T ss_pred cHHHHHHHHhhcCCCcEEEEEeCCCceeccCcccccchhHHHHHHhcCCeEEEecCCCCH-----HHHHHHHHHHHhcCC
Confidence 78999999999999999999983 33 46799999999999 5899998 999999999999999
Q ss_pred CCEEEEEEeecCCCCCccCCCccccCCcCCCC------------------------------------------------
Q psy10436 92 KPTALIAKTFKGKDFPNIEDKEEWHGKPLGSS------------------------------------------------ 123 (208)
Q Consensus 92 kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~------------------------------------------------ 123 (208)
|||+|+|+|++|+|.|..|++.++||.|++.+
T Consensus 239 kPtlI~~kTiIG~Gsp~kegt~~~HGapLg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~ 318 (663)
T COG0021 239 KPTLIIVKTIIGKGSPNKEGTHKVHGAPLGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYK 318 (663)
T ss_pred CCeEEEEEeeeecCCCCcCCCccccCCCCCHHHHHHHHHHhCCCCCceecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999985310
Q ss_pred -------------------------------------------------------------------------ccccc-c
Q psy10436 124 -------------------------------------------------------------------------SADVL-K 129 (208)
Q Consensus 124 -------------------------------------------------------------------------l~~f~-~ 129 (208)
..+|. .
T Consensus 319 ~~~Pe~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~ 398 (663)
T COG0021 319 KKYPELAAEFERRLNGELPANWAAFLPKFEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPE 398 (663)
T ss_pred hhChHHHHHHHHHhcccCchhHHHhhhhhcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCC
Confidence 12233 5
Q ss_pred cCCCcceeeccccccHHHHHHHHHhCCCcccE--------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 130 AYPDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 130 ~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
.|++|||.+||+|++|.++++|||++|..+|| +|++|+|++|+++|.||+|+.+|+||||||++|+
T Consensus 399 ~~~gr~i~~GVREf~M~AimNGialhGg~~pyggTFlvFsdY~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEq 478 (663)
T COG0021 399 NYAGRYIHFGVREFAMAAIMNGIALHGGFIPYGGTFLVFSDYARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQ 478 (663)
T ss_pred CCCCCeeEEeeHHHHHHHHHHhHHHhcCceeecceehhhHhhhhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHH
Confidence 67799999999999999999999999987786 8999999999999999999999999999999999
Q ss_pred HHHhccCCCceeC
Q psy10436 196 IAMFRTIPACLVF 208 (208)
Q Consensus 196 ia~~r~lPn~~V~ 208 (208)
++.||+|||+.|+
T Consensus 479 La~LRaiPN~~V~ 491 (663)
T COG0021 479 LASLRAIPNLSVI 491 (663)
T ss_pred HHHhhccCCceeE
Confidence 9999999999986
No 3
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=4.7e-44 Score=346.34 Aligned_cols=179 Identities=30% Similarity=0.412 Sum_probs=155.1
Q ss_pred cCcCc--cccCCCCCCCCCcchHHHHHhh-------------hHHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhh
Q psy10436 24 VDISN--IKLSSPPSYKKGELVATRLAYG-------------IGLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEAS 87 (208)
Q Consensus 24 ~d~~~--~~~~~A~~~kLdNLi~i~D~~G-------------~~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak 87 (208)
.+++. |++++|++++|+||++++|.++ +..++|++|||+|+. |||||+ ++|.+||++++
T Consensus 158 l~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~~~~~~~~f~a~Gw~~~~~vDGhD~-----~~i~~a~~~a~ 232 (663)
T PRK12753 158 LMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGHDP-----QAIKEAILEAQ 232 (663)
T ss_pred cccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhcChhHHHHHHHcCCeEEceeCCCCH-----HHHHHHHHHHH
Confidence 34444 4455999999999999998332 356899999999995 999998 99999999998
Q ss_pred cCCCCCEEEEEEeecCCCCCccCCCccccCCcCC----------------------------------------------
Q psy10436 88 QVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLG---------------------------------------------- 121 (208)
Q Consensus 88 ~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~---------------------------------------------- 121 (208)
..++||++|+++|+||+|++++|++.+|||.+++
T Consensus 233 ~~~~~P~~I~~~T~kG~G~~~~e~~~~~H~~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~ 312 (663)
T PRK12753 233 SVKDKPSLIICRTIIGFGSPNKAGKEESHGAPLGEEEVALTRQKLGWHHPPFEIPKEIYAAWDAREKGEKAEQAWNEKFA 312 (663)
T ss_pred HCCCCeEEEEEEEeecCCCCcccCCCCccCCCCCHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 8778999999999999999999999999983210
Q ss_pred --------------------------------------C----------------------------------------C
Q psy10436 122 --------------------------------------S----------------------------------------S 123 (208)
Q Consensus 122 --------------------------------------~----------------------------------------~ 123 (208)
. +
T Consensus 313 ~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~ 392 (663)
T PRK12753 313 AYKKAYPELAAEFTRRMSGGLPKDWEKKTQKYINELQANPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSG 392 (663)
T ss_pred HHHHHCHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCccccc
Confidence 0 0
Q ss_pred cccccccCCCcceeeccccccHHHHHHHHHh-CCCcccE--------------EEeccccCCCcEEEEecCCccccCCCC
Q psy10436 124 SADVLKAYPDRYIECFIAEQNLVGVAIGAAC-RNRTVPF--------------IRMGAISQTNVNFVGSHCGVSIGEDGP 188 (208)
Q Consensus 124 l~~f~~~~P~r~~~~GIaE~~mv~~AaGlA~-~G~~~~~--------------ir~~a~~~~~v~~v~~~~G~~~g~dG~ 188 (208)
..+|+++||+||||+|||||+|+++|||||+ .|+ +|| ||+.||+++||++|++|+|+++|+||+
T Consensus 393 ~~~f~~~~p~r~i~~GIaEq~mv~~aaGlA~~~G~-~P~~~tf~~F~~r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~ 471 (663)
T PRK12753 393 SKSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGF-VPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGP 471 (663)
T ss_pred ccchhhcCCCCEEEeeecHHHHHHHHHHHHHhCCC-eEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcccCCCCc
Confidence 0346678899999999999999999999999 566 455 888899999999999999999999999
Q ss_pred CCCChhHHHHhccCCCceeC
Q psy10436 189 SQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 189 TH~~ieDia~~r~lPn~~V~ 208 (208)
|||++|||++||+||||+|+
T Consensus 472 THq~iedla~lR~iPn~~v~ 491 (663)
T PRK12753 472 THQPVEQLASLRLTPNFSTW 491 (663)
T ss_pred ccccHHHHHHHhcCCCCEEE
Confidence 99999999999999999986
No 4
>PLN02790 transketolase
Probab=100.00 E-value=3.9e-43 Score=339.56 Aligned_cols=176 Identities=26% Similarity=0.374 Sum_probs=153.5
Q ss_pred CccccCCCCCCCCCcchHHHHHhh-------------hHHHHHHhcCCeEEEEcC--CCCCCchHHHHHHHHHHhhcCCC
Q psy10436 27 SNIKLSSPPSYKKGELVATRLAYG-------------IGLAKLAASNSRVIALDG--DTKNSTFSDKLKKAFHEASQVKG 91 (208)
Q Consensus 27 ~~~~~~~A~~~kLdNLi~i~D~~G-------------~~~~k~~a~G~~vi~VDG--hd~~~~~~~~l~~Al~~ak~~~~ 91 (208)
.+|++++|++++|+||++++|.++ ++.++|++|||+++.||| ||+ ++|.+||+++++..+
T Consensus 154 ~~EAl~~A~~~~L~nli~i~d~N~~~i~~~~~~~~~~~~~~~f~a~G~~~~~vdgg~hd~-----~~l~~a~~~a~~~~~ 228 (654)
T PLN02790 154 SNEAASLAGHWGLGKLIVLYDDNHISIDGDTEIAFTEDVDKRYEALGWHTIWVKNGNTDY-----DEIRAAIKEAKAVTD 228 (654)
T ss_pred HHHHHHHHHHhCCCCEEEEEecCCccccCCcccccchhHHHHHHHcCCeEEEECCCCCCH-----HHHHHHHHHHHhcCC
Confidence 345556999999999999998433 346899999999999977 898 999999999987667
Q ss_pred CCEEEEEEeecCCCCCccCCCccccCCcCCC-------------------------------------------------
Q psy10436 92 KPTALIAKTFKGKDFPNIEDKEEWHGKPLGS------------------------------------------------- 122 (208)
Q Consensus 92 kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~------------------------------------------------- 122 (208)
||++|+++|+||+|++++|++.+||+.+++.
T Consensus 229 ~P~lI~~~T~kG~G~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 308 (654)
T PLN02790 229 KPTLIKVTTTIGYGSPNKANSYSVHGAALGEKEVDATRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEWNAKFAEYK 308 (654)
T ss_pred CeEEEEEEEeecCCCccccCCCCcCCCCCCHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999865100
Q ss_pred ------------------------------------------------------------------------Cccccccc
Q psy10436 123 ------------------------------------------------------------------------SSADVLKA 130 (208)
Q Consensus 123 ------------------------------------------------------------------------~l~~f~~~ 130 (208)
++.+|+++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~ 388 (654)
T PLN02790 309 KKYPEEAAELKSLISGELPSGWEKALPTFTPEDPADATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKD 388 (654)
T ss_pred hhCHHHHHHHHHHhccCCchhhhhhhhhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhc
Confidence 02356666
Q ss_pred -CCCcceeeccccccHHHHHHHHHhCC--CcccE--------------EEeccccCCCcEEEEecCCccccCCCCCCCCh
Q psy10436 131 -YPDRYIECFIAEQNLVGVAIGAACRN--RTVPF--------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMAL 193 (208)
Q Consensus 131 -~P~r~~~~GIaE~~mv~~AaGlA~~G--~~~~~--------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~i 193 (208)
||+||||+|||||+|+++|||||++| ++ || +|+.|||++||+|+++|+|+++|+||+|||++
T Consensus 389 ~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~-P~~~tf~~F~~~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq~i 467 (654)
T PLN02790 389 TPEERNVRFGVREHGMGAICNGIALHSSGLI-PYCATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQPI 467 (654)
T ss_pred CCCCCeEEeeechHHHHHHHHHHHhcCCCcE-EEEEecHHHHHHHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcccH
Confidence 59999999999999999999999975 74 54 78889999999999999999999999999999
Q ss_pred hHHHHhccCCCceeC
Q psy10436 194 EDIAMFRTIPACLVF 208 (208)
Q Consensus 194 eDia~~r~lPn~~V~ 208 (208)
|||++||+||||+|+
T Consensus 468 edla~lR~iPnl~V~ 482 (654)
T PLN02790 468 EHLASLRAMPNILML 482 (654)
T ss_pred HHHHHhcCCCCcEEE
Confidence 999999999999985
No 5
>KOG0523|consensus
Probab=100.00 E-value=1.1e-42 Score=326.73 Aligned_cols=177 Identities=46% Similarity=0.715 Sum_probs=160.7
Q ss_pred cCccccCCCCCCCCCcchHHHHHh-----h--------hHH-HHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCC
Q psy10436 26 ISNIKLSSPPSYKKGELVATRLAY-----G--------IGL-AKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKG 91 (208)
Q Consensus 26 ~~~~~~~~A~~~kLdNLi~i~D~~-----G--------~~~-~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~ 91 (208)
++||++++|++++||||+++.|.+ | ++. .+|++|||++..|||||. ++|.+||.+++..++
T Consensus 157 ~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ea~g~~~~~V~~~d~-----d~i~ka~~~a~~~k~ 231 (632)
T KOG0523|consen 157 SVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRFEAFGWNVIIVDGGDV-----DEIRKAIGKAKSVKG 231 (632)
T ss_pred hHHHHHhhhhhcccCCEEEEEccccccCCCCCcccccccHHHHHHHHhCceEEEEcCcCH-----HHHHHHHhhhhhccC
Confidence 467888899999999999999932 2 234 499999999999999997 999999999999999
Q ss_pred CCEEEEEEeecCCCCCccCCCccccCCcCCC-------------------------------------------------
Q psy10436 92 KPTALIAKTFKGKDFPNIEDKEEWHGKPLGS------------------------------------------------- 122 (208)
Q Consensus 92 kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~------------------------------------------------- 122 (208)
||++|.++|+||+|++..+ ..+|||.+++.
T Consensus 232 kpt~i~~~t~~g~G~~~ig-~~~~Hg~pl~~~~~~~~k~~~~~P~~~~~v~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~ 310 (632)
T KOG0523|consen 232 KPTAIKATTFIGRGSPYIG-SESVHGAPLGEDDVERVKSIKGLPVLIFVVPEKVKLYPEKPVEDARAISVRIPKIWEKSL 310 (632)
T ss_pred CceeeeeeeeeecCccccc-cccccCCcchhhHHHHHHhhcCCcceeEEeccccccCCCcccccccccccCcCccccccC
Confidence 9999999999999999999 99999987410
Q ss_pred -----------------------------------------CcccccccCCCcceeeccccccHHHHHHHHHhCCCcccE
Q psy10436 123 -----------------------------------------SSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF 161 (208)
Q Consensus 123 -----------------------------------------~l~~f~~~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~ 161 (208)
-++.|+++||+|||+||||||||+++|+|+|.+|+.+||
T Consensus 311 p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~td~~~~~~p~R~i~~giaEq~mv~ia~G~a~~g~~~Pf 390 (632)
T KOG0523|consen 311 PTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLTDFFPKRFPERFIECGIAEQNMVGIANGIACRGRTIPF 390 (632)
T ss_pred CccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchhhhccccCccceEEEeeehhhhHHhhhchhcCCCccch
Confidence 024456789999999999999999999999999997787
Q ss_pred --------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 162 --------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 162 --------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
+|+.++.+.||+++++|+|++.|+||||||++||+|+||+||||+||
T Consensus 391 ~~tf~~F~trA~dqvr~~a~s~~~v~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~ 451 (632)
T KOG0523|consen 391 CGTFAAFFTRAFDQVRMGALSQANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVF 451 (632)
T ss_pred hHHHHHHHHHhhhheeehhhccCCcEEEEEeccccccCCCcccccHHHHHHHHhCCCceEE
Confidence 99999999999999999999999999999999999999999999986
No 6
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=5.9e-43 Score=338.63 Aligned_cols=176 Identities=32% Similarity=0.429 Sum_probs=152.7
Q ss_pred CccccCCCCCCCCCcchHHHHHhh-------------hHHHHHHhcCCeEEEE-cCC-CCCCchHHHHHHHHHHhhcCCC
Q psy10436 27 SNIKLSSPPSYKKGELVATRLAYG-------------IGLAKLAASNSRVIAL-DGD-TKNSTFSDKLKKAFHEASQVKG 91 (208)
Q Consensus 27 ~~~~~~~A~~~kLdNLi~i~D~~G-------------~~~~k~~a~G~~vi~V-DGh-d~~~~~~~~l~~Al~~ak~~~~ 91 (208)
.+|++++|++++|+||++++|.++ +..++|++|||+|+.| ||| |+ ++|.+||+++++..+
T Consensus 165 ~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~~~~~~~~f~a~G~~~i~v~dG~~D~-----~~l~~a~~~a~~~~~ 239 (661)
T PTZ00089 165 SQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSFTEDVEKKYEAYGWHVIEVDNGNTDF-----DGLRKAIEEAKKSKG 239 (661)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCcccccCcccccCccHHHHHHhcCCcEEEeCCCCCCH-----HHHHHHHHHHHhcCC
Confidence 345555899999999999988432 3468999999999998 999 98 999999999998768
Q ss_pred CCEEEEEEeecCCCCCccCCCccccCCcCCC-------------------------------------------------
Q psy10436 92 KPTALIAKTFKGKDFPNIEDKEEWHGKPLGS------------------------------------------------- 122 (208)
Q Consensus 92 kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~------------------------------------------------- 122 (208)
||++|+++|+||+| +++|++.+|||.+++.
T Consensus 240 ~P~~I~~~T~kG~G-~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 318 (661)
T PTZ00089 240 KPKLIIVKTTIGYG-SSKAGTEKVHGAPLGDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQHVEKKKENYEAWKKRFAKY 318 (661)
T ss_pred CcEEEEEEeeecCC-CCcCCCCCccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999999 6888999999864200
Q ss_pred -------------------------------------------------------------C------c------ccccc
Q psy10436 123 -------------------------------------------------------------S------S------ADVLK 129 (208)
Q Consensus 123 -------------------------------------------------------------~------l------~~f~~ 129 (208)
+ + .+|++
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~ 398 (661)
T PTZ00089 319 TAAFPKEAQAIERRFKGELPPGWEKKLPKYTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTK 398 (661)
T ss_pred HHHCHHHHHHHHHHhccCCchhhhhhhhhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccc
Confidence 0 1 24667
Q ss_pred cCC-CcceeeccccccHHHHHHHHHh-CCCcccE-------------EEeccccCCCcEEEEecCCccccCCCCCCCChh
Q psy10436 130 AYP-DRYIECFIAEQNLVGVAIGAAC-RNRTVPF-------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALE 194 (208)
Q Consensus 130 ~~P-~r~~~~GIaE~~mv~~AaGlA~-~G~~~~~-------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ie 194 (208)
+|| +||||+|||||||+++|+|||+ .|++|++ ||+.|||++||+|+++|+|+++|+||+|||++|
T Consensus 399 ~~P~~rfi~~GIaEq~mv~~AaGlA~~~G~~P~~~tf~~Fl~Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~ie 478 (661)
T PTZ00089 399 ASPEGRYIRFGVREHAMCAIMNGIAAHGGFIPFGATFLNFYGYALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVE 478 (661)
T ss_pred cCCCCCeeeeeecHHHHHHHHHHHHHcCCCeEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHH
Confidence 799 8999999999999999999999 6664332 888999999999999999999999999999999
Q ss_pred HHHHhccCCCceeC
Q psy10436 195 DIAMFRTIPACLVF 208 (208)
Q Consensus 195 Dia~~r~lPn~~V~ 208 (208)
||++||+||||+|+
T Consensus 479 dia~lR~iPn~~V~ 492 (661)
T PTZ00089 479 TLALLRATPNLLVI 492 (661)
T ss_pred HHHHHhcCCCcEEE
Confidence 99999999999986
No 7
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.6e-42 Score=333.56 Aligned_cols=177 Identities=20% Similarity=0.299 Sum_probs=151.6
Q ss_pred CcCccccC--CCCCCCCCcchHHHHHhhh-----------------------------------HHHHHHhcCCeEE-EE
Q psy10436 25 DISNIKLS--SPPSYKKGELVATRLAYGI-----------------------------------GLAKLAASNSRVI-AL 66 (208)
Q Consensus 25 d~~~~~~~--~A~~~kLdNLi~i~D~~G~-----------------------------------~~~k~~a~G~~vi-~V 66 (208)
++++.|++ .|++++ +||++++|-++. ..++|++|||+|+ .|
T Consensus 212 ~eG~~wEAl~~a~~~~-~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~v 290 (641)
T PLN02234 212 TAGQAYEAMNNAGYLH-SNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPV 290 (641)
T ss_pred hhHHHHHHHHHHhhhC-CCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeE
Confidence 45555555 778444 999998873321 2479999999999 79
Q ss_pred cCCCCCCchHHHHHHHHHHhhcCC-CCCEEEEEEeecCCCCCccCC-CccccCCcC------------------------
Q psy10436 67 DGDTKNSTFSDKLKKAFHEASQVK-GKPTALIAKTFKGKDFPNIED-KEEWHGKPL------------------------ 120 (208)
Q Consensus 67 DGhd~~~~~~~~l~~Al~~ak~~~-~kP~vIi~~T~KG~G~~~~e~-~~~~H~~~~------------------------ 120 (208)
||||+ ++|.++|+++|..+ +||++||++|+||||++++|+ ..+||+..+
T Consensus 291 DGHd~-----~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv~~~E~~~~~~H~~~~~~~~~g~~~~~~~~~~sy~~af~~ 365 (641)
T PLN02234 291 DGHNI-----DDLVSILETLKSTKTIGPVLIHVVTEKGRGYPYAERADDKYHGVLKFDPETGKQFKNISKTQSYTSCFVE 365 (641)
T ss_pred CCCCH-----HHHHHHHHHHHhcCCCCCEEEEEEEecCCCcchhhcCCcccCCCCCCCccccccccCCCCCCCHHHHHHH
Confidence 99999 99999999998765 699999999999999999997 679997542
Q ss_pred ---------------------CCCcccccccCCCcceeeccccccHHHHHHHHHhCCCcccE-------------EE-ec
Q psy10436 121 ---------------------GSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF-------------IR-MG 165 (208)
Q Consensus 121 ---------------------~~~l~~f~~~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~-------------ir-~~ 165 (208)
+.++..|+++||+||||+|||||+||++|+|||++|++|++ || ++
T Consensus 366 aL~e~a~~D~~Iv~l~adm~ggt~~~~f~~~fPdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~fs~Fl~RA~DQI~~dv 445 (641)
T PLN02234 366 ALIAEAEADKDIVAIHAAMGGGTMLNLFESRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIYSSFMQRAYDQVVHDV 445 (641)
T ss_pred HHHHHHHHCcCEEEEECCCCCCcchHHHHHHccccccCCCcCHHHHHHHHHHHHHCCCeEEEEehHHHHHHHHHHHHHHH
Confidence 12357789999999999999999999999999999996543 44 56
Q ss_pred cccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 166 AISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 166 a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
|++++||+++++++|+ +|+||+|||++||+++||+||||+|+
T Consensus 446 a~~~lpV~~v~~~aG~-~g~dG~TH~~~~Dia~lr~iPnl~V~ 487 (641)
T PLN02234 446 DLQKLPVRFAIDRAGL-MGADGPTHCGAFDVTFMACLPNMIVM 487 (641)
T ss_pred hhcCCCEEEEEeCCcc-CCCCCccccccHHHHHHhcCCCCEEE
Confidence 9999999999999999 69999999999999999999999985
No 8
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=5.4e-42 Score=331.56 Aligned_cols=180 Identities=26% Similarity=0.344 Sum_probs=155.6
Q ss_pred cCcCc--cccCCCCCCCCCcchHHHHHhh-------------hHHHHHHhcCCeEEEE-cCCCCCCchHHHHHHHHHHhh
Q psy10436 24 VDISN--IKLSSPPSYKKGELVATRLAYG-------------IGLAKLAASNSRVIAL-DGDTKNSTFSDKLKKAFHEAS 87 (208)
Q Consensus 24 ~d~~~--~~~~~A~~~kLdNLi~i~D~~G-------------~~~~k~~a~G~~vi~V-DGhd~~~~~~~~l~~Al~~ak 87 (208)
.+++. |++++|++++|+||++++|.++ +..++|++|||+|+.| ||||+ +++.+|+++++
T Consensus 154 l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~~~~~~~~~~a~Gw~~~~v~DG~D~-----~ai~~A~~~a~ 228 (653)
T TIGR00232 154 LQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSFTEDVAKRFEAYGWEVLEVEDGHDL-----AAIDAAIEEAK 228 (653)
T ss_pred ccccHHHHHHHHHHHhCCCcEEEEEeCCCeeeccccccccCccHHHHHHhcCCcEEEeCCCCCH-----HHHHHHHHHHH
Confidence 34544 4555999999999999998433 3568999999999999 99998 99999999998
Q ss_pred cCCCCCEEEEEEeecCCCCCccCCCccccCCcCCC---------------------------------------------
Q psy10436 88 QVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGS--------------------------------------------- 122 (208)
Q Consensus 88 ~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~--------------------------------------------- 122 (208)
..++||++|+++|+||+|++++|++..|||.+++.
T Consensus 229 ~~~~~P~~I~~~T~~g~G~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~w~~~ 308 (653)
T TIGR00232 229 ASKDKPTLIEVTTTIGFGSPNKAGTHGVHGAPLGDEDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGAKAEQEWNEL 308 (653)
T ss_pred hCCCCCEEEEEEeeecccCcccCCCCcccCCCCCHHHHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 87779999999999999999999999999874210
Q ss_pred ------------------------------------C------------------------------------ccc----
Q psy10436 123 ------------------------------------S------------------------------------SAD---- 126 (208)
Q Consensus 123 ------------------------------------~------------------------------------l~~---- 126 (208)
. +..
T Consensus 309 ~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~ 388 (653)
T TIGR00232 309 FAAYKKKYPELAAEFTRRLSGELPADWDKKLPEFKAKLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSG 388 (653)
T ss_pred HHHHHHHCHHHHHHHHHHHhccCchhhhhhhhhhhccCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCccccccc
Confidence 0 011
Q ss_pred -ccccCCCcceeeccccccHHHHHHHHHhCCCcccE--------------EEeccccCCCcEEEEecCCccccCCCCCCC
Q psy10436 127 -VLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQM 191 (208)
Q Consensus 127 -f~~~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~ 191 (208)
|+++||+||||+|||||+|+++|+|||++|.++|| ||+.||+++||++++||+|+++|+||+|||
T Consensus 389 ~f~~~~p~rfi~~GIaEq~mv~~AaGlA~~gG~~p~~~tf~~F~~r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq 468 (653)
T TIGR00232 389 DLHENPLGNYIHYGVREFAMGAIMNGIALHGGFKPYGGTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQ 468 (653)
T ss_pred chhhcCCCCeEeecccHHHHHHHHHHHHHcCCCeEEEEEhHHHHHHHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccC
Confidence 66789999999999999999999999995433565 788899999999999999999999999999
Q ss_pred ChhHHHHhccCCCceeC
Q psy10436 192 ALEDIAMFRTIPACLVF 208 (208)
Q Consensus 192 ~ieDia~~r~lPn~~V~ 208 (208)
++|||++||+||||+|+
T Consensus 469 ~iedia~lr~iPn~~v~ 485 (653)
T TIGR00232 469 PIEQLASLRAIPNLSVW 485 (653)
T ss_pred CHHHHHHHhcCCCCEEE
Confidence 99999999999999985
No 9
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.7e-41 Score=327.54 Aligned_cols=149 Identities=23% Similarity=0.350 Sum_probs=134.3
Q ss_pred HHHHhcCCeEE-EEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCC-CccccCCcC-----------
Q psy10436 54 AKLAASNSRVI-ALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIED-KEEWHGKPL----------- 120 (208)
Q Consensus 54 ~k~~a~G~~vi-~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~-~~~~H~~~~----------- 120 (208)
++|++|||+|+ .|||||+ ++|.+||+++|+..+||++||++|+||||++++|+ ...|||.++
T Consensus 240 ~~f~a~G~~~~~~vdGhd~-----~~l~~al~~ak~~~~~P~~I~~~T~kGkG~~~~e~~~~~~Hg~~~f~~~~~~~~~~ 314 (641)
T PRK12571 240 TLFEELGFTYVGPIDGHDM-----EALLSVLRAARARADGPVLVHVVTEKGRGYAPAEADEDKYHAVGKFDVVTGLQKKS 314 (641)
T ss_pred hHHHHcCCEEECccCCCCH-----HHHHHHHHHHHhCCCCCEEEEEEecCccCcchhhcCCCcccCCCCcCCCCCcccCC
Confidence 79999999999 5999998 99999999999866899999999999999999996 579998542
Q ss_pred ----------------------------------CCCcccccccCCCcceeeccccccHHHHHHHHHhCCCcccE-----
Q psy10436 121 ----------------------------------GSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF----- 161 (208)
Q Consensus 121 ----------------------------------~~~l~~f~~~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~----- 161 (208)
+.++..|+++||+||||+|||||+|+++|+|||+.|++|++
T Consensus 315 ~~~~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~~~~~f~~~~p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~~f~~ 394 (641)
T PRK12571 315 APSAPSYTSVFGEELTKEAAEDSDIVAITAAMPLGTGLDKLQKRFPNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAVYST 394 (641)
T ss_pred CccchhHHHHHHHHHHHHHhhCCCEEEEeCCccCCCChHHHHHhCCCcccccCccHHHHHHHHHHHHHCCCEEEEEehHH
Confidence 12357788999999999999999999999999999996543
Q ss_pred --------EE-eccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 162 --------IR-MGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 162 --------ir-~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
|| ++|++++||+++++++|+ .|+||+|||++||+++||+||||+|+
T Consensus 395 Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~-~g~dG~THq~~~dia~lr~iPnl~V~ 449 (641)
T PRK12571 395 FLQRGYDQLLHDVALQNLPVRFVLDRAGL-VGADGATHAGAFDLAFLTNLPNMTVM 449 (641)
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEECCCc-CCCCCccccccHHHHHHhcCCCCEEE
Confidence 65 479999999999999999 59999999999999999999999985
No 10
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=5.5e-41 Score=324.86 Aligned_cols=148 Identities=25% Similarity=0.413 Sum_probs=132.4
Q ss_pred HHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCC-CCCEEEEEEeecCCCCCccCC-CccccCCcC-----------
Q psy10436 55 KLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVK-GKPTALIAKTFKGKDFPNIED-KEEWHGKPL----------- 120 (208)
Q Consensus 55 k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~-~kP~vIi~~T~KG~G~~~~e~-~~~~H~~~~----------- 120 (208)
.|++|||+|+. |||||+ ++|.++|+.+|+.+ ++|++||++|+||||++++|+ ...|||..+
T Consensus 277 ~fe~~G~~y~g~iDGHd~-----~~L~~al~~~k~~~~~~P~vihv~T~KGkG~~~ae~~~~~~H~~~~f~~~~g~~~~~ 351 (677)
T PLN02582 277 LFEELGLYYIGPVDGHNI-----DDLVTILREVKSTKTTGPVLIHVVTEKGRGYPYAERAADKYHGVVKFDPATGKQFKV 351 (677)
T ss_pred hHHHcCCeEEeeeCCCCH-----HHHHHHHHHHHhcCCCCCEEEEEEecCCCCCChhhcChhhcCCCCCCCcccCCccCC
Confidence 49999999985 999999 99999999999874 799999999999999999995 458997432
Q ss_pred ----------------------------------CCCcccccccCCCcceeeccccccHHHHHHHHHhCCCcccE-----
Q psy10436 121 ----------------------------------GSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF----- 161 (208)
Q Consensus 121 ----------------------------------~~~l~~f~~~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~----- 161 (208)
+.++..|+++||+||||+|||||+||++|+|||+.|++|++
T Consensus 352 ~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl~~f~~~fP~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~fs~ 431 (677)
T PLN02582 352 KAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFARRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSS 431 (677)
T ss_pred CCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCCCccchHHHHHHcCccccccCcCHHHHHHHHHHHHHCCCeEEEEecHH
Confidence 12357789999999999999999999999999999996543
Q ss_pred --------E-EeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 162 --------I-RMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 162 --------i-r~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
| +++|++++||+++++|+|+ +|+||+|||++||+++||+||||+|+
T Consensus 432 Fl~RA~DQI~~dval~~lpVv~v~~~aG~-vg~dG~TH~~~~Dia~lr~iPnl~V~ 486 (677)
T PLN02582 432 FLQRGYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGAFDVTYMACLPNMVVM 486 (677)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEECCCc-ccCCCCcccccHHHHHHhcCCCCEEE
Confidence 3 4679999999999999999 78999999999999999999999985
No 11
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=2.9e-40 Score=311.66 Aligned_cols=147 Identities=30% Similarity=0.471 Sum_probs=137.1
Q ss_pred HHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccC-CCccccCCcC------------
Q psy10436 55 KLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIE-DKEEWHGKPL------------ 120 (208)
Q Consensus 55 k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e-~~~~~H~~~~------------ 120 (208)
.|+++|++|+. +||||+ ++|..+|+.+|+.+ +|++||+.|.||||++++| ++.+||+..+
T Consensus 238 lFeelGf~YiGPiDGHni-----~~Li~~Lk~~kd~~-gPvllHv~T~KGKGY~pAE~d~~~~H~v~~f~~~~tg~~~~~ 311 (627)
T COG1154 238 LFEELGFNYIGPIDGHNL-----EELIPTLKNAKDLK-GPVLLHVVTKKGKGYKPAEEDPIKYHGVGPFDPIETGQSKKS 311 (627)
T ss_pred hHHHhCCeeECCcCCCCH-----HHHHHHHHHHhcCC-CCEEEEEEecCCCCCChhhcChhhccCCCCCCccccCccCCC
Confidence 79999999998 899999 99999999999965 6999999999999999988 7789999642
Q ss_pred ----------------------------------CCCcccccccCCCcceeeccccccHHHHHHHHHhCCCcccE-----
Q psy10436 121 ----------------------------------GSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF----- 161 (208)
Q Consensus 121 ----------------------------------~~~l~~f~~~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~----- 161 (208)
++||.+|+++||+||||+|||||++|++|||||++|++|++
T Consensus 312 ~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~~~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaIYST 391 (627)
T COG1154 312 KPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFSKKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAIYST 391 (627)
T ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHHHhCchhheehhhhHHHHHHHHHHHHhCCCCCEEEEecH
Confidence 35689999999999999999999999999999999997664
Q ss_pred ---------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 162 ---------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 162 ---------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
++|.|+||+||+|+.+++|+ +|+||+|||+++|+++||+||||+|+
T Consensus 392 FLQRAYDQliHDvaiqnLPV~faIDRAGi-vG~DG~TH~G~fDls~l~~iPnmvi~ 446 (627)
T COG1154 392 FLQRAYDQLIHDVAIQNLPVTFAIDRAGI-VGADGPTHQGLFDLSFLRCIPNMVIM 446 (627)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEecCcc-cCCCCCccccHHHHHHHhcCCCcEEe
Confidence 77899999999999999999 99999999999999999999999984
No 12
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=2.5e-39 Score=311.27 Aligned_cols=146 Identities=29% Similarity=0.432 Sum_probs=130.4
Q ss_pred HHhcCCeEE-EEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCC-CccccCCcC-------------
Q psy10436 56 LAASNSRVI-ALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIED-KEEWHGKPL------------- 120 (208)
Q Consensus 56 ~~a~G~~vi-~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~-~~~~H~~~~------------- 120 (208)
|++|||+|+ .|||||+ ++|.++|+.+|+.+ +|++||++|+||+|++++|+ +..||+.++
T Consensus 234 f~~~G~~~~~~vDGhd~-----~~l~~al~~ak~~~-~P~~i~~~T~KGkG~~~~e~~~~~~H~~~~~~~~~~~~~~~~~ 307 (617)
T TIGR00204 234 FEELGFNYIGPVDGHDL-----LELIETLKNAKKLK-GPVFLHIQTKKGKGYKPAEKDPIGWHGVGPFDLSTGCLPKSKS 307 (617)
T ss_pred HHHcCCcEEcccCCCCH-----HHHHHHHHHHhcCC-CCEEEEEEecCCCCCchhhcChhhccCCCCCChhhCCcCCCCC
Confidence 999999999 6999999 99999999998764 69999999999999999995 567998542
Q ss_pred --------------------------------CCCcccccccCCCcceeeccccccHHHHHHHHHhCCCcccE-------
Q psy10436 121 --------------------------------GSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF------- 161 (208)
Q Consensus 121 --------------------------------~~~l~~f~~~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~------- 161 (208)
+.++..|+++||+||||+|||||+|+++|+|||+.|++|++
T Consensus 308 ~~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~fP~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~~a~Fl 387 (617)
T TIGR00204 308 ALPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKFPDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIYSTFL 387 (617)
T ss_pred CCccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHCccccccCCccHHHHHHHHHHHHHCCCEEEEEecHHHH
Confidence 12356789999999999999999999999999999996543
Q ss_pred ------EE-eccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 162 ------IR-MGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 162 ------ir-~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
|| ++|++++||+++++|+|+ .|+||+|||++||+++||++|||+|+
T Consensus 388 ~ra~dQi~~~~a~~~lpV~i~~~~~G~-~g~dG~tH~~~~dia~lr~iPgl~V~ 440 (617)
T TIGR00204 388 QRAYDQVVHDVCIQKLPVLFAIDRAGI-VGADGETHQGAFDISYLRCIPNMVIM 440 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEECCCc-CCCCCcccccchHHHHHhcCCCcEEE
Confidence 44 569999999999999999 59999999999999999999999985
No 13
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=4.7e-38 Score=300.74 Aligned_cols=174 Identities=24% Similarity=0.307 Sum_probs=147.2
Q ss_pred cCccccCCCCCCCCCcchHHHHHhh-----h------------------HHHHHHhcCCeEEEE-cCCCCCCchHHHHHH
Q psy10436 26 ISNIKLSSPPSYKKGELVATRLAYG-----I------------------GLAKLAASNSRVIAL-DGDTKNSTFSDKLKK 81 (208)
Q Consensus 26 ~~~~~~~~A~~~kLdNLi~i~D~~G-----~------------------~~~k~~a~G~~vi~V-DGhd~~~~~~~~l~~ 81 (208)
..+|++.+|++++ .|++.+++-++ + ..++|++|||+++.+ ||||+ +++.+
T Consensus 151 ~~~EAln~A~~~k-~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~-----~~l~~ 224 (581)
T PRK12315 151 LALEGLNNAAELK-SNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDI-----ESLIE 224 (581)
T ss_pred hHHHHHHHHHhhC-CCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCH-----HHHHH
Confidence 3456666899999 58888876222 0 135899999999997 99998 99999
Q ss_pred HHHHhhcCCCCCEEEEEEeecCCCCCc-cCCCccccCCcC----------------------------------------
Q psy10436 82 AFHEASQVKGKPTALIAKTFKGKDFPN-IEDKEEWHGKPL---------------------------------------- 120 (208)
Q Consensus 82 Al~~ak~~~~kP~vIi~~T~KG~G~~~-~e~~~~~H~~~~---------------------------------------- 120 (208)
+++++++. ++|++|+++|.||+|+++ +|++.+||+..+
T Consensus 225 a~~~a~~~-~gP~~i~~~T~kG~G~~~~~~~~~~~h~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~i~~ 303 (581)
T PRK12315 225 AFKEVKDI-DHPIVLHIHTLKGKGYQPAEENKEAFHWHMPFDLETGQSKVPASGESYSSVTLDYLLKKIKEGKPVVAINA 303 (581)
T ss_pred HHHHHHhC-CCCEEEEEEeecCCCCChhhcCHHhcCCCCCCCcccCcccCCCCCcCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 99999864 589999999999999975 578889999621
Q ss_pred ----CCCcccccccCCCcceeeccccccHHHHHHHHHhCCCcccE-------------EE-eccccCCCcEEEEecCCcc
Q psy10436 121 ----GSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF-------------IR-MGAISQTNVNFVGSHCGVS 182 (208)
Q Consensus 121 ----~~~l~~f~~~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~-------------ir-~~a~~~~~v~~v~~~~G~~ 182 (208)
+.++.+|+++||+||||+|||||+|+++|+|||++|++|++ || +.|++++||+++++|+|+.
T Consensus 304 ~~~~~~~~~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~fs~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~ 383 (581)
T PRK12315 304 AIPGVFGLKEFRKKYPDQYVDVGIAEQESVAFASGIAANGARPVIFVNSTFLQRAYDQLSHDLAINNNPAVMIVFGGSIS 383 (581)
T ss_pred ccccccCcHHHHHhccccccCCCchHHHHHHHHHHHHHCcCeEEEEeeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc
Confidence 11357788999999999999999999999999999986553 44 3699999999999999995
Q ss_pred ccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 183 IGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 183 ~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
+ ||+|||++||+++||++|||+|+
T Consensus 384 -~-dG~TH~~~~Dia~lr~iPnl~V~ 407 (581)
T PRK12315 384 -G-NDVTHLGIFDIPMISNIPNLVYL 407 (581)
T ss_pred -C-CCccccccHHHHHHhcCCCCEEE
Confidence 5 99999999999999999999985
No 14
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.9e-37 Score=296.24 Aligned_cols=175 Identities=25% Similarity=0.358 Sum_probs=148.8
Q ss_pred cCccccCCCCCCCCCcchHHHHHhh-----------------hHHHHHHhcCCeEE-EEcCCCCCCchHHHHHHHHHHhh
Q psy10436 26 ISNIKLSSPPSYKKGELVATRLAYG-----------------IGLAKLAASNSRVI-ALDGDTKNSTFSDKLKKAFHEAS 87 (208)
Q Consensus 26 ~~~~~~~~A~~~kLdNLi~i~D~~G-----------------~~~~k~~a~G~~vi-~VDGhd~~~~~~~~l~~Al~~ak 87 (208)
..+|++++|++++ +|+++++|.++ +..++|++|||+++ .+||||+ +++.+||++++
T Consensus 156 ~~~Eal~~A~~~~-~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~-----~~l~~al~~a~ 229 (580)
T PRK05444 156 MAFEALNNAGDLK-SDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDL-----DALIETLKNAK 229 (580)
T ss_pred HHHHHHHHHHhhC-CCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCH-----HHHHHHHHHHH
Confidence 3456667999999 89988877322 11258999999999 5899998 99999999988
Q ss_pred cCCCCCEEEEEEeecCCCCCccC-CCccccCCcCC---------------------------------------------
Q psy10436 88 QVKGKPTALIAKTFKGKDFPNIE-DKEEWHGKPLG--------------------------------------------- 121 (208)
Q Consensus 88 ~~~~kP~vIi~~T~KG~G~~~~e-~~~~~H~~~~~--------------------------------------------- 121 (208)
.. ++|++|+++|+||+|++++| ++..||+.++.
T Consensus 230 ~~-~~P~lI~~~T~kg~G~~~~e~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~ 308 (580)
T PRK05444 230 DL-KGPVLLHVVTKKGKGYAPAEADPIKYHGVGKFDPETGEQPKSSKPGKPSYTKVFGETLCELAEKDPKIVAITAAMPE 308 (580)
T ss_pred hC-CCCEEEEEEecCCcCCChhhcCccccCCCCCCCcccCCccccCCCCcccHHHHHHHHHHHHHhhCCCEEEEECCcCC
Confidence 65 58999999999999999887 56789985421
Q ss_pred -CCcccccccCCCcceeeccccccHHHHHHHHHhCCCcccE-------------EEe-ccccCCCcEEEEecCCccccCC
Q psy10436 122 -SSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF-------------IRM-GAISQTNVNFVGSHCGVSIGED 186 (208)
Q Consensus 122 -~~l~~f~~~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~-------------ir~-~a~~~~~v~~v~~~~G~~~g~d 186 (208)
.++.+|+++||+||||+|||||+|+++|+|||++|++|++ ||. .|++++||+++++|+|+ .|+|
T Consensus 309 ~~~~~~f~~~~p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~~~f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~-~g~d 387 (580)
T PRK05444 309 GTGLVKFSKRFPDRYFDVGIAEQHAVTFAAGLATEGLKPVVAIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGL-VGAD 387 (580)
T ss_pred CCCHHHHHHHhhhhccCCChHHHHHHHHHHHHHHCCCeeEEEeeHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCc-CCCC
Confidence 1235688999999999999999999999999999986442 565 69999999999999999 5799
Q ss_pred CCCCCChhHHHHhccCCCceeC
Q psy10436 187 GPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 187 G~TH~~ieDia~~r~lPn~~V~ 208 (208)
|+|||++||+++||+||||+|+
T Consensus 388 G~tH~~~edia~lr~iP~l~V~ 409 (580)
T PRK05444 388 GPTHQGAFDLSYLRCIPNMVIM 409 (580)
T ss_pred CccccccHHHHHHhcCCCCEEE
Confidence 9999999999999999999985
No 15
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=9.4e-37 Score=293.46 Aligned_cols=179 Identities=30% Similarity=0.386 Sum_probs=154.1
Q ss_pred cCcC--ccccCCCCCCCCCcchHHHHHhh-------------hHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc
Q psy10436 24 VDIS--NIKLSSPPSYKKGELVATRLAYG-------------IGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ 88 (208)
Q Consensus 24 ~d~~--~~~~~~A~~~kLdNLi~i~D~~G-------------~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~ 88 (208)
.+++ +|++++|++++|+|+++++|.++ +...++++|||+++.|||||+ ++|.+||+++++
T Consensus 162 ~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~-----~~l~~al~~a~~ 236 (624)
T PRK05899 162 LMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGWFTEDVKKRFEAYGWHVIEVDGHDV-----EAIDAAIEEAKA 236 (624)
T ss_pred hhchHHHHHHHHHHHhCCCCEEEEEECCCCcccccccccccccHHHHhccCCCeEEEECCCCH-----HHHHHHHHHHHh
Confidence 4555 56677999999999998887322 356899999999999999998 999999999986
Q ss_pred CCCCCEEEEEEeecCCCCCccCCCccccCCcCC-----------------------------------------------
Q psy10436 89 VKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLG----------------------------------------------- 121 (208)
Q Consensus 89 ~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~----------------------------------------------- 121 (208)
. ++|++|+++|.||+|++++|+..+||+.+++
T Consensus 237 ~-~~P~vI~v~t~kg~g~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (624)
T PRK05899 237 S-TKPTLIIAKTIIGKGAPNKEGTHKVHGAPLGAEEIAAAKKELGWDYEPFEVPEEVYAHWRKAKERGAKAEAEWNEKFA 315 (624)
T ss_pred c-CCCEEEEEEeEeccCCccccCCCcccCCCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHhhhcCchhHHHHHHhhc
Confidence 5 4899999999999999999999899985320
Q ss_pred ----------------------------------CCccccc------ccCCCcceeeccccccHHHHHHHHHhCC-Cccc
Q psy10436 122 ----------------------------------SSSADVL------KAYPDRYIECFIAEQNLVGVAIGAACRN-RTVP 160 (208)
Q Consensus 122 ----------------------------------~~l~~f~------~~~P~r~~~~GIaE~~mv~~AaGlA~~G-~~~~ 160 (208)
..+..|. ++||+||||+|||||+|+++|+|||++| ++|+
T Consensus 316 ~~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~vg~A~GlA~~G~~~pv 395 (624)
T PRK05899 316 GEKVATRKASGKALNALAKALPELVGGSADLAGSNNTKIKGSKDFAPEDYSGRYIHYGVREFAMAAIANGLALHGGFIPF 395 (624)
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCCccccCcccccccccCccCCCCCeeeeChhHHHHHHHHHHHHHcCCCeEE
Confidence 0122333 5799999999999999999999999999 8544
Q ss_pred E-------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 161 F-------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 161 ~-------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
+ +|..|++++||+++++|+|+++|+||+|||++||+++||++|||+|+
T Consensus 396 ~~t~~~F~~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~ 456 (624)
T PRK05899 396 GGTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVI 456 (624)
T ss_pred EEEcHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCcccHHHHHHHHhCCCcEEE
Confidence 3 77779999999999999999999999999999999999999999985
No 16
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=7.1e-37 Score=301.54 Aligned_cols=180 Identities=21% Similarity=0.235 Sum_probs=152.5
Q ss_pred cCcCccccC--CCCCCCCCcchHHHHHhh---------------hHHHHHHhcCCeEEEE--------------------
Q psy10436 24 VDISNIKLS--SPPSYKKGELVATRLAYG---------------IGLAKLAASNSRVIAL-------------------- 66 (208)
Q Consensus 24 ~d~~~~~~~--~A~~~kLdNLi~i~D~~G---------------~~~~k~~a~G~~vi~V-------------------- 66 (208)
.|+++.|++ +|+++|||||++++|.+. ++..+|++|||+|+.|
T Consensus 230 l~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~ 309 (889)
T TIGR03186 230 MDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALAR 309 (889)
T ss_pred hccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHH
Confidence 466666655 999999999999998432 3468999999999998
Q ss_pred -------------------------------------------------cCCCCCCchHHHHHHHHHHhhcCCCCCEEEE
Q psy10436 67 -------------------------------------------------DGDTKNSTFSDKLKKAFHEASQVKGKPTALI 97 (208)
Q Consensus 67 -------------------------------------------------DGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi 97 (208)
+|||+ ++|.+||++|++.++|||+|+
T Consensus 310 ~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~-----~~i~~A~~~A~~~~~~PTvIl 384 (889)
T TIGR03186 310 AFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDA-----RKLYAAYDRAVRHEGRPTVIL 384 (889)
T ss_pred HHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCH-----HHHHHHHHHHHhCCCCCEEEE
Confidence 69998 999999999998889999999
Q ss_pred EEeecCCCCCccC-CCccccCC-cC----------------------------------------------C--------
Q psy10436 98 AKTFKGKDFPNIE-DKEEWHGK-PL----------------------------------------------G-------- 121 (208)
Q Consensus 98 ~~T~KG~G~~~~e-~~~~~H~~-~~----------------------------------------------~-------- 121 (208)
++|+||+|++..+ ++..+|+. ++ +
T Consensus 385 a~TvkG~G~~~~g~~~~~~H~~~~l~~e~~~~~r~~~g~~~~de~~~~~~~~~~~~~s~~~~~l~~~r~~l~g~~p~r~~ 464 (889)
T TIGR03186 385 AKTMKGFGMGAIGQGRMTTHQQKKLDVEALLAFRDRFRLPLSDADVEQLKFYKPDEDSAEMRYLHARRAALGGYLPRRRT 464 (889)
T ss_pred EEeeecCCCCcccCccccccCcCcCCHHHHHHHHHHcCCCCChHHhhcccccCCCCCCHHHHHHHHHHHHcCCCCCCCCC
Confidence 9999999997755 46788872 10 0
Q ss_pred --------------------C-----------------------------------------------------------
Q psy10436 122 --------------------S----------------------------------------------------------- 122 (208)
Q Consensus 122 --------------------~----------------------------------------------------------- 122 (208)
+
T Consensus 465 ~~~~~~~~p~~~~~~~~~~~~~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~ 544 (889)
T TIGR03186 465 AATHALAVPALPSWGRFALDAEGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYE 544 (889)
T ss_pred CCccccCCCCcchhhhhhccCCCCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCC
Confidence 0
Q ss_pred -----CcccccccCCCcceeeccccccHHH--HHHHHHhC----CCcccE--------------EEeccccCCCcEEEEe
Q psy10436 123 -----SSADVLKAYPDRYIECFIAEQNLVG--VAIGAACR----NRTVPF--------------IRMGAISQTNVNFVGS 177 (208)
Q Consensus 123 -----~l~~f~~~~P~r~~~~GIaE~~mv~--~AaGlA~~----G~~~~~--------------ir~~a~~~~~v~~v~~ 177 (208)
.+..|++.+|+||||+||+||||++ +|||+|++ |++|.+ ||..|+++.+|+++++
T Consensus 545 ~~d~~~~~~y~e~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~ 624 (889)
T TIGR03186 545 PEDLGSMLYYREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAAADQRARGFLIGA 624 (889)
T ss_pred ccchHHHHHHhhcCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHHhhcCCCcEEEEE
Confidence 0123567899999999999999999 99999988 775432 6777999999999999
Q ss_pred cCCc-cccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 178 HCGV-SIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 178 ~~G~-~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
++|+ ++|++|+|||++||+++||++|||+|+
T Consensus 625 ~aG~tTlg~eG~tHq~~eDial~r~iPn~tv~ 656 (889)
T TIGR03186 625 TSGKTTLGGEGLQHQDGTSHLAASTVPNCRAW 656 (889)
T ss_pred CCCccCCCCCcccccchHhHHHHhhCCCCEEE
Confidence 9999 799999999999999999999999985
No 17
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=8.9e-36 Score=293.83 Aligned_cols=180 Identities=19% Similarity=0.181 Sum_probs=154.7
Q ss_pred cCcCccccC--CCCCCCCCcchHHHHHhh---------------hHHHHHHhcCCeEEEE--------------------
Q psy10436 24 VDISNIKLS--SPPSYKKGELVATRLAYG---------------IGLAKLAASNSRVIAL-------------------- 66 (208)
Q Consensus 24 ~d~~~~~~~--~A~~~kLdNLi~i~D~~G---------------~~~~k~~a~G~~vi~V-------------------- 66 (208)
.|+++.|++ +|++++||||+.++|++. ++..+|+++||+|+.|
T Consensus 236 ldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~ 315 (891)
T PRK09405 236 MDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQ 315 (891)
T ss_pred hccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccCCccHHHH
Confidence 466666655 999999999999998432 2458999999999998
Q ss_pred ------c-------------------------------------------CCCCCCchHHHHHHHHHHhhcCCCCCEEEE
Q psy10436 67 ------D-------------------------------------------GDTKNSTFSDKLKKAFHEASQVKGKPTALI 97 (208)
Q Consensus 67 ------D-------------------------------------------Ghd~~~~~~~~l~~Al~~ak~~~~kP~vIi 97 (208)
| |||+ ++|.+||+++++.++||++|+
T Consensus 316 ~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~-----~~i~~A~~~A~~~~~~PtvIi 390 (891)
T PRK09405 316 LMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDP-----RKVYAAYKAAVEHKGQPTVIL 390 (891)
T ss_pred HHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCH-----HHHHHHHHHHHhCCCCCEEEE
Confidence 4 9998 999999999998889999999
Q ss_pred EEeecCCCC-CccCCCccccCC-cCC------------------------------------------------------
Q psy10436 98 AKTFKGKDF-PNIEDKEEWHGK-PLG------------------------------------------------------ 121 (208)
Q Consensus 98 ~~T~KG~G~-~~~e~~~~~H~~-~~~------------------------------------------------------ 121 (208)
++|+||+|+ ++.|++..||+. +++
T Consensus 391 a~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~~~l~~~r~~l~g~~p~r~~ 470 (891)
T PRK09405 391 AKTIKGYGMGEAGEGKNIAHQVKKLDLDDLKHFRDRFNIPISDEQLEKLPYYKPGEDSPEIKYLHERRKALGGYLPARRP 470 (891)
T ss_pred EeceecCCCCcccCCCccccCCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCC
Confidence 999999999 889999999973 100
Q ss_pred -------------------C---------------------------------------Cc-------------------
Q psy10436 122 -------------------S---------------------------------------SS------------------- 124 (208)
Q Consensus 122 -------------------~---------------------------------------~l------------------- 124 (208)
+ ++
T Consensus 471 ~~~~~~~P~~~~~~~~~~~~~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~ 550 (891)
T PRK09405 471 KFEPLEVPALSAFEALLKGSGEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTP 550 (891)
T ss_pred CCCCCCCCChhhHHHhhccCCCCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccc
Confidence 0 01
Q ss_pred ------ccccccCCCcceeeccccccHHH--HHHHHHhC----CCcccE--------------EEe-ccccCCCcEEEEe
Q psy10436 125 ------ADVLKAYPDRYIECFIAEQNLVG--VAIGAACR----NRTVPF--------------IRM-GAISQTNVNFVGS 177 (208)
Q Consensus 125 ------~~f~~~~P~r~~~~GIaE~~mv~--~AaGlA~~----G~~~~~--------------ir~-~a~~~~~v~~v~~ 177 (208)
..|+++||+||||+||+||||++ +|||+|++ |++|.+ ||+ .||++++|+++++
T Consensus 551 ~d~~~~~~yke~~PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt 630 (891)
T PRK09405 551 VDRDQLMYYKESKDGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGT 630 (891)
T ss_pred cccHHHHHHHHcCCCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence 34668999999999999999999 99998888 765432 666 4999999999999
Q ss_pred cCCccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 178 HCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 178 ~~G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
++|++++.+|.|||..+|+++||++|||+|+
T Consensus 631 ~gg~tl~~eG~qHqdg~s~~l~raiPn~tv~ 661 (891)
T PRK09405 631 AGRTTLNGEGLQHEDGHSHILASTIPNCVSY 661 (891)
T ss_pred CccccCCCCcccCCchhhHHHHhhCCCCEEE
Confidence 9999999999999999999999999999985
No 18
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=1.9e-35 Score=292.07 Aligned_cols=180 Identities=21% Similarity=0.215 Sum_probs=149.3
Q ss_pred cCcCccccC--CCCCCCCCcchHHHHHhh---------------hHHHHHHhcCCeEEEE--------------------
Q psy10436 24 VDISNIKLS--SPPSYKKGELVATRLAYG---------------IGLAKLAASNSRVIAL-------------------- 66 (208)
Q Consensus 24 ~d~~~~~~~--~A~~~kLdNLi~i~D~~G---------------~~~~k~~a~G~~vi~V-------------------- 66 (208)
.|+++.|++ +|++++||||++++|++. ++..+|+++||+|+.|
T Consensus 244 l~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~ 323 (896)
T PRK13012 244 MDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVR 323 (896)
T ss_pred hccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHH
Confidence 466665555 999999999999998432 3468999999999998
Q ss_pred ------c-------------------------------------------CCCCCCchHHHHHHHHHHhhcCCCCCEEEE
Q psy10436 67 ------D-------------------------------------------GDTKNSTFSDKLKKAFHEASQVKGKPTALI 97 (208)
Q Consensus 67 ------D-------------------------------------------Ghd~~~~~~~~l~~Al~~ak~~~~kP~vIi 97 (208)
| |||+ ++|.+||+++++.++||++|+
T Consensus 324 ~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~-----~~i~~A~~~a~~~~~~PtvIl 398 (896)
T PRK13012 324 RFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDP-----RKVYAAYAAAVRHKGQPTVIL 398 (896)
T ss_pred HHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCH-----HHHHHHHHHHHhCCCCCEEEE
Confidence 8 9998 999999999998889999999
Q ss_pred EEeecCCCCC-ccCCCccccC-CcC----------------C--------------------------------------
Q psy10436 98 AKTFKGKDFP-NIEDKEEWHG-KPL----------------G-------------------------------------- 121 (208)
Q Consensus 98 ~~T~KG~G~~-~~e~~~~~H~-~~~----------------~-------------------------------------- 121 (208)
++|+||+|++ +.|++..||+ .++ +
T Consensus 399 a~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~~g~p~~d~~~~~~pf~~p~~~~~~~~~l~~r~~~l~g~~P~r~~ 478 (896)
T PRK13012 399 AKTKKGYGMGEAGEGRMTTHQQKKLDVEALKAFRDRFRLPLSDEQLEQLPFYKPAEDSPEMRYLHARRAALGGYLPRRRT 478 (896)
T ss_pred EEeeecCCCCcccCCCcccccCCCCCHHHHHHHHHHcCCCCChhhhccCCCcCCccccHHHHHHHHHHHHhcCcCCcccc
Confidence 9999999998 6789999997 210 0
Q ss_pred -------------------C---------------------------------Cc-------------------------
Q psy10436 122 -------------------S---------------------------------SS------------------------- 124 (208)
Q Consensus 122 -------------------~---------------------------------~l------------------------- 124 (208)
+ ++
T Consensus 479 ~~~~l~~p~~~~~~~~~~~~~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~ 558 (896)
T PRK13012 479 AAPPLPVPPLSAFAQFALGAGGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEP 558 (896)
T ss_pred cccccCCCchhhHHHhhcccCCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccc
Confidence 0 00
Q ss_pred ------ccccccCCCcceeeccccccHHH--HHHHHHhC--CC-cccE---------------EEec-cccCCCcEEEEe
Q psy10436 125 ------ADVLKAYPDRYIECFIAEQNLVG--VAIGAACR--NR-TVPF---------------IRMG-AISQTNVNFVGS 177 (208)
Q Consensus 125 ------~~f~~~~P~r~~~~GIaE~~mv~--~AaGlA~~--G~-~~~~---------------ir~~-a~~~~~v~~v~~ 177 (208)
..|++.||+|||++||+||+|++ +|+|+|++ |. .+|| +|.+ +++..+|+++++
T Consensus 559 ~d~~~~~~yke~~pgR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T 638 (896)
T PRK13012 559 EDAGSLLYYREAKDGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGAT 638 (896)
T ss_pred cchhHHhhhhhCCCCcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEe
Confidence 12447899999999999999988 88888655 44 2455 5554 667788999999
Q ss_pred cCCccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 178 HCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 178 ~~G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
|+|+++|+||+|||++||+++||+||||+|+
T Consensus 639 ~gg~tlg~dG~THQ~~eslal~RaIPN~~V~ 669 (896)
T PRK13012 639 AGRTTLGGEGLQHQDGHSHLLASTIPNCRAY 669 (896)
T ss_pred CcccccCCCCCCCcchHhHHHHHhCCCCEEE
Confidence 9999999999999999999999999999985
No 19
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=8.7e-35 Score=281.43 Aligned_cols=148 Identities=21% Similarity=0.295 Sum_probs=127.2
Q ss_pred HHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCC-CCCEEEEEEeecCCCCCccCCCccccCC-c-----------
Q psy10436 54 AKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVK-GKPTALIAKTFKGKDFPNIEDKEEWHGK-P----------- 119 (208)
Q Consensus 54 ~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~-~kP~vIi~~T~KG~G~~~~e~~~~~H~~-~----------- 119 (208)
+.|+++|++|+. +||||+ ++|.++|+.+|+.+ .+|++||+.|.|||....-+.... +.. .
T Consensus 320 ~lFe~lG~~Y~GpvDGHdi-----~~Li~~l~~~k~~~~~~PvlvHv~T~KGkd~~tg~~~~~-~~~~s~~~~f~~aL~~ 393 (701)
T PLN02225 320 TLFEELGLYYIGPVDGHNI-----EDLVCVLREVSSLDSMGPVLVHVITEENRDAETGKNIMV-KDRRTYSDCFVEALVM 393 (701)
T ss_pred CcHHHcCCeEECccCCCCH-----HHHHHHHHHHHcCCCCCCEEEEEEecCCCCCCCCCcCCC-CCCcCHHHHHHHHHHH
Confidence 579999999998 899999 99999999999875 589999999999996544331111 111 0
Q ss_pred ----------------CCCCcccccccCCCcceeeccccccHHHHHHHHHhCCCcccE-------------EE-eccccC
Q psy10436 120 ----------------LGSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF-------------IR-MGAISQ 169 (208)
Q Consensus 120 ----------------~~~~l~~f~~~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~-------------ir-~~a~~~ 169 (208)
.++++..|+++||+||||+|||||+||++|||||++|++|++ || ++|+++
T Consensus 394 la~~D~~Iv~Itadm~~gtgl~~f~~~fPdRffDvGIAEQhaVt~AAGLA~~G~kPvv~iystFlqRAyDQI~~Dval~~ 473 (701)
T PLN02225 394 EAEKDRDIVVVHAGMEMDASLITFQERFPDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIPSAFLQRAYDQVVHDVDRQR 473 (701)
T ss_pred HHhhCCCEEEEeCCccCcccHHHHHHHccccccccCccHHHHHHHHHHHHHCCCEEEEEeehhHHHHHHHHHHHHHHhhc
Confidence 145688999999999999999999999999999999997553 44 579999
Q ss_pred CCcEEEEecCCccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 170 TNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 170 ~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
+||+++++++|+ +|+||+|||++|||++||+||||+|+
T Consensus 474 lpV~~vid~aGl-vg~DG~TH~g~~Dia~lr~IPnm~V~ 511 (701)
T PLN02225 474 KAVRFVITSAGL-VGSDGPVQCGAFDIAFMSSLPNMIAM 511 (701)
T ss_pred CCceEEEECCcc-CCCCCccccccHHHHHHhcCCCCEEE
Confidence 999999999999 68999999999999999999999985
No 20
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.2e-32 Score=240.12 Aligned_cols=119 Identities=43% Similarity=0.641 Sum_probs=108.5
Q ss_pred cchHHHHHhhhHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcC
Q psy10436 41 ELVATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPL 120 (208)
Q Consensus 41 NLi~i~D~~G~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~ 120 (208)
|...+|+.+|+.+.++...+.+++.+++|..+|+.+..
T Consensus 5 ~~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~------------------------------------------ 42 (312)
T COG3958 5 NTESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGY------------------------------------------ 42 (312)
T ss_pred cchHHHHHHHHHHHHHHhcCCCEEEEecccccccchhH------------------------------------------
Confidence 55678999999999999999999999999887665443
Q ss_pred CCCcccccccCCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEe-ccccCCCcEEEEecCCcccc
Q psy10436 121 GSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRM-GAISQTNVNFVGSHCGVSIG 184 (208)
Q Consensus 121 ~~~l~~f~~~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~-~a~~~~~v~~v~~~~G~~~g 184 (208)
|.++||+||||+||+||+|+++|||||++|++ || ||+ .||+++|||++++|+|+++|
T Consensus 43 ------f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk~-Pfv~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g 115 (312)
T COG3958 43 ------FAKEFPDRFFNVGIAEQDMVGTAAGLALAGKK-PFVSTFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYG 115 (312)
T ss_pred ------HHHhCchhheecchHHHHHHHHHHHHHhcCCC-ceeechHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccC
Confidence 45599999999999999999999999999995 54 776 49999999999999999999
Q ss_pred CCCCCCCChhHHHHhccCCCceeC
Q psy10436 185 EDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 185 ~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
+||+|||++|||++||.||||+|+
T Consensus 116 ~dG~sHq~~EDiaimR~lpn~~V~ 139 (312)
T COG3958 116 EDGSSHQALEDIAIMRGLPNMTVI 139 (312)
T ss_pred CCCccchhHHHHHHHhcCCCceEE
Confidence 999999999999999999999985
No 21
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=99.91 E-value=6.5e-25 Score=177.71 Aligned_cols=85 Identities=45% Similarity=0.730 Sum_probs=77.8
Q ss_pred cccccccCCCcceeeccccccHHHHHHHHHhCCCcccE-------------EE-eccccCCCcEEEEecCCccccCCCCC
Q psy10436 124 SADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF-------------IR-MGAISQTNVNFVGSHCGVSIGEDGPS 189 (208)
Q Consensus 124 l~~f~~~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~-------------ir-~~a~~~~~v~~v~~~~G~~~g~dG~T 189 (208)
+..|+++||+||+|+||+||+|+++|+|||+.|++|.+ +| +.|++++||+++++++|++.|++|+|
T Consensus 30 ~~~~~~~~p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~f~~ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~t 109 (156)
T cd07033 30 LDKFAKKFPDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTFSFFLQRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPT 109 (156)
T ss_pred cHHHHHhCCCCeEEeChhHHHHHHHHHHHHHCCCeEEEEECHHHHHHHHHHHHHHHhccCCCeEEEEECCcEecCCCCcc
Confidence 45577799999999999999999999999999985432 77 67999999999999999999999999
Q ss_pred CCChhHHHHhccCCCceeC
Q psy10436 190 QMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 190 H~~ieDia~~r~lPn~~V~ 208 (208)
||++||++++|++||++|+
T Consensus 110 H~~~~~~a~~~~iPg~~v~ 128 (156)
T cd07033 110 HQGIEDIALLRAIPNMTVL 128 (156)
T ss_pred cchHHHHHHhcCCCCCEEE
Confidence 9999999999999999985
No 22
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.83 E-value=5.8e-21 Score=157.14 Aligned_cols=82 Identities=27% Similarity=0.306 Sum_probs=70.2
Q ss_pred cccccccCCC-cceeeccccccHHHHHHHHHhCCCcccE--------------EEe-cccc--------CCCcEEEEecC
Q psy10436 124 SADVLKAYPD-RYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRM-GAIS--------QTNVNFVGSHC 179 (208)
Q Consensus 124 l~~f~~~~P~-r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir~-~a~~--------~~~v~~v~~~~ 179 (208)
+..|+++||+ ||||+||+||+|+++|+|||++|++|.+ +|. .|++ ++||++++.++
T Consensus 34 ~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~g 113 (167)
T cd07036 34 TKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNG 113 (167)
T ss_pred hHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCC
Confidence 3567789999 9999999999999999999999995442 554 4776 49999999888
Q ss_pred CccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 180 GVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 180 G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
|. +.+|+|| +.||+++||+||||+|+
T Consensus 114 g~--~~~G~th-s~~~~a~lr~iPg~~V~ 139 (167)
T cd07036 114 GG--IGGGAQH-SQSLEAWFAHIPGLKVV 139 (167)
T ss_pred CC--CCcChhh-hhhHHHHHhcCCCCEEE
Confidence 84 6899996 58999999999999985
No 23
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=99.83 E-value=4.2e-22 Score=164.17 Aligned_cols=117 Identities=38% Similarity=0.573 Sum_probs=88.4
Q ss_pred hHHHHHhhhHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCC
Q psy10436 43 VATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGS 122 (208)
Q Consensus 43 i~i~D~~G~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~ 122 (208)
+.++++.++.+.++...+.+++.++.|..++++
T Consensus 3 ~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~----------------------------------------------- 35 (178)
T PF02779_consen 3 ISMRDAFGEALAELAEEDPRVVVIGADLGGGTF----------------------------------------------- 35 (178)
T ss_dssp EEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHT-----------------------------------------------
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCcchh-----------------------------------------------
Confidence 356777788887777778888887766531110
Q ss_pred CcccccccC---CCcceeeccccccHHHHHHHHHhCC-CcccE------------------EE-eccccCCCcEEEEecC
Q psy10436 123 SSADVLKAY---PDRYIECFIAEQNLVGVAIGAACRN-RTVPF------------------IR-MGAISQTNVNFVGSHC 179 (208)
Q Consensus 123 ~l~~f~~~~---P~r~~~~GIaE~~mv~~AaGlA~~G-~~~~~------------------ir-~~a~~~~~v~~v~~~~ 179 (208)
...+...+ |+||||+||+||+|+++|+|||+.| .++|| ++ +.+++++||+ +++++
T Consensus 36 -~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~ 113 (178)
T PF02779_consen 36 -GVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRA 113 (178)
T ss_dssp -STTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEE
T ss_pred -hhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeec
Confidence 11122233 5699999999999999999999999 35665 33 4578999999 99999
Q ss_pred CccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 180 GVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 180 G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
|+++|.+|+|||+.||+++||++|||+|+
T Consensus 114 g~~~~~~G~tH~s~~d~~~~~~iPg~~v~ 142 (178)
T PF02779_consen 114 GLGYGGDGGTHHSIEDEAILRSIPGMKVV 142 (178)
T ss_dssp SGGGSTTGTTTSSSSHHHHHHTSTTEEEE
T ss_pred Ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999985
No 24
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=99.82 E-value=1.7e-20 Score=170.72 Aligned_cols=119 Identities=21% Similarity=0.360 Sum_probs=92.1
Q ss_pred hHHHHHhhhHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCC
Q psy10436 43 VATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGS 122 (208)
Q Consensus 43 i~i~D~~G~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~ 122 (208)
+.+++++++++.++.+.+.+++.+.+|...+.. . +.
T Consensus 27 ~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g--~----~~-------------------------------------- 62 (356)
T PLN02683 27 MTVRDALNSALDEEMSADPKVFIMGEEVGEYQG--A----YK-------------------------------------- 62 (356)
T ss_pred cHHHHHHHHHHHHHHhhCcCEEEEccccccccC--c----cc--------------------------------------
Confidence 578889999888888888898888666421111 0 00
Q ss_pred CcccccccC-CCcceeeccccccHHHHHHHHHhCCCcccE--------------EE-eccccC--------CCcEEEEec
Q psy10436 123 SSADVLKAY-PDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IR-MGAISQ--------TNVNFVGSH 178 (208)
Q Consensus 123 ~l~~f~~~~-P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir-~~a~~~--------~~v~~v~~~ 178 (208)
....|.++| |+||||+||+||+|+++|+|||++|++|++ || +.|+++ +||++++.+
T Consensus 63 ~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~ 142 (356)
T PLN02683 63 ITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN 142 (356)
T ss_pred hhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC
Confidence 012234455 999999999999999999999999996542 55 458887 999999999
Q ss_pred CCccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 179 CGVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 179 ~G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
|..+| +|+|||..+ +++||+||||+|+
T Consensus 143 -G~~~g-~G~tH~~~~-~a~lr~iPnl~V~ 169 (356)
T PLN02683 143 -GAAAG-VGAQHSQCF-AAWYSSVPGLKVL 169 (356)
T ss_pred -CCCCC-CCCccccCH-HHHHhcCCCCEEE
Confidence 66577 599998888 7999999999985
No 25
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=99.82 E-value=2.5e-20 Score=167.75 Aligned_cols=83 Identities=24% Similarity=0.325 Sum_probs=69.6
Q ss_pred cccccccCCC-cceeeccccccHHHHHHHHHhCCCcccE--------------EEe-ccccC------CCcEEEEecCCc
Q psy10436 124 SADVLKAYPD-RYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRM-GAISQ------TNVNFVGSHCGV 181 (208)
Q Consensus 124 l~~f~~~~P~-r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir~-~a~~~------~~v~~v~~~~G~ 181 (208)
+.+|+++||+ ||||+||+||+|+++|+|||++|++|++ ||. .|+++ +|+.+++.++|+
T Consensus 41 ~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~ 120 (327)
T CHL00144 41 TKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGG 120 (327)
T ss_pred HHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEeehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCC
Confidence 3567789999 9999999999999999999999996543 554 57775 566666678888
Q ss_pred cccCCCCCC-CChhHHHHhccCCCceeC
Q psy10436 182 SIGEDGPSQ-MALEDIAMFRTIPACLVF 208 (208)
Q Consensus 182 ~~g~dG~TH-~~ieDia~~r~lPn~~V~ 208 (208)
..+.+|+|| |++| ++||+||||+|+
T Consensus 121 ~~~~~G~tHs~~~e--a~~~~iPgl~V~ 146 (327)
T CHL00144 121 VGRQLGAEHSQRLE--SYFQSVPGLQIV 146 (327)
T ss_pred CCCCCCccccccHH--HHHhcCCCCEEE
Confidence 777899999 7886 999999999985
No 26
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=99.81 E-value=2.7e-20 Score=167.40 Aligned_cols=82 Identities=22% Similarity=0.275 Sum_probs=69.5
Q ss_pred ccccccC-CCcceeeccccccHHHHHHHHHhCCCcccE--------------EE-eccccC------CCcEEEEecCCcc
Q psy10436 125 ADVLKAY-PDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IR-MGAISQ------TNVNFVGSHCGVS 182 (208)
Q Consensus 125 ~~f~~~~-P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir-~~a~~~------~~v~~v~~~~G~~ 182 (208)
..|+++| |+||||+|||||+|+++|+|||++|++|++ || +.|+++ +||.+++.++|..
T Consensus 42 ~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~ 121 (327)
T PRK09212 42 QGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFMTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGA 121 (327)
T ss_pred HHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEeehhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCC
Confidence 4577799 999999999999999999999999996542 44 457775 6777777777777
Q ss_pred ccCCCCCC-CChhHHHHhccCCCceeC
Q psy10436 183 IGEDGPSQ-MALEDIAMFRTIPACLVF 208 (208)
Q Consensus 183 ~g~dG~TH-~~ieDia~~r~lPn~~V~ 208 (208)
++.+|+|| |++| ++||++|||+|+
T Consensus 122 ~~~~G~tH~~~~e--a~~r~iP~l~V~ 146 (327)
T PRK09212 122 AARVAAQHSQCYA--AWYSHIPGLKVV 146 (327)
T ss_pred CCCCCcccccCHH--HHHhcCCCCEEE
Confidence 89999999 6765 999999999985
No 27
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=99.81 E-value=7e-20 Score=166.56 Aligned_cols=128 Identities=25% Similarity=0.280 Sum_probs=95.4
Q ss_pred CCCCCCcchHHHHHhhhHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCcc
Q psy10436 35 PSYKKGELVATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEE 114 (208)
Q Consensus 35 ~~~kLdNLi~i~D~~G~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~ 114 (208)
...+-...+.+++++++++.++.+.+.+++.+.++...+- ...
T Consensus 27 ~~~~~~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G---~~~---------------------------------- 69 (355)
T PTZ00182 27 ESKGATVKMNVREAINSALDEELARDPKVFVLGEDVAQYG---GVY---------------------------------- 69 (355)
T ss_pred cccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccC---Cch----------------------------------
Confidence 3344444457788888888888788888888765531000 000
Q ss_pred ccCCcCCCCcccccccC-CCcceeeccccccHHHHHHHHHhCCCcccE--------------EEe-ccccC------CCc
Q psy10436 115 WHGKPLGSSSADVLKAY-PDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRM-GAISQ------TNV 172 (208)
Q Consensus 115 ~H~~~~~~~l~~f~~~~-P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir~-~a~~~------~~v 172 (208)
..+.+|+++| |+||||+||+||+|+++|+|||++|++|++ ||. +|+++ +|+
T Consensus 70 -------~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v 142 (355)
T PTZ00182 70 -------KCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDC 142 (355)
T ss_pred -------hhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEEechhhHHHHHHHHHHHHHHHhhcccCCCccC
Confidence 0134567799 999999999999999999999999996543 443 57764 678
Q ss_pred EEEEecCCccccCCCCCC-CChhHHHHhccCCCceeC
Q psy10436 173 NFVGSHCGVSIGEDGPSQ-MALEDIAMFRTIPACLVF 208 (208)
Q Consensus 173 ~~v~~~~G~~~g~dG~TH-~~ieDia~~r~lPn~~V~ 208 (208)
.+++.+.|..+|++|+|| |++| ++||+||||+|+
T Consensus 143 ~vv~~~~~g~~g~~G~tHs~~~e--a~lr~iPn~~V~ 177 (355)
T PTZ00182 143 PIVIRGPNGAVGHGGAYHSQSFE--AYFAHVPGLKVV 177 (355)
T ss_pred CEEEEeCCCCCCCCCCcccchHH--HHHhcCCCCEEE
Confidence 888888888899999999 7665 999999999985
No 28
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.80 E-value=7.4e-21 Score=171.65 Aligned_cols=91 Identities=35% Similarity=0.482 Sum_probs=76.1
Q ss_pred ccccCCCCCCCCCcchHHHHHh-----h--------hHHHHHHhcCCeEEEE-cCCCCCCchHHHHHHHHHHhhcCCCCC
Q psy10436 28 NIKLSSPPSYKKGELVATRLAY-----G--------IGLAKLAASNSRVIAL-DGDTKNSTFSDKLKKAFHEASQVKGKP 93 (208)
Q Consensus 28 ~~~~~~A~~~kLdNLi~i~D~~-----G--------~~~~k~~a~G~~vi~V-DGhd~~~~~~~~l~~Al~~ak~~~~kP 93 (208)
+|+.++|++++|+||++++|.+ | ++..||++|||+|+.| ||||+ ++|.+||++++..++||
T Consensus 161 ~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~~~~~~~k~~a~Gw~v~~v~dGhd~-----~~i~~A~~~a~~~~~kP 235 (332)
T PF00456_consen 161 WEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVFSEDIAKKFEAFGWNVIEVCDGHDV-----EAIYAAIEEAKASKGKP 235 (332)
T ss_dssp HHHHHHHHHTT-TTEEEEEEEESEETTEEGGGTHHSHHHHHHHHTT-EEEEEEETTBH-----HHHHHHHHHHHHSTSS-
T ss_pred HHHHHHHHHhCCCCEEEEEecCCcccCCCcccccchHHHHHHHHhhhhhcccccCcHH-----HHHHHHHHHHHhcCCCC
Confidence 4445599999999999999843 2 3568999999999997 99998 99999999999998999
Q ss_pred EEEEEEeecCCCCCccCCCccccCCcCCCC
Q psy10436 94 TALIAKTFKGKDFPNIEDKEEWHGKPLGSS 123 (208)
Q Consensus 94 ~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~ 123 (208)
++|+++|+||+|+|++|++.+|||.+++.+
T Consensus 236 ~~Ii~~TvkG~G~~~~e~~~~~Hg~~l~~e 265 (332)
T PF00456_consen 236 TVIIARTVKGKGVPFMEGTAKWHGSPLTEE 265 (332)
T ss_dssp EEEEEEE-TTTTSTTTTTSGGGTSS--HHH
T ss_pred ceeecceEEecCchhhcccchhhccCCcHH
Confidence 999999999999999999999999998754
No 29
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.80 E-value=1.1e-19 Score=147.79 Aligned_cols=77 Identities=39% Similarity=0.503 Sum_probs=65.9
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE-------------EEeccccCCCcEEEEec-CCccccCCCCCCCChhHH
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF-------------IRMGAISQTNVNFVGSH-CGVSIGEDGPSQMALEDI 196 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~-------------ir~~a~~~~~v~~v~~~-~G~~~g~dG~TH~~ieDi 196 (208)
+|+||+|+||+||+|+++|+|||++|++|.+ +|..+.++ ++.+++++ +|+..|++|+|||++||+
T Consensus 47 ~~~R~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~f~~~a~~~~~~~~~~~-~~~~v~~~~~g~~~g~~G~tH~~~~~~ 125 (168)
T smart00861 47 GPGRVIDTGIAEQAMVGFAAGLALAGLRPVVAIFFTFFDRAKDQIRSDGAMG-RVPVVVRHDSGGGVGEDGPTHHSQEDE 125 (168)
T ss_pred CCccEEEcCcCHHHHHHHHHHHHHcCCCcEEEeeHHHHHHHHHHHHHhCccc-CCCEEEEecCccccCCCCccccchhHH
Confidence 5677999999999999999999999984332 66654444 77778788 579999999999999999
Q ss_pred HHhccCCCceeC
Q psy10436 197 AMFRTIPACLVF 208 (208)
Q Consensus 197 a~~r~lPn~~V~ 208 (208)
++||+|||++|+
T Consensus 126 ~~~~~iP~~~v~ 137 (168)
T smart00861 126 ALLRAIPGLKVV 137 (168)
T ss_pred HHHhcCCCcEEE
Confidence 999999999985
No 30
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.79 E-value=1.4e-19 Score=169.61 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=70.8
Q ss_pred ccccccC-CCcceeeccccccHHHHHHHHHhCCCcccE--------------EEe-cc--------ccCCCcEEEEecCC
Q psy10436 125 ADVLKAY-PDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRM-GA--------ISQTNVNFVGSHCG 180 (208)
Q Consensus 125 ~~f~~~~-P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir~-~a--------~~~~~v~~v~~~~G 180 (208)
..|+++| |+||||+||+||+|+++|+|||++|++|++ ||. .| ++++||+|++.++|
T Consensus 180 ~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~ 259 (464)
T PRK11892 180 QGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGA 259 (464)
T ss_pred hHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEEehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCC
Confidence 3466789 999999999999999999999999997553 442 46 99999999999999
Q ss_pred ccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 181 VSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 181 ~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
.+. .|+ ||+.||+++||+||||+|+
T Consensus 260 ~~~--~G~-hhs~~d~a~~~~iPgl~V~ 284 (464)
T PRK11892 260 AAR--VAA-QHSQDYAAWYSHIPGLKVV 284 (464)
T ss_pred CCC--CCC-ccccCHHHHHhhCCCCEEE
Confidence 843 777 9999999999999999985
No 31
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.77 E-value=5.2e-19 Score=174.33 Aligned_cols=179 Identities=21% Similarity=0.242 Sum_probs=140.8
Q ss_pred cCcCccccC--CCCCCCCCcchHHHHHhh---------------hHHHHHHhcCCeEEEE--------------------
Q psy10436 24 VDISNIKLS--SPPSYKKGELVATRLAYG---------------IGLAKLAASNSRVIAL-------------------- 66 (208)
Q Consensus 24 ~d~~~~~~~--~A~~~kLdNLi~i~D~~G---------------~~~~k~~a~G~~vi~V-------------------- 66 (208)
.|+++.|++ +|+++|||||++++|.++ ++..+|+++||+|+.|
T Consensus 230 ldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~ 309 (885)
T TIGR00759 230 MDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVK 309 (885)
T ss_pred hccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHH
Confidence 466666665 999999999999998432 2458999999999998
Q ss_pred -------------------------------------------------cCCCCCCchHHHHHHHHHHhhcCCCCCEEEE
Q psy10436 67 -------------------------------------------------DGDTKNSTFSDKLKKAFHEASQVKGKPTALI 97 (208)
Q Consensus 67 -------------------------------------------------DGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi 97 (208)
+|||+ ++|.+||+++++.++||++|+
T Consensus 310 ~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~-----~~I~~A~~~A~~~~grPTvIl 384 (885)
T TIGR00759 310 LMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDP-----RKVYAAYAAAQEHKGQPTVIL 384 (885)
T ss_pred HHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCH-----HHHHHHHHHHHhCCCCCEEEE
Confidence 59998 999999999998888999999
Q ss_pred EEeecCCCCC-ccCCCccccCC-cCC------------------------------------------------------
Q psy10436 98 AKTFKGKDFP-NIEDKEEWHGK-PLG------------------------------------------------------ 121 (208)
Q Consensus 98 ~~T~KG~G~~-~~e~~~~~H~~-~~~------------------------------------------------------ 121 (208)
++|+||+|++ +.|++..||+. +++
T Consensus 385 A~TvKG~G~~~~~e~~n~~H~~k~l~~e~l~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~~y~~~rr~~Lgg~~p~R~~ 464 (885)
T TIGR00759 385 AKTIKGYGMGDAAESRNTAHQVKKLEVDALKNFRDRFELPLSDAQVEELPYYHPGEGSPEVRYLLARRQALGGYLPARRT 464 (885)
T ss_pred EeeeecCCCChhhCCCcccccCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHHHHHHHHHHHhCCCCCCcCC
Confidence 9999999998 88999999983 310
Q ss_pred -------------------C---------------------------------------Cccc-----------------
Q psy10436 122 -------------------S---------------------------------------SSAD----------------- 126 (208)
Q Consensus 122 -------------------~---------------------------------------~l~~----------------- 126 (208)
+ +++.
T Consensus 465 ~~~~l~vP~l~~~~~~~~~~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartfgm~g~f~~~gIy~~~gq~y~p 544 (885)
T TIGR00759 465 FAEHLTVPALEFFGALLKGSGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFGMEGLFRQIGIYSPHGQTYTP 544 (885)
T ss_pred CCCCCCCCCchhhHHHhcCCCCCCccHHHHHHHHHHHHhcCcccccceeecCCCccccCChHHhhcccCccCCCCccCCc
Confidence 0 0111
Q ss_pred --------ccccCCCcceeeccccccHHHH--HHHHHhC--CCc-ccE---------EE-----e-ccccCCCcEEEEec
Q psy10436 127 --------VLKAYPDRYIECFIAEQNLVGV--AIGAACR--NRT-VPF---------IR-----M-GAISQTNVNFVGSH 178 (208)
Q Consensus 127 --------f~~~~P~r~~~~GIaE~~mv~~--AaGlA~~--G~~-~~~---------ir-----~-~a~~~~~v~~v~~~ 178 (208)
+++.--+|.++-||+|.++++. |+|.|.+ |.. +|| .| . +|++...-.++|+-
T Consensus 545 ~d~~~~~~y~e~~~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgfqR~gD~~waa~d~~argfl~g~t 624 (885)
T TIGR00759 545 VDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQRIGDLCWAAADQRARGFLLGAT 624 (885)
T ss_pred cchhhhhhcccCCCCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccccchHHHHHHHhhhcCCceEeccC
Confidence 1122235899999999998875 7776644 541 343 45 1 37899999999999
Q ss_pred CCc-cccCCCCCCCChhHHHHhccCCCcee
Q psy10436 179 CGV-SIGEDGPSQMALEDIAMFRTIPACLV 207 (208)
Q Consensus 179 ~G~-~~g~dG~TH~~ieDia~~r~lPn~~V 207 (208)
+|. +....|-.||..----+-.++||++-
T Consensus 625 aGrtTL~gEGlqHqdg~s~~~~~~~P~~~~ 654 (885)
T TIGR00759 625 AGRTTLNGEGLQHEDGHSLLQAATIPNCIA 654 (885)
T ss_pred CCcccCCCccccCccccchHHHhcCCCcee
Confidence 999 78889999998887777888999864
No 32
>PRK05261 putative phosphoketolase; Provisional
Probab=99.72 E-value=1.1e-17 Score=164.19 Aligned_cols=168 Identities=18% Similarity=0.212 Sum_probs=126.7
Q ss_pred CCCCCCCCCcchHHHHHhh---------------hHHHHHHhcCCeEEEEcCCCCCCchHHHHHHH--------HH----
Q psy10436 32 SSPPSYKKGELVATRLAYG---------------IGLAKLAASNSRVIALDGDTKNSTFSDKLKKA--------FH---- 84 (208)
Q Consensus 32 ~~A~~~kLdNLi~i~D~~G---------------~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~A--------l~---- 84 (208)
.++.+++++|++.++|.+| ++.++|+++||+++.|||||+ +++.++ ++
T Consensus 185 ~~~~~~~~g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~-----~av~~a~a~al~~~i~~i~~ 259 (785)
T PRK05261 185 KFLNPATDGAVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDP-----ADMHQEMAAALDTAIEEIRA 259 (785)
T ss_pred hhcccccCCCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCH-----HHHHHHHHHHHHHHHHHHHH
Confidence 4888899999988887443 356899999999999999998 555555 44
Q ss_pred ---HhhcCC--CCCE--EEEEEeecCCCCCc------cCCCccccCCcCCCC----------------------------
Q psy10436 85 ---EASQVK--GKPT--ALIAKTFKGKDFPN------IEDKEEWHGKPLGSS---------------------------- 123 (208)
Q Consensus 85 ---~ak~~~--~kP~--vIi~~T~KG~G~~~------~e~~~~~H~~~~~~~---------------------------- 123 (208)
+||... .||+ +|+++|.||+|-|. .|+....|+.|++..
T Consensus 260 iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g~p~~~dg~~~eGs~raHqvPL~~~~~~~~~~~~L~~wl~sy~p~elF~~~g~ 339 (785)
T PRK05261 260 IQKEAREGGDTTRPRWPMIVLRTPKGWTGPKEVDGKPIEGSWRAHQVPLANVRDNPEHLDLLEDWLRSYRPEELFDEDGR 339 (785)
T ss_pred HHHHHHhCCCCCCCCceEEEEECCccCCCCcccCCcccCCCchhhcCCCCCcccCHHHHHHHHHHhhcCChhhhcCCCCc
Confidence 444331 5999 99999999999874 677777888764200
Q ss_pred -----------------------------------c---------------------------------cccc-------
Q psy10436 124 -----------------------------------S---------------------------------ADVL------- 128 (208)
Q Consensus 124 -----------------------------------l---------------------------------~~f~------- 128 (208)
+ ..|+
T Consensus 340 l~~~~~~l~p~g~~r~~~~P~ang~~~~~~l~lp~~~~~~~~~~~~g~~~~~atr~~g~~l~~v~~~np~~frvf~pDe~ 419 (785)
T PRK05261 340 LKPELAALAPKGDRRMGANPHANGGLLLRDLRLPDFRDYAVPVGKPGAVMAEATRVLGKYLRDVIKLNPDNFRIFGPDET 419 (785)
T ss_pred hhHHHHHhccCchhhhcCCchhcCCcCccccCCCchHhhcccccCCCccccccHHHHHHHHHHHHHhCCCceEEEcCCcc
Confidence 0 0010
Q ss_pred ------ccC--------------------CCcceeeccccccHHHHHHHHHhCCCcccE------E--------------
Q psy10436 129 ------KAY--------------------PDRYIECFIAEQNLVGVAIGAACRNRTVPF------I-------------- 162 (208)
Q Consensus 129 ------~~~--------------------P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~------i-------------- 162 (208)
..| -+|+++ |++|+.|.+++.|+++.|+++.| +
T Consensus 420 ~SNrl~~~f~~t~r~~~~~~~~~d~~~~~~Grvie-~LsEh~~~g~~~Gy~LtG~~~~~~sYeaF~~ivd~m~~q~~kw~ 498 (785)
T PRK05261 420 ASNRLQAVFEVTDRQWMAEILPYDEHLAPDGRVME-VLSEHLCEGWLEGYLLTGRHGFFSSYEAFIHIVDSMFNQHAKWL 498 (785)
T ss_pred hhhccHhHHhhhccccccccCCcccccCCCCCeee-eecHHHHHHHHHHHHhcCCCcceecHHHHHHHHHHHHHHHHHHH
Confidence 111 169999 99999999999999999986544 1
Q ss_pred Eec-------cccCCCcEEEEecCCccccCCCCCCCC---hhHHHHhccCCCceeC
Q psy10436 163 RMG-------AISQTNVNFVGSHCGVSIGEDGPSQMA---LEDIAMFRTIPACLVF 208 (208)
Q Consensus 163 r~~-------a~~~~~v~~v~~~~G~~~g~dG~TH~~---ieDia~~r~lPn~~V~ 208 (208)
|.. -+.- +.++.||.++..|+||+|||+ +|.++.+|+ |++.|+
T Consensus 499 r~~~~~~wr~~~~s--Ln~l~Ts~~~~qghNG~THQ~Pg~ie~l~~~r~-~~~rV~ 551 (785)
T PRK05261 499 KVAREIPWRKPIPS--LNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKP-DVIRVY 551 (785)
T ss_pred HHHhhcccCCCCcc--eeEEeecceeecCCCCCCCCCchHHHHHHhcCC-CcceEE
Confidence 300 0111 339999999999999999999 999999999 999885
No 33
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.72 E-value=1.9e-18 Score=147.63 Aligned_cols=76 Identities=32% Similarity=0.402 Sum_probs=69.0
Q ss_pred ccCcCccccC--CCCCCCCCcchHHHH-----Hhh---------hHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHh
Q psy10436 23 KVDISNIKLS--SPPSYKKGELVATRL-----AYG---------IGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEA 86 (208)
Q Consensus 23 ~~d~~~~~~~--~A~~~kLdNLi~i~D-----~~G---------~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~a 86 (208)
..|++|+|++ +|+||+||||++++| .+| +...||+||||+|++|||||+ ++|.+|++++
T Consensus 152 El~EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~-----~~i~~a~~~~ 226 (243)
T COG3959 152 ELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDI-----EEIVEALEKA 226 (243)
T ss_pred ccccccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCH-----HHHHHHHHhh
Confidence 4688999988 899999999999998 334 356899999999999999999 9999999999
Q ss_pred hcCCCCCEEEEEEeecC
Q psy10436 87 SQVKGKPTALIAKTFKG 103 (208)
Q Consensus 87 k~~~~kP~vIi~~T~KG 103 (208)
+..++||++|||+|+||
T Consensus 227 ~~~~~rP~~IIa~Tvkg 243 (243)
T COG3959 227 KGSKGRPTVIIAKTVKG 243 (243)
T ss_pred hccCCCCeEEEEecccC
Confidence 99888999999999997
No 34
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.71 E-value=4.1e-18 Score=156.02 Aligned_cols=94 Identities=23% Similarity=0.206 Sum_probs=81.9
Q ss_pred cCcCccccC--CCCCCCCCcchHHHHHhh---------------hHHHHHHhcCCeEEEEc-------------------
Q psy10436 24 VDISNIKLS--SPPSYKKGELVATRLAYG---------------IGLAKLAASNSRVIALD------------------- 67 (208)
Q Consensus 24 ~d~~~~~~~--~A~~~kLdNLi~i~D~~G---------------~~~~k~~a~G~~vi~VD------------------- 67 (208)
.++++.|++ +|++++|+||++++|.++ ++..||++|||+|+.||
T Consensus 159 l~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~ 238 (386)
T cd02017 159 MDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQ 238 (386)
T ss_pred cccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHH
Confidence 456666665 999999999999998322 35689999999999997
Q ss_pred --------------------------------------------------CCCCCCchHHHHHHHHHHhhcCCCCCEEEE
Q psy10436 68 --------------------------------------------------GDTKNSTFSDKLKKAFHEASQVKGKPTALI 97 (208)
Q Consensus 68 --------------------------------------------------Ghd~~~~~~~~l~~Al~~ak~~~~kP~vIi 97 (208)
|||+ ++|.+||++++..++||++|+
T Consensus 239 ~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~~~~~~~gGhD~-----~~i~~A~~~a~~~~~kPt~Ii 313 (386)
T cd02017 239 RMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHDP-----RKVYAAYKKAVEHKGKPTVIL 313 (386)
T ss_pred HHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhccCCCCH-----HHHHHHHHHHHhCCCCCeEEE
Confidence 9998 999999999998888999999
Q ss_pred EEeecCCCCC-ccCCCccccC-CcCCC
Q psy10436 98 AKTFKGKDFP-NIEDKEEWHG-KPLGS 122 (208)
Q Consensus 98 ~~T~KG~G~~-~~e~~~~~H~-~~~~~ 122 (208)
++|+||+|++ ++|+...||+ .+++.
T Consensus 314 a~TikG~G~~~~~e~~~~~h~~~~~~~ 340 (386)
T cd02017 314 AKTIKGYGLGAAGEGRNHAHQVKKMTE 340 (386)
T ss_pred EeCeecCCCChhccCCcchhcCCCCCH
Confidence 9999999999 6999999997 66654
No 35
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.47 E-value=3.4e-14 Score=123.30 Aligned_cols=94 Identities=37% Similarity=0.507 Sum_probs=80.9
Q ss_pred cCcC--ccccCCCCCCCCCcchHHHHHhh--------------hHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhh
Q psy10436 24 VDIS--NIKLSSPPSYKKGELVATRLAYG--------------IGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEAS 87 (208)
Q Consensus 24 ~d~~--~~~~~~A~~~kLdNLi~i~D~~G--------------~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak 87 (208)
.+++ ++++.+|++++|+|+++++|.++ +...++++|||+++.|||||+ ++|.+||++++
T Consensus 139 ~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~-----~~l~~al~~a~ 213 (255)
T cd02012 139 LQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDV-----EEILAALEEAK 213 (255)
T ss_pred ccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCH-----HHHHHHHHHHH
Confidence 4443 56666999999999999887332 346899999999999999998 99999999998
Q ss_pred cCCCCCEEEEEEeecCCCCCccCCCccccCCcCCC
Q psy10436 88 QVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGS 122 (208)
Q Consensus 88 ~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~ 122 (208)
+..++|++|+++|.||+|++++|++..||+.+++.
T Consensus 214 ~~~~~P~~I~~~t~kg~g~~~~e~~~~~H~~~~~~ 248 (255)
T cd02012 214 KSKGKPTLIIAKTIKGKGVPFMENTAKWHGKPLGE 248 (255)
T ss_pred HcCCCCEEEEEEeecccccCccCCCccccCCCCCH
Confidence 76579999999999999999999999999987753
No 36
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.00 E-value=1.1e-10 Score=98.09 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=61.6
Q ss_pred ccccCCCCCCCCCcchHHHHHhh--------hHHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEE
Q psy10436 28 NIKLSSPPSYKKGELVATRLAYG--------IGLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIA 98 (208)
Q Consensus 28 ~~~~~~A~~~kLdNLi~i~D~~G--------~~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~ 98 (208)
+|++++|+++ ++|++.++|.++ +...+|+++||++.. +||||+ +++.+|++++++ .++|++|++
T Consensus 115 ~Eal~~A~~~-~~~li~vvdnN~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~-----~~l~~a~~~a~~-~~~P~~I~~ 187 (195)
T cd02007 115 FEALNNAGYL-KSNMIVILNDNEMSISPNVGTPGNLFEELGFRYIGPVDGHNI-----EALIKVLKEVKD-LKGPVLLHV 187 (195)
T ss_pred HHHHHHHHHh-CCCEEEEEECCCcccCCCCCCHHHHHHhcCCCccceECCCCH-----HHHHHHHHHHHh-CCCCEEEEE
Confidence 3666688998 889988887433 356899999999996 999998 999999999987 468999999
Q ss_pred EeecCCCC
Q psy10436 99 KTFKGKDF 106 (208)
Q Consensus 99 ~T~KG~G~ 106 (208)
+|+||||+
T Consensus 188 ~T~kg~g~ 195 (195)
T cd02007 188 VTKKGKGY 195 (195)
T ss_pred EEecccCc
Confidence 99999996
No 37
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=98.84 E-value=7.2e-09 Score=81.73 Aligned_cols=76 Identities=25% Similarity=0.343 Sum_probs=65.6
Q ss_pred cCCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChh
Q psy10436 130 AYPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALE 194 (208)
Q Consensus 130 ~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ie 194 (208)
+.|++.+..++.|++++++|.|+|+.|. +++ ++.++..++||+++.++.|.. +..+.+||..+
T Consensus 32 ~~~~~~~~~~~~E~~a~~~A~G~a~~~~-~~v~~~~~gpg~~~~~~~l~~a~~~~~Pvl~i~~~~~~~-~~~~~~~q~~~ 109 (154)
T cd06586 32 EGDKRIIDTVIHELGAAGAAAGYARAGG-PPVVIVTSGTGLLNAINGLADAAAEHLPVVFLIGARGIS-AQAKQTFQSMF 109 (154)
T ss_pred ccCCceEEeeCCHHHHHHHHHHHHHhhC-CEEEEEcCCCcHHHHHHHHHHHHhcCCCEEEEeCCCChh-hhccCcccccC
Confidence 3468999999999999999999999998 564 455567899999999999984 55688999999
Q ss_pred HHHHhccCCCcee
Q psy10436 195 DIAMFRTIPACLV 207 (208)
Q Consensus 195 Dia~~r~lPn~~V 207 (208)
|++++|.+|++.+
T Consensus 110 ~~~~~~~~~~~~~ 122 (154)
T cd06586 110 DLGMYRSIPEANI 122 (154)
T ss_pred HHHHHHHhhheEE
Confidence 9999999999865
No 38
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=98.79 E-value=5.1e-09 Score=101.62 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=53.6
Q ss_pred CcceeeccccccHHHH--HHHHHhC--CCc-ccE---------EE-----e-ccccCCC-cEEEEecCCccccCCCCCCC
Q psy10436 133 DRYIECFIAEQNLVGV--AIGAACR--NRT-VPF---------IR-----M-GAISQTN-VNFVGSHCGVSIGEDGPSQM 191 (208)
Q Consensus 133 ~r~~~~GIaE~~mv~~--AaGlA~~--G~~-~~~---------ir-----~-~a~~~~~-v~~v~~~~G~~~g~dG~TH~ 191 (208)
++.++-||.|.++++. |+|.+.+ |.. +|| .| . +|+|... ..+.+|.++.+....|--|+
T Consensus 562 GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfqRigD~~waA~dq~ARgFLlgaTagrtTLngEGlqHe 641 (887)
T COG2609 562 GQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQRIGDLLWAAGDQDARGFLLGATAGRTTLNGEGLQHE 641 (887)
T ss_pred cchHHhhhccccHHHHHHHHhcccccCCccceeeeeeechhhhhhHHHHHHHHHhhhhcceeEeecCCCceeCccccccc
Confidence 5789999999999885 7777644 431 343 34 1 3777776 78889999999888899998
Q ss_pred ChhHHHHhccCCCce
Q psy10436 192 ALEDIAMFRTIPACL 206 (208)
Q Consensus 192 ~ieDia~~r~lPn~~ 206 (208)
..----+=-++||+.
T Consensus 642 dghS~l~~~~ip~~~ 656 (887)
T COG2609 642 DGHSHLQAMTIPNCI 656 (887)
T ss_pred cccchhhhhcCCCcc
Confidence 766444555678764
No 39
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=98.59 E-value=2e-07 Score=83.47 Aligned_cols=78 Identities=31% Similarity=0.453 Sum_probs=62.6
Q ss_pred ccccCC-CcceeeccccccHHHHHHHHHhCCCcccE---------------------EE--eccccCCCcEEEEecCCcc
Q psy10436 127 VLKAYP-DRYIECFIAEQNLVGVAIGAACRNRTVPF---------------------IR--MGAISQTNVNFVGSHCGVS 182 (208)
Q Consensus 127 f~~~~P-~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------------ir--~~a~~~~~v~~v~~~~G~~ 182 (208)
+.++|+ +|+||+.|+|.+.+|+|.|+|+.|++|+. +| ...-..+|+++.+..+|-
T Consensus 42 L~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiqf~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g- 120 (324)
T COG0022 42 LQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQFADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGG- 120 (324)
T ss_pred HHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEEecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCC-
Confidence 556885 59999999999999999999999997653 44 236678999999877765
Q ss_pred ccCCCCCC-CChhHHHHhccCCCceeC
Q psy10436 183 IGEDGPSQ-MALEDIAMFRTIPACLVF 208 (208)
Q Consensus 183 ~g~dG~TH-~~ieDia~~r~lPn~~V~ 208 (208)
.+ .|..| |++| +++.++|+++|+
T Consensus 121 ~~-~~~~HSqs~e--a~f~h~PGlKVV 144 (324)
T COG0022 121 IG-GGAQHSQSLE--ALFAHIPGLKVV 144 (324)
T ss_pred CC-chhhccCCHH--HHHhcCCCceEE
Confidence 22 45566 5677 999999999984
No 40
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=98.06 E-value=5.5e-06 Score=71.67 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=55.3
Q ss_pred ccCCCCCCCCCcchHHHHHhh---------------hHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhh-------
Q psy10436 30 KLSSPPSYKKGELVATRLAYG---------------IGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEAS------- 87 (208)
Q Consensus 30 ~~~~A~~~kLdNLi~i~D~~G---------------~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak------- 87 (208)
+..++.+++++|++.++|.++ ++.++|++|||+++.|||||+.... +.+.+|++.+.
T Consensus 103 a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~~~yG~~~~~VDG~D~~av~-~~~a~a~~~~~~~i~~~~ 181 (227)
T cd02011 103 SNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALFRGYGYEPYFVEGDDPETMH-QAMAATLDWAIEEIKAIQ 181 (227)
T ss_pred hhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHHHhCCCceEEECCCCHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 334899999999999887443 3568999999999999999982221 33333443221
Q ss_pred ----cC--CCCCE--EEEEEeecCCCCCc
Q psy10436 88 ----QV--KGKPT--ALIAKTFKGKDFPN 108 (208)
Q Consensus 88 ----~~--~~kP~--vIi~~T~KG~G~~~ 108 (208)
.. ..||. +|+++|-||..-|.
T Consensus 182 ~~~~~~~~~~~~~wp~~~~~~~kg~~~p~ 210 (227)
T cd02011 182 KRAREGGDASRPRWPMIVLRTPKGWTGPK 210 (227)
T ss_pred HHHHhCCCCCCCCCCEEEEeCCCCCCCCc
Confidence 11 24675 99999999997764
No 41
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=97.59 E-value=6e-05 Score=66.58 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=35.1
Q ss_pred HHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEe
Q psy10436 54 AKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKT 100 (208)
Q Consensus 54 ~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T 100 (208)
+.|+++|++|+. +||||+ ++|.++|+.+|+. .+|++||+.|
T Consensus 229 ~lFe~LG~~Y~GPiDGHdl-----~~Li~~l~~~K~~-~gPvllHV~T 270 (270)
T PF13292_consen 229 NLFEELGFDYIGPIDGHDL-----EELIEVLENAKDI-DGPVLLHVIT 270 (270)
T ss_dssp CCCHHCT-EEEEEEETT-H-----HHHHHHHHHHCCS-SSEEEEEEE-
T ss_pred HHHHHcCCeEEeccCCCCH-----HHHHHHHHHHhcC-CCCEEEEEeC
Confidence 569999999998 899998 9999999999987 5799999998
No 42
>KOG0524|consensus
Probab=97.41 E-value=8.4e-05 Score=66.12 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=60.0
Q ss_pred cccC-CCcceeeccccccHHHHHHHHHhCCCcccE----------------------EEe-ccccCCCcEEEEecCCccc
Q psy10436 128 LKAY-PDRYIECFIAEQNLVGVAIGAACRNRTVPF----------------------IRM-GAISQTNVNFVGSHCGVSI 183 (208)
Q Consensus 128 ~~~~-P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~----------------------ir~-~a~~~~~v~~v~~~~G~~~ 183 (208)
.++| +.|.+|..|.|....|+|.|-|+.|++|++ ..+ .+.+++|+.|.|.++--
T Consensus 76 ~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~efMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPnG~~-- 153 (359)
T KOG0524|consen 76 LDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICEFMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPNGAA-- 153 (359)
T ss_pred HHhcCCceeecCcchhcccchhhHhHHHhCcchhhhhhcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCCCcc--
Confidence 3466 789999999999999999999999997663 123 35678898888876432
Q ss_pred cCCCCCC-CChhHHHHhccCCCceeC
Q psy10436 184 GEDGPSQ-MALEDIAMFRTIPACLVF 208 (208)
Q Consensus 184 g~dG~TH-~~ieDia~~r~lPn~~V~ 208 (208)
..-|+-| |.++ +++.++|+++|+
T Consensus 154 ~gv~AqHSQ~f~--~wy~siPGlkvv 177 (359)
T KOG0524|consen 154 AGVAAQHSQDFA--SWYGSIPGLKVV 177 (359)
T ss_pred cchhhhhhhhhH--HHhccCCCceEe
Confidence 3357777 5555 999999999885
No 43
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=96.03 E-value=0.021 Score=52.68 Aligned_cols=101 Identities=21% Similarity=0.223 Sum_probs=54.9
Q ss_pred CCCCCcchHHHHH-hhhHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHH----hhc---------CCCCCE--EEEEE
Q psy10436 36 SYKKGELVATRLA-YGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHE----ASQ---------VKGKPT--ALIAK 99 (208)
Q Consensus 36 ~~kLdNLi~i~D~-~G~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~----ak~---------~~~kP~--vIi~~ 99 (208)
-||..|-+++-.. +.++...|+-.||+.+.|+|+|.... -.++.++++. .+. ...||. +|+++
T Consensus 201 G~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~-h~~ma~ald~a~~~I~~iq~~Ar~~~~~~~prwPmivlR 279 (379)
T PF09364_consen 201 GYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADM-HQAMAAALDWALEEIRAIQKAARSGNPAYRPRWPMIVLR 279 (379)
T ss_dssp SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHH-HHHHHHHHHHHHHHHHHHHHHHTT--SS----EEEEEEE
T ss_pred CccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcEEEEE
Confidence 4666776655443 33566899999999999999986211 1233333332 221 123565 99999
Q ss_pred eecCCCCCc------cCCCccccCCcCCCC---------cccccccC-CCccee
Q psy10436 100 TFKGKDFPN------IEDKEEWHGKPLGSS---------SADVLKAY-PDRYIE 137 (208)
Q Consensus 100 T~KG~G~~~------~e~~~~~H~~~~~~~---------l~~f~~~~-P~r~~~ 137 (208)
|.||.+.|. .|++-..|.+|+... |.+-.+.| |+..||
T Consensus 280 tPKGWtgP~~vdG~~iEGt~raHQVPl~~~~~~~~~l~~Le~Wl~SY~PeeLFd 333 (379)
T PF09364_consen 280 TPKGWTGPKEVDGKPIEGTFRAHQVPLPDVRTDPEHLRLLEDWLRSYRPEELFD 333 (379)
T ss_dssp --TTTTS-SEETTEE-TTSGGGSS-SSTTTTTSHHHHHHHHHHHHHT-GGGTB-
T ss_pred CCcccCCccccCCccccCcceeeeccccccCCCHHHHHHHHHHHHhCCHHHhcC
Confidence 999999985 477777788887642 23333455 777776
No 44
>KOG0525|consensus
Probab=95.90 E-value=0.021 Score=50.57 Aligned_cols=79 Identities=25% Similarity=0.375 Sum_probs=57.9
Q ss_pred cccccC-CCcceeeccccccHHHHHHHHHhCCCccc----E-----------------EE--eccccCC-CcEEEEecCC
Q psy10436 126 DVLKAY-PDRYIECFIAEQNLVGVAIGAACRNRTVP----F-----------------IR--MGAISQT-NVNFVGSHCG 180 (208)
Q Consensus 126 ~f~~~~-P~r~~~~GIaE~~mv~~AaGlA~~G~~~~----~-----------------ir--~~a~~~~-~v~~v~~~~G 180 (208)
.++++| .+|+||...+||.++++..|+|..|.... | .| ....-++ ..++..+.+-
T Consensus 79 gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaeiqfadyifpafdqivneaakfryrsgnqfncg~ltir~p~ga 158 (362)
T KOG0525|consen 79 GLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGA 158 (362)
T ss_pred chHHHhCccccccCchhhcccceechhhhhcccceEEEEeeccccchhHHHHHHHHHhheeccCCccccCceEEeccccc
Confidence 355677 58999999999999999999999997422 1 33 2333344 3556666655
Q ss_pred ccccCCCCCC-CChhHHHHhccCCCceeC
Q psy10436 181 VSIGEDGPSQ-MALEDIAMFRTIPACLVF 208 (208)
Q Consensus 181 ~~~g~dG~TH-~~ieDia~~r~lPn~~V~ 208 (208)
+ |+.|--| |+.| |++...|++.|+
T Consensus 159 v--ghg~~yhsqspe--aff~h~pgikvv 183 (362)
T KOG0525|consen 159 V--GHGALYHSQSPE--AFFCHVPGIKVV 183 (362)
T ss_pred c--ccccccccCCch--hheecCCCceEE
Confidence 4 7777788 7777 999999999874
No 45
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=95.80 E-value=0.0063 Score=57.33 Aligned_cols=76 Identities=17% Similarity=0.060 Sum_probs=54.9
Q ss_pred ccccCCCCCCCCCcchHHHHHh--------------hhHHHHHHhcCCeEEEEcCCCCCCchHHHHH----HHHHHhhcC
Q psy10436 28 NIKLSSPPSYKKGELVATRLAY--------------GIGLAKLAASNSRVIALDGDTKNSTFSDKLK----KAFHEASQV 89 (208)
Q Consensus 28 ~~~~~~A~~~kLdNLi~i~D~~--------------G~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~----~Al~~ak~~ 89 (208)
.|.+.+|+.++|. ++.++..+ .+...+.+++|+..+.|||+|. .++. +|++.+...
T Consensus 241 ~EaLn~A~~~~LP-vIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~-----~av~~a~~~A~~~Ar~g 314 (433)
T PLN02374 241 FECLNMAALWKLP-IVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDV-----LKVREVAKEAIERARRG 314 (433)
T ss_pred HHHHHHHHHhCCC-EEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCH-----HHHHHHHHHHHHHHHHc
Confidence 3456688999985 33333211 1356789999999999999997 5555 455555543
Q ss_pred CCCCEEEEEEeecCCCCCccC
Q psy10436 90 KGKPTALIAKTFKGKDFPNIE 110 (208)
Q Consensus 90 ~~kP~vIi~~T~KG~G~~~~e 110 (208)
++|++|.+.|.+.+|.+...
T Consensus 315 -~gP~LIe~~tyR~~GHs~~D 334 (433)
T PLN02374 315 -EGPTLVECETYRFRGHSLAD 334 (433)
T ss_pred -CCCEEEEEEEEecCCcCCCC
Confidence 58999999999999987654
No 46
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=95.65 E-value=0.007 Score=55.73 Aligned_cols=81 Identities=10% Similarity=0.032 Sum_probs=53.6
Q ss_pred cCcCcccc--CCCCCCCCCcchHHHHHhh----h------HHHHHHhcCCe--EEEEcCCCCCCchHHHHHHHHHHhhcC
Q psy10436 24 VDISNIKL--SSPPSYKKGELVATRLAYG----I------GLAKLAASNSR--VIALDGDTKNSTFSDKLKKAFHEASQV 89 (208)
Q Consensus 24 ~d~~~~~~--~~A~~~kLdNLi~i~D~~G----~------~~~k~~a~G~~--vi~VDGhd~~~~~~~~l~~Al~~ak~~ 89 (208)
..++..|+ .+|+.++|. ++.+++.++ . ....+.+.+|. .+.|||||+ .++.++++.+.+.
T Consensus 172 ~~eG~~~Ealn~A~~~~lP-vvfvveNN~~aist~~~~~~~~~~~~~~~~~~p~~~VDG~D~-----~av~~a~~~A~~~ 245 (362)
T PLN02269 172 ANQGQLFEALNIAALWDLP-VIFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDV-----LAVKQACKFAKEH 245 (362)
T ss_pred cccCHHHHHHHHhhccCcC-EEEEEeCCCEeccCchhhhccchHHHHhhcCCCeEEECCCCH-----HHHHHHHHHHHHH
Confidence 34554444 489999994 555554322 0 11234445555 477999998 8888888776531
Q ss_pred --CCCCEEEEEEeecCCCCCccC
Q psy10436 90 --KGKPTALIAKTFKGKDFPNIE 110 (208)
Q Consensus 90 --~~kP~vIi~~T~KG~G~~~~e 110 (208)
+++|++|.+.|.+-.|-+...
T Consensus 246 aR~~gP~lIe~~tyR~~gHs~~D 268 (362)
T PLN02269 246 ALSNGPIVLEMDTYRYHGHSMSD 268 (362)
T ss_pred HHhCCCEEEEEecCcCCCcCCCC
Confidence 278999999999999876444
No 47
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=95.48 E-value=0.012 Score=53.70 Aligned_cols=77 Identities=19% Similarity=0.052 Sum_probs=53.9
Q ss_pred ccCCCCCCCCCcchHHHHHh--------------hhHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEE
Q psy10436 30 KLSSPPSYKKGELVATRLAY--------------GIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTA 95 (208)
Q Consensus 30 ~~~~A~~~kLdNLi~i~D~~--------------G~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~v 95 (208)
++.+|..++|. ++.++..+ .+...+.+++|+..+.|||+|.-... +.+.+|++.++.. ++|++
T Consensus 177 aln~A~~~~LP-vifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~-~a~~~A~~~ar~~-~gP~l 253 (341)
T CHL00149 177 CLNMAVLWKLP-IIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVR-EVAKEAVERARQG-DGPTL 253 (341)
T ss_pred HHHHHhhcCCC-EEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHH-HHHHHHHHHHHhC-CCCEE
Confidence 46688889884 43333211 13568899999999999999971111 2344566666543 58999
Q ss_pred EEEEeecCCCCCcc
Q psy10436 96 LIAKTFKGKDFPNI 109 (208)
Q Consensus 96 Ii~~T~KG~G~~~~ 109 (208)
|.+.|.+.+|-+..
T Consensus 254 Iev~tyR~~gHs~~ 267 (341)
T CHL00149 254 IEALTYRFRGHSLA 267 (341)
T ss_pred EEEEEecCCCcCCC
Confidence 99999999998765
No 48
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=95.14 E-value=0.073 Score=47.20 Aligned_cols=77 Identities=19% Similarity=0.110 Sum_probs=55.1
Q ss_pred ccccCCCCCCCCCcchHHHH-----------H--hhhHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc---CCC
Q psy10436 28 NIKLSSPPSYKKGELVATRL-----------A--YGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ---VKG 91 (208)
Q Consensus 28 ~~~~~~A~~~kLdNLi~i~D-----------~--~G~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~---~~~ 91 (208)
++.+.+|..++|.-+.++.+ . ..+...+.+++|+..+.|||+|+ +++.++++++.+ ..+
T Consensus 144 ~E~l~~A~~~~lPvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~-----~~v~~a~~~A~~~ar~~~ 218 (293)
T cd02000 144 HEALNFAALWKLPVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDV-----LAVYEAAKEAVERARAGG 218 (293)
T ss_pred HHHHHHHHhhCCCEEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCH-----HHHHHHHHHHHHHHHccC
Confidence 46677888898842222221 0 11345788999999999999997 777777766542 346
Q ss_pred CCEEEEEEeecCCCCCcc
Q psy10436 92 KPTALIAKTFKGKDFPNI 109 (208)
Q Consensus 92 kP~vIi~~T~KG~G~~~~ 109 (208)
+|++|.+.|.+.+|-+..
T Consensus 219 ~P~lIev~~~r~~gHs~~ 236 (293)
T cd02000 219 GPTLIEAVTYRLGGHSTS 236 (293)
T ss_pred CCEEEEEEEeccCCCCCC
Confidence 899999999999997743
No 49
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=94.61 E-value=0.034 Score=56.92 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=54.4
Q ss_pred ccccC-CCcceeeccccccHHHHHHHHHhCCCccc--E-------EE------e---cc-----ccCCCcEEEEecCCcc
Q psy10436 127 VLKAY-PDRYIECFIAEQNLVGVAIGAACRNRTVP--F-------IR------M---GA-----ISQTNVNFVGSHCGVS 182 (208)
Q Consensus 127 f~~~~-P~r~~~~GIaE~~mv~~AaGlA~~G~~~~--~-------ir------~---~a-----~~~~~v~~v~~~~G~~ 182 (208)
+.++| |.|.+|..|+|.+++|++.|+|+.|.++. + +- + .. ....++++...|+ +
T Consensus 640 l~~~~g~~rV~nsplSE~a~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p~G-~- 717 (929)
T TIGR00239 640 LHNGQGAFRVWNSVLSEESVLGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLLPHG-Y- 717 (929)
T ss_pred hhhhcCCeeEEcCCccHHHHHHHHHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEecCc-C-
Confidence 34566 79999999999999999999999997653 2 00 0 00 1125677887777 3
Q ss_pred ccCCCCCCC--ChhHHHHhccCCCceeC
Q psy10436 183 IGEDGPSQM--ALEDIAMFRTIPACLVF 208 (208)
Q Consensus 183 ~g~dG~TH~--~ieDia~~r~lPn~~V~ 208 (208)
+.-|+-|+ .+|=.=.|.+.|||+|+
T Consensus 718 -~g~g~~hsS~~~E~~lql~~~~gl~Vv 744 (929)
T TIGR00239 718 -EGQGPEHSSGRLERFLQLAAEQNMQVC 744 (929)
T ss_pred -CCCCchhhccCHHHHHHHhCCCCCEEE
Confidence 33455664 57733333899999984
No 50
>KOG0523|consensus
Probab=94.29 E-value=0.082 Score=51.57 Aligned_cols=65 Identities=46% Similarity=0.549 Sum_probs=59.5
Q ss_pred CCCCCCC--CCccCcCccccCCCCCCCCCcc-hHHHHHhhhHHHHHHhcCCeEEEEcCCCCCCchHHH
Q psy10436 14 DKNLVSD--APKVDISNIKLSSPPSYKKGEL-VATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDK 78 (208)
Q Consensus 14 ~~~~~~~--~~~~d~~~~~~~~A~~~kLdNL-i~i~D~~G~~~~k~~a~G~~vi~VDGhd~~~~~~~~ 78 (208)
.+.+++| +|.+.+.++|+..-++|+..+. +++|+.+++.+.++.....+++.++|+.-.|++++-
T Consensus 288 p~~~~~~~~~~~~~i~~~~~~~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~td~ 355 (632)
T KOG0523|consen 288 PEKPVEDARAISVRIPKIWEKSLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLTDF 355 (632)
T ss_pred CCcccccccccccCcCccccccCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchhhh
Confidence 4567888 8999999999999999999888 999999999999999999999999999998888643
No 51
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=93.92 E-value=0.065 Score=48.79 Aligned_cols=81 Identities=19% Similarity=0.130 Sum_probs=54.3
Q ss_pred ccccCCCCCCCCCcchHHHH-------------HhhhHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCE
Q psy10436 28 NIKLSSPPSYKKGELVATRL-------------AYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPT 94 (208)
Q Consensus 28 ~~~~~~A~~~kLdNLi~i~D-------------~~G~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~ 94 (208)
.+.+..|..++|.-+.++.+ ...+...+.++||+..+.|||+|.-... +.+.+|++.+... ++|+
T Consensus 162 ~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~-~a~~~A~~~a~~~-~gP~ 239 (341)
T TIGR03181 162 YEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVY-AVTKEAVERARSG-GGPT 239 (341)
T ss_pred HHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHH-HHHHHHHHHHHcC-CCCE
Confidence 45667889999852221111 1123567889999999999999961111 3455566666543 5899
Q ss_pred EEEEEeecCCCCCccC
Q psy10436 95 ALIAKTFKGKDFPNIE 110 (208)
Q Consensus 95 vIi~~T~KG~G~~~~e 110 (208)
+|.+.|.+-.|-....
T Consensus 240 lIev~t~R~~gH~~~D 255 (341)
T TIGR03181 240 LIEAVTYRLGPHTTAD 255 (341)
T ss_pred EEEEEeecCCCCCCCC
Confidence 9999999988866554
No 52
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=93.81 E-value=0.071 Score=54.67 Aligned_cols=77 Identities=13% Similarity=0.165 Sum_probs=53.3
Q ss_pred ccccC-CCcceeeccccccHHHHHHHHHhCCCcc--cE-------EE------e---c-c----ccCCCcEEEEecCCcc
Q psy10436 127 VLKAY-PDRYIECFIAEQNLVGVAIGAACRNRTV--PF-------IR------M---G-A----ISQTNVNFVGSHCGVS 182 (208)
Q Consensus 127 f~~~~-P~r~~~~GIaE~~mv~~AaGlA~~G~~~--~~-------ir------~---~-a----~~~~~v~~v~~~~G~~ 182 (208)
+.++| |.|.+|..|+|.+++|++.|+|+.|.++ ++ +- + . + ....++++...|++-
T Consensus 638 l~~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~~p~G~~- 716 (924)
T PRK09404 638 LSEGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLPHGYE- 716 (924)
T ss_pred hhhhcCCceEecCcchHHHHHHHHHHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCccCeEEEecCcCC-
Confidence 44566 8999999999999999999999999964 32 11 0 0 1 113568888888732
Q ss_pred ccCCCCCCC--ChhHHHHhccC--CCceeC
Q psy10436 183 IGEDGPSQM--ALEDIAMFRTI--PACLVF 208 (208)
Q Consensus 183 ~g~dG~TH~--~ieDia~~r~l--Pn~~V~ 208 (208)
| -|+-|+ .+| +++... |||+|+
T Consensus 717 -g-~g~~hsS~~~E--~~l~~~~~~gl~Vv 742 (924)
T PRK09404 717 -G-QGPEHSSARLE--RFLQLCAEDNMQVC 742 (924)
T ss_pred -C-CChhhhccCHH--HHHHhCCCCCCEEE
Confidence 4 355554 567 666444 799884
No 53
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=93.80 E-value=0.063 Score=48.30 Aligned_cols=76 Identities=13% Similarity=0.008 Sum_probs=52.9
Q ss_pred cccCCCCCCCCCcchHHHH-H------------hhhHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc---CCCC
Q psy10436 29 IKLSSPPSYKKGELVATRL-A------------YGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ---VKGK 92 (208)
Q Consensus 29 ~~~~~A~~~kLdNLi~i~D-~------------~G~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~---~~~k 92 (208)
+.+.+|+.+++.-+.++.+ . ..+...+.+++|+..+.|||+|. .++.++++++-+ ..++
T Consensus 151 ealn~A~~~~lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~-----~av~~a~~~A~~~ar~~~g 225 (315)
T TIGR03182 151 ESFNMAALWKLPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDV-----LAVREAAKEAVERARSGKG 225 (315)
T ss_pred HHHHHhhccCcCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCH-----HHHHHHHHHHHHHHHccCC
Confidence 4566788888843222222 1 11356788999999999999997 666666665532 2458
Q ss_pred CEEEEEEeecCCCCCcc
Q psy10436 93 PTALIAKTFKGKDFPNI 109 (208)
Q Consensus 93 P~vIi~~T~KG~G~~~~ 109 (208)
|++|.+.|..-.|-...
T Consensus 226 P~lIe~~t~R~~gHs~~ 242 (315)
T TIGR03182 226 PILLEMKTYRFRGHSMS 242 (315)
T ss_pred CEEEEEeCCcCCCCCCC
Confidence 99999999998887654
No 54
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=92.97 E-value=0.26 Score=38.98 Aligned_cols=41 Identities=24% Similarity=0.277 Sum_probs=34.0
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEe
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKT 100 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T 100 (208)
....++++||+++.+++ . +++.++++++.+ .++|++|.++|
T Consensus 128 ~~~~a~~~G~~~~~v~~--~-----~~l~~a~~~a~~-~~~p~~i~v~~ 168 (168)
T cd00568 128 FAALAEAYGAKGVRVED--P-----EDLEAALAEALA-AGGPALIEVKT 168 (168)
T ss_pred HHHHHHHCCCeEEEECC--H-----HHHHHHHHHHHh-CCCCEEEEEEC
Confidence 45788999999998864 4 889999999874 46899999987
No 55
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=92.87 E-value=0.31 Score=39.52 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=68.9
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+.+.+++.|-+.+. +-|+.. ..|.++++..+.
T Consensus 7 l~~~L~~~Gv~~vfgvpG~~~-----~~l~~al~~~~~------------------------------------------ 39 (172)
T PF02776_consen 7 LAEALKANGVTHVFGVPGSGN-----LPLLDALEKSPG------------------------------------------ 39 (172)
T ss_dssp HHHHHHHTT-SEEEEE--GGG-----HHHHHHHHHTTT------------------------------------------
T ss_pred HHHHHHHCCCeEEEEEeChhH-----hHHHHHhhhhcc------------------------------------------
Confidence 35788999987654 777765 567777764320
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
=|++. .-.|++++.+|.|.++.+.++.. +-.+-..+.|++++....+...-..|..|+.++.
T Consensus 40 --i~~i~-~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~ 116 (172)
T PF02776_consen 40 --IRFIP-VRHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQ 116 (172)
T ss_dssp --SEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHH
T ss_pred --eeeec-ccCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHHhhcccceeeEEEEecccchhhhcccccccchhh
Confidence 13333 56799999999999977655544 2223356899999988888866667888878888
Q ss_pred HHHhccCCC
Q psy10436 196 IAMFRTIPA 204 (208)
Q Consensus 196 ia~~r~lPn 204 (208)
.++++.+-.
T Consensus 117 ~~~~~~~~k 125 (172)
T PF02776_consen 117 QSLFRPVTK 125 (172)
T ss_dssp HHHHGGGSS
T ss_pred cchhccccc
Confidence 888887653
No 56
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=92.63 E-value=0.28 Score=40.10 Aligned_cols=45 Identities=20% Similarity=0.123 Sum_probs=36.7
Q ss_pred hHHHHHHhcCCeEEEE-cCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEee
Q psy10436 51 IGLAKLAASNSRVIAL-DGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTF 101 (208)
Q Consensus 51 ~~~~k~~a~G~~vi~V-DGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~ 101 (208)
+.....+++||+++.+ +.+++ +++.++|+++.+. ++|++|++++-
T Consensus 132 d~~~~a~a~G~~~~~v~~~~~l-----~~~~~al~~a~~~-~gp~lI~v~~~ 177 (178)
T cd02008 132 DIEALVRAIGVKRVVVVDPYDL-----KAIREELKEALAV-PGVSVIIAKRP 177 (178)
T ss_pred CHHHHHHHCCCCEEEecCccCH-----HHHHHHHHHHHhC-CCCEEEEEeCC
Confidence 3567889999999987 78887 8888899988754 57999999863
No 57
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=92.15 E-value=0.41 Score=39.43 Aligned_cols=45 Identities=20% Similarity=0.157 Sum_probs=38.5
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKD 105 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G 105 (208)
.....+++|++...+++ +. +++.++|+++. ++|++|.++|.++++
T Consensus 115 ~~~lA~a~G~~~~~v~~-~~-----~el~~al~~a~---~gp~lIev~~~~~~~ 159 (179)
T cd03372 115 LEAVAKACGLDNVATVA-SE-----EAFEKAVEQAL---DGPSFIHVKIKPGNT 159 (179)
T ss_pred HHHHHHHcCCCeEEecC-CH-----HHHHHHHHHhc---CCCEEEEEEEcCCCC
Confidence 45678999999998887 45 89999999997 589999999988876
No 58
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=90.93 E-value=0.86 Score=35.87 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=46.0
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCC
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIP 203 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lP 203 (208)
...|++++.+|.|.++.+.++.. +..+...+.|++++....+.. ...-.+||......+++.+-
T Consensus 40 ~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~~~~~~-~~~~~~~q~~d~~~~~~~~~ 118 (155)
T cd07035 40 VRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTA-GEGRGAFQEIDQVALFRPIT 118 (155)
T ss_pred eCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeCCCccc-cccCCcccccCHHHHHHHHh
Confidence 45899999999999999665543 334455699999998877763 33334577777777777654
No 59
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=90.06 E-value=1.4 Score=36.89 Aligned_cols=46 Identities=24% Similarity=0.207 Sum_probs=36.7
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKD 105 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G 105 (208)
.....++||++...| ++. ++|.+||+++.+ .++|++|.+.|.+...
T Consensus 143 ~~~~A~a~G~~~~~v--~~~-----~el~~al~~a~~-~~gp~lIeV~v~~~~~ 188 (205)
T cd02003 143 FAANARSLGARVEKV--KTI-----EELKAALAKAKA-SDRTTVIVIKTDPKSM 188 (205)
T ss_pred HHHHHHhCCCEEEEE--CCH-----HHHHHHHHHHHh-CCCCEEEEEEeecccc
Confidence 345778899998877 455 899999999875 4689999999987543
No 60
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=87.66 E-value=1.5 Score=39.26 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=37.4
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc---CCCCCEEEEEEeecCCCCCccC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ---VKGKPTALIAKTFKGKDFPNIE 110 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~---~~~kP~vIi~~T~KG~G~~~~e 110 (208)
...+-+++|...+.|||+|+ .++.+++++|.+ ..++|++|.+.|-.=.|-....
T Consensus 178 ~~~~a~~~gip~~~VDG~D~-----~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~D 234 (300)
T PF00676_consen 178 IADRAKGYGIPGIRVDGNDV-----EAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESD 234 (300)
T ss_dssp SGGGGGGTTSEEEEEETTSH-----HHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTS
T ss_pred hhhhhhccCCcEEEECCEeH-----HHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCC
Confidence 34677889999999999998 667666666643 2358999999998887766554
No 61
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=87.30 E-value=1.4 Score=35.44 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=33.1
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEe
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKT 100 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T 100 (208)
.....+++|++...+++ . ++|.++++++.+ .++|++|.+++
T Consensus 138 ~~~~a~a~G~~~~~v~~--~-----~el~~al~~a~~-~~~p~vi~v~v 178 (178)
T cd02002 138 FAAIAKAFGVEAERVET--P-----EELDEALREALA-EGGPALIEVVV 178 (178)
T ss_pred HHHHHHHcCCceEEeCC--H-----HHHHHHHHHHHh-CCCCEEEEEEC
Confidence 34677899999988866 4 889999999876 46899999863
No 62
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=87.19 E-value=1.7 Score=35.03 Aligned_cols=45 Identities=24% Similarity=0.064 Sum_probs=36.3
Q ss_pred hHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecC
Q psy10436 51 IGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKG 103 (208)
Q Consensus 51 ~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG 103 (208)
+.....+++|++.+.+ ++. ++|.++|+++.+ .++|++|.+++.++
T Consensus 113 d~~~lA~a~G~~~~~v--~~~-----~el~~al~~a~~-~~gp~vi~v~i~~~ 157 (157)
T cd02001 113 NLEAWAAACGYLVLSA--PLL-----GGLGSEFAGLLA-TTGPTLLHAPIAPG 157 (157)
T ss_pred CHHHHHHHCCCceEEc--CCH-----HHHHHHHHHHHh-CCCCEEEEEEecCC
Confidence 3557789999998776 455 899999999876 46899999999764
No 63
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=84.96 E-value=2.5 Score=37.52 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=42.3
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc---CCCCCEEEEEEeecCCCCCcc
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ---VKGKPTALIAKTFKGKDFPNI 109 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~---~~~kP~vIi~~T~KG~G~~~~ 109 (208)
..++.+++|..++.|||+|+ +++.++.+.|-+ ..++|++|-+.|-.=.|-...
T Consensus 199 ~~~~a~~~gip~~~VdG~D~-----~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse~ 254 (265)
T cd02016 199 CTDVAKMIGAPIFHVNGDDP-----EAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNEL 254 (265)
T ss_pred HHHHHeecCCCEEEEcCCCH-----HHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCc
Confidence 35788899999999999999 888888876643 235899999999887776443
No 64
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=84.73 E-value=2.6 Score=33.95 Aligned_cols=41 Identities=22% Similarity=0.138 Sum_probs=33.7
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEe
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKT 100 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T 100 (208)
.....+++|++...|+ +. ++|.++|+++... ++|++|.+.+
T Consensus 131 ~~~la~a~G~~~~~v~--~~-----~el~~al~~a~~~-~~p~liev~i 171 (172)
T cd02004 131 YDLVAEAFGGKGELVT--TP-----EELKPALKRALAS-GKPALINVII 171 (172)
T ss_pred HHHHHHHCCCeEEEEC--CH-----HHHHHHHHHHHHc-CCCEEEEEEc
Confidence 3567899999998886 34 8899999998764 6899999875
No 65
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=84.53 E-value=2.7 Score=34.88 Aligned_cols=67 Identities=18% Similarity=0.110 Sum_probs=47.2
Q ss_pred cCCCCCCCCCcchHHH-H--Hhh------------hHHHHHHhcCCeE-EEEcCCCCCCchHHHHHHHHHHhhcCCCCCE
Q psy10436 31 LSSPPSYKKGELVATR-L--AYG------------IGLAKLAASNSRV-IALDGDTKNSTFSDKLKKAFHEASQVKGKPT 94 (208)
Q Consensus 31 ~~~A~~~kLdNLi~i~-D--~~G------------~~~~k~~a~G~~v-i~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~ 94 (208)
+..+.++++.|++.++ + .++ +.....+++|+.. ..|+ +. ++|.++|+++.+. ++|+
T Consensus 85 L~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d~~~~A~a~G~~~~~~v~--~~-----~el~~al~~a~~~-~~p~ 156 (188)
T cd03371 85 LATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVSLPAIAKACGYRAVYEVP--SL-----EELVAALAKALAA-DGPA 156 (188)
T ss_pred HHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCCHHHHHHHcCCceEEecC--CH-----HHHHHHHHHHHhC-CCCE
Confidence 3455677766654443 2 111 3456789999986 4564 55 8899999998754 5899
Q ss_pred EEEEEeecCCC
Q psy10436 95 ALIAKTFKGKD 105 (208)
Q Consensus 95 vIi~~T~KG~G 105 (208)
+|.+.|.++++
T Consensus 157 lIev~~~~~~~ 167 (188)
T cd03371 157 FIEVKVRPGSR 167 (188)
T ss_pred EEEEEecCCCC
Confidence 99999998877
No 66
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=81.75 E-value=5.6 Score=32.42 Aligned_cols=62 Identities=10% Similarity=0.065 Sum_probs=43.4
Q ss_pred cccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 140 IAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 140 IaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
--|++++.+|-|.|+.-.+|-+ +-.+-..+.|++++....... ...-.+||.+++.+++|.+
T Consensus 42 rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~-~~~~~~~q~~d~~~l~~~v 118 (162)
T cd07037 42 VDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTADRPPE-LRGTGANQTIDQVGLFGDY 118 (162)
T ss_pred cChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEECCCCHH-hcCCCCCcccchhhhccce
Confidence 4599999999999977554543 223345689999888776653 2233458888888888765
No 67
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=80.69 E-value=7.6 Score=31.41 Aligned_cols=65 Identities=9% Similarity=-0.005 Sum_probs=43.6
Q ss_pred eccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 138 CFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 138 ~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
..--|++++.+|-|.|+.-.+|.+ +..+-..+.||.++........- .-..+|.++...++|.+
T Consensus 43 ~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g~~~~~~~-~~~~~q~~d~~~~~~~~ 121 (164)
T cd07039 43 QVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDEL-GTDYFQEVDLLALFKDV 121 (164)
T ss_pred EeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCccccc-CCCCCcccCHHHHHHHh
Confidence 345699999999999987544443 22334568999998766555321 12258888888888765
Q ss_pred C
Q psy10436 203 P 203 (208)
Q Consensus 203 P 203 (208)
=
T Consensus 122 t 122 (164)
T cd07039 122 A 122 (164)
T ss_pred h
Confidence 3
No 68
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=80.19 E-value=3.1 Score=32.78 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=33.9
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEE
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIA 98 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~ 98 (208)
...-.+++|.++..|+..+. ++|.++|+++.+ .++|++|.+
T Consensus 113 ~~~~a~a~G~~~~~v~~~~~-----~el~~al~~a~~-~~gp~vIeV 153 (153)
T PF02775_consen 113 FAALAEAFGIKGARVTTPDP-----EELEEALREALE-SGGPAVIEV 153 (153)
T ss_dssp HHHHHHHTTSEEEEESCHSH-----HHHHHHHHHHHH-SSSEEEEEE
T ss_pred HHHHHHHcCCcEEEEccCCH-----HHHHHHHHHHHh-CCCcEEEEc
Confidence 45677999999888987776 899999999984 458999875
No 69
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=78.98 E-value=6.1 Score=38.06 Aligned_cols=100 Identities=14% Similarity=0.039 Sum_probs=66.1
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+++.+++.|-+.+. +-|... ..|.+++.+
T Consensus 22 i~~~L~~~Gv~~vFg~pG~~~-----~~l~~al~~--------------------------------------------- 51 (571)
T PRK07710 22 LIEALEKEGVEVIFGYPGGAV-----LPLYDALYD--------------------------------------------- 51 (571)
T ss_pred HHHHHHHcCCCEEEeCCCcch-----HHHHHHHHh---------------------------------------------
Confidence 45889999998765 667765 667776632
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
.+=+++.+ .-|++++.+|.|.|+...++.. +-.+-..+.||.++........-.. ..+|.++.
T Consensus 52 ~~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~-~~~q~~d~ 129 (571)
T PRK07710 52 CGIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIGS-DAFQEADI 129 (571)
T ss_pred cCCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEeccCCccccCC-CCccccch
Confidence 12356655 7899999999999977444443 2233345899998876555432112 23677788
Q ss_pred HHHhccCC
Q psy10436 196 IAMFRTIP 203 (208)
Q Consensus 196 ia~~r~lP 203 (208)
.++++.+-
T Consensus 130 ~~l~~~~t 137 (571)
T PRK07710 130 MGITMPVT 137 (571)
T ss_pred hhhhhccc
Confidence 88887764
No 70
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=78.22 E-value=3.5 Score=37.97 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=38.5
Q ss_pred ccccccHHHHHHHHHhC-CCcccE-EE-------------e--ccccCCCcEEEEecCCcccc-CCCCCC
Q psy10436 139 FIAEQNLVGVAIGAACR-NRTVPF-IR-------------M--GAISQTNVNFVGSHCGVSIG-EDGPSQ 190 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~-G~~~~~-ir-------------~--~a~~~~~v~~v~~~~G~~~g-~dG~TH 190 (208)
--.|.+.|++|||..+. |+++.+ +. + .-..++|+.++.++-|- .| .|=|-|
T Consensus 32 ~~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~-~g~~depqh 100 (361)
T TIGR03297 32 AANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGE-PGVHDEPQH 100 (361)
T ss_pred cCCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCC-CCCCCCchh
Confidence 34599999999999999 986554 11 1 12358899999999998 45 666777
No 71
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=77.61 E-value=6.3 Score=32.19 Aligned_cols=44 Identities=16% Similarity=0.090 Sum_probs=35.0
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKG 103 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG 103 (208)
.....+++|++.+.|+. . ++|.++++++.+ .++|++|.+.|.+.
T Consensus 133 ~~~~a~a~G~~~~~v~~--~-----~el~~al~~a~~-~~~p~liev~~~~~ 176 (186)
T cd02015 133 FVKLAEAYGIKGLRVEK--P-----EELEAALKEALA-SDGPVLLDVLVDPE 176 (186)
T ss_pred HHHHHHHCCCceEEeCC--H-----HHHHHHHHHHHh-CCCCEEEEEEeCCC
Confidence 34567889999888865 3 789999999876 46899999999653
No 72
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=76.76 E-value=7.2 Score=29.95 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=28.7
Q ss_pred HHHHHHhcCCeEEE--EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEee
Q psy10436 52 GLAKLAASNSRVIA--LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTF 101 (208)
Q Consensus 52 ~~~k~~a~G~~vi~--VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~ 101 (208)
.....++.|..|+. |.+..+. .+-.++|..+-+...||+++||+|=
T Consensus 49 ~~~~a~~~Gl~y~~iPv~~~~~~----~~~v~~f~~~l~~~~~Pvl~hC~sG 96 (110)
T PF04273_consen 49 EAAAAEALGLQYVHIPVDGGAIT----EEDVEAFADALESLPKPVLAHCRSG 96 (110)
T ss_dssp HHHHHHHCT-EEEE----TTT------HHHHHHHHHHHHTTTTSEEEE-SCS
T ss_pred HHHHHHHcCCeEEEeecCCCCCC----HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 34678999999987 6766662 4555556655555568999999983
No 73
>PRK11269 glyoxylate carboligase; Provisional
Probab=76.66 E-value=8.1 Score=37.43 Aligned_cols=100 Identities=8% Similarity=0.031 Sum_probs=65.7
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+...+++.|-+++. +-|+.. ..|.+++.....
T Consensus 10 l~~~L~~~Gv~~vFg~pG~~~-----~~l~dal~~~~~------------------------------------------ 42 (591)
T PRK11269 10 AVLVLEKEGVTTAFGVPGAAI-----NPFYSAMRKHGG------------------------------------------ 42 (591)
T ss_pred HHHHHHHcCCCEEEeCCCccc-----HHHHHHHhhcCC------------------------------------------
Confidence 45889999998776 677765 667776642100
Q ss_pred CCCcceeeccccccHHHHHHHHHhCC-CcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChh
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRN-RTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALE 194 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G-~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ie 194 (208)
=||+.+ --|++++.+|-|.|+.. .++-. +..+-..+.||.++........-.. ..+|.++
T Consensus 43 --i~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~-~~~q~~d 118 (591)
T PRK11269 43 --IRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHK-EDFQAVD 118 (591)
T ss_pred --CcEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC-CcccccC
Confidence 134443 46999999999999775 43442 2233356899998877665532222 3478888
Q ss_pred HHHHhccC
Q psy10436 195 DIAMFRTI 202 (208)
Q Consensus 195 Dia~~r~l 202 (208)
..+++|.+
T Consensus 119 ~~~l~~~i 126 (591)
T PRK11269 119 IESIAKPV 126 (591)
T ss_pred hhhHhhcc
Confidence 88888864
No 74
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=75.95 E-value=7.9 Score=35.90 Aligned_cols=53 Identities=25% Similarity=0.238 Sum_probs=41.3
Q ss_pred HHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcC---CCCCEEEEEEeecCCCCCccCC
Q psy10436 54 AKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQV---KGKPTALIAKTFKGKDFPNIED 111 (208)
Q Consensus 54 ~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~---~~kP~vIi~~T~KG~G~~~~e~ 111 (208)
.|-.++|.--+.|||+|+ -++.++.++|.+. .+.|++|-+.|-.=.|-+...+
T Consensus 216 ~ra~aygipgv~VDG~D~-----~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd 271 (358)
T COG1071 216 ARAAAYGIPGVRVDGNDV-----LAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDD 271 (358)
T ss_pred hhhhccCCCeEEECCcCH-----HHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCC
Confidence 488888999899999998 6677777666532 3479999999988888766644
No 75
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=74.62 E-value=9.2 Score=31.01 Aligned_cols=43 Identities=21% Similarity=0.134 Sum_probs=33.9
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeec
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFK 102 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~K 102 (208)
.....+++|++...++ +. +++.++++++.+. ++|++|.+.|..
T Consensus 132 ~~~la~a~G~~~~~v~--~~-----~el~~~l~~a~~~-~~p~liev~~~~ 174 (178)
T cd02014 132 FAKIAEAMGIKGIRVE--DP-----DELEAALDEALAA-DGPVVIDVVTDP 174 (178)
T ss_pred HHHHHHHCCCeEEEeC--CH-----HHHHHHHHHHHhC-CCCEEEEEEeCC
Confidence 4567889999988775 34 7899999988764 589999999853
No 76
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=74.41 E-value=7.3 Score=37.55 Aligned_cols=64 Identities=13% Similarity=0.076 Sum_probs=44.3
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCC
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIP 203 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lP 203 (208)
.--|++++.+|.|.|+...++.. +..+-..+.||+++........-..| .||.++...++|.+-
T Consensus 48 ~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-~~q~~d~~~l~~~it 126 (574)
T PRK06466 48 VRHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTLIGED-AFQETDMVGISRPIV 126 (574)
T ss_pred eCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccCCC-cccccchhhhhhccc
Confidence 35699999999999976544443 33334568999999876665433233 488888888887654
No 77
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=74.05 E-value=1.2 Score=36.44 Aligned_cols=46 Identities=22% Similarity=0.300 Sum_probs=35.6
Q ss_pred ccccHHHHHHHHHhCCCcccE-EEecc-------------ccCCCcEEEEecCCccccCCC
Q psy10436 141 AEQNLVGVAIGAACRNRTVPF-IRMGA-------------ISQTNVNFVGSHCGVSIGEDG 187 (208)
Q Consensus 141 aE~~mv~~AaGlA~~G~~~~~-ir~~a-------------~~~~~v~~v~~~~G~~~g~dG 187 (208)
+|..-+|++||..+.|+++.+ +...+ ..++|..++.+|-|. .+++=
T Consensus 50 REEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~-~~E~i 109 (172)
T COG4032 50 REEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGV-LKEGI 109 (172)
T ss_pred chhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccch-hhcCC
Confidence 699999999999999997665 22211 348999999999998 56543
No 78
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=72.84 E-value=12 Score=36.27 Aligned_cols=100 Identities=16% Similarity=0.096 Sum_probs=65.7
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+...+++.|-+++. +-|... ..|.++|.+.. +
T Consensus 27 l~~~L~~~GV~~vFgvpG~~~-----~~l~dal~~~~----~-------------------------------------- 59 (587)
T PRK06965 27 LMKALAAEGVEFIWGYPGGAV-----LYIYDELYKQD----K-------------------------------------- 59 (587)
T ss_pred HHHHHHHcCCCEEEecCCcch-----HHHHHHHhhcC----C--------------------------------------
Confidence 45889999999775 677765 66777664211 0
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
=|++.+ --|++++.+|-|.|+...++-. +..+-..+.||+++........-..+ ++|.++.
T Consensus 60 --i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-~~q~~d~ 135 (587)
T PRK06965 60 --IQHVLV-RHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQD-AFQECDT 135 (587)
T ss_pred --CeEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCCC-CcccccH
Confidence 133333 5699999999999977544443 33444568999999877665432222 4777777
Q ss_pred HHHhccC
Q psy10436 196 IAMFRTI 202 (208)
Q Consensus 196 ia~~r~l 202 (208)
.+++|.+
T Consensus 136 ~~l~~~i 142 (587)
T PRK06965 136 VGITRPI 142 (587)
T ss_pred HHHhcCC
Confidence 7777665
No 79
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=71.83 E-value=14 Score=35.48 Aligned_cols=63 Identities=10% Similarity=-0.000 Sum_probs=42.9
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
---|++++.+|.|.|+...++.. +..+-..+.||+++........-..| .+|.++..+++|.+
T Consensus 52 ~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q~~d~~~l~~~~ 129 (557)
T PRK08199 52 CRQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFRERE-AFQEIDYRRMFGPM 129 (557)
T ss_pred eccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEecCCccccCCCC-cccccCHHHhhhhh
Confidence 34599999999999987655543 33334568999988766554332233 36778888888765
No 80
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=71.12 E-value=11 Score=36.18 Aligned_cols=100 Identities=15% Similarity=0.088 Sum_probs=65.1
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+.+.+++.|-+++. +-|+.. ..|.++|.+..
T Consensus 19 l~~~L~~~GV~~vFgvpG~~~-----~~l~dal~~~~------------------------------------------- 50 (564)
T PRK08155 19 IVRLLERQGIRIVTGIPGGAI-----LPLYDALSQST------------------------------------------- 50 (564)
T ss_pred HHHHHHHcCCCEEEeCCCccc-----HHHHHHHhccC-------------------------------------------
Confidence 45889999999776 677765 56777664210
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
.=||+. ..-|++++.+|.|.|+...++.. +..+-+.+.||+++........- .-..+|.++.
T Consensus 51 -~i~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~-~~~~~q~~d~ 127 (564)
T PRK08155 51 -QIRHIL-ARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMI-GTDAFQEVDT 127 (564)
T ss_pred -CceEEE-eccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeccCCcccc-cCCCccccch
Confidence 013444 56799999999999988554543 33334568999988766555322 2234677776
Q ss_pred HHHhccC
Q psy10436 196 IAMFRTI 202 (208)
Q Consensus 196 ia~~r~l 202 (208)
.+++|.+
T Consensus 128 ~~~~~~~ 134 (564)
T PRK08155 128 YGISIPI 134 (564)
T ss_pred hhhhhcc
Confidence 6776654
No 81
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=70.98 E-value=27 Score=27.39 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=41.7
Q ss_pred CcceeeccccccHHHHHHHHHhCCCcccE--------------EEeccccCCCcEEEEecCCccccCC--CCCCCChhHH
Q psy10436 133 DRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRMGAISQTNVNFVGSHCGVSIGED--GPSQMALEDI 196 (208)
Q Consensus 133 ~r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir~~a~~~~~v~~v~~~~G~~~g~d--G~TH~~ieDi 196 (208)
-+++.+- -|+..+.+|.|.++.|.+ ++ +..+...+.|+.++....+.. +.. ...||.++..
T Consensus 42 i~~i~~~-~E~~A~~~A~g~~r~~~~-v~~~~~gpG~~n~~~~l~~a~~~~~P~v~i~g~~~~~-~~~~~~~~~~~~~~~ 118 (160)
T cd07034 42 GVVVQAE-SEHAAAEAAIGASAAGAR-AMTATSGPGLNLMAEALYLAAGAELPLVIVVAQRPGP-STGLPKPDQSDLMAA 118 (160)
T ss_pred cEEEEeC-CHHHHHHHHHHHHhhCCc-EEEeeCcchHHHHHHHHHHHHhCCCCEEEEEeeCCCC-CCCCCCcCcHHHHHH
Confidence 3666666 899999999999999886 43 222334579999887776662 222 2234445544
Q ss_pred HHhc
Q psy10436 197 AMFR 200 (208)
Q Consensus 197 a~~r 200 (208)
.+++
T Consensus 119 ~~~~ 122 (160)
T cd07034 119 RYGG 122 (160)
T ss_pred HhCC
Confidence 4443
No 82
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=69.80 E-value=14 Score=35.15 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=43.1
Q ss_pred cccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCC
Q psy10436 140 IAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIP 203 (208)
Q Consensus 140 IaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lP 203 (208)
--|++++.+|-|.|+.-.++-. +..+...+.||.++........ ..-..||.+++.+++|.+-
T Consensus 43 ~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl~~A~~~~~Pvl~I~G~~~~~~-~~~~~~q~~d~~~~~~~~t 120 (539)
T TIGR02418 43 RHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRAD-LLKLTHQSMDNVALFRPIT 120 (539)
T ss_pred CcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHHHHHhhcCCCEEEEeCCCcccc-cccCcccccchhhhhhcce
Confidence 3699999999999966443433 3333456899998876555432 1223599999998888753
No 83
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=69.08 E-value=10 Score=30.70 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=32.4
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEe
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKT 100 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T 100 (208)
...-.+++|++...|+ +. ++|.++|+++.+ .++|++|.+.+
T Consensus 134 ~~~lA~a~G~~~~~v~--~~-----~el~~al~~a~~-~~~p~lIev~v 174 (175)
T cd02009 134 FEHLAKAYGLEYRRVS--SL-----DELEQALESALA-QDGPHVIEVKT 174 (175)
T ss_pred HHHHHHHcCCCeeeCC--CH-----HHHHHHHHHHHh-CCCCEEEEEeC
Confidence 4566788999987764 44 889999999976 46899998865
No 84
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=68.20 E-value=12 Score=34.43 Aligned_cols=47 Identities=21% Similarity=0.128 Sum_probs=36.7
Q ss_pred HHHHHHhcCCe-EEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCC
Q psy10436 52 GLAKLAASNSR-VIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 52 ~~~k~~a~G~~-vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~ 106 (208)
.....+++||. .+. .++. ++|.++|+++.+. ++|++|.+++.+|.+-
T Consensus 294 ~~~iA~a~G~~~~~~--v~~~-----~eL~~al~~a~~~-~gp~lIeV~v~~g~~~ 341 (361)
T TIGR03297 294 FAQIAKACGYAKVYE--VSTL-----EELETALTAASSA-NGPRLIEVKVRPGSRA 341 (361)
T ss_pred HHHHHHHCCCceEEE--eCCH-----HHHHHHHHHHHhC-CCcEEEEEEecCCCcc
Confidence 45778899984 443 4666 8999999999754 5799999999998753
No 85
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=67.93 E-value=10 Score=31.03 Aligned_cols=44 Identities=14% Similarity=0.015 Sum_probs=33.2
Q ss_pred HHHHHHhcC----CeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeec
Q psy10436 52 GLAKLAASN----SRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFK 102 (208)
Q Consensus 52 ~~~k~~a~G----~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~K 102 (208)
.....+++| +++..+ ++. +++.+||+++.+..++|++|.+.|-+
T Consensus 128 ~~~ia~a~G~~~~~~~~~v--~~~-----~el~~al~~a~~~~~~p~liev~~~~ 175 (183)
T cd02005 128 YTKLPEVFGGGGGGLSFRV--KTE-----GELDEALKDALFNRDKLSLIEVILPK 175 (183)
T ss_pred HHHHHHHhCCCccccEEEe--cCH-----HHHHHHHHHHHhcCCCcEEEEEEcCc
Confidence 345678888 466555 555 89999999988634689999999854
No 86
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=67.80 E-value=17 Score=35.10 Aligned_cols=62 Identities=8% Similarity=0.005 Sum_probs=43.0
Q ss_pred cccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 140 IAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 140 IaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
--|++++.+|-|.|+...++-. +..+-..+.||.++....... ...-.++|.++..+++|.+
T Consensus 45 rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~G~~~~~-~~~~~~~q~id~~~~~~~v 121 (575)
T TIGR02720 45 RHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPTT-GMNMDTFQEMNENPIYADV 121 (575)
T ss_pred ccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCccc-cCCCCCcceechhhhhhhc
Confidence 4599999999999976544443 223334589999988776663 3344568888777877764
No 87
>PLN02470 acetolactate synthase
Probab=67.00 E-value=14 Score=35.75 Aligned_cols=100 Identities=14% Similarity=0.098 Sum_probs=63.7
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+...+++.|-+.+. +-|+.. ..|.++|.... +
T Consensus 19 l~~~L~~~GV~~vFg~pG~~~-----~~l~dal~~~~----~-------------------------------------- 51 (585)
T PLN02470 19 LVEALEREGVDTVFAYPGGAS-----MEIHQALTRSN----C-------------------------------------- 51 (585)
T ss_pred HHHHHHHcCCCEEEEcCCccc-----HHHHHHHhccC----C--------------------------------------
Confidence 45889999998765 677765 66776663100 0
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
=||+.+ --|++++.+|.|.|+.-.++-. +..+-..+.||+++........-.. ..+|.++.
T Consensus 52 --i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G~~~~~~~~~-~~~q~~d~ 127 (585)
T PLN02470 52 --IRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQVPRRMIGT-DAFQETPI 127 (585)
T ss_pred --ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEecCCChhhcCC-CcCcccch
Confidence 134444 4599999999999976443443 3333456899998876655432122 23677777
Q ss_pred HHHhccC
Q psy10436 196 IAMFRTI 202 (208)
Q Consensus 196 ia~~r~l 202 (208)
.+++|.+
T Consensus 128 ~~l~~~~ 134 (585)
T PLN02470 128 VEVTRSI 134 (585)
T ss_pred hhhhhhh
Confidence 7777654
No 88
>PRK07064 hypothetical protein; Provisional
Probab=66.90 E-value=17 Score=34.54 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=42.8
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCcc-ccCC-CCCCCChhHHHHhcc
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVS-IGED-GPSQMALEDIAMFRT 201 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~-~g~d-G~TH~~ieDia~~r~ 201 (208)
..-|++++.+|.|.|+...++.+ +..+-..+.||.++....... .+.+ +..||.+++..++|.
T Consensus 47 ~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~ 126 (544)
T PRK07064 47 ARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRA 126 (544)
T ss_pred eccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhh
Confidence 35599999999999977544443 333345689999887654432 1222 245777788888876
Q ss_pred CC
Q psy10436 202 IP 203 (208)
Q Consensus 202 lP 203 (208)
+-
T Consensus 127 ~t 128 (544)
T PRK07064 127 VS 128 (544)
T ss_pred hc
Confidence 53
No 89
>PRK08322 acetolactate synthase; Reviewed
Probab=66.66 E-value=19 Score=34.29 Aligned_cols=65 Identities=11% Similarity=0.056 Sum_probs=43.2
Q ss_pred eccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 138 CFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 138 ~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
...-|++++.+|-|.|+.-.+|.. +-.+-..+.||+++........-..+ .||.++..+++|.+
T Consensus 43 ~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~g~~~~~~~~~~-~~q~~d~~~~~~~~ 121 (547)
T PRK08322 43 LTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRSKQG-SFQIVDVVAMMAPL 121 (547)
T ss_pred EeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEeccccccccCCC-ccccccHHHHhhhh
Confidence 345699999999999987554543 22334568999888765554322222 47777777888765
Q ss_pred C
Q psy10436 203 P 203 (208)
Q Consensus 203 P 203 (208)
-
T Consensus 122 t 122 (547)
T PRK08322 122 T 122 (547)
T ss_pred e
Confidence 3
No 90
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=66.32 E-value=22 Score=34.41 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=41.8
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
.--|++++.+|.|.|+...++.+ +..+-..+.||.++........- .-.++|.+++..++|.+
T Consensus 49 ~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~-~~~~~q~~d~~~l~~~~ 126 (588)
T PRK07525 49 VAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTI-GQGGFQEAEQMPMFEDM 126 (588)
T ss_pred ecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEeCCCCcccC-CCCCCcccchhhhhhhh
Confidence 35699999999999977433443 22333568999998755544211 22357878888888765
No 91
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=65.45 E-value=19 Score=34.52 Aligned_cols=63 Identities=13% Similarity=0.223 Sum_probs=43.0
Q ss_pred cccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCC
Q psy10436 140 IAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIP 203 (208)
Q Consensus 140 IaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lP 203 (208)
.-|++++-+|-|.|+...++.. +..+-..+.||.++........-..| .||.++..+++|.+-
T Consensus 54 ~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l~~i~~A~~~~~Pvl~IsG~~~~~~~~~~-~~q~~d~~~~~~~~t 131 (568)
T PRK07449 54 FDERSAGFLALGLAKASKRPVAVIVTSGTAVANLYPAVIEAGLTGVPLIVLTADRPPELRDCG-ANQAIDQLGLFGSYP 131 (568)
T ss_pred cCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhhHHHHHHhhcCCcEEEEECCCCHHHhcCC-CCceecHhhHhhhhh
Confidence 4599999999999976544442 33344568999998777665332233 377888888887653
No 92
>PRK08611 pyruvate oxidase; Provisional
Probab=65.45 E-value=23 Score=34.23 Aligned_cols=64 Identities=9% Similarity=-0.014 Sum_probs=43.7
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCC
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIP 203 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lP 203 (208)
.--|++++-+|.|.|+.-.++-. +..+-..+.||.++........-..| .+|.++...++|.+-
T Consensus 49 ~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~-~~q~~d~~~l~~~it 127 (576)
T PRK08611 49 VRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLGTD-FFQEVNLEKMFEDVA 127 (576)
T ss_pred eCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCcccccCCC-CccccCHHHHhhccc
Confidence 45699999999999966444443 22334558999998877666433233 477777788888653
No 93
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=64.65 E-value=22 Score=34.55 Aligned_cols=62 Identities=6% Similarity=0.004 Sum_probs=42.3
Q ss_pred cccccHHHHHHHHHhCC-CcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 140 IAEQNLVGVAIGAACRN-RTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 140 IaE~~mv~~AaGlA~~G-~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
--|++++.+|-|.|+.. .++-+ +..+-..+.||+++........... .++|.++..+++|.+
T Consensus 48 rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~~-~~~q~~D~~~~~~~v 125 (588)
T TIGR01504 48 RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHK-EDFQAVDIAAIAKPV 125 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCC-CcccccCHHHHhhhh
Confidence 34999999999999864 43433 2233356899999987776643222 347877777887765
No 94
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=64.40 E-value=19 Score=34.96 Aligned_cols=100 Identities=10% Similarity=0.026 Sum_probs=63.6
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+...|++.|-+++. +-|... ..|.++|.... +
T Consensus 17 l~~~L~~~GV~~vFGvpG~~~-----~~l~dal~~~~----~-------------------------------------- 49 (595)
T PRK09107 17 VVQALKDQGVEHIFGYPGGAV-----LPIYDEIFQQD----D-------------------------------------- 49 (595)
T ss_pred HHHHHHHCCCCEEEEccCcch-----HHHHHHHhhcC----C--------------------------------------
Confidence 45889999999765 677765 56777664211 0
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
=||+.+ --|++++.+|-|.|+.-.++.. +..+-..+.||.++........-.. .++|.++.
T Consensus 50 --i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~i~G~~~~~~~~~-~~~q~~d~ 125 (595)
T PRK09107 50 --IQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLIGS-DAFQECDT 125 (595)
T ss_pred --CeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEEcCCChhhcCC-CCCcccch
Confidence 133333 5699999999999965333433 2233355899998877665532112 35777776
Q ss_pred HHHhccC
Q psy10436 196 IAMFRTI 202 (208)
Q Consensus 196 ia~~r~l 202 (208)
.+++|.+
T Consensus 126 ~~l~~~v 132 (595)
T PRK09107 126 VGITRPC 132 (595)
T ss_pred hhhhhhh
Confidence 7777653
No 95
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=64.19 E-value=21 Score=34.44 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=41.1
Q ss_pred cccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 140 IAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 140 IaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
--|++++.+|.|.|+.-.++.+ +..+-..+.||.++........-..| .+|.++..+++|.+
T Consensus 49 rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~-~~q~~d~~~~~~~i 125 (572)
T PRK08979 49 RHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGND-AFQECDMIGISRPV 125 (572)
T ss_pred CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHHHHHhhcCCCEEEEecCCCccccCCC-CCcccchhHHhhhc
Confidence 5699999999999976333443 22333458999988776655322222 47777777777764
No 96
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=63.64 E-value=20 Score=34.11 Aligned_cols=101 Identities=18% Similarity=0.147 Sum_probs=65.9
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+.+.+++.|-+++. +-|+.. ..|.+++.. .
T Consensus 18 l~~~L~~~GV~~vFgiPG~~~-----~~l~dal~~--~------------------------------------------ 48 (530)
T PRK07092 18 TIDLLRRFGITTVFGNPGSTE-----LPFLRDFPD--D------------------------------------------ 48 (530)
T ss_pred HHHHHHHcCCCEEEeCCCCcc-----hHHHHHHhh--c------------------------------------------
Confidence 45889999998776 667765 567666521 0
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
=||+ ..--|++++.+|-|.|+...++.. +..+...+.||.++........-..+..+|.++.
T Consensus 49 --i~~i-~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~ 125 (530)
T PRK07092 49 --FRYV-LGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQQARSILPFEPFLAAVQA 125 (530)
T ss_pred --CCEE-EEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHHHHHhhcCCCEEEEecCCcccccCccchhcccCH
Confidence 1333 445699999999999986544443 2233456899998877666644334444455666
Q ss_pred HHHhccCCC
Q psy10436 196 IAMFRTIPA 204 (208)
Q Consensus 196 ia~~r~lPn 204 (208)
.+++|.+-.
T Consensus 126 ~~l~~~~tk 134 (530)
T PRK07092 126 AELPKPYVK 134 (530)
T ss_pred HHhhccccc
Confidence 778876543
No 97
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=63.28 E-value=20 Score=34.52 Aligned_cols=100 Identities=15% Similarity=-0.012 Sum_probs=62.8
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+...+++.|-+.+. +-|+.. ..|.++|.....
T Consensus 16 i~~~L~~~Gv~~vFgipG~~~-----~~l~dal~~~~~------------------------------------------ 48 (566)
T PRK07282 16 VLETLRDLGVDTIFGYPGGAV-----LPLYDAIYNFEG------------------------------------------ 48 (566)
T ss_pred HHHHHHHcCCCEEEecCCcch-----HHHHHHHhhcCC------------------------------------------
Confidence 45889999998765 677765 567776632100
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
=||+ .---|++++.+|.|.|+...++.. +..+-..+.||+++........- .-..+|.++.
T Consensus 49 --i~~i-~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~-~~~~~q~~d~ 124 (566)
T PRK07282 49 --IRHI-LARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGI-GKDAFQEADI 124 (566)
T ss_pred --ceEE-EecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecccccccC-CCCCccccCh
Confidence 1222 224599999999999977433443 22333458999999876554321 1224777777
Q ss_pred HHHhccC
Q psy10436 196 IAMFRTI 202 (208)
Q Consensus 196 ia~~r~l 202 (208)
.+++|.+
T Consensus 125 ~~~~~~i 131 (566)
T PRK07282 125 VGITMPI 131 (566)
T ss_pred hchhcCC
Confidence 7777654
No 98
>PRK05858 hypothetical protein; Provisional
Probab=62.50 E-value=25 Score=33.70 Aligned_cols=64 Identities=13% Similarity=0.044 Sum_probs=43.8
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCC
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIP 203 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lP 203 (208)
.--|++++.+|-|.|+...++-. +..+-..+.||+++........- .-.++|.++..+++|.+-
T Consensus 48 ~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~g~~~~~~~-~~~~~q~~d~~~l~~~~t 126 (542)
T PRK05858 48 VRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALRW-GMGSLQEIDHVPFVAPVT 126 (542)
T ss_pred eccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHHHHHHhcCCCEEEEeCCCCcccC-CCCCCcccchhhhhhhhh
Confidence 34699999999999988544443 33344568999988866655321 223578787777777653
No 99
>PRK08617 acetolactate synthase; Reviewed
Probab=62.35 E-value=23 Score=33.85 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=64.7
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+.+.+++.|-+++. +-|+.. ..|.+++.. ..
T Consensus 11 l~~~L~~~GV~~vFg~pG~~~-----~~l~~al~~-~~------------------------------------------ 42 (552)
T PRK08617 11 VVDSLINQGVKYVFGIPGAKI-----DRVFDALED-SG------------------------------------------ 42 (552)
T ss_pred HHHHHHHcCCCEEEeCCCccH-----HHHHHHHhh-CC------------------------------------------
Confidence 45789999998776 677765 667776642 00
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
=||+ .---|++++.+|.|.|+...++.. +..+...+.||.++........-.- .+||.++.
T Consensus 43 --i~~i-~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l~gl~~A~~~~~PvlvisG~~~~~~~~~-~~~q~~d~ 118 (552)
T PRK08617 43 --PELI-VTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADRLK-RTHQSMDN 118 (552)
T ss_pred --CCEE-EeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEecCCcccccCC-CCccccch
Confidence 1222 234699999999999987554443 2233456899998876544432112 35888888
Q ss_pred HHHhccCC
Q psy10436 196 IAMFRTIP 203 (208)
Q Consensus 196 ia~~r~lP 203 (208)
.+++|.+-
T Consensus 119 ~~l~~~~t 126 (552)
T PRK08617 119 VALFRPIT 126 (552)
T ss_pred hhhhhhhc
Confidence 88887653
No 100
>PRK06163 hypothetical protein; Provisional
Probab=62.05 E-value=29 Score=29.23 Aligned_cols=51 Identities=8% Similarity=-0.022 Sum_probs=37.9
Q ss_pred HHHHHHhcCCe-EEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccC
Q psy10436 52 GLAKLAASNSR-VIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIE 110 (208)
Q Consensus 52 ~~~k~~a~G~~-vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e 110 (208)
.....+++|.+ .+.+. +. ++|.++|+++.+. ++|++|.+.|.....++..+
T Consensus 131 f~~lA~a~G~~~~~~v~--~~-----~el~~al~~a~~~-~~p~lIeV~i~~~~~~~~~~ 182 (202)
T PRK06163 131 VVAIARGAGLENSHWAA--DE-----AHFEALVDQALSG-PGPSFIAVRIDDKPGVGTTE 182 (202)
T ss_pred HHHHHHHCCCceEEEeC--CH-----HHHHHHHHHHHhC-CCCEEEEEEecCCCCCCCCC
Confidence 45667889997 44553 44 7889999988754 68999999998776666555
No 101
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=61.84 E-value=30 Score=33.31 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=41.8
Q ss_pred cccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 140 IAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 140 IaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
--|++++.+|-|.|+...++.. +..+-..+.||+++........- .-.++|.++..+++|.+
T Consensus 49 ~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~G~~~~~~~-~~~~~q~~d~~~l~~~v 125 (574)
T PRK06882 49 RHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSNLI-GTDAFQECDMLGISRPV 125 (574)
T ss_pred ccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCcccc-CCCcccccchhhhhhcc
Confidence 5699999999999977443443 33344568999988766555321 12247777777777764
No 102
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=61.57 E-value=28 Score=32.34 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=41.3
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
..-|++++-+|-|.|+.-.+|-+ +-.+-+.+.||+++........-..| .+|.+++.+++|.+
T Consensus 44 ~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q~~d~~~~~~~~ 121 (432)
T TIGR00173 44 HIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAVIEASYSGVPLIVLTADRPPELRGCG-ANQTIDQPGLFGSY 121 (432)
T ss_pred ecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHHHHhcccCCcEEEEeCCCCHHHhCCC-CCcccchhhHHhhc
Confidence 45599999999999988443443 22334568999888766554322222 46777777777754
No 103
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=61.00 E-value=30 Score=33.32 Aligned_cols=62 Identities=16% Similarity=0.110 Sum_probs=41.4
Q ss_pred cccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 140 IAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 140 IaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
--|++++.+|.|.|+.-.++.+ +..+-..+.||.++........-.. ..+|.++..+++|.+
T Consensus 49 rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~-~~~q~~d~~~l~~~~ 125 (574)
T PRK07979 49 RHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGY-DAFQECDMVGISRPV 125 (574)
T ss_pred CcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHHHHHhhcCCCEEEEECCCChhccCC-CCCceecHHHHhhcc
Confidence 4599999999999976333443 3333456899998877666532222 247777777777764
No 104
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=60.20 E-value=30 Score=33.70 Aligned_cols=103 Identities=13% Similarity=-0.009 Sum_probs=65.9
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
++..|++.|-+++. +-|... ..|.++|......
T Consensus 25 l~~~L~~~GV~~vFgipG~~~-----~~l~dal~~~~~~----------------------------------------- 58 (616)
T PRK07418 25 LMDSLKRHGVKHIFGYPGGAI-----LPIYDELYKAEAE----------------------------------------- 58 (616)
T ss_pred HHHHHHHcCCCEEEeCcCcch-----HHHHHHHHhcccC-----------------------------------------
Confidence 45889999999876 667765 6677766532110
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
..=||+.+ --|++++.+|.|.|+...++.. +..+-+.+.||.++........- .-..+|.++.
T Consensus 59 ~~i~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~-~~~~~Qe~d~ 136 (616)
T PRK07418 59 GWLKHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAI-GTDAFQETDI 136 (616)
T ss_pred CCceEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCcccc-CCCCcccccH
Confidence 01245555 5699999999999977444443 33445568999988776655321 1223666666
Q ss_pred HHHhccC
Q psy10436 196 IAMFRTI 202 (208)
Q Consensus 196 ia~~r~l 202 (208)
.+++|.+
T Consensus 137 ~~~~~~v 143 (616)
T PRK07418 137 FGITLPI 143 (616)
T ss_pred HHHhhhc
Confidence 6676654
No 105
>PRK08266 hypothetical protein; Provisional
Probab=60.09 E-value=24 Score=33.66 Aligned_cols=103 Identities=19% Similarity=0.127 Sum_probs=64.1
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+.+.+++.|-+.+. +-|+.. ..|.+++.+.+ ++
T Consensus 10 l~~~L~~~Gv~~vFg~pG~~~-----~~l~~al~~~~---~~-------------------------------------- 43 (542)
T PRK08266 10 IVAGLVAHGVDTVFGLPGAQL-----YWLFDALYKAG---DR-------------------------------------- 43 (542)
T ss_pred HHHHHHHcCCCEEEECCCcch-----HHHHHHHHhcC---CC--------------------------------------
Confidence 45788999998776 667765 66777764311 00
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccc-cCC-CCCCCCh
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSI-GED-GPSQMAL 193 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~-g~d-G~TH~~i 193 (208)
=|++ .-.-|++++.+|-|.|+...++.. +..+-+.+.||.++........ +.+ +.+|+.+
T Consensus 44 --i~~v-~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~ 120 (542)
T PRK08266 44 --IRVI-HTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMP 120 (542)
T ss_pred --CeEE-eeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecc
Confidence 1222 234599999999999977544443 3334456899998876544322 222 2356656
Q ss_pred hHHHHhccCC
Q psy10436 194 EDIAMFRTIP 203 (208)
Q Consensus 194 eDia~~r~lP 203 (208)
....++|.+-
T Consensus 121 d~~~~~~~~t 130 (542)
T PRK08266 121 DQLATLRSFT 130 (542)
T ss_pred cHhhHHhhhc
Confidence 7777887653
No 106
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=59.98 E-value=30 Score=33.44 Aligned_cols=62 Identities=19% Similarity=0.169 Sum_probs=41.1
Q ss_pred cccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 140 IAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 140 IaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
--|++++.+|.|.|+...++.. +..+-..+.||.++....+... ....+||.++..+++|.+
T Consensus 46 rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~g~~~~~~-~~~~~~Q~~d~~~l~~~v 122 (579)
T TIGR03457 46 VHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTKT-IGLGGFQEADQLPMFQEF 122 (579)
T ss_pred ccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHHHhhcCCCEEEEeCCCcccc-CCCCCCcccchhhhhhcc
Confidence 3599999999999966433443 3333456899999976555422 122358888777887764
No 107
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=59.42 E-value=30 Score=28.61 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=36.0
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc--CCCCCEEEEEEeecCCCCC
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ--VKGKPTALIAKTFKGKDFP 107 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~--~~~kP~vIi~~T~KG~G~~ 107 (208)
...-++||.+...|+. . ++|.++|+++.. ..++|++|.+.+.+..+.+
T Consensus 136 ~~lA~a~G~~~~~v~~--~-----~el~~al~~a~~~~~~~~p~liev~v~~~~~~~ 185 (196)
T cd02013 136 AKIAEACGAKGITVDK--P-----EDVGPALQKAIAMMAEGKTTVIEIVCDQELGDP 185 (196)
T ss_pred HHHHHHCCCEEEEECC--H-----HHHHHHHHHHHhcCCCCCeEEEEEEeCcccCCc
Confidence 4566889998887753 4 788889988865 1468999999997665543
No 108
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=59.36 E-value=28 Score=33.49 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=40.7
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
.--|++++.+|.|.|+.-.++.+ +..+-..+.||.++........-..+ .+|.++..+++|.+
T Consensus 49 ~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~-~~q~~d~~~i~~~~ 126 (572)
T PRK06456 49 MRHEQAAAHAADGYARASGVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMGKM-AFQEADAMGVFENV 126 (572)
T ss_pred eCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEecCCCccccCCC-Cccccchhhhhhcc
Confidence 34599999999999977443443 33334568999988766655322222 36667667777654
No 109
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=59.28 E-value=26 Score=33.72 Aligned_cols=61 Identities=13% Similarity=-0.057 Sum_probs=40.4
Q ss_pred ccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 141 AEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 141 aE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
-|++++-+|-|.|+...++.+ +..+-..+.||.++........-.. ..||.+.+..++|.+
T Consensus 49 hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~-~~~Q~~d~~~l~~~i 124 (574)
T PRK09124 49 HEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGS-GYFQETHPQELFREC 124 (574)
T ss_pred cHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHHHHHhhcCCCEEEEecCCccccCCC-CCccccChhhhcccc
Confidence 599999999999988544443 2222345899988876544422112 248888888888754
No 110
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=58.88 E-value=29 Score=28.51 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=33.5
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCC
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGK 104 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~ 104 (208)
.....+++|+.... + ++. ++|.++|+ +.+ .++|++|.+.+.++.
T Consensus 115 ~~~lA~a~G~~~~~~v--~~~-----~~l~~al~-a~~-~~~p~li~v~~~~~~ 159 (181)
T TIGR03846 115 LELVAKAAGIRNVEKV--ADE-----EELRDALK-ALA-MKGPTFIHVKVKPGN 159 (181)
T ss_pred HHHHHHHCCCCeEEEe--CCH-----HHHHHHHH-HHc-CCCCEEEEEEeCCCC
Confidence 45667999999876 4 445 88999997 544 468999999997664
No 111
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=58.50 E-value=16 Score=34.42 Aligned_cols=56 Identities=21% Similarity=0.261 Sum_probs=40.6
Q ss_pred CcchHHHHHhhh----HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCC
Q psy10436 40 GELVATRLAYGI----GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 40 dNLi~i~D~~G~----~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~ 106 (208)
||++.....+|- ...-|..+||+|..||.+|. +.+.++++. +-.+|++.|+-..+.
T Consensus 102 D~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d~-----~~~~~aI~~------nTkavf~EtigNP~~ 161 (426)
T COG2873 102 DNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDP-----ENFEAAIDE------NTKAVFAETIGNPGL 161 (426)
T ss_pred CeeEeeccccCchHHHHHHHHHhcCcEEEEeCCCCH-----HHHHHHhCc------ccceEEEEeccCCCc
Confidence 455555555663 23568999999999999998 888877643 556888888766555
No 112
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=58.30 E-value=33 Score=33.31 Aligned_cols=101 Identities=17% Similarity=0.137 Sum_probs=62.8
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+...|++.|-+++. +-|+.. ..|.++|..... +
T Consensus 9 l~~~L~~~GV~~vFGvpG~~~-----~~l~dal~~~~~---~-------------------------------------- 42 (597)
T PRK08273 9 ILERLREWGVRRVFGYPGDGI-----NGLLGALGRADD---K-------------------------------------- 42 (597)
T ss_pred HHHHHHHCCCCEEEEeCCCch-----HHHHHHHHhccC---C--------------------------------------
Confidence 35789999998765 778866 677777743110 0
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
=+|+ ..--|++++-+|-|.|+...++-. +..+-..+.||.++........- .-.++|.++.
T Consensus 43 --i~~i-~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~A~~d~vPvl~I~G~~~~~~~-~~~~~q~~d~ 118 (597)
T PRK08273 43 --PEFV-QARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHLLNGLYDAKLDHVPVVAIVGQQARAAL-GGHYQQEVDL 118 (597)
T ss_pred --CeEE-EeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCchhhc-CCCCCCccCH
Confidence 0222 234599999999999976443433 33334568999988766554321 1225676766
Q ss_pred HHHhccC
Q psy10436 196 IAMFRTI 202 (208)
Q Consensus 196 ia~~r~l 202 (208)
.++++.+
T Consensus 119 ~~l~~~v 125 (597)
T PRK08273 119 QSLFKDV 125 (597)
T ss_pred HHHHHHH
Confidence 6666653
No 113
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=58.28 E-value=29 Score=33.80 Aligned_cols=101 Identities=15% Similarity=0.095 Sum_probs=64.7
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+...+++.|-+++. +-|... ..|.+++...+ +
T Consensus 37 l~~~L~~~GV~~vFgipG~~~-----~~l~dal~~~~----~-------------------------------------- 69 (612)
T PRK07789 37 VVRSLEELGVDVVFGIPGGAI-----LPVYDPLFDST----K-------------------------------------- 69 (612)
T ss_pred HHHHHHHCCCCEEEEcCCcch-----HHHHHHHhccC----C--------------------------------------
Confidence 45889999999765 677765 56777663210 0
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
=+++. .--|++++.+|.|.|+.-.++.+ +..+-+.+.||.++........-.. ..+|.++.
T Consensus 70 --i~~v~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~~A~~~~~PllvI~G~~~~~~~~~-~~~q~~d~ 145 (612)
T PRK07789 70 --VRHVL-VRHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLIGT-DAFQEADI 145 (612)
T ss_pred --ceEEE-eccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCC-CcCcccch
Confidence 12333 35699999999999977333443 3334456899998887666532222 34777777
Q ss_pred HHHhccCC
Q psy10436 196 IAMFRTIP 203 (208)
Q Consensus 196 ia~~r~lP 203 (208)
.+++|.+-
T Consensus 146 ~~l~~~~t 153 (612)
T PRK07789 146 VGITMPIT 153 (612)
T ss_pred hhhhhcce
Confidence 77777653
No 114
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=58.28 E-value=31 Score=33.40 Aligned_cols=61 Identities=15% Similarity=-0.012 Sum_probs=40.4
Q ss_pred ccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 141 AEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 141 aE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
-|++++.+|-|.|+...++.. +..+-..+.||.++........-..| .+|.+.+..++|.+
T Consensus 49 hE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-~~Qe~d~~~l~~~~ 124 (578)
T PRK06546 49 HEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIASHIPSAQIGSG-FFQETHPDRLFVEC 124 (578)
T ss_pred cHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCccccCCC-CccccChhhhcccc
Confidence 599999999999988544543 22233458999988875544322223 36777777777754
No 115
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=57.93 E-value=34 Score=32.79 Aligned_cols=62 Identities=15% Similarity=0.057 Sum_probs=41.4
Q ss_pred cccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 140 IAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 140 IaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
--|++++.+|.|.|+.-.++.+ +..+-+.+.||+++........ .....+|.++..+++|.+
T Consensus 46 ~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~g~~~~~~-~~~~~~q~~d~~~~~~~~ 122 (558)
T TIGR00118 46 RHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPTSL-IGSDAFQEADILGITMPI 122 (558)
T ss_pred CcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCCccc-cCCCCCcccChhhhhcCc
Confidence 4599999999999966444443 3334456899998876555421 122357877777777765
No 116
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=57.69 E-value=42 Score=27.08 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=33.1
Q ss_pred ccccccHHHHHHHHHhCCCcccE-------------EEecc-ccCCCcEEEEecCCc
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF-------------IRMGA-ISQTNVNFVGSHCGV 181 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~-------------ir~~a-~~~~~v~~v~~~~G~ 181 (208)
.-+|+..+++|||.++.|.++.+ +..+. ..+.||.++.+.-|-
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~g~rg~ 96 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAILMQSSGLGNSINALASLNKTYGIPLPILASWRGV 96 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEEEEeCCcHHHHHHHHHHHHHcCCCCEEEEEeccCC
Confidence 67899999999999998885544 33333 568999999977776
No 117
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=55.91 E-value=29 Score=33.15 Aligned_cols=62 Identities=13% Similarity=0.070 Sum_probs=42.2
Q ss_pred cccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 140 IAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 140 IaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
--|++++.+|-|.|+.-.+|.+ +..+-+.+.||+++........-..| .+|.++..++++.+
T Consensus 45 ~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q~~d~~~~~~~~ 121 (548)
T PRK08978 45 RHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLIGTD-AFQEIDVLGLSLAC 121 (548)
T ss_pred ccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCCC-CCcccchhccccCc
Confidence 5699999999999987444543 33334568999998776665322222 47777777777765
No 118
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=55.17 E-value=34 Score=29.41 Aligned_cols=46 Identities=17% Similarity=0.036 Sum_probs=36.8
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecC
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKG 103 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG 103 (208)
.....+++|...+. +..++. ++|.++++++.+. ++|++|.+.+.+-
T Consensus 156 ~~~iA~a~G~~~~~~~~v~~~-----~el~~al~~a~~~-~gP~lIev~~~C~ 202 (235)
T cd03376 156 LPLIMAAHNIPYVATASVAYP-----EDLYKKVKKALSI-EGPAYIHILSPCP 202 (235)
T ss_pred HHHHHHHcCCcEEEEEcCCCH-----HHHHHHHHHHHhC-CCCEEEEEECCCC
Confidence 45677899998764 566776 8999999999875 4799999998764
No 119
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=54.25 E-value=35 Score=32.83 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=41.8
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
.--|++++.+|.|.|+...++-. +..+-..+.||.+++.......-.. ..+|.+++.+++|.+
T Consensus 47 ~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~~-~~~q~~d~~~~~~~~ 124 (563)
T PRK08527 47 TRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLIGT-DAFQEIDAVGISRPC 124 (563)
T ss_pred eccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC-CCCcccchhhhhhcc
Confidence 45699999999999966544443 3333456899998876655432112 247778777777764
No 120
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=52.89 E-value=26 Score=36.50 Aligned_cols=53 Identities=9% Similarity=0.030 Sum_probs=42.5
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc---CCCCCEEEEEEeecCCCCCcc
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ---VKGKPTALIAKTFKGKDFPNI 109 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~---~~~kP~vIi~~T~KG~G~~~~ 109 (208)
..++.+++|...+.|||+|+ +++.+|.+.|.+ .-++|++|-+.|-.=.|-...
T Consensus 401 ~sd~Ak~~giP~~~VDG~D~-----~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~ 456 (924)
T PRK09404 401 CTDVAKMVQAPIFHVNGDDP-----EAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEG 456 (924)
T ss_pred HHHHHeecCCcEEEEcCCCH-----HHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCC
Confidence 34677899999999999998 888888877753 236999999999888887543
No 121
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=52.62 E-value=43 Score=32.10 Aligned_cols=65 Identities=8% Similarity=-0.061 Sum_probs=42.8
Q ss_pred eccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 138 CFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 138 ~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
..--|++++.+|.|.|+...+|.. +-.+-+.+.||+++........- .-.++|.++...++|.+
T Consensus 44 ~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~G~~~~~~~-~~~~~q~~d~~~l~~~v 122 (549)
T PRK06457 44 QVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDMI-GHDYFQEVNLTKLFDDV 122 (549)
T ss_pred EeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEecCCCcccc-CCCcccccchhhhhccc
Confidence 345699999999999987654543 22334568999888765544322 22346777778887765
Q ss_pred C
Q psy10436 203 P 203 (208)
Q Consensus 203 P 203 (208)
-
T Consensus 123 t 123 (549)
T PRK06457 123 A 123 (549)
T ss_pred e
Confidence 3
No 122
>PRK07586 hypothetical protein; Validated
Probab=52.35 E-value=37 Score=32.13 Aligned_cols=62 Identities=13% Similarity=0.024 Sum_probs=39.3
Q ss_pred cccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 140 IAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 140 IaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
--|++.+.+|.|.|+...++-. +..+-..+.||+++........-. -..||.++...++|.+
T Consensus 46 rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~G~~~~~~~~-~~~~q~~d~~~~~~~v 122 (514)
T PRK07586 46 LFEGVATGAADGYARMAGKPAATLLHLGPGLANGLANLHNARRARTPIVNIVGDHATYHRK-YDAPLTSDIEALARPV 122 (514)
T ss_pred ccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHHHHHHhcCCCEEEEecCCchhccC-CCcccccchhhhhccc
Confidence 4599999999999977444443 222335689999887665442211 1236666666666654
No 123
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=51.81 E-value=73 Score=25.54 Aligned_cols=43 Identities=16% Similarity=-0.110 Sum_probs=30.3
Q ss_pred eccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCc
Q psy10436 138 CFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGV 181 (208)
Q Consensus 138 ~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~ 181 (208)
.---|++.+.+|.|.++.. ++.+ +-.+...+.|+.++......
T Consensus 40 ~~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~ 97 (162)
T cd07038 40 GNCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPST 97 (162)
T ss_pred eeCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEecCCCc
Confidence 4456999999999999886 4443 22334558999988766554
No 124
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=51.19 E-value=58 Score=26.87 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=32.6
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc---CCCCCEEEEEEeecCC
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ---VKGKPTALIAKTFKGK 104 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~---~~~kP~vIi~~T~KG~ 104 (208)
..--+++|.+...|+ +. ++|.+||+++.. ..++|++|-+.+....
T Consensus 150 ~~lA~a~G~~~~~v~--~~-----~el~~al~~a~~~~~~~~~p~liev~i~~~~ 197 (202)
T cd02006 150 VKVAEGLGCKAIRVT--KP-----EELAAAFEQAKKLMAEHRVPVVVEAILERVT 197 (202)
T ss_pred HHHHHHCCCEEEEEC--CH-----HHHHHHHHHHHHhcccCCCcEEEEEEecccc
Confidence 345577787776663 33 788999998875 3578999999986543
No 125
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=50.32 E-value=37 Score=32.55 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=35.1
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKG 103 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG 103 (208)
.....++||++...|+ +. ++|.++++++.. .++|++|.+.|-+.
T Consensus 497 ~~~~a~a~G~~~~~v~--~~-----~el~~al~~a~~-~~gp~li~v~~~~~ 540 (557)
T PRK08199 497 FAALARAYGGHGETVE--RT-----EDFAPAFERALA-SGKPALIEIRIDPE 540 (557)
T ss_pred HHHHHHHCCCeEEEeC--CH-----HHHHHHHHHHHh-CCCCEEEEEEeCHH
Confidence 4567789999988875 34 889999998876 46899999999653
No 126
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=49.71 E-value=13 Score=32.08 Aligned_cols=69 Identities=14% Similarity=0.042 Sum_probs=41.8
Q ss_pred ceeeccccccHHHHHHHHHhCCCcccE--------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhc
Q psy10436 135 YIECFIAEQNLVGVAIGAACRNRTVPF--------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFR 200 (208)
Q Consensus 135 ~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r 200 (208)
.+.-.-.|..+++++.|.|+.|.+ .+ +-..+..++|+.++....+. .+.-++||+.-.|+-..|
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~r-a~t~ts~~Gl~lm~e~l~~a~~~~~P~V~~~~~R~g-~~~g~~~~~~q~D~~~~~ 115 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGAR-AMTATSGPGLNLMAEPLYWAAGTELPIVIVVVQRAG-PSPGLSTQPEQDDLMAAR 115 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT---EEEEEECCHHHHHCCCHHHHHHTT--EEEEEEEB----SSSB--SB-SHHHHHTT
T ss_pred EEEEecchHHHHHHHHHHHhcCCc-eEEeecCCcccccHhHHHHHHHcCCCEEEEEEECCC-CCCCCcCcCChhHHHHHH
Confidence 556677899999999999999985 44 33346789997666554433 243478999999999888
Q ss_pred cCCCc
Q psy10436 201 TIPAC 205 (208)
Q Consensus 201 ~lPn~ 205 (208)
..+-+
T Consensus 116 d~~~~ 120 (230)
T PF01855_consen 116 DSGWI 120 (230)
T ss_dssp TSS-E
T ss_pred hcCeE
Confidence 55543
No 127
>PRK07524 hypothetical protein; Provisional
Probab=49.50 E-value=52 Score=31.34 Aligned_cols=64 Identities=16% Similarity=0.029 Sum_probs=42.1
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCcc-ccCC-CCCCCChhHHHHhcc
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVS-IGED-GPSQMALEDIAMFRT 201 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~-~g~d-G~TH~~ieDia~~r~ 201 (208)
.--|++++.+|-|.|+...++-+ +..+-..+.||.++....... .+.+ +..|+.+...+++|.
T Consensus 45 ~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~ 124 (535)
T PRK07524 45 PRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAG 124 (535)
T ss_pred eccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhh
Confidence 34599999999999976554433 333345689999887655442 2322 456766677777776
Q ss_pred C
Q psy10436 202 I 202 (208)
Q Consensus 202 l 202 (208)
+
T Consensus 125 ~ 125 (535)
T PRK07524 125 V 125 (535)
T ss_pred h
Confidence 4
No 128
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=48.12 E-value=83 Score=30.38 Aligned_cols=106 Identities=14% Similarity=0.022 Sum_probs=64.0
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+.+.+++.|-+++. +-|... ..|.+++.+.+.. |+
T Consensus 13 l~~~L~~~GV~~iFgvpG~~~-----~~l~dal~~~~~~---------------g~------------------------ 48 (569)
T PRK08327 13 FLELLKELGVDYIFINSGTDY-----PPIIEAKARARAA---------------GR------------------------ 48 (569)
T ss_pred HHHHHHHCCCCEEEEcCCCCc-----HHHHHHHHhhhhc---------------CC------------------------
Confidence 45889999999876 777766 6677777532210 00
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCC-------C
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDG-------P 188 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG-------~ 188 (208)
+-=||+.+ --|++++.+|-|.|+...++.. +..+-+.+.||.++........-..+ .
T Consensus 49 ~~i~~V~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~ 127 (569)
T PRK08327 49 PLPEFVIC-PHEIVAISMAHGYALVTGKPQAVMVHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIH 127 (569)
T ss_pred CCCcEEec-CCHHHHHHHHHHHHHhhCCCeEEEEecCHHHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcc
Confidence 00133322 3499999999999988654443 33344568999988876544221111 1
Q ss_pred CCCC-hhHHHHhccC
Q psy10436 189 SQMA-LEDIAMFRTI 202 (208)
Q Consensus 189 TH~~-ieDia~~r~l 202 (208)
++|- ++..+++|.+
T Consensus 128 ~~qe~~d~~~~~~~v 142 (569)
T PRK08327 128 WTQEMRDQGGLVREY 142 (569)
T ss_pred cchhhhhHHHHHhhh
Confidence 2344 5667777754
No 129
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.59 E-value=36 Score=29.41 Aligned_cols=60 Identities=22% Similarity=0.145 Sum_probs=41.1
Q ss_pred CcchHHHH--HhhhHH-HHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCC
Q psy10436 40 GELVATRL--AYGIGL-AKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGK 104 (208)
Q Consensus 40 dNLi~i~D--~~G~~~-~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~ 104 (208)
-++.+++- .||+.. .-++.||.+++..+++-- ...++.+.++.+++ ++-++|..++-||.
T Consensus 68 ~~~~amvS~s~DGEliA~~l~kfG~~~IRGSs~Kg---g~~Alr~l~k~Lk~--G~~i~itpDgPkGp 130 (214)
T COG2121 68 KKIYAMVSPSRDGELIARLLEKFGLRVIRGSSNKG---GISALRALLKALKQ--GKSIAITPDGPKGP 130 (214)
T ss_pred CcEEEEEcCCcCHHHHHHHHHHcCceEEeccCCcc---hHHHHHHHHHHHhC--CCcEEEcCCCCCCC
Confidence 34555554 688865 677999999999877542 33666676666664 56677777777763
No 130
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=46.81 E-value=60 Score=31.20 Aligned_cols=62 Identities=15% Similarity=0.028 Sum_probs=39.2
Q ss_pred cccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 140 IAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 140 IaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
--|++++.+|-|.|+.-.+|-. +..+-..+.||+++........-..+ .+|.++..++++.+
T Consensus 52 ~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-~~q~~d~~~~~~~i 128 (561)
T PRK06048 52 RHEQAAAHAADGYARATGKVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMIGND-AFQEADITGITMPI 128 (561)
T ss_pred ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHHHHHhhcCCCEEEEeccCCccccCCC-CccccchhhhccCc
Confidence 5699999999999976433443 33344568999988766554321122 35556656666554
No 131
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=46.16 E-value=35 Score=35.52 Aligned_cols=53 Identities=6% Similarity=0.036 Sum_probs=42.2
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc---CCCCCEEEEEEeecCCCCCccC
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ---VKGKPTALIAKTFKGKDFPNIE 110 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~---~~~kP~vIi~~T~KG~G~~~~e 110 (208)
..+-+++|..++.|||+|+ +++..|.+.|.+ ..++|++|-+.|-.=.|-....
T Consensus 403 sd~Ak~ygiP~~~VDG~D~-----~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D 458 (929)
T TIGR00239 403 SDLAKMIQAPIFHVNADDP-----EAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEAD 458 (929)
T ss_pred HHHheecCCCEEEECCCCH-----HHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCC
Confidence 4677889999999999998 888888877653 2369999999998888875433
No 132
>KOG1182|consensus
Probab=45.90 E-value=11 Score=34.75 Aligned_cols=42 Identities=29% Similarity=0.370 Sum_probs=33.1
Q ss_pred HHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcC---CCCCEEEEEEee
Q psy10436 55 KLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQV---KGKPTALIAKTF 101 (208)
Q Consensus 55 k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~---~~kP~vIi~~T~ 101 (208)
|=.+.|...+.|||+|. -++.+|.+.|+.. .++|++|-+-|-
T Consensus 274 kG~aYGi~sIRVDGnD~-----lAvYnA~k~ARe~av~e~rPvliEamtY 318 (432)
T KOG1182|consen 274 KGPAYGIRSIRVDGNDA-----LAVYNAVKEAREMAVTEQRPVLIEAMTY 318 (432)
T ss_pred eccccceEEEEecCcch-----HHHHHHHHHHHHHHHhccCchhhhhhhh
Confidence 33477888899999998 7888888888753 359999988774
No 133
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=45.85 E-value=60 Score=31.41 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=41.5
Q ss_pred cccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 140 IAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 140 IaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
--|++++.+|-|.|+.-.++-. +..+-+.+.||+++........ .....+|.+++.+++|.+
T Consensus 45 ~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~G~~~~~~-~~~~~~q~~d~~~l~~~~ 121 (586)
T PRK06276 45 RHEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKL-IGNDAFQEIDALGIFMPI 121 (586)
T ss_pred ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCCccc-cCCCCCccccHhhHHhhh
Confidence 3699999999999977433443 3344456899998876555432 122357777777777754
No 134
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=44.34 E-value=69 Score=35.38 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=67.4
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+.+.+++.|-+++. +-|.-. ..|..|+..
T Consensus 307 lv~~L~~~GV~~vFg~PG~~~-----~pL~dAl~~--------------------------------------------- 336 (1655)
T PLN02980 307 IIEECTRLGLTYFCVAPGSRS-----SPLAIAASN--------------------------------------------- 336 (1655)
T ss_pred HHHHHHHcCCCEEEEeCCCCC-----HHHHHHHHh---------------------------------------------
Confidence 35889999999776 667755 567776631
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
.|+--+=...-|++++-+|-|.|+.-.+|.+ +-.+.+.+.|++++........-..| .+|.+++
T Consensus 337 ~~~i~~i~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l~av~eA~~d~vPlLvItgd~p~~~~~~g-a~Q~iDq 415 (1655)
T PLN02980 337 HPLTTCIACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLLPAVVEASQDFVPLLLLTADRPPELQDAG-ANQAINQ 415 (1655)
T ss_pred CCCCeEEeccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHhcCC-CCcccch
Confidence 1111122456699999999999988665554 22334568999988776655332233 4888998
Q ss_pred HHHhccCC
Q psy10436 196 IAMFRTIP 203 (208)
Q Consensus 196 ia~~r~lP 203 (208)
.++++.+-
T Consensus 416 ~~lf~pvt 423 (1655)
T PLN02980 416 VNHFGSFV 423 (1655)
T ss_pred hhHHHhhh
Confidence 88888654
No 135
>PRK07064 hypothetical protein; Provisional
Probab=42.93 E-value=93 Score=29.60 Aligned_cols=50 Identities=14% Similarity=0.075 Sum_probs=35.6
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccC
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIE 110 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e 110 (208)
...-++||.+...|+ .. ++|.++|+++.+ .++|++|.+.+.....+++.+
T Consensus 488 ~~lA~a~G~~~~~v~--~~-----~eL~~al~~a~~-~~~p~lIeV~~~~~~~~~~~~ 537 (544)
T PRK07064 488 ALLAASLGLPHWRVT--SA-----DDFEAVLREALA-KEGPVLVEVDMLSIGPFAAAF 537 (544)
T ss_pred HHHHHHCCCeEEEeC--CH-----HHHHHHHHHHHc-CCCCEEEEEEcccccccCCCC
Confidence 456678888877663 34 889999999876 468999999986443444333
No 136
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=42.70 E-value=68 Score=27.53 Aligned_cols=46 Identities=24% Similarity=0.105 Sum_probs=33.9
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeec
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFK 102 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~K 102 (208)
...-.+++|...+. +.-.+. ++|.+||+++.+..++|++|.+.+..
T Consensus 158 ~~~iA~a~G~~~~~~~~v~~~-----~~l~~al~~al~~~~GP~lI~v~i~c 204 (237)
T cd02018 158 LVLIAATHGCVYVARLSPALK-----KHFLKVVKEAISRTDGPTFIHAYTPC 204 (237)
T ss_pred HHHHHHHCCCCEEEEEccCCH-----HHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 45667889998875 333445 88999999987634579999999844
No 137
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=42.58 E-value=41 Score=31.10 Aligned_cols=67 Identities=22% Similarity=0.263 Sum_probs=46.6
Q ss_pred cCCCcceeeccccccHHHHHHHHHhCCCcccE--------------EEeccccCCCcEE-EEecCCccccCCCCCCCChh
Q psy10436 130 AYPDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRMGAISQTNVNF-VGSHCGVSIGEDGPSQMALE 194 (208)
Q Consensus 130 ~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir~~a~~~~~v~~-v~~~~G~~~g~dG~TH~~ie 194 (208)
++-..|+++= .|..++++|.|-|.+|.+ .+ +-+.+...+|+.+ +..++|-+.|- +|+..--
T Consensus 46 ~~~~~~vq~E-~E~aA~~~a~GAs~aG~R-a~TaTSg~Gl~lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~--p~~~~q~ 121 (376)
T PRK08659 46 KVGGVFIQME-DEIASMAAVIGASWAGAK-AMTATSGPGFSLMQENIGYAAMTETPCVIVNVQRGGPSTGQ--PTKPAQG 121 (376)
T ss_pred hhCCEEEEeC-chHHHHHHHHhHHhhCCC-eEeecCCCcHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCC--CCCcCcH
Confidence 3445677777 999999999999999985 55 3344566899655 45666654443 5676666
Q ss_pred HHHHhc
Q psy10436 195 DIAMFR 200 (208)
Q Consensus 195 Dia~~r 200 (208)
|+-..|
T Consensus 122 D~~~~~ 127 (376)
T PRK08659 122 DMMQAR 127 (376)
T ss_pred HHHHHh
Confidence 766666
No 138
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=42.20 E-value=85 Score=25.90 Aligned_cols=47 Identities=17% Similarity=-0.014 Sum_probs=34.3
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCC
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGK 104 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~ 104 (208)
.....+++|...+. +.-.+. ++|.++|+++.+. ++|++|.+.+..-.
T Consensus 140 ~~~iA~a~G~~~~~~~~v~~~-----~el~~al~~al~~-~gp~vIev~~~C~~ 187 (193)
T cd03375 140 PLALALAAGATFVARGFSGDI-----KQLKEIIKKAIQH-KGFSFVEVLSPCPT 187 (193)
T ss_pred HHHHHHHCCCCEEEEEecCCH-----HHHHHHHHHHHhc-CCCEEEEEECCCCC
Confidence 44567788888752 344555 8899999998864 67999999886643
No 139
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=41.83 E-value=78 Score=30.31 Aligned_cols=64 Identities=11% Similarity=0.051 Sum_probs=41.7
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccc-cCCCCCCCChhHHHHhccC
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSI-GEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~-g~dG~TH~~ieDia~~r~l 202 (208)
.--|++++.+|.|.|+.-.++-+ +..+-..+.||.++........ +..-.+||.++..+++|.+
T Consensus 46 ~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~v 125 (554)
T TIGR03254 46 FRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPF 125 (554)
T ss_pred eCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhh
Confidence 34599999999999976433433 3333456899998876655432 1122357878888888764
No 140
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=41.08 E-value=61 Score=30.86 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=32.5
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEe
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKT 100 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T 100 (208)
.....++||++.+.|+ +. ++|.+|++++.+ .++|++|.+.|
T Consensus 489 ~~~~a~~~G~~~~~v~--~~-----~~l~~al~~a~~-~~~p~liev~~ 529 (530)
T PRK07092 489 FVALARGYGCEAVRVS--DA-----AELADALARALA-ADGPVLVEVEV 529 (530)
T ss_pred HHHHHHHCCCeEEEeC--CH-----HHHHHHHHHHHh-CCCCEEEEEEc
Confidence 3467789999988875 34 889999998875 46899999876
No 141
>PRK08266 hypothetical protein; Provisional
Probab=40.95 E-value=72 Score=30.39 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=35.6
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKD 105 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G 105 (208)
.....+++|.++..|+. . ++|.++++++.+. ++|++|.+.|-++..
T Consensus 484 ~~~la~a~G~~~~~v~~--~-----~el~~al~~a~~~-~~p~liev~i~~~~~ 529 (542)
T PRK08266 484 FVKLAESFGVAAFRVDS--P-----EELRAALEAALAH-GGPVLIEVPVPRGSE 529 (542)
T ss_pred HHHHHHHcCCeEEEeCC--H-----HHHHHHHHHHHhC-CCcEEEEEEecCCCC
Confidence 34567888988887753 4 7899999988753 579999999988743
No 142
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=40.88 E-value=54 Score=31.78 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=34.4
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCC
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGK 104 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~ 104 (208)
...-+++|.+...| ++. ++|.++|+++.+..++|++|.+.+.+-.
T Consensus 521 ~~iA~a~G~~~~~v--~~~-----~eL~~al~~a~~~~~~p~lieV~i~~~~ 565 (587)
T PRK06965 521 VKLAEAYGHVGMRI--EKT-----SDVEPALREALRLKDRTVFLDFQTDPTE 565 (587)
T ss_pred HHHHHHCCCEEEEE--CCH-----HHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence 34557888887766 334 8899999998765578999999997643
No 143
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=40.31 E-value=60 Score=31.69 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=35.3
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeec
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFK 102 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~K 102 (208)
...--+++|-+++.| +++ ++|.+||+.+|++. |+++|+.+|..
T Consensus 534 fA~~A~s~Ga~~~kv--~~i-----~eL~aAL~~Ak~~~-~ttvi~I~t~P 576 (617)
T COG3962 534 FAAHAESYGAKAYKV--GTI-----EELEAALADAKASD-RTTVIVIDTDP 576 (617)
T ss_pred HHHHHhhcCceeEec--CCH-----HHHHHHHHHHHhCC-CCEEEEEecCC
Confidence 345678899998887 366 99999999999864 89999999965
No 144
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=38.96 E-value=57 Score=33.14 Aligned_cols=65 Identities=18% Similarity=0.108 Sum_probs=43.4
Q ss_pred CcceeeccccccHHHHHHHHHhCCCcccE-----------------------EEeccc-cCCC-cEEEEecCCccccCCC
Q psy10436 133 DRYIECFIAEQNLVGVAIGAACRNRTVPF-----------------------IRMGAI-SQTN-VNFVGSHCGVSIGEDG 187 (208)
Q Consensus 133 ~r~~~~GIaE~~mv~~AaGlA~~G~~~~~-----------------------ir~~a~-~~~~-v~~v~~~~G~~~g~dG 187 (208)
+|+++ -.+|+...|.+.|.++.|..-.| .|+... ...+ ..++.|..=.--+.+|
T Consensus 461 GRV~e-~LSEh~c~Gwlegy~LtGr~glf~sYEaF~~iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~TS~vw~QdhNG 539 (793)
T COG3957 461 GRVME-VLSEHACQGWLEGYLLTGRHGLFASYEAFAHIVDSMFNQHAKWLKVTREVEWRRPIPSLNYLLTSHVWRQDHNG 539 (793)
T ss_pred ceeeh-hhcHHHHHHHHHHHHhcCCccceeeHHHHHHHHHHHHhhhHHHHHHHHhcccCCCCCcccceeehhhhhcccCC
Confidence 47777 78999999999999999985444 111111 1122 3455666556678999
Q ss_pred CCCCChhHHHH
Q psy10436 188 PSQMALEDIAM 198 (208)
Q Consensus 188 ~TH~~ieDia~ 198 (208)
-|||..+=+..
T Consensus 540 fsHQdPgf~~~ 550 (793)
T COG3957 540 FSHQDPGFIDH 550 (793)
T ss_pred CccCCchHHHH
Confidence 99996554443
No 145
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=38.93 E-value=1.3e+02 Score=21.52 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=39.2
Q ss_pred CcchHHHH--HhhhHH-HHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecC
Q psy10436 40 GELVATRL--AYGIGL-AKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKG 103 (208)
Q Consensus 40 dNLi~i~D--~~G~~~-~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG 103 (208)
.++.+++. .||+.. .-++.||++++....+- ....+|.+.++.+++ +...+|..+--+|
T Consensus 10 ~~~~~lvS~s~DGe~ia~~~~~~G~~~iRGSs~r---gg~~Alr~~~~~lk~--G~~~~itpDGPrG 71 (74)
T PF04028_consen 10 RKIAALVSRSRDGELIARVLERFGFRTIRGSSSR---GGARALREMLRALKE--GYSIAITPDGPRG 71 (74)
T ss_pred CCEEEEEccCcCHHHHHHHHHHcCCCeEEeCCCC---cHHHHHHHHHHHHHC--CCeEEEeCCCCCC
Confidence 45555554 577765 77899999999876332 235788888888873 4566665554444
No 146
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=38.77 E-value=1.1e+02 Score=29.54 Aligned_cols=99 Identities=11% Similarity=0.029 Sum_probs=62.1
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+...+++.|-+.+. +-|+.. ..|.++|.. .
T Consensus 21 l~~~L~~~GV~~vFGipG~~~-----~~l~dal~~--~------------------------------------------ 51 (570)
T PRK06725 21 VIQCLKKLGVTTVFGYPGGAI-----LPVYDALYE--S------------------------------------------ 51 (570)
T ss_pred HHHHHHHcCCCEEEEcCCcch-----HHHHHHHHh--c------------------------------------------
Confidence 45889999999765 677765 566666532 0
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
.=+|+. .--|++++.+|-|.|+...++-. +..+-..+.||.++........-.. ..+|.++.
T Consensus 52 -~i~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~~-~~~q~~d~ 128 (570)
T PRK06725 52 -GLKHIL-TRHEQAAIHAAEGYARASGKVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIGK-DGFQEADV 128 (570)
T ss_pred -CCcEEE-ecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHHhhcCcCEEEEecCCCcccccC-CCCcccch
Confidence 012322 33599999999999976443433 2222345899998876655532112 24677777
Q ss_pred HHHhccC
Q psy10436 196 IAMFRTI 202 (208)
Q Consensus 196 ia~~r~l 202 (208)
..++|.+
T Consensus 129 ~~l~~~i 135 (570)
T PRK06725 129 VGITVPV 135 (570)
T ss_pred hhhhhcc
Confidence 7777764
No 147
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=38.30 E-value=99 Score=25.03 Aligned_cols=42 Identities=7% Similarity=0.014 Sum_probs=32.2
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeec
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFK 102 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~K 102 (208)
..--+++|.+...++ +. ++|.++|+++.+. ++|++|.+.|-.
T Consensus 130 ~~~a~a~G~~~~~v~--~~-----~el~~al~~a~~~-~~p~liev~~~~ 171 (177)
T cd02010 130 VKYAESFGAKGYRIE--SA-----DDLLPVLERALAA-DGVHVIDCPVDY 171 (177)
T ss_pred HHHHHHCCCEEEEEC--CH-----HHHHHHHHHHHhC-CCCEEEEEEecc
Confidence 455678888877764 34 8899999999764 689999999843
No 148
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=37.85 E-value=97 Score=20.80 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=36.0
Q ss_pred HHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCcc
Q psy10436 54 AKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNI 109 (208)
Q Consensus 54 ~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~ 109 (208)
.+++..|+++..+.|+.. .++-.+.++.++.. ...++++...-+.|+...
T Consensus 1 ~~L~~~~~~~~~i~~~~~----~~~r~~~~~~f~~~--~~~vli~t~~~~~Gid~~ 50 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMS----QKERQEILKKFNSG--EIRVLIATDILGEGIDLP 50 (78)
T ss_dssp HHHHHTTSSEEEESTTSH----HHHHHHHHHHHHTT--SSSEEEESCGGTTSSTST
T ss_pred CChHHCCCcEEEEECCCC----HHHHHHHHHHhhcc--CceEEEeecccccccccc
Confidence 368899999999998754 25556666666654 347888877888888653
No 149
>cd08800 Death_UNC5A Death domain found in Uncoordinated-5A. Death Domain (DD) found in Uncoordinated-5A (UNC5A). UNC5A is part of the UNC-5 homolog family. It is a receptor for the secreted netrin-1 and plays a critical role in neuronal development and differentiation, as well as axon-guidance. It also plays a role in regulating apoptosis in non-neuronal cells as a downstream target of p53. UNC5 proteins are transmembrane proteins with an extracellular domain consisting of two immunoglobulin repeats, two thrombospondin type-I modules and an intracellular region containing a ZU-5 domain, UPA domain and a DD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathway
Probab=35.78 E-value=39 Score=25.01 Aligned_cols=53 Identities=11% Similarity=-0.019 Sum_probs=39.5
Q ss_pred CcCccccCCCCCCCCCcchHHHHH----hhhHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhh
Q psy10436 25 DISNIKLSSPPSYKKGELVATRLA----YGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEAS 87 (208)
Q Consensus 25 d~~~~~~~~A~~~kLdNLi~i~D~----~G~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak 87 (208)
+-++.|..+|.+.+++..+..... ....++.||+.... +|. + .+|..+|++.-
T Consensus 18 ~~G~DWr~LA~kL~ld~~~~~f~~~pSPT~~LLd~WEa~~~~----~g~-l-----~~L~~~l~emG 74 (84)
T cd08800 18 PNGADWRLLAQKLKLDSHLSFFASKSSPTAVILNLWEAQHFP----NGN-L-----NQLAAVVAEIG 74 (84)
T ss_pred CCCCcHHHHHHHcCCccHHHHHHcCCChHHHHHHHHHhccCC----CCc-H-----HHHHHHHHHhC
Confidence 456779999999999998777763 23467889876544 444 4 88999988764
No 150
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=35.32 E-value=86 Score=30.22 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=34.9
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKG 103 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG 103 (208)
.....++||.....|+ +. ++|.++|+++.+. ++|++|.+.|-+.
T Consensus 519 ~~~~A~a~G~~~~~v~--~~-----~el~~al~~a~~~-~gp~lIev~~~~~ 562 (578)
T PRK06112 519 HAAIARACGCDGVRVE--DP-----AELAQALAAAMAA-PGPTLIEVITDPS 562 (578)
T ss_pred HHHHHHHCCCeEEEeC--CH-----HHHHHHHHHHHhC-CCCEEEEEEcCcc
Confidence 4567889999988774 34 8899999998764 5799999999653
No 151
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=34.14 E-value=1.1e+02 Score=23.56 Aligned_cols=52 Identities=27% Similarity=0.256 Sum_probs=35.6
Q ss_pred HHHHhhhHH-HHHHhcCCeEEE--EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCC
Q psy10436 45 TRLAYGIGL-AKLAASNSRVIA--LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 45 i~D~~G~~~-~k~~a~G~~vi~--VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~ 106 (208)
++|.++..+ ..++.+|+++.. +-.||. ++|.++++++.+..+ ++-|.-|-|.
T Consensus 16 i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~-----~~i~~~i~~~~~~~D-----lvittGG~g~ 70 (133)
T cd00758 16 IEDTNGPALEALLEDLGCEVIYAGVVPDDA-----DSIRAALIEASREAD-----LVLTTGGTGV 70 (133)
T ss_pred eEEchHHHHHHHHHHCCCEEEEeeecCCCH-----HHHHHHHHHHHhcCC-----EEEECCCCCC
Confidence 456777655 779999999875 457887 889999988765322 3334466554
No 152
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=33.79 E-value=1.2e+02 Score=29.28 Aligned_cols=44 Identities=18% Similarity=0.107 Sum_probs=34.8
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKG 103 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG 103 (208)
....-+++|.+...|+ +. ++|.+|++++.+ .++|++|.+.|-+.
T Consensus 489 f~~lA~a~G~~~~~v~--~~-----~el~~al~~a~~-~~gp~lIev~~~~~ 532 (578)
T PRK06546 489 YAAIAAALGIHAVRVE--DP-----KDVRGALREAFA-HPGPALVDVVTDPN 532 (578)
T ss_pred HHHHHHHCCCeeEEeC--CH-----HHHHHHHHHHHh-CCCCEEEEEEeCCC
Confidence 3466788998887775 44 889999999876 46899999999654
No 153
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=33.55 E-value=1.5e+02 Score=28.40 Aligned_cols=100 Identities=18% Similarity=0.159 Sum_probs=60.7
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+.+.+++.|-+++. +-|+.. ..|.+++...
T Consensus 6 l~~~L~~~Gv~~vFGvpG~~~-----~~l~~al~~~-------------------------------------------- 36 (535)
T TIGR03394 6 LLRALKDRGAQEMFGIPGDFA-----LPFFKVIEET-------------------------------------------- 36 (535)
T ss_pred HHHHHHHcCCCEEEECCCccc-----HHHHHHHhhC--------------------------------------------
Confidence 34788999998775 677765 5676666321
Q ss_pred CC-CcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCC--CCCC
Q psy10436 131 YP-DRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGP--SQMA 192 (208)
Q Consensus 131 ~P-~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~--TH~~ 192 (208)
+ =||+. .--|++++-+|-|.|+.-.++.+ +..+...+.||.++........-..+. .||.
T Consensus 37 -~~i~~v~-~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~ 114 (535)
T TIGR03394 37 -GILPLHT-LSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQG 114 (535)
T ss_pred -CCCeEEc-ccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhhHHHHHhhcCCCEEEEECCCCcccccCCceeEeec
Confidence 1 13333 45699999999999987443443 333345689999887665543222222 2554
Q ss_pred --hh-HHHHhccC
Q psy10436 193 --LE-DIAMFRTI 202 (208)
Q Consensus 193 --ie-Dia~~r~l 202 (208)
++ ...+++.+
T Consensus 115 ~~~~~~~~~~~~v 127 (535)
T TIGR03394 115 RTLDSQFQVFKEV 127 (535)
T ss_pred cchHHHHHhhhhh
Confidence 43 34666654
No 154
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=32.57 E-value=1.7e+02 Score=28.41 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=38.2
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhcc
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRT 201 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~ 201 (208)
.--|++++.+|.|.|+.-.++-. +..+-..+.||.++....+...-.. ..+|.++..+++|.
T Consensus 57 ~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~-~~~q~~d~~~~~~~ 133 (585)
T CHL00099 57 VRHEQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGT-DAFQEVDIFGITLP 133 (585)
T ss_pred ecCHHHHHHHHHHHHHhcCCcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCC-CCccccchhhhhcC
Confidence 44699999999999977433443 3333456899988876554321111 23566665555554
No 155
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=32.17 E-value=1.5e+02 Score=26.83 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=37.2
Q ss_pred HHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCC
Q psy10436 53 LAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 53 ~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~ 106 (208)
..-.++.|-.++. ++.-+. .++.+++++|.+.+ .|.+|++.+-+-.|.
T Consensus 164 ~~i~~a~g~~yVA~~~~~~~-----~~~~~~i~~A~~~~-Gps~I~~~spC~~~~ 212 (300)
T PRK11864 164 PDIMAAHKVPYVATASIAYP-----EDFIRKLKKAKEIR-GFKFIHLLAPCPPGW 212 (300)
T ss_pred HHHHHHcCCCEEEEEeCCCH-----HHHHHHHHHHHhCC-CCEEEEEeCCCCCCC
Confidence 4567889988775 676666 78899999988754 699999999766554
No 156
>PRK07524 hypothetical protein; Provisional
Probab=31.97 E-value=99 Score=29.42 Aligned_cols=44 Identities=16% Similarity=0.012 Sum_probs=34.3
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKG 103 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG 103 (208)
.....+++|.+.+.|+ +. ++|.++++++.+. ++|++|.+.+.+=
T Consensus 488 ~~~~A~a~G~~~~~v~--~~-----~el~~al~~a~~~-~~p~liev~~~~~ 531 (535)
T PRK07524 488 FIALARAFGCAAERVA--DL-----EQLQAALRAAFAR-PGPTLIEVDQACW 531 (535)
T ss_pred HHHHHHHCCCcEEEeC--CH-----HHHHHHHHHHHhC-CCCEEEEEECCcc
Confidence 3456788898887774 55 8899999998764 6899999998653
No 157
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=31.67 E-value=1.1e+02 Score=23.93 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=30.8
Q ss_pred HHHHhhhHH-HHHHhcCCeEEE--EcCCCCCCchHHHHHHHHHHhhc
Q psy10436 45 TRLAYGIGL-AKLAASNSRVIA--LDGDTKNSTFSDKLKKAFHEASQ 88 (208)
Q Consensus 45 i~D~~G~~~-~k~~a~G~~vi~--VDGhd~~~~~~~~l~~Al~~ak~ 88 (208)
++|.++..+ ..++++|+++.. +-+||. ++|.++++++.+
T Consensus 24 i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~-----~~i~~~l~~~~~ 65 (144)
T TIGR00177 24 IYDSNGPLLAALLEEAGFNVSRLGIVPDDP-----EEIREILRKAVD 65 (144)
T ss_pred EEeCcHHHHHHHHHHCCCeEEEEeecCCCH-----HHHHHHHHHHHh
Confidence 457777655 789999999876 468887 889999988754
No 158
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=29.95 E-value=1.3e+02 Score=29.42 Aligned_cols=42 Identities=10% Similarity=0.110 Sum_probs=32.2
Q ss_pred HHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeec
Q psy10436 54 AKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFK 102 (208)
Q Consensus 54 ~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~K 102 (208)
.--+++|.....| ++. ++|.++|+++.+..++|.+|.+.+..
T Consensus 536 ~lA~a~G~~~~~V--~~~-----~eL~~al~~a~~~~~~p~lIev~i~~ 577 (612)
T PRK07789 536 KLAEAYGCVGLRC--ERE-----EDVDAVIEKARAINDRPVVIDFVVGK 577 (612)
T ss_pred HHHHHCCCeEEEE--CCH-----HHHHHHHHHHHhcCCCcEEEEEEECC
Confidence 4457778776665 344 88999999988755689999999965
No 159
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.91 E-value=1.2e+02 Score=29.07 Aligned_cols=45 Identities=20% Similarity=0.147 Sum_probs=34.1
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCC
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGK 104 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~ 104 (208)
...-++||.+.+.|+ +. ++|..+|+++.+.+++|++|.+.+....
T Consensus 505 ~~la~a~G~~~~~v~--~~-----~eL~~al~~a~~~~~~p~liev~i~~~~ 549 (574)
T PRK06882 505 AKLAEAYGHVGIQID--TP-----DELEEKLTQAFSIKDKLVFVDVNVDETE 549 (574)
T ss_pred HHHHHHCCCeEEEeC--CH-----HHHHHHHHHHHhcCCCcEEEEEEecCcc
Confidence 345677888777663 33 7899999998776678999999997543
No 160
>PRK08322 acetolactate synthase; Reviewed
Probab=29.89 E-value=1.5e+02 Score=28.21 Aligned_cols=48 Identities=8% Similarity=-0.032 Sum_probs=35.8
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFP 107 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~ 107 (208)
...--++||.+...| ++. ++|.++++++.+. ++|++|.+.|-.....+
T Consensus 487 f~~lA~a~G~~~~~v--~~~-----~eL~~al~~a~~~-~~p~lIev~v~~~~~~~ 534 (547)
T PRK08322 487 FVKYAESYGAKGYRV--ESA-----DDLLPTLEEALAQ-PGVHVIDCPVDYSENDR 534 (547)
T ss_pred HHHHHHHCCCeEEEe--CCH-----HHHHHHHHHHHhC-CCCEEEEEEecCccCcc
Confidence 345668889888776 334 8899999988754 68999999997655544
No 161
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=29.58 E-value=45 Score=32.15 Aligned_cols=62 Identities=16% Similarity=0.115 Sum_probs=42.0
Q ss_pred ccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCC
Q psy10436 141 AEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIP 203 (208)
Q Consensus 141 aE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lP 203 (208)
-|++++.+|.|.|+.-.++.. +..+-..+.||+++......... .-.++|.++...++|.+-
T Consensus 57 hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~-~~~~~Q~~d~~~l~~~vt 133 (578)
T PRK06112 57 TENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQT-DRNAFQELDHIALFQSCT 133 (578)
T ss_pred cHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCccccC-CCCCccccChhhhhcccc
Confidence 699999999999977443443 22233458999988766555322 223578888888887654
No 162
>cd08798 Death_NFkB2_p100 Death domain of the Nuclear Factor-KappaB2 precursor protein p100. Death Domain (DD) of the Nuclear Factor-KappaB2 (NF-kB2) precursor protein p100. The NF-kB family of transcription factors play a central role in cardiovascular growth, stress response, and inflammation by controlling the expression of a network of different genes. There are five NF-kB proteins, all containing an N-terminal REL Homology Domain (RHD). NF-kB2 (or p52) is produced from the processing of the precursor protein p100, which contains ANK repeats and a C-terminal DD in addition to the RHD. It is regulated by the non-canonical NF-kB pathway. The p100 precursor is cytosolic and interacts with RelB. Upon phosphorylation by IKKalpha, p100 is processed to its 52kDa active, DNA binding form and the p52/RelB complex is translocated into the nucleus. The non-canonical pathway plays a role in adaptive immunity and lymphorganogenesis. In general, DDs are protein-protein interaction domains found i
Probab=29.28 E-value=35 Score=24.77 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=38.2
Q ss_pred CCCccCcCccccCCCCCCCCCcchHHHH----HhhhHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhh
Q psy10436 20 DAPKVDISNIKLSSPPSYKKGELVATRL----AYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEAS 87 (208)
Q Consensus 20 ~~~~~d~~~~~~~~A~~~kLdNLi~i~D----~~G~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak 87 (208)
|.|.. +..|...|...+++.++.... ..+..+.-||+. +|+ + +.+.+|++..-
T Consensus 10 d~p~~--g~dW~~LA~kL~l~~l~~~f~~~~SPt~~LLd~yE~~-------~G~-l-----~~L~~aL~~mG 66 (76)
T cd08798 10 NDTQT--DVPWMELAERLGLQSLVDTYKPTQSPPGSLLRSYELA-------GGP-L-----QGLIEALQDMG 66 (76)
T ss_pred cCCCC--CCCHHHHHHHHCcchHHHHHhCCCCchHHHHHHhhcc-------CCC-H-----HHHHHHHHHhC
Confidence 45533 778999999999998877765 234456777765 344 4 88999998763
No 163
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=29.08 E-value=1.7e+02 Score=21.67 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=30.1
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCC
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFP 107 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~ 107 (208)
...|++.||+|+....+.. .+.+.+++.+ .+|.+|.+.+..+..++
T Consensus 20 ~~~l~~~G~~V~~lg~~~~----~~~l~~~~~~-----~~pdvV~iS~~~~~~~~ 65 (119)
T cd02067 20 ARALRDAGFEVIDLGVDVP----PEEIVEAAKE-----EDADAIGLSGLLTTHMT 65 (119)
T ss_pred HHHHHHCCCEEEECCCCCC----HHHHHHHHHH-----cCCCEEEEeccccccHH
Confidence 4678999999977654433 2556555543 36888888777665553
No 164
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=28.90 E-value=1.9e+02 Score=26.14 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=36.2
Q ss_pred HHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCC
Q psy10436 53 LAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 53 ~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~ 106 (208)
..-..+.|-.|+. ++-.+. .++.+++++|.+.+ .|++|++.+-+--|.
T Consensus 168 ~~Ia~a~g~~YVA~~~~~~~-----~~l~~~i~~A~~~~-Gps~I~v~sPC~~~~ 216 (299)
T PRK11865 168 PLIMAAHGIPYVATASIGYP-----EDFMEKVKKAKEVE-GPAYIQVLQPCPTGW 216 (299)
T ss_pred HHHHHHcCCCEEEEEeCCCH-----HHHHHHHHHHHhCC-CCEEEEEECCCCCCC
Confidence 3456678887775 666666 88999999998754 699999999665443
No 165
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=28.88 E-value=1e+02 Score=23.87 Aligned_cols=51 Identities=27% Similarity=0.214 Sum_probs=35.6
Q ss_pred HHHhhhHH-HHHHhcCCeEEE--EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCC
Q psy10436 46 RLAYGIGL-AKLAASNSRVIA--LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 46 ~D~~G~~~-~k~~a~G~~vi~--VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~ 106 (208)
+|.++..+ ..+++.|+++.. +-.||. ++|.++++.+.+..+ ++-|.-|-|.
T Consensus 15 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~-----~~i~~~l~~~~~~~D-----~VittGG~g~ 68 (144)
T PF00994_consen 15 RDSNGPFLAALLEELGIEVIRYGIVPDDP-----DAIKEALRRALDRAD-----LVITTGGTGP 68 (144)
T ss_dssp EBHHHHHHHHHHHHTTEEEEEEEEEESSH-----HHHHHHHHHHHHTTS-----EEEEESSSSS
T ss_pred EEhHHHHHHHHHHHcCCeeeEEEEECCCH-----HHHHHHHHhhhccCC-----EEEEcCCcCc
Confidence 45666654 788999999875 567887 899999987754332 3445666554
No 166
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=28.59 E-value=1.4e+02 Score=28.76 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=34.1
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc-CCCCCEEEEEEeecC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ-VKGKPTALIAKTFKG 103 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~-~~~kP~vIi~~T~KG 103 (208)
.....++||.+...| ++. ++|.++++++.+ .+++|++|.+.+-+-
T Consensus 489 f~~iA~a~G~~~~~v--~~~-----~el~~al~~a~~~~~~~p~liev~i~~~ 534 (575)
T TIGR02720 489 FAKIAEGVGAVGFRV--NKI-----EQLPAVFEQAKAIKQGKPVLIDAKITGD 534 (575)
T ss_pred HHHHHHHCCCEEEEe--CCH-----HHHHHHHHHHHhhCCCCcEEEEEEeCCC
Confidence 455668888887776 333 789999998873 347899999999774
No 167
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=28.45 E-value=1.4e+02 Score=28.43 Aligned_cols=43 Identities=14% Similarity=0.039 Sum_probs=32.9
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecC
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKG 103 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG 103 (208)
..-.+++|.+...| .+. ++|.+||+++.+ .++|++|.+.|-+.
T Consensus 485 ~~la~a~G~~~~~v--~~~-----~el~~al~~a~~-~~~p~lIeV~id~~ 527 (548)
T PRK08978 485 VMLASAFGIPGQTI--TRK-----DQVEAALDTLLN-SEGPYLLHVSIDEL 527 (548)
T ss_pred HHHHHHCCCeEEEE--CCH-----HHHHHHHHHHHh-CCCCEEEEEEecCc
Confidence 34567788887776 334 889999999876 46899999999754
No 168
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=28.45 E-value=1.3e+02 Score=29.07 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=36.5
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcC--CCCCEEEEEEeecCCCCCccC
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQV--KGKPTALIAKTFKGKDFPNIE 110 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~--~~kP~vIi~~T~KG~G~~~~e 110 (208)
...-+++|.+.+.|+ +. ++|.++++++-+. +++|++|.+.|..-+|-|+.+
T Consensus 519 ~~lA~a~G~~~~~v~--~~-----~el~~al~~a~~~~~~~~p~lIev~~~~~~~~~~~~ 571 (588)
T PRK07525 519 AGIAEAMGAEGVVVD--TQ-----EELGPALKRAIDAQNEGKTTVIEIMCNQELGEPFRR 571 (588)
T ss_pred HHHHHHCCCeEEEEC--CH-----HHHHHHHHHHHhcCCCCCcEEEEEEeccccCCchHh
Confidence 345678888777764 44 7888888887654 468999999997666544443
No 169
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=27.77 E-value=1.6e+02 Score=22.87 Aligned_cols=64 Identities=9% Similarity=-0.005 Sum_probs=35.8
Q ss_pred CCCCCCcchHHHHHh---h----hH-HHHHHhcCCeEEEE--cCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeec
Q psy10436 35 PSYKKGELVATRLAY---G----IG-LAKLAASNSRVIAL--DGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFK 102 (208)
Q Consensus 35 ~~~kLdNLi~i~D~~---G----~~-~~k~~a~G~~vi~V--DGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~K 102 (208)
..+++..++-+|... + .. ....+..|.+++.+ ..+.+. ++-..+|..+-+...+|+++||+|=|
T Consensus 24 ~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~----~~~v~~f~~~~~~~~~pvL~HC~sG~ 97 (135)
T TIGR01244 24 AQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDIT----PDDVETFRAAIGAAEGPVLAYCRSGT 97 (135)
T ss_pred HHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCCC----HHHHHHHHHHHHhCCCCEEEEcCCCh
Confidence 446666666666311 1 11 12346679998875 344331 33334444443344689999998766
No 170
>PF08830 DUF1806: Protein of unknown function (DUF1806); InterPro: IPR014934 This entry consists of bacterial uncharacterised proteins. The structure of one of the proteins has been solved and it adopts a beta barrel-like structure. ; PDB: 1NJH_A.
Probab=27.70 E-value=95 Score=24.27 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEEeecC
Q psy10436 77 DKLKKAFHEASQVKGKPTALIAKTFKG 103 (208)
Q Consensus 77 ~~l~~Al~~ak~~~~kP~vIi~~T~KG 103 (208)
+.+.+.|++. .+||+-||+.|.-|
T Consensus 6 ~~VQ~~l~~~---~~~~vYlHlETTnG 29 (114)
T PF08830_consen 6 EEVQALLDSF---ANKDVYLHLETTNG 29 (114)
T ss_dssp HHHHHHHHHT---TTS-EEEEEEEEE-
T ss_pred HHHHHHHHHh---cCCceEEEEeecCc
Confidence 5566666655 46899999999998
No 171
>cd08797 Death_NFkB1_p105 Death domain of the Nuclear Factor-KappaB1 precursor protein p105. Death Domain (DD) of the Nuclear Factor-KappaB1 (NF-kB1) precursor protein p105. The NF-kB family of transcription factors play a central role in cardiovascular growth, stress response, and inflammation by controlling the expression of a network of different genes. There are five NF-kB proteins, all containing an N-terminal REL Homology Domain (RHD). NF-kB1 (or p50) is produced from the processing of the precursor protein p105, which contains ANK repeats and a C-terminal DD in addition to the RHD. It is regulated by the classical (or canonical) NF-kB pathway. In the cytosol, p50 forms an inactive complex with RelA (or p65) and the Inhibitor of NF-kB (IkB). Activation is triggered by the phosphorylation and degradation of IkB, resulting in the active DNA-binding p50-RelA dimer to migrate to the nucleus. The classical pathway regulates the majority of genes activated by NF-kB including those encod
Probab=27.62 E-value=42 Score=24.36 Aligned_cols=53 Identities=17% Similarity=0.084 Sum_probs=37.1
Q ss_pred CCCccCcCccccCCCCCCCCCcchHHHH----HhhhHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhh
Q psy10436 20 DAPKVDISNIKLSSPPSYKKGELVATRL----AYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEAS 87 (208)
Q Consensus 20 ~~~~~d~~~~~~~~A~~~kLdNLi~i~D----~~G~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak 87 (208)
|.|..+= .|...|...++++++.... ..+..++-||+ .|.++ +++.+|++..-
T Consensus 10 d~p~~~g--~Wr~LA~kL~l~~l~~~f~~~pSPt~~LLd~~E~--------~~G~l-----~~L~~aL~~mG 66 (76)
T cd08797 10 ESPDPDK--NWETLAQKLGLGILNNAFRLSPSPSKTLLDNYEV--------SGGTV-----RELLAALKRMG 66 (76)
T ss_pred CCCCCCC--CHHHHHHHHCchhHHHHHhCCCCcHHHHHHHHhc--------CCCCH-----HHHHHHHHHhC
Confidence 4553332 3999999999999877765 23445677776 34455 88999998763
No 172
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=27.20 E-value=1.5e+02 Score=28.39 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=33.4
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecC
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKG 103 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG 103 (208)
....+++|.+.+.|+. . ++|.++++++.+. ++|++|.+.|.+.
T Consensus 496 ~~~a~a~G~~~~~v~~--~-----~~l~~al~~a~~~-~~p~liev~~~~~ 538 (558)
T TIGR00118 496 VKLAEAYGIKGIRIEK--P-----EELDEKLKEALSS-NEPVLLDVVVDKP 538 (558)
T ss_pred HHHHHHCCCeEEEECC--H-----HHHHHHHHHHHhC-CCCEEEEEEeCCc
Confidence 4566888888777644 3 7899999988765 6899999999764
No 173
>PRK08611 pyruvate oxidase; Provisional
Probab=27.14 E-value=1.5e+02 Score=28.67 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=34.0
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCC
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGK 104 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~ 104 (208)
..--++||.+...| ++. ++|.+||+++.+. ++|++|.+.|-+..
T Consensus 490 ~~lA~a~G~~~~~v--~~~-----~eL~~al~~a~~~-~~p~lIeV~vd~~~ 533 (576)
T PRK08611 490 AKFAEACGGKGYRV--EKA-----EELDPAFEEALAQ-DKPVIIDVYVDPNA 533 (576)
T ss_pred HHHHHHCCCeEEEe--CCH-----HHHHHHHHHHHhC-CCCEEEEEEeCCcc
Confidence 45567888887776 444 8899999998755 68999999997543
No 174
>PRK12474 hypothetical protein; Provisional
Probab=26.42 E-value=2.3e+02 Score=26.96 Aligned_cols=62 Identities=10% Similarity=0.012 Sum_probs=37.2
Q ss_pred cccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 140 IAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 140 IaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
--|++.+.+|-|.|+.-.++-+ +-.+-..+.||.++........- ...+||..+..+++|.+
T Consensus 50 rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl~~A~~d~~Pvl~i~G~~~~~~~-~~~~~q~~d~~~~~~~v 126 (518)
T PRK12474 50 LFEGVVTGAADGYGRIAGKPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEHL-QYDAPLTSDIDGFARPV 126 (518)
T ss_pred cchHHHHHHHHHHHHHhCCCEEEEEccchhHhHhHHHHHHHhhcCCCEEEEeccCchhhc-CCCCccccCHHHhhhcc
Confidence 3599999999999976433433 11223357899888765443211 11245666666777653
No 175
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=26.23 E-value=1.2e+02 Score=29.50 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=35.8
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKG 103 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG 103 (208)
....-+++|.+...|+ +. ++|.++|+++... ++|++|.+.+-+-
T Consensus 490 f~klAea~G~~g~~v~--~~-----~el~~al~~al~~-~~p~lidv~id~~ 533 (550)
T COG0028 490 FVKLAEAYGAKGIRVE--TP-----EELEEALEEALAS-DGPVLIDVVVDPE 533 (550)
T ss_pred HHHHHHHcCCeeEEeC--CH-----HHHHHHHHHHHhC-CCCEEEEEEecCc
Confidence 3355689999999887 55 8899999999876 4799999999876
No 176
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=26.19 E-value=69 Score=29.88 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=42.9
Q ss_pred ccccHHHHHHHHHhCCCcccE--------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 141 AEQNLVGVAIGAACRNRTVPF--------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 141 aE~~mv~~AaGlA~~G~~~~~--------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
.|..++++|.|-|.+|.+ .+ +-.+++..+|+.++-..-+.. + -++||..-.|+-..|.-
T Consensus 57 ~E~aA~~~aiGAs~aGaR-a~TaTSg~Gl~lm~E~l~~aa~~~lPiVi~~~~R~~p-~-~~~~~~~q~D~~~~~d~ 129 (390)
T PRK08366 57 SEHSAMAACIGASAAGAR-AFTATSAQGLALMHEMLHWAAGARLPIVMVDVNRAMA-P-PWSVWDDQTDSLAQRDT 129 (390)
T ss_pred CHHHHHHHHHHHHhhCCC-eEeeeCcccHHHHhhHHHHHHhcCCCEEEEEeccCCC-C-CCCCcchhhHHHHHhhc
Confidence 799999999999999985 54 334577899987665444442 2 46898777787666643
No 177
>PLN02573 pyruvate decarboxylase
Probab=25.96 E-value=1.6e+02 Score=28.58 Aligned_cols=91 Identities=13% Similarity=-0.046 Sum_probs=55.2
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+.+.+++.|-+++. +-|+.. ..|.++|...+ +.
T Consensus 22 l~~~L~~~Gv~~vFGvpG~~~-----~~l~dal~~~~----~i------------------------------------- 55 (578)
T PLN02573 22 LARRLVEIGVTDVFSVPGDFN-----LTLLDHLIAEP----GL------------------------------------- 55 (578)
T ss_pred HHHHHHHcCCCEEEECCCCch-----HHHHHHHhhcC----Cc-------------------------------------
Confidence 45889999999775 777765 67777663210 01
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE--------------EEeccccCCCcEEEEecCCcc-ccCCCCCCCC
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRMGAISQTNVNFVGSHCGVS-IGEDGPSQMA 192 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir~~a~~~~~v~~v~~~~G~~-~g~dG~TH~~ 192 (208)
+ +=..--|++++.+|-|.|+.-....+ +-.+-..+.||+++....... .+.++..||.
T Consensus 56 ---~-~i~~rhE~~A~~mAdgyaR~tg~gv~~~t~GpG~~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~ 128 (578)
T PLN02573 56 ---N-LIGCCNELNAGYAADGYARARGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHT 128 (578)
T ss_pred ---e-EEEeCCHHHHHHHHHHHHHHhCCCeEEEecCccHHHHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeee
Confidence 1 12234599999999999976432222 222234579999887655442 2444445654
No 178
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=25.48 E-value=1e+02 Score=28.57 Aligned_cols=57 Identities=25% Similarity=0.332 Sum_probs=42.2
Q ss_pred ccccHHHHHHHHHhCCCcccE--------------EEeccccCCCcEE-EEecCCccccCCCCCCCChhHHHHhc
Q psy10436 141 AEQNLVGVAIGAACRNRTVPF--------------IRMGAISQTNVNF-VGSHCGVSIGEDGPSQMALEDIAMFR 200 (208)
Q Consensus 141 aE~~mv~~AaGlA~~G~~~~~--------------ir~~a~~~~~v~~-v~~~~G~~~g~dG~TH~~ieDia~~r 200 (208)
.|..++++|.|-|..|.+ .+ +-+++...+|+.+ ...++|-+.|. +|...-.|+-..|
T Consensus 55 ~E~aA~~~a~GAs~aG~R-a~taTSg~G~~lm~E~~~~a~~~e~P~V~~~~~R~GpstG~--p~~~~q~D~~~~~ 126 (375)
T PRK09627 55 DEISGISVALGASMSGVK-SMTASSGPGISLKAEQIGLGFIAEIPLVIVNVMRGGPSTGL--PTRVAQGDVNQAK 126 (375)
T ss_pred CHHHHHHHHHHHHhhCCC-EEeecCCchHHHHhhHHHHHHhccCCEEEEEeccCCCcCCC--CCccchHHHHHHh
Confidence 899999999999999985 54 3345677899766 56777775553 6666667776666
No 179
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=25.45 E-value=59 Score=26.48 Aligned_cols=67 Identities=7% Similarity=0.025 Sum_probs=34.3
Q ss_pred CCCCCCCCcchHHHHH--hhhHHHHHHhcCCeEEEEcCCCCCC----chHHHHHHHHHHhhcCCCCCEEEEEE
Q psy10436 33 SPPSYKKGELVATRLA--YGIGLAKLAASNSRVIALDGDTKNS----TFSDKLKKAFHEASQVKGKPTALIAK 99 (208)
Q Consensus 33 ~A~~~kLdNLi~i~D~--~G~~~~k~~a~G~~vi~VDGhd~~~----~~~~~l~~Al~~ak~~~~kP~vIi~~ 99 (208)
+..+++|-.++-++.. ..+....+++.|-+++.+.-..... ...+.+.+||+.+.+..+.|++|||+
T Consensus 27 fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~ 99 (164)
T PF03162_consen 27 FLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCN 99 (164)
T ss_dssp HHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-S
T ss_pred HHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeC
Confidence 3445566555555542 2234456689999988753221111 12378889998887777899999993
No 180
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.28 E-value=1.7e+02 Score=28.11 Aligned_cols=44 Identities=18% Similarity=0.119 Sum_probs=33.6
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCC
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGK 104 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~ 104 (208)
....+++|.+...| ++. ++|.++|+.+... ++|++|.+.|-+..
T Consensus 498 ~~~a~a~G~~~~~v--~~~-----~el~~al~~a~~~-~~p~lieV~v~~~~ 541 (563)
T PRK08527 498 VKLAESFGGIGFRV--TTK-----EEFDKALKEALES-DKVALIDVKIDRFE 541 (563)
T ss_pred HHHHHHCCCeEEEE--CCH-----HHHHHHHHHHHhC-CCCEEEEEEECCcc
Confidence 45668888887766 344 8899999988764 68999999997643
No 181
>PRK11269 glyoxylate carboligase; Provisional
Probab=25.22 E-value=1.7e+02 Score=28.27 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=31.7
Q ss_pred HHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc---CCCCCEEEEEEeecC
Q psy10436 54 AKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ---VKGKPTALIAKTFKG 103 (208)
Q Consensus 54 ~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~---~~~kP~vIi~~T~KG 103 (208)
.--++||.+...| ++. ++|.+||+++.+ ..++|++|.+.+-..
T Consensus 513 ~lA~a~G~~~~~v--~~~-----~eL~~al~~a~~~~~~~~gp~lieV~v~~~ 558 (591)
T PRK11269 513 KVAEGLGCKAIRV--FKP-----EDIAPALEQAKALMAEFRVPVVVEVILERV 558 (591)
T ss_pred HHHHHCCCeEEEE--CCH-----HHHHHHHHHHHhhcccCCCcEEEEEEeccc
Confidence 4456777776665 444 889999999874 356899999999643
No 182
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=24.86 E-value=1.7e+02 Score=28.37 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=32.4
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeec
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFK 102 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~K 102 (208)
...-++||.+...|+ +. ++|.++|+.+.+ .++|.+|.+.|..
T Consensus 515 ~~la~a~G~~~~~v~--~~-----~el~~al~~a~~-~~~p~liev~v~~ 556 (585)
T CHL00099 515 VKLAEAYGIKGLRIK--SR-----KDLKSSLKEALD-YDGPVLIDCQVIE 556 (585)
T ss_pred HHHHHHCCCeEEEeC--CH-----HHHHHHHHHHHh-CCCCEEEEEEECC
Confidence 345678888877663 34 889999999876 4689999999964
No 183
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=24.43 E-value=1.1e+02 Score=29.42 Aligned_cols=42 Identities=14% Similarity=0.013 Sum_probs=30.7
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcC---CCCCEEEEEEe
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQV---KGKPTALIAKT 100 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~---~~kP~vIi~~T 100 (208)
.....+++|.....|+ +. ++|.++++++.+. .++|++|.+.+
T Consensus 522 ~~~la~a~G~~~~~v~--~~-----~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 522 FAKIAEAFGGYGERVE--DP-----EELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred HHHHHHhCCCCceEeC--CH-----HHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 3456788999877775 44 7788888877543 24799999886
No 184
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=24.28 E-value=1.7e+02 Score=24.64 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=33.2
Q ss_pred HHHHhcCCeEEEEcC---------CCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCC
Q psy10436 54 AKLAASNSRVIALDG---------DTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 54 ~k~~a~G~~vi~VDG---------hd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~ 106 (208)
+.....+.+++.+|- +|. .....+.+.|+......+..++++.||.|+.+-
T Consensus 105 ~~~~~~~~~lvviDpl~~~~~~~~~d~--~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~~~ 164 (239)
T cd01125 105 EQLLIRRIDLVVIDPLVSFHGVSENDN--GAMDAVIKALRRIAAQTGAAILLVHHVRKGSAK 164 (239)
T ss_pred HHHHhcCCCEEEECChHHhCCCCcCCH--HHHHHHHHHHHHHHHHhCCEEEEEeccCccccc
Confidence 334457889988882 121 122456666666655667888999999987653
No 185
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=24.03 E-value=96 Score=29.42 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=35.8
Q ss_pred HHHHhcCCeEEEEcCCCCCCchH----HHHHHHHHHhhc---CCCCCEEEEEEeec
Q psy10436 54 AKLAASNSRVIALDGDTKNSTFS----DKLKKAFHEASQ---VKGKPTALIAKTFK 102 (208)
Q Consensus 54 ~k~~a~G~~vi~VDGhd~~~~~~----~~l~~Al~~ak~---~~~kP~vIi~~T~K 102 (208)
.-+.++|..++.+++-.+-|.+. ..|.+.|+.|.. .+++|+||+++=+-
T Consensus 167 aiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 167 LVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred HHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 45688899999888765543332 567888888875 46899999998643
No 186
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=24.00 E-value=60 Score=31.28 Aligned_cols=63 Identities=10% Similarity=0.032 Sum_probs=41.6
Q ss_pred cccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccc-cCCCCCCCChhHHHHhccC
Q psy10436 140 IAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSI-GEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 140 IaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~-g~dG~TH~~ieDia~~r~l 202 (208)
--|++++.+|.|.|+.-.++-+ +..+-..+.||.++........ +..-.++|.++..+++|.+
T Consensus 54 rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~ 132 (569)
T PRK09259 54 RHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPF 132 (569)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhh
Confidence 4599999999999987443443 3334456899998876544321 1112357878888888765
No 187
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=23.91 E-value=2.2e+02 Score=22.48 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=29.8
Q ss_pred HHHHhhhHH-HHHHhcCCeEEE--EcCCCCCCchHHHHHHHHHHhhc
Q psy10436 45 TRLAYGIGL-AKLAASNSRVIA--LDGDTKNSTFSDKLKKAFHEASQ 88 (208)
Q Consensus 45 i~D~~G~~~-~k~~a~G~~vi~--VDGhd~~~~~~~~l~~Al~~ak~ 88 (208)
++|.++..+ ..++.+|+++.. +-.||. ++|.++++++.+
T Consensus 17 i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~-----~~i~~~l~~~~~ 58 (152)
T cd00886 17 AEDRSGPALVELLEEAGHEVVAYEIVPDDK-----DEIREALIEWAD 58 (152)
T ss_pred CccchHHHHHHHHHHcCCeeeeEEEcCCCH-----HHHHHHHHHHHh
Confidence 356677554 779999999875 468887 889999987754
No 188
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=23.82 E-value=83 Score=28.77 Aligned_cols=71 Identities=17% Similarity=0.079 Sum_probs=47.5
Q ss_pred ccccccCCCcceeeccccccHHHHHHHHHhCCCcccE--------------EEeccccCCCcEEEEecCCccccCCCCCC
Q psy10436 125 ADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQ 190 (208)
Q Consensus 125 ~~f~~~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH 190 (208)
.++.+++...|++ .-.|..++++|.|-|..|.+ .+ +-.++...+|+.++....+- ...|.|+
T Consensus 41 a~~~~~~~~~~vq-~E~E~aA~~~a~GAs~aG~R-a~taTSg~Gl~lm~E~l~~a~~~e~P~v~v~v~R~~--p~~g~t~ 116 (352)
T PRK07119 41 SRRLPEVGGVFVQ-AESEVAAINMVYGAAATGKR-VMTSSSSPGISLKQEGISYLAGAELPCVIVNIMRGG--PGLGNIQ 116 (352)
T ss_pred HHHHHHhCCEEEe-eCcHHHHHHHHHHHHhhCCC-EEeecCcchHHHHHHHHHHHHHccCCEEEEEeccCC--CCCCCCc
Confidence 3344455567888 88999999999999999985 54 33445667996655444432 2234577
Q ss_pred CChhHHHHh
Q psy10436 191 MALEDIAMF 199 (208)
Q Consensus 191 ~~ieDia~~ 199 (208)
..-.|+-..
T Consensus 117 ~eq~D~~~~ 125 (352)
T PRK07119 117 PSQGDYFQA 125 (352)
T ss_pred chhHHHHHH
Confidence 766777554
No 189
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=23.56 E-value=2.3e+02 Score=24.07 Aligned_cols=44 Identities=11% Similarity=0.182 Sum_probs=32.9
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEE
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALI 97 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi 97 (208)
.+.+....|-+.+.|-|++- -+. +.+.+.++.+|+..+.|++++
T Consensus 16 ia~~v~~~gtDaI~VGGS~g-vt~-~~~~~~v~~ik~~~~lPvilf 59 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGSLG-IVE-SNLDQTVKKIKKITNLPVILF 59 (205)
T ss_pred HHHHHHhcCCCEEEEcCcCC-CCH-HHHHHHHHHHHhhcCCCEEEE
Confidence 45688899999999988851 122 667777777777677999997
No 190
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=23.23 E-value=2.4e+02 Score=27.21 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=33.4
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc--CCCCCEEEEEEeecCCC
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ--VKGKPTALIAKTFKGKD 105 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~--~~~kP~vIi~~T~KG~G 105 (208)
..--++||.+...| ++. ++|.++|+++.+ .+++|++|.+.+.+-.+
T Consensus 514 ~~lA~a~G~~g~~v--~~~-----~el~~al~~a~~~~~~~~p~lieV~v~~~~~ 561 (579)
T TIGR03457 514 AGIADAMGAKGVVV--DKP-----EDVGPALKKAIAAQAEGKTTVIEIVCTRELG 561 (579)
T ss_pred HHHHHHCCCeEEEE--CCH-----HHHHHHHHHHHhhCCCCCcEEEEEEeCCCcC
Confidence 34556777766655 444 889999998865 25789999999977654
No 191
>PLN02470 acetolactate synthase
Probab=23.08 E-value=2e+02 Score=27.85 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=33.3
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCC
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGK 104 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~ 104 (208)
..-.+++|.+...| ++. ++|.+||+++.+. ++|.+|.+.|-.-.
T Consensus 517 ~~iA~a~G~~~~~v--~~~-----~el~~al~~a~~~-~~p~lieV~i~~~~ 560 (585)
T PLN02470 517 LKFAEGCKIPAARV--TRK-----SDLREAIQKMLDT-PGPYLLDVIVPHQE 560 (585)
T ss_pred HHHHHHCCCeEEEE--CCH-----HHHHHHHHHHHhC-CCCEEEEEEeCCcc
Confidence 44567888877666 344 8899999998764 68999999996543
No 192
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=22.73 E-value=2.1e+02 Score=27.53 Aligned_cols=45 Identities=20% Similarity=0.094 Sum_probs=34.4
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGK 104 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~ 104 (208)
...--++||.+...|+ +. ++|.++|+++.+. ++|++|.+.+-+-.
T Consensus 489 ~~~lA~a~G~~~~~v~--~~-----~eL~~al~~a~~~-~~p~lIev~i~~~~ 533 (574)
T PRK09124 489 FAAIAEACGITGIRVE--KA-----SELDGALQRAFAH-DGPALVDVVTAKQE 533 (574)
T ss_pred HHHHHHHCCCeEEEeC--CH-----HHHHHHHHHHHhC-CCCEEEEEEecCcc
Confidence 3456688899887773 44 8899999998754 58999999986543
No 193
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=22.72 E-value=2.2e+02 Score=25.36 Aligned_cols=48 Identities=15% Similarity=-0.036 Sum_probs=36.4
Q ss_pred hHHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCC
Q psy10436 51 IGLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGK 104 (208)
Q Consensus 51 ~~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~ 104 (208)
+.....+++|..++. .+-.+. ++|.++++++.+.+ +|++|.+.+-+--
T Consensus 148 D~~~lA~a~G~~~va~~~~~~~-----~~l~~~i~~Al~~~-Gp~lIeV~~pC~~ 196 (280)
T PRK11869 148 NPIALAIALDASFVARTFSGDI-----EETKEILKEAIKHK-GLAIVDIFQPCVS 196 (280)
T ss_pred CHHHHHHHCCCCEEEEeCCCCH-----HHHHHHHHHHHhCC-CCEEEEEECCCCC
Confidence 345667889998776 334555 88999999998754 6999999987654
No 194
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=22.60 E-value=2.6e+02 Score=21.28 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=29.5
Q ss_pred HHHHhhhHH-HHHHhcCCeEEE--EcCCCCCCchHHHHHHHHHHhhc
Q psy10436 45 TRLAYGIGL-AKLAASNSRVIA--LDGDTKNSTFSDKLKKAFHEASQ 88 (208)
Q Consensus 45 i~D~~G~~~-~k~~a~G~~vi~--VDGhd~~~~~~~~l~~Al~~ak~ 88 (208)
++|.++..+ +.++.+|+++.. +-.||. +.|.++++++..
T Consensus 15 ~~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~-----~~I~~~l~~~~~ 56 (135)
T smart00852 15 IYDSNGPALAELLTELGIEVTRYVIVPDDK-----EAIKEALREALE 56 (135)
T ss_pred cccCcHHHHHHHHHHCCCeEEEEEEeCCCH-----HHHHHHHHHHHh
Confidence 457777654 789999998754 457887 889999987764
No 195
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=22.34 E-value=2.2e+02 Score=23.14 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=29.9
Q ss_pred HHHHhhhHH-HHHHhcCCeEEE--EcCCCCCCchHHHHHHHHHHhhc
Q psy10436 45 TRLAYGIGL-AKLAASNSRVIA--LDGDTKNSTFSDKLKKAFHEASQ 88 (208)
Q Consensus 45 i~D~~G~~~-~k~~a~G~~vi~--VDGhd~~~~~~~~l~~Al~~ak~ 88 (208)
++|.++..+ .++++.|+++.. +-+|+. +.|.++++.+.+
T Consensus 16 i~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~-----~~I~~~l~~~~~ 57 (170)
T cd00885 16 IVDTNAAFLAKELAELGIEVYRVTVVGDDE-----DRIAEALRRASE 57 (170)
T ss_pred EEEhHHHHHHHHHHHCCCEEEEEEEeCCCH-----HHHHHHHHHHHh
Confidence 346666554 789999999865 568887 889999988764
No 196
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=22.24 E-value=2.1e+02 Score=27.39 Aligned_cols=42 Identities=12% Similarity=0.024 Sum_probs=32.4
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeec
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFK 102 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~K 102 (208)
..--++||.+...|+ +. ++|..+++++.+ .++|++|.+.|-.
T Consensus 479 ~~lA~a~G~~~~~v~--~~-----~el~~al~~a~~-~~~p~lIeV~i~~ 520 (549)
T PRK06457 479 TKIAESIGFKGFRLE--EP-----KEAEEIIEEFLN-TKGPAVLDAIVDP 520 (549)
T ss_pred HHHHHHCCCeEEEeC--CH-----HHHHHHHHHHHh-CCCCEEEEEEeCc
Confidence 455678888877663 44 889999999875 4689999999964
No 197
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=22.17 E-value=2.3e+02 Score=25.23 Aligned_cols=47 Identities=15% Similarity=-0.051 Sum_probs=35.3
Q ss_pred HHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCC
Q psy10436 53 LAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKD 105 (208)
Q Consensus 53 ~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G 105 (208)
..-.+++|..++. ....+. +++.++++++.+. ++|++|.+.+-+--+
T Consensus 149 ~~iA~a~G~~~Va~~~~~~~-----~~l~~~l~~Al~~-~Gps~I~v~~pC~~~ 196 (279)
T PRK11866 149 IALALAAGATFVARGFSGDV-----KHLKEIIKEAIKH-KGFSFIDVLSPCVTF 196 (279)
T ss_pred HHHHHHCCCCEEEEEcCCCH-----HHHHHHHHHHHhC-CCCEEEEEeCCCCCC
Confidence 4567889998765 444555 8899999999875 469999999866544
No 198
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=21.37 E-value=1.3e+02 Score=28.92 Aligned_cols=42 Identities=19% Similarity=0.060 Sum_probs=31.4
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeec
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFK 102 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~K 102 (208)
..--+++|++...| ++. ++|.++|+++.+ .++|++|.+.|-+
T Consensus 509 ~~lA~a~G~~~~~V--~~~-----~eL~~al~~a~~-~~~p~lIev~id~ 550 (568)
T PRK07449 509 AHAAAMYGLEYHRP--ETW-----AELEEALADALP-TPGLTVIEVKTNR 550 (568)
T ss_pred HHHHHHcCCCccCC--CCH-----HHHHHHHHHHhc-CCCCEEEEEeCCh
Confidence 44557788876554 344 889999999875 4689999999854
No 199
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=21.27 E-value=2.3e+02 Score=27.46 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=31.4
Q ss_pred HHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeec
Q psy10436 54 AKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFK 102 (208)
Q Consensus 54 ~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~K 102 (208)
.-.+++|.+...| ++. ++|.+||+++.+ .++|++|-+.|..
T Consensus 504 ~la~a~G~~~~~v--~~~-----~el~~al~~a~~-~~~p~lIeV~i~~ 544 (586)
T PRK06276 504 KLAESYGVKADRV--EKP-----DEIKEALKEAIK-SGEPYLLDIIIDP 544 (586)
T ss_pred HHHHHCCCeEEEE--CCH-----HHHHHHHHHHHh-CCCCEEEEEEecc
Confidence 4557788777665 444 889999999875 4689999999964
No 200
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.12 E-value=2.5e+02 Score=26.99 Aligned_cols=44 Identities=16% Similarity=0.058 Sum_probs=32.1
Q ss_pred HHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCC
Q psy10436 54 AKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGK 104 (208)
Q Consensus 54 ~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~ 104 (208)
...++||-+...| .+. ++|.++|+++.+.+++|++|-+.+.+..
T Consensus 508 ~lA~a~G~~~~~v--~~~-----~el~~al~~a~~~~~~p~lIev~i~~~~ 551 (574)
T PRK06466 508 KLAEAYGHVGIRI--TDL-----KDLKPKLEEAFAMKDRLVFIDIYVDRSE 551 (574)
T ss_pred HHHHHCCCeEEEE--CCH-----HHHHHHHHHHHhcCCCcEEEEEEeCCcc
Confidence 3457778776665 334 8899999988765478999999997643
No 201
>PLN00205 ribisomal protein L13 family protein; Provisional
Probab=20.99 E-value=86 Score=26.68 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=42.7
Q ss_pred HHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCC----------EEEEEEe--ecCCCCCccCCCcccc-CCcCC
Q psy10436 55 KLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKP----------TALIAKT--FKGKDFPNIEDKEEWH-GKPLG 121 (208)
Q Consensus 55 k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP----------~vIi~~T--~KG~G~~~~e~~~~~H-~~~~~ 121 (208)
.+++-.|.++...++.+ ..|.+-+...-..++|| .||++++ +.=-|-........|| |.+-+
T Consensus 11 ~~~~r~W~VIDA~~~iL-----GRLAS~IAk~L~GKhKP~ytP~~D~GD~VVVINAekI~lTG~K~~~K~Y~~htgypGg 85 (191)
T PLN00205 11 NLEGLRWRVFDAKGQVL-----GRLASQISTVLQGKDKPTYAPNRDDGDICIVLNAKDISVTGRKLTDKFYRWHTGYIGH 85 (191)
T ss_pred ccCCCcEEEEeCCCCch-----HHHHHHHHHHHhccCCCCcCCCcCCCCEEEEEeccEEEEeCChhhcceEEEecCCCCC
Confidence 35666788877777776 66776666555555666 2444444 3333333222234455 23322
Q ss_pred ---CCcccccccCCCccee
Q psy10436 122 ---SSSADVLKAYPDRYIE 137 (208)
Q Consensus 122 ---~~l~~f~~~~P~r~~~ 137 (208)
..+.++..+.|++.|.
T Consensus 86 lk~~~~~~~~~r~P~~Il~ 104 (191)
T PLN00205 86 LKERSLKDQMAKDPTEVIR 104 (191)
T ss_pred cccccHHHHhccCHHHHHH
Confidence 2234566677777765
No 202
>PRK05858 hypothetical protein; Provisional
Probab=20.96 E-value=3.1e+02 Score=26.16 Aligned_cols=43 Identities=16% Similarity=0.003 Sum_probs=32.0
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecC
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKG 103 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG 103 (208)
..--++||-+...|+- . ++|.++|+++.+ .++|++|-+.|.+.
T Consensus 490 ~~lA~a~G~~~~~v~~--~-----~eL~~al~~a~~-~~~p~lIev~~~~~ 532 (542)
T PRK05858 490 DEVVRALGGHGELVTV--P-----AELGPALERAFA-SGVPYLVNVLTDPS 532 (542)
T ss_pred HHHHHHCCCeEEEeCC--H-----HHHHHHHHHHHh-CCCcEEEEEEECCC
Confidence 3455778877766642 3 788999988865 46899999999755
No 203
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=20.77 E-value=2.4e+02 Score=27.44 Aligned_cols=43 Identities=23% Similarity=0.209 Sum_probs=33.1
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecC
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKG 103 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG 103 (208)
..--+++|.....|. +. ++|..+|+++.+ .++|++|-+.|-.-
T Consensus 506 ~~lA~a~G~~~~~v~--~~-----~eL~~al~~a~~-~~~p~lIeV~~~~~ 548 (597)
T PRK08273 506 ARFAELLGLKGIRVD--DP-----EQLGAAWDEALA-ADRPVVLEVKTDPN 548 (597)
T ss_pred HHHHHHCCCEEEEEC--CH-----HHHHHHHHHHHh-CCCCEEEEEEeCCC
Confidence 455678888887764 33 889999999876 46899999999653
No 204
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=20.57 E-value=2.4e+02 Score=27.44 Aligned_cols=43 Identities=12% Similarity=0.143 Sum_probs=32.0
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc---CCCCCEEEEEEeec
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ---VKGKPTALIAKTFK 102 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~---~~~kP~vIi~~T~K 102 (208)
..-.++||.+...| ++. ++|.+||+++.+ ..++|++|-+.+-.
T Consensus 511 ~~lA~a~G~~~~~V--~~~-----~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 511 VKVAEGLGCKAIRV--FKP-----EEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred HHHHHHCCCEEEEE--CCH-----HHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 44567788777766 334 789999998864 34789999999954
No 205
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=20.47 E-value=2.4e+02 Score=27.55 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=33.1
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCC
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGK 104 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~ 104 (208)
..--+++|.+.+.|+ +. ++|.+||+++.+. ++|++|.+.+.+..
T Consensus 519 ~~~A~a~G~~g~~V~--~~-----~el~~al~~a~~~-~~p~lIeV~i~~~~ 562 (616)
T PRK07418 519 VKLAEAFGVKGMVIS--ER-----DQLKDAIAEALAH-DGPVLIDVHVRRDE 562 (616)
T ss_pred HHHHHHCCCeEEEeC--CH-----HHHHHHHHHHHhC-CCCEEEEEEecCcc
Confidence 345677887777663 44 8899999998764 58999999997533
No 206
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=20.22 E-value=2.7e+02 Score=26.74 Aligned_cols=45 Identities=24% Similarity=0.208 Sum_probs=34.0
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCC
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKD 105 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G 105 (208)
...-++||.+.+.|+ .. ++|.++|+++.. .++|++|-+.+.+..+
T Consensus 506 ~~lA~a~G~~~~~v~--~~-----~el~~al~~a~~-~~~p~lIev~id~~~~ 550 (569)
T PRK09259 506 DKMMEAFGGVGYNVT--TP-----DELRHALTEAIA-SGKPTLINVVIDPAAG 550 (569)
T ss_pred HHHHHHCCCeEEEEC--CH-----HHHHHHHHHHHh-CCCCEEEEEEECCCCC
Confidence 455688888877663 33 789999998865 4689999999976544
No 207
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=20.01 E-value=1.9e+02 Score=25.57 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=33.4
Q ss_pred HHHhhh-HHHHHHhcCCeEEE--EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEE
Q psy10436 46 RLAYGI-GLAKLAASNSRVIA--LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIA 98 (208)
Q Consensus 46 ~D~~G~-~~~k~~a~G~~vi~--VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~ 98 (208)
+|.+.. ..++|.+.|.++.. +-||+. ++|.++++.+.+. +-+|++
T Consensus 19 vdtNa~~la~~L~~~G~~v~~~~~VgD~~-----~~I~~~l~~a~~r---~D~vI~ 66 (255)
T COG1058 19 VDTNAAFLADELTELGVDLARITTVGDNP-----DRIVEALREASER---ADVVIT 66 (255)
T ss_pred ecchHHHHHHHHHhcCceEEEEEecCCCH-----HHHHHHHHHHHhC---CCEEEE
Confidence 344443 45899999999976 579998 9999999998764 444443
Done!