Query psy10436
Match_columns 208
No_of_seqs 212 out of 1620
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 18:08:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rim_A Transketolase, TK; TPP, 100.0 5E-40 1.7E-44 318.5 5.2 177 27-208 185-521 (700)
2 3l84_A Transketolase; TKT, str 100.0 2.1E-39 7.1E-44 311.2 4.5 176 27-208 160-471 (632)
3 3m49_A Transketolase; alpha-be 100.0 1.6E-39 5.5E-44 314.6 3.1 177 27-208 189-516 (690)
4 3kom_A Transketolase; rossmann 100.0 2.1E-38 7.2E-43 305.6 6.9 177 27-208 165-492 (663)
5 3uk1_A Transketolase; structur 100.0 5.7E-38 1.9E-42 304.6 4.7 176 27-208 204-537 (711)
6 3mos_A Transketolase, TK; thia 100.0 1.2E-36 4E-41 291.2 5.0 174 27-208 161-444 (616)
7 1itz_A Transketolase; calvin c 100.0 2.5E-36 8.5E-41 291.5 7.0 177 27-208 176-504 (675)
8 2r8o_A Transketolase 1, TK 1; 100.0 4.6E-36 1.6E-40 289.3 8.4 177 27-208 163-491 (669)
9 1r9j_A Transketolase; domains, 100.0 3.1E-36 1E-40 290.8 4.8 175 28-208 166-491 (673)
10 1gpu_A Transketolase; transfer 100.0 1E-35 3.6E-40 287.3 6.9 176 27-208 165-499 (680)
11 2e6k_A Transketolase; structur 100.0 2.3E-35 7.8E-40 283.7 7.0 175 27-208 167-486 (651)
12 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 4.4E-32 1.5E-36 259.6 8.4 148 54-208 246-452 (629)
13 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 1.2E-31 4.2E-36 256.1 10.4 149 53-208 240-449 (621)
14 3ahc_A Phosphoketolase, xylulo 100.0 1.5E-29 5.1E-34 248.4 11.4 173 29-208 213-596 (845)
15 2qtc_A Pyruvate dehydrogenase 100.0 1.2E-29 4.1E-34 251.1 6.3 177 27-208 238-658 (886)
16 1ik6_A Pyruvate dehydrogenase; 99.8 1.4E-20 4.7E-25 170.3 2.3 82 124-208 88-193 (369)
17 1qs0_B 2-oxoisovalerate dehydr 99.8 1.9E-19 6.5E-24 160.2 5.5 82 124-208 42-147 (338)
18 2bfd_B 2-oxoisovalerate dehydr 99.8 1.7E-19 5.9E-24 161.2 3.5 119 42-208 20-163 (342)
19 2ozl_B PDHE1-B, pyruvate dehyd 99.7 1.7E-18 5.9E-23 154.9 6.5 119 42-208 14-157 (341)
20 2yic_A 2-oxoglutarate decarbox 99.7 2.7E-18 9.1E-23 169.8 7.4 78 128-208 578-681 (868)
21 2jgd_A 2-oxoglutarate dehydrog 99.7 2E-18 6.7E-23 171.8 6.4 81 125-208 643-749 (933)
22 1w85_B Pyruvate dehydrogenase 99.7 1.1E-17 3.8E-22 148.2 8.0 82 124-208 40-145 (324)
23 2xt6_A 2-oxoglutarate decarbox 99.7 9.4E-18 3.2E-22 169.5 6.5 78 128-208 823-926 (1113)
24 1umd_B E1-beta, 2-OXO acid deh 99.7 1.1E-17 3.8E-22 148.0 5.8 82 124-208 41-146 (324)
25 1umd_A E1-alpha, 2-OXO acid de 97.9 2.1E-06 7.2E-11 77.1 0.1 81 28-114 184-281 (367)
26 1qs0_A 2-oxoisovalerate dehydr 97.6 0.00012 4.2E-09 66.7 7.3 80 28-113 221-318 (407)
27 1w85_A Pyruvate dehydrogenase 97.6 9.8E-06 3.3E-10 73.0 -0.3 77 28-110 182-276 (368)
28 2bfd_A 2-oxoisovalerate dehydr 97.6 6.2E-06 2.1E-10 75.1 -1.6 76 25-106 197-291 (400)
29 2ozl_A PDHE1-A type I, pyruvat 95.4 0.024 8.2E-07 50.8 6.3 75 28-109 180-270 (365)
30 4feg_A Pyruvate oxidase; carba 92.9 0.21 7.2E-06 46.9 7.2 60 52-118 502-562 (603)
31 1ybh_A Acetolactate synthase, 92.0 0.4 1.4E-05 44.8 7.8 48 52-107 516-563 (590)
32 1yd7_A 2-keto acid:ferredoxin 89.4 0.22 7.7E-06 44.6 3.4 51 130-181 62-125 (395)
33 1ozh_A ALS, acetolactate synth 88.3 0.26 8.9E-06 45.8 3.1 46 52-105 501-546 (566)
34 1t9b_A Acetolactate synthase, 86.6 1.2 4.3E-05 42.5 6.8 48 52-107 595-642 (677)
35 1q6z_A BFD, BFDC, benzoylforma 85.1 1.2 4E-05 40.8 5.6 44 52-103 483-526 (528)
36 2pan_A Glyoxylate carboligase; 84.1 0.92 3.1E-05 42.5 4.5 48 52-106 534-584 (616)
37 2iht_A Carboxyethylarginine sy 84.0 1.3 4.3E-05 41.1 5.4 43 52-102 519-561 (573)
38 2pgn_A Cyclohexane-1,2-dione h 82.3 1 3.5E-05 42.0 4.1 73 29-109 459-554 (589)
39 2uz1_A Benzaldehyde lyase; thi 81.4 2.1 7.3E-05 39.5 5.8 43 52-102 504-546 (563)
40 1v5e_A Pyruvate oxidase; oxido 80.4 2 6.7E-05 40.1 5.2 47 51-104 493-541 (590)
41 2vbi_A Pyruvate decarboxylase; 78.8 2.1 7.1E-05 39.6 4.8 71 29-106 444-537 (566)
42 2wvg_A PDC, pyruvate decarboxy 77.5 2.6 8.7E-05 39.0 5.0 48 52-106 489-545 (568)
43 3lq1_A 2-succinyl-5-enolpyruvy 76.2 2.1 7E-05 39.8 4.0 57 52-116 518-574 (578)
44 3eya_A Pyruvate dehydrogenase 74.9 3.8 0.00013 37.7 5.4 47 52-106 487-533 (549)
45 2vk8_A Pyruvate decarboxylase 74.7 1.6 5.6E-05 40.2 2.9 68 30-104 453-544 (563)
46 2c31_A Oxalyl-COA decarboxylas 73.9 4.5 0.00015 37.3 5.6 48 51-106 504-551 (568)
47 2vbf_A Branched-chain alpha-ke 69.3 4 0.00014 37.7 4.2 68 30-104 461-553 (570)
48 2pgn_A Cyclohexane-1,2-dione h 66.8 11 0.00037 35.0 6.6 102 52-204 10-128 (589)
49 1ovm_A Indole-3-pyruvate decar 65.7 4.6 0.00016 37.0 3.8 43 53-103 487-533 (552)
50 2uz1_A Benzaldehyde lyase; thi 64.9 9.5 0.00033 35.0 5.8 66 139-205 47-128 (563)
51 2q28_A Oxalyl-COA decarboxylas 64.7 5 0.00017 36.9 3.9 47 52-106 502-548 (564)
52 2nxw_A Phenyl-3-pyruvate decar 63.7 8.6 0.00029 35.5 5.3 45 52-104 499-544 (565)
53 2pan_A Glyoxylate carboligase; 62.6 15 0.00052 34.1 6.8 102 52-204 33-151 (616)
54 1v5e_A Pyruvate oxidase; oxido 62.1 10 0.00036 35.1 5.5 67 138-205 48-129 (590)
55 3hww_A 2-succinyl-5-enolpyruvy 60.5 11 0.00038 34.7 5.3 100 52-203 14-130 (556)
56 1ybh_A Acetolactate synthase, 59.3 15 0.0005 34.0 6.0 65 139-204 56-135 (590)
57 2nxw_A Phenyl-3-pyruvate decar 58.7 13 0.00045 34.2 5.5 102 52-203 27-149 (565)
58 3eya_A Pyruvate dehydrogenase 53.7 21 0.00073 32.6 6.1 102 52-204 9-126 (549)
59 3lq1_A 2-succinyl-5-enolpyruvy 53.3 16 0.00055 33.7 5.2 99 52-202 17-132 (578)
60 1ozh_A ALS, acetolactate synth 53.1 15 0.00052 33.8 5.0 66 139-205 54-134 (566)
61 2x7j_A 2-succinyl-5-enolpyruvy 53.0 4 0.00014 38.0 1.0 46 52-105 538-583 (604)
62 2vbi_A Pyruvate decarboxylase; 52.7 29 0.001 31.7 6.9 65 139-203 47-132 (566)
63 3iwt_A 178AA long hypothetical 52.2 26 0.0009 27.1 5.6 53 46-106 38-93 (178)
64 1t9b_A Acetolactate synthase, 47.7 22 0.00074 33.8 5.2 65 139-204 126-205 (677)
65 3hww_A 2-succinyl-5-enolpyruvy 46.4 15 0.00051 33.8 3.7 44 52-103 497-540 (556)
66 4feg_A Pyruvate oxidase; carba 42.7 27 0.00093 32.4 4.9 102 52-203 17-134 (603)
67 2x7j_A 2-succinyl-5-enolpyruvy 42.7 29 0.001 32.1 5.2 101 52-203 37-153 (604)
68 1mkz_A Molybdenum cofactor bio 40.2 61 0.0021 25.1 6.0 55 44-106 24-81 (172)
69 2wvg_A PDC, pyruvate decarboxy 40.0 83 0.0028 28.7 7.8 65 139-204 47-133 (568)
70 1y5e_A Molybdenum cofactor bio 38.6 60 0.0021 25.0 5.7 55 44-106 27-84 (169)
71 2iht_A Carboxyethylarginine sy 38.4 16 0.00054 33.7 2.6 67 139-205 54-135 (573)
72 2c31_A Oxalyl-COA decarboxylas 36.8 26 0.0009 32.1 3.8 65 139-204 53-134 (568)
73 2pjk_A 178AA long hypothetical 35.7 67 0.0023 25.2 5.6 54 45-106 37-93 (178)
74 2q28_A Oxalyl-COA decarboxylas 35.5 30 0.001 31.6 4.0 65 139-204 51-132 (564)
75 3mos_A Transketolase, TK; thia 30.2 51 0.0018 31.0 4.7 49 33-81 303-351 (616)
76 3kbq_A Protein TA0487; structu 28.4 77 0.0026 25.0 4.8 52 45-106 20-74 (172)
77 2c42_A Pyruvate-ferredoxin oxi 27.9 47 0.0016 34.1 4.2 49 133-181 54-115 (1231)
78 1njh_A Protein YOJF; structura 27.1 69 0.0024 24.1 4.0 24 77-103 10-33 (119)
79 2vbf_A Branched-chain alpha-ke 26.1 54 0.0018 30.0 3.9 101 52-203 31-154 (570)
80 1q6z_A BFD, BFDC, benzoylforma 25.0 22 0.00074 32.3 1.0 66 138-204 43-124 (528)
81 2is8_A Molybdopterin biosynthe 24.9 77 0.0026 24.2 4.1 53 46-106 19-74 (164)
82 3gxh_A Putative phosphatase (D 23.5 1.7E+02 0.0057 21.8 5.8 49 53-102 60-108 (157)
83 1ovm_A Indole-3-pyruvate decar 22.1 74 0.0025 28.8 4.0 44 137-181 47-105 (552)
84 2g2c_A Putative molybdenum cof 22.0 38 0.0013 26.2 1.7 51 46-106 23-81 (167)
85 2j32_A Caspase-3; Pro-caspase3 20.9 2.8E+02 0.0096 22.6 7.1 50 52-106 46-95 (250)
86 3ek3_A Nitroreductase; YP_2117 20.7 70 0.0024 24.3 3.1 24 132-155 107-130 (190)
No 1
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=5e-40 Score=318.51 Aligned_cols=177 Identities=21% Similarity=0.297 Sum_probs=155.4
Q ss_pred CccccCCCCCCCCCcchHHHHHhh-------------hHHHHHHhcCCeEEEE-cCCCCCCchHHHHHHHHHHhhcCCCC
Q psy10436 27 SNIKLSSPPSYKKGELVATRLAYG-------------IGLAKLAASNSRVIAL-DGDTKNSTFSDKLKKAFHEASQVKGK 92 (208)
Q Consensus 27 ~~~~~~~A~~~kLdNLi~i~D~~G-------------~~~~k~~a~G~~vi~V-DGhd~~~~~~~~l~~Al~~ak~~~~k 92 (208)
.+|++++|++++|+||++++|.++ +...+|+++||+|+.| ||||+ ++|.+|+++++...+|
T Consensus 185 ~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~G~~~~~V~DG~D~-----~al~~Al~~A~~~~~~ 259 (700)
T 3rim_A 185 TSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIALCEDTAARYRAYGWHVQEVEGGENV-----VGIEEAIANAQAVTDR 259 (700)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHHTCEEEEEECTTCH-----HHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCcccccchhhccchhHHHHHHHcCCeEEEECCCCCH-----HHHHHHHHHHHHcCCC
Confidence 356778999999999999997332 3568999999999999 99998 9999999999987789
Q ss_pred CEEEEEEeecCCCCCccCCCccccCCcCC---------------------------------------------------
Q psy10436 93 PTALIAKTFKGKDFPNIEDKEEWHGKPLG--------------------------------------------------- 121 (208)
Q Consensus 93 P~vIi~~T~KG~G~~~~e~~~~~H~~~~~--------------------------------------------------- 121 (208)
|++|+++|+||+|++++|++.+|||.+++
T Consensus 260 P~lI~~~T~kG~G~~~~e~~~~~Hg~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~~~~~g~~~~~~w~~~~~~~~ 339 (700)
T 3rim_A 260 PSFIALRTVIGYPAPNLMDTGKAHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARGKQAHERWQLEFDAWA 339 (700)
T ss_dssp CEEEEEECCTTTTCTTTTTSHHHHHSCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEeeecCCccCCCccccCCCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999998889985420
Q ss_pred ---------------------------------C---------------------------------C-----ccccccc
Q psy10436 122 ---------------------------------S---------------------------------S-----SADVLKA 130 (208)
Q Consensus 122 ---------------------------------~---------------------------------~-----l~~f~~~ 130 (208)
. + +..|+++
T Consensus 340 ~~~p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~ 419 (700)
T 3rim_A 340 RREPERKALLDRLLAQKLPDGWDADLPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPP 419 (700)
T ss_dssp HHCHHHHHHHHHHHTTCCCTTTTSSCCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCG
T ss_pred hhChHHHHHHHHHhccCCCcchhhhcccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhccc
Confidence 0 0 1356777
Q ss_pred C------C----CcceeeccccccHHHHHHHHHhC-CCcccE-------------EEeccccCCCcEEEEecCCccccCC
Q psy10436 131 Y------P----DRYIECFIAEQNLVGVAIGAACR-NRTVPF-------------IRMGAISQTNVNFVGSHCGVSIGED 186 (208)
Q Consensus 131 ~------P----~r~~~~GIaE~~mv~~AaGlA~~-G~~~~~-------------ir~~a~~~~~v~~v~~~~G~~~g~d 186 (208)
| | +||||+|||||+|+++|+|||++ |++|++ ||+.|++++||+++++|+|+++|+|
T Consensus 420 ~~~~~~~p~~~~~R~id~GIaE~~mv~~A~GlA~~gG~~Pv~~tF~~F~d~~~~~ir~~al~~lpvv~v~thdg~gvG~d 499 (700)
T 3rim_A 420 SISTKEYTAHWYGRTLHFGVREHAMGAILSGIVLHGPTRAYGGTFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIGLGED 499 (700)
T ss_dssp GGCCSSCCEETTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGGGCTT
T ss_pred ccccccCCcccCCceeecCccHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCC
Confidence 8 9 59999999999999999999999 775432 7788999999999999999999999
Q ss_pred CCCCCChhHHHHhccCCCceeC
Q psy10436 187 GPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 187 G~TH~~ieDia~~r~lPn~~V~ 208 (208)
|+|||++||+++||+||||+|+
T Consensus 500 G~THq~ied~a~lr~iPnl~V~ 521 (700)
T 3rim_A 500 GPTHQPIEHLSALRAIPRLSVV 521 (700)
T ss_dssp CTTTSCSSHHHHHHTSTTCEEE
T ss_pred CCccCChhHHHHHhcCCCCEEE
Confidence 9999999999999999999985
No 2
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=2.1e-39 Score=311.24 Aligned_cols=176 Identities=23% Similarity=0.336 Sum_probs=153.3
Q ss_pred CccccCCCCCCCCCcchHHHHHhh-------------hHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCC
Q psy10436 27 SNIKLSSPPSYKKGELVATRLAYG-------------IGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKP 93 (208)
Q Consensus 27 ~~~~~~~A~~~kLdNLi~i~D~~G-------------~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP 93 (208)
.+|++++|++++|+|+++++|.++ +...+|++|||+++.|||||+ ++|.+||+++++ .++|
T Consensus 160 ~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~vdGhd~-----~~l~~al~~A~~-~~~P 233 (632)
T 3l84_A 160 SYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDY-----EEINKALEQAKK-STKP 233 (632)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHTTCEEEEEETTCH-----HHHHHHHHHHHT-CSSC
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCcccccchhhhcChhHHHHHHHcCCeEEEEeeCCH-----HHHHHHHHHHHh-CCCC
Confidence 456677999999999999987332 356899999999999999998 999999999987 6799
Q ss_pred EEEEEEeecCCCCCccCCCccccCCcCC----------------------------------------------------
Q psy10436 94 TALIAKTFKGKDFPNIEDKEEWHGKPLG---------------------------------------------------- 121 (208)
Q Consensus 94 ~vIi~~T~KG~G~~~~e~~~~~H~~~~~---------------------------------------------------- 121 (208)
++|+++|+||+|++++|++.+|||.+++
T Consensus 234 ~lI~v~T~kG~G~~~~e~~~~~Hg~~l~~e~~~~~~~~l~~~~~~~f~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~ 313 (632)
T 3l84_A 234 CLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAK 313 (632)
T ss_dssp EEEEEECCTTTTCGGGTTCGGGSSSCCCHHHHHHHHHHHTCCTTCCSCCCHHHHHHHHTHHHHHHHHHHHHHHHHHHSSC
T ss_pred EEEEEeeEeeecCCCCCCcccccCCCCCHHHHHHHHHHhCCCCCCCccCChHHHHHHHHHHhhcchhHHHHHHHhhcccC
Confidence 9999999999999999999999998510
Q ss_pred ----------------------CC--------------------------------ccccc--ccC-CCcceeecccccc
Q psy10436 122 ----------------------SS--------------------------------SADVL--KAY-PDRYIECFIAEQN 144 (208)
Q Consensus 122 ----------------------~~--------------------------------l~~f~--~~~-P~r~~~~GIaE~~ 144 (208)
.. +..|+ ++| |+||||+|||||+
T Consensus 314 p~~~~~~~p~~~~~~~~~~~~~~~~a~r~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~~~~~~~f~p~R~~d~GIaE~~ 393 (632)
T 3l84_A 314 KELLERLLNPDFNKIAYPDFKGKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREHA 393 (632)
T ss_dssp HHHHHHHHSCCSTTCCCCCCTTCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBTTTSSEEECCSCHHH
T ss_pred chhhhhhCccchhhhcchhccccchHHHHHHHHHHHHHHhhCCCEEEEecccCCccCcchhcccccCCCCeEEeCccHHH
Confidence 00 01122 468 9999999999999
Q ss_pred HHHHHHHHHhC-CCcccE-------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 145 LVGVAIGAACR-NRTVPF-------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 145 mv~~AaGlA~~-G~~~~~-------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
|+++|+|||++ |++|++ ||+.|++++||+++++|+|+++|+||+|||++||+++||++|||+|+
T Consensus 394 ~v~~a~GlA~~gG~~P~~~~f~~F~~~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~ 471 (632)
T 3l84_A 394 MAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTF 471 (632)
T ss_dssp HHHHHHHHHHHSSCEEEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEE
T ss_pred HHHHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEE
Confidence 99999999999 775442 78889999999999999999999999999999999999999999985
No 3
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=1.6e-39 Score=314.59 Aligned_cols=177 Identities=28% Similarity=0.352 Sum_probs=153.2
Q ss_pred CccccCCCCCCCCCcchHHHHHhh-------------hHHHHHHhcCCeEEEE-cCCCCCCchHHHHHHHHHHhhcCCCC
Q psy10436 27 SNIKLSSPPSYKKGELVATRLAYG-------------IGLAKLAASNSRVIAL-DGDTKNSTFSDKLKKAFHEASQVKGK 92 (208)
Q Consensus 27 ~~~~~~~A~~~kLdNLi~i~D~~G-------------~~~~k~~a~G~~vi~V-DGhd~~~~~~~~l~~Al~~ak~~~~k 92 (208)
.+|++++|++++|+|+++++|.++ +...+|+++||+++.| ||||+ ++|.+||+++++..+|
T Consensus 189 ~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~v~DG~d~-----~~l~~Al~~a~~~~~~ 263 (690)
T 3m49_A 189 SAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSFSESVEDRYKAYGWQVIRVEDGNDI-----EAIAKAIEEAKADEKR 263 (690)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSBCSSSBGGGTCCCCHHHHHHHHTCEEEEESCTTCH-----HHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHhCCCeEEEEEECCCeecccchhhccchhHHHHHHHcCCcEEEEecCCCH-----HHHHHHHHHHHhcCCC
Confidence 456777999999999999987332 3568999999999998 99998 9999999999986789
Q ss_pred CEEEEEEeecCCCCCccCCCccccCCcCCC--------------------------------------------------
Q psy10436 93 PTALIAKTFKGKDFPNIEDKEEWHGKPLGS-------------------------------------------------- 122 (208)
Q Consensus 93 P~vIi~~T~KG~G~~~~e~~~~~H~~~~~~-------------------------------------------------- 122 (208)
|++|+++|+||+|++++|++.+|||.+++.
T Consensus 264 P~lI~v~T~kG~G~~~~~~~~~~Hg~~~~~e~~~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 343 (690)
T 3m49_A 264 PTLIEVRTTIGFGSPNKSGKSASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEY 343 (690)
T ss_dssp CEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeecccccCcccCcccccCCCCCHHHHHHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 999999999999999999999999976310
Q ss_pred ------------------------------------------C--c----------------------------cccccc
Q psy10436 123 ------------------------------------------S--S----------------------------ADVLKA 130 (208)
Q Consensus 123 ------------------------------------------~--l----------------------------~~f~~~ 130 (208)
+ | ..|+++
T Consensus 344 ~~~~~~~a~~~~~~~~~~lp~~~~~~~~~~~~~~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~ 423 (690)
T 3m49_A 344 AQAYPELANELQAAMNGLLPEGWEQNLPTYELGSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRD 423 (690)
T ss_dssp HHHSHHHHHHHHHHHTTCCCTTGGGGCCCCCTTCEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTT
T ss_pred HHhCHHHHHHHHHHhcccCchhhhhhccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhh
Confidence 0 0 022323
Q ss_pred -CCCcceeeccccccHHHHHHHHHhC-CCcccE-------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 131 -YPDRYIECFIAEQNLVGVAIGAACR-NRTVPF-------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 131 -~P~r~~~~GIaE~~mv~~AaGlA~~-G~~~~~-------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
+|+||||+|||||+|+++|+|||++ |++|++ ||+.|++++||+|+++|+|+++|+||+|||++||
T Consensus 424 ~~~~R~~d~GIaE~~mv~~A~GlA~~gG~~P~~~tf~~Fs~f~~~air~~al~~lpVv~v~~~~gigvG~dG~THq~ied 503 (690)
T 3m49_A 424 DYSGKNIWYGVREFAMGAAMNGIALHGGLKTYGGTFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQ 503 (690)
T ss_dssp BTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSH
T ss_pred cCCCceEEcCchHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHHHhcCCCcEEEEECCCcCCCCCCCccCCHHH
Confidence 4799999999999999999999999 775442 6778999999999999999999999999999999
Q ss_pred HHHhccCCCceeC
Q psy10436 196 IAMFRTIPACLVF 208 (208)
Q Consensus 196 ia~~r~lPn~~V~ 208 (208)
+++||+||||+|+
T Consensus 504 ~a~lr~iPnl~V~ 516 (690)
T 3m49_A 504 LAALRAMPNVSVI 516 (690)
T ss_dssp HHHHHTSTTCEEE
T ss_pred HHHHhcCCCCEEE
Confidence 9999999999985
No 4
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=2.1e-38 Score=305.63 Aligned_cols=177 Identities=26% Similarity=0.297 Sum_probs=154.0
Q ss_pred CccccCCCCCCCCCcchHHHHHhh-------------hHHHHHHhcCCeEE-EEcCCCCCCchHHHHHHHHHHhhcCCCC
Q psy10436 27 SNIKLSSPPSYKKGELVATRLAYG-------------IGLAKLAASNSRVI-ALDGDTKNSTFSDKLKKAFHEASQVKGK 92 (208)
Q Consensus 27 ~~~~~~~A~~~kLdNLi~i~D~~G-------------~~~~k~~a~G~~vi-~VDGhd~~~~~~~~l~~Al~~ak~~~~k 92 (208)
..|++++|++++|+|+++++|.++ +...+|+++||+++ .|||||+ ++|.+||+++++..+|
T Consensus 165 ~~Eal~~A~~~~L~~livi~dnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~-----~~l~~al~~A~~~~~~ 239 (663)
T 3kom_A 165 SHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWFSDNTPERFRAYGWHVIENVDGHDF-----VAIEKAINEAHSQQQK 239 (663)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECC-----CGGGTCCCCHHHHHHHTTCEEEEEEETTCH-----HHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHhCCCeEEEEEECCCcccccchhhhcchhHHHHHHHCCCeEEEEEcCCCH-----HHHHHHHHHHHhcCCC
Confidence 356777999999999999887322 35689999999999 7999998 9999999999986679
Q ss_pred CEEEEEEeecCCCCCccCCCccccCCcCC---------------------------------------------------
Q psy10436 93 PTALIAKTFKGKDFPNIEDKEEWHGKPLG--------------------------------------------------- 121 (208)
Q Consensus 93 P~vIi~~T~KG~G~~~~e~~~~~H~~~~~--------------------------------------------------- 121 (208)
|++|+++|+||+|++++|++.+|||.+++
T Consensus 240 P~lI~~~T~kg~G~~~~e~~~~~Hg~~l~~e~~~~~~~~l~~~~~pf~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~ 319 (663)
T 3kom_A 240 PTLICCKTVIGFGSPEKAGTASVHGSPLSDQERASAAKELNWDYQAFEIPQDVYKYWDAREKGQALEANWQGQRNLFKDS 319 (663)
T ss_dssp CEEEEEECCTTTTCTTTTTCSSTTSSCCCHHHHHHHHHHTTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHTTS
T ss_pred CEEEEEecccccccCCCCCCccccCCCCCHHHHHHHHHHcCCCCCCccCChhHHHHHHHHhhcchhhHHHHHHHHHhhcc
Confidence 99999999999999999999999986410
Q ss_pred ---------------------------------C--------------------------------Ccc------cc-cc
Q psy10436 122 ---------------------------------S--------------------------------SSA------DV-LK 129 (208)
Q Consensus 122 ---------------------------------~--------------------------------~l~------~f-~~ 129 (208)
. +.. .| ++
T Consensus 320 p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~ 399 (663)
T 3kom_A 320 PKFDEFERVLSKELPVGLESAINDYIASQLSNPVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNT 399 (663)
T ss_dssp TTHHHHHHHHHTCCCTTHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTC
T ss_pred hHHHHHHHHhccCCCcchhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccc
Confidence 0 001 24 37
Q ss_pred cCCCcceeeccccccHHHHHHHHHhC-CCcccE-------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 130 AYPDRYIECFIAEQNLVGVAIGAACR-NRTVPF-------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 130 ~~P~r~~~~GIaE~~mv~~AaGlA~~-G~~~~~-------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
+||+||||+|||||+|+++|+|||++ |++|++ ||+.|++++||+++++|+|+++|+||+|||++||
T Consensus 400 ~~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed 479 (663)
T 3kom_A 400 QEGANYLSYGVREFGMAAIMNGLSLYGGIKPYGGTFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQPIEH 479 (663)
T ss_dssp STTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGHHHHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSH
T ss_pred cCCCCeEecCccHHHHHHHHHHHHHcCCCEEEEEehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCcCCHHH
Confidence 89999999999999999999999999 875432 7778999999999999999999999999999999
Q ss_pred HHHhccCCCceeC
Q psy10436 196 IAMFRTIPACLVF 208 (208)
Q Consensus 196 ia~~r~lPn~~V~ 208 (208)
+++||++|||+|+
T Consensus 480 ~a~lr~iPnl~V~ 492 (663)
T 3kom_A 480 VPSLRLIPNLSVW 492 (663)
T ss_dssp HHHHHTSTTCEEE
T ss_pred HHHHhcCCCcEEE
Confidence 9999999999985
No 5
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=5.7e-38 Score=304.60 Aligned_cols=176 Identities=25% Similarity=0.307 Sum_probs=136.0
Q ss_pred CccccCCCCCCCCCcchHHHHHhh-------------hHHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCC
Q psy10436 27 SNIKLSSPPSYKKGELVATRLAYG-------------IGLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGK 92 (208)
Q Consensus 27 ~~~~~~~A~~~kLdNLi~i~D~~G-------------~~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~k 92 (208)
..|+++.|++++|+|+++++|.++ +...+|++|||+++. |||||+ ++|.+||+++++ .++
T Consensus 204 ~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~-----~~l~~Al~~A~~-~~~ 277 (711)
T 3uk1_A 204 SHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWFHDDTPKRFEAYGWNVIPNVNGHDV-----DAIDAAIAKAKR-SDK 277 (711)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHTTCEEEEEEETTCH-----HHHHHHHHHHTT-CSS
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCcccccchhhhcCCCHHHHHHHcCCcEEEEeCCCCH-----HHHHHHHHHHHh-CCC
Confidence 456677999999999999987322 356899999999998 899998 999999999987 479
Q ss_pred CEEEEEEeecCCCCCccCCCccccCCcCC---------------------------------------------------
Q psy10436 93 PTALIAKTFKGKDFPNIEDKEEWHGKPLG--------------------------------------------------- 121 (208)
Q Consensus 93 P~vIi~~T~KG~G~~~~e~~~~~H~~~~~--------------------------------------------------- 121 (208)
|++|+++|+||+|++++|++.+|||.+++
T Consensus 278 P~lI~v~T~kG~G~~~~e~~~~~Hg~~l~~e~~~~~~~~l~~~~~pF~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~ 357 (711)
T 3uk1_A 278 PSLICCKTRIGNGAATKAGGHDVHGAPLGADEIAKTREALGWTWAPFVIPQEVYAAWDAKEAGKRSEDDWNAAFAQYRAK 357 (711)
T ss_dssp CEEEEEEC--------------------CHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEccccccCCCCCCCcccccCCCCCHHHHHHHHHHhCCCCCCccCChHHHHHHHHHhccchhHHHHHHHHHHHHhh
Confidence 99999999999999999999999986310
Q ss_pred -----------------------------------C--------------------------------------Cccccc
Q psy10436 122 -----------------------------------S--------------------------------------SSADVL 128 (208)
Q Consensus 122 -----------------------------------~--------------------------------------~l~~f~ 128 (208)
. +...|+
T Consensus 358 ~p~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~ 437 (711)
T 3uk1_A 358 YPAEAAEFERRMAGTLPADWAAKAAAIVAGANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVR 437 (711)
T ss_dssp CHHHHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCE
T ss_pred ChhhHHHHHHhhccCCCchHHHHhhHhhhhhhccccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhh
Confidence 0 001466
Q ss_pred cc---CC---CcceeeccccccHHHHHHHHHhC-CCcccE-------------EEeccccCCCcEEEEecCCccccCCCC
Q psy10436 129 KA---YP---DRYIECFIAEQNLVGVAIGAACR-NRTVPF-------------IRMGAISQTNVNFVGSHCGVSIGEDGP 188 (208)
Q Consensus 129 ~~---~P---~r~~~~GIaE~~mv~~AaGlA~~-G~~~~~-------------ir~~a~~~~~v~~v~~~~G~~~g~dG~ 188 (208)
++ || +||||+|||||+|+++|+|||++ |++|++ ||+.|++++||+++++|+|+++|+||+
T Consensus 438 ~~~~~~p~~~~R~~d~GIaE~~mv~~AaGlA~~~G~~Pv~~~f~~F~~~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~ 517 (711)
T 3uk1_A 438 ANADGPGVQWGNHINYGVREFGMSAAINGLVLHGGYKPFGGTFLTFSDYSRNALRVAALMKVPSIFVFTHDSIGLGEDGP 517 (711)
T ss_dssp ECSSSSSEECCSEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCT
T ss_pred hhhccCCCCCCcEEEeCccHHHHHHHHHHHHHcCCCEEEEEEhHHHHHHHHHHHHHhhhcCCCEEEEEECCCcCcCCCCC
Confidence 77 99 99999999999999999999995 885442 777899999999999999999999999
Q ss_pred CCCChhHHHHhccCCCceeC
Q psy10436 189 SQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 189 TH~~ieDia~~r~lPn~~V~ 208 (208)
|||++||+++||+||||+|+
T Consensus 518 THq~~ed~a~lr~iPnl~V~ 537 (711)
T 3uk1_A 518 THQSVEHVASLRLIPNLDVW 537 (711)
T ss_dssp TTCCSSHHHHHHTSTTCEEE
T ss_pred ccCChhHHHHHhcCCCCEEE
Confidence 99999999999999999985
No 6
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=1.2e-36 Score=291.21 Aligned_cols=174 Identities=55% Similarity=0.838 Sum_probs=151.9
Q ss_pred CccccCCCCCCCCCcchHHHHHhh--------------hHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCC
Q psy10436 27 SNIKLSSPPSYKKGELVATRLAYG--------------IGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGK 92 (208)
Q Consensus 27 ~~~~~~~A~~~kLdNLi~i~D~~G--------------~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~k 92 (208)
.+|++++|++++|+|+++++|.++ +...+|++|||+++.|||||+ ++|.+||+++ +++
T Consensus 161 ~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~-----~~l~~al~~~---~~~ 232 (616)
T 3mos_A 161 VWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSV-----EELCKAFGQA---KHQ 232 (616)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHTTCEEEEEETTCH-----HHHHHHHHSC---CSS
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHcCCeEEEEcCCCH-----HHHHHHHHhc---CCC
Confidence 455666999999999998886221 346899999999999999998 9999999655 579
Q ss_pred CEEEEEEeecCCCCCccCCCccccCCcCCC--------------------------------------------------
Q psy10436 93 PTALIAKTFKGKDFPNIEDKEEWHGKPLGS-------------------------------------------------- 122 (208)
Q Consensus 93 P~vIi~~T~KG~G~~~~e~~~~~H~~~~~~-------------------------------------------------- 122 (208)
|++|+++|.||+|++++|++.+|||.+++.
T Consensus 233 P~lI~v~T~kg~G~~~~e~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (616)
T 3mos_A 233 PTAIIAKTFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDK 312 (616)
T ss_dssp CEEEEEECCTTTTSTTTTTCSSCTTCCCCHHHHHHHHHHHHHTCCCCCCCCCBCCCCCCCCCCCSCCCCSSCCCCCTTCB
T ss_pred CEEEEEEEecccccccccCchhhcCCCCCHHHHHHHHHHHHHHHHhhhhhCcCccchhhhhhhhhccccCCCcccccccc
Confidence 999999999999999999999999965410
Q ss_pred --------------------------------CcccccccCCCcceeeccccccHHHHHHHHHhCCCcccE---------
Q psy10436 123 --------------------------------SSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF--------- 161 (208)
Q Consensus 123 --------------------------------~l~~f~~~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------- 161 (208)
.+..|+++||+||||+||+||+|+++|+|||++|+++||
T Consensus 313 ~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~~~~~~~~~p~R~~d~gIaE~~~v~~a~G~A~~G~~~~~~~~f~~Fl~ 392 (616)
T 3mos_A 313 IATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFT 392 (616)
T ss_dssp CCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHSHHHHHHHCGGGEEECCSCHHHHHHHHHHHHGGGCCEEEEEEEGGGGG
T ss_pred hHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCcchhhHHHhCCCCeEEcCccHHHHHHHHHHHHHcCCCCEEEEehHHHHH
Confidence 014567889999999999999999999999999986665
Q ss_pred -----EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 162 -----IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 162 -----ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
||..+++++||+++++|+|+++|+||+|||++||+++||++|||+|+
T Consensus 393 ~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l~~iP~l~V~ 444 (616)
T 3mos_A 393 RAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVF 444 (616)
T ss_dssp GGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGGCBSSHHHHHHTSTTEEEE
T ss_pred HHHHHHHHHHHhCCCeEEEEECCCccccCCCCcccCHHHHHHhcCCCCCEEE
Confidence 67778999999999999999999999999999999999999999985
No 7
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=2.5e-36 Score=291.49 Aligned_cols=177 Identities=26% Similarity=0.364 Sum_probs=154.5
Q ss_pred CccccCCCCCCCCCcchHHHHHhh-------------hHHHHHHhcCCeEE-EEcCC-CCCCchHHHHHHHHHHhhcCCC
Q psy10436 27 SNIKLSSPPSYKKGELVATRLAYG-------------IGLAKLAASNSRVI-ALDGD-TKNSTFSDKLKKAFHEASQVKG 91 (208)
Q Consensus 27 ~~~~~~~A~~~kLdNLi~i~D~~G-------------~~~~k~~a~G~~vi-~VDGh-d~~~~~~~~l~~Al~~ak~~~~ 91 (208)
.+|++++|++++|+|+++++|.++ +...+|+++||+++ .|||| |+ ++|.+||+++++..+
T Consensus 176 ~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~~d~-----~~l~~al~~a~~~~~ 250 (675)
T 1itz_A 176 ANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSTRFEALGWHTIWVKNGNTGY-----DDIRAAIKEAKAVTD 250 (675)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCSCHHHHHHHTTCEEEEESCTTTCH-----HHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCccCCCChhhhcChhHHHHHHhCCCEEEEEecCCCCH-----HHHHHHHHHHHHCCC
Confidence 457777999999999999987332 35689999999999 78999 98 999999999987667
Q ss_pred CCEEEEEEeecCCCCCccCCCccccCCcCC--------------------------------------------------
Q psy10436 92 KPTALIAKTFKGKDFPNIEDKEEWHGKPLG-------------------------------------------------- 121 (208)
Q Consensus 92 kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~-------------------------------------------------- 121 (208)
+|++|+++|.||+|++++|++.+||+.+++
T Consensus 251 ~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 330 (675)
T 1itz_A 251 KPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPEGAALEADWNAKFAEYE 330 (675)
T ss_dssp SCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeeecccCcccccCcccccCCCCCHHHHHHHHHHcCCCcccccCChhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Confidence 999999999999999999999999986311
Q ss_pred ---------------------------------C--------------------------------------Ccccccc-
Q psy10436 122 ---------------------------------S--------------------------------------SSADVLK- 129 (208)
Q Consensus 122 ---------------------------------~--------------------------------------~l~~f~~- 129 (208)
. ++..|++
T Consensus 331 ~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~ 410 (675)
T 1itz_A 331 KKYADDAATLKSIITGELPTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKD 410 (675)
T ss_dssp HHSHHHHHHHHHHHHCCCCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTT
T ss_pred hhChHHHHHHHHHhcccCCchhhhhhhhhccCCcchHHHHHHHHHHHHHHHhCCCEEEEecccccccccccccccccccc
Confidence 0 0012676
Q ss_pred cCCCcceeeccccccHHHHHHHHHhCC--CcccE-------------EEeccccCCCcEEEEecCCccccCCCCCCCChh
Q psy10436 130 AYPDRYIECFIAEQNLVGVAIGAACRN--RTVPF-------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALE 194 (208)
Q Consensus 130 ~~P~r~~~~GIaE~~mv~~AaGlA~~G--~~~~~-------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ie 194 (208)
+||+||||+||+||+|+++|+|||++| ++|++ ||+.|++++||+++++|+|+++|+||+|||++|
T Consensus 411 ~~~~R~id~gIaE~~~v~~a~GlA~~G~~~~P~~~t~~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~e 490 (675)
T 1itz_A 411 TAEERNVRFGVREHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIE 490 (675)
T ss_dssp CTTCCBCCCCSCHHHHHHHHHHHHTTCTTCEEEEEEEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSS
T ss_pred CCCCCeEeecccHHHHHHHHHHHHhcCCCCEEEEEEHHHHHHHHHHHHHHHHhcCCCEEEEEECCccccCCCCCCcCcHH
Confidence 899999999999999999999999999 75432 777899999999999999999999999999999
Q ss_pred HHHHhccCCCceeC
Q psy10436 195 DIAMFRTIPACLVF 208 (208)
Q Consensus 195 Dia~~r~lPn~~V~ 208 (208)
|+++||++|||+|+
T Consensus 491 dla~lr~iP~l~V~ 504 (675)
T 1itz_A 491 HLVSFRAMPNILML 504 (675)
T ss_dssp HHHHHHSSSSCEEE
T ss_pred HHHHhccCCCeEEE
Confidence 99999999999985
No 8
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=4.6e-36 Score=289.26 Aligned_cols=177 Identities=28% Similarity=0.396 Sum_probs=153.8
Q ss_pred CccccCCCCCCCCCcchHHHHHhh-------------hHHHHHHhcCCeEE-EEcCCCCCCchHHHHHHHHHHhhcCCCC
Q psy10436 27 SNIKLSSPPSYKKGELVATRLAYG-------------IGLAKLAASNSRVI-ALDGDTKNSTFSDKLKKAFHEASQVKGK 92 (208)
Q Consensus 27 ~~~~~~~A~~~kLdNLi~i~D~~G-------------~~~~k~~a~G~~vi-~VDGhd~~~~~~~~l~~Al~~ak~~~~k 92 (208)
.+|++++|++++|+|+++++|.++ +...+|+++||+++ .|||||+ ++|.+|++++++..++
T Consensus 163 ~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~-----~~l~~al~~a~~~~~~ 237 (669)
T 2r8o_A 163 SHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDGHDA-----ASIKRAVEEARAVTDK 237 (669)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHTTCEEEEEEETTCH-----HHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCcEeccccccccCccHHHHHHHCCCeEEeEECCCCH-----HHHHHHHHHHHhcCCC
Confidence 356777999999999999987332 35689999999999 8999998 9999999999886679
Q ss_pred CEEEEEEeecCCCCCccCCCccccCCcCC---------------------------------------------------
Q psy10436 93 PTALIAKTFKGKDFPNIEDKEEWHGKPLG--------------------------------------------------- 121 (208)
Q Consensus 93 P~vIi~~T~KG~G~~~~e~~~~~H~~~~~--------------------------------------------------- 121 (208)
|++|+++|.||+|++++|++.+||+.+++
T Consensus 238 P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (669)
T 2r8o_A 238 PSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKA 317 (669)
T ss_dssp CEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeEeccCcCCcCCCCcccCCCCCHHHHHHHHHHcCCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Confidence 99999999999999998888888875210
Q ss_pred -----------------------------------C--------------------------------------Cccccc
Q psy10436 122 -----------------------------------S--------------------------------------SSADVL 128 (208)
Q Consensus 122 -----------------------------------~--------------------------------------~l~~f~ 128 (208)
. ++..|+
T Consensus 318 ~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~ 397 (669)
T 2r8o_A 318 YPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAIN 397 (669)
T ss_dssp CHHHHHHHHHHHHTCCCTTHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTT
T ss_pred ChHHHHHHHHHhcccCChhhhhhhHHHhhhhcCCCccHHHHHHHHHHHHHHHhhCCCeEEecCccccccccccccccccc
Confidence 0 012567
Q ss_pred ccCCCcceeeccccccHHHHHHHHHhC-CCcccE-------------EEeccccCCCcEEEEecCCccccCCCCCCCChh
Q psy10436 129 KAYPDRYIECFIAEQNLVGVAIGAACR-NRTVPF-------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALE 194 (208)
Q Consensus 129 ~~~P~r~~~~GIaE~~mv~~AaGlA~~-G~~~~~-------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ie 194 (208)
++||+||||+||+||+|+++|+|||++ |++|++ ||+.|++++||+++++|+|+++|+||+|||++|
T Consensus 398 ~~~p~R~id~GIaE~~~v~~a~GlA~~gG~~P~~~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tHq~~e 477 (669)
T 2r8o_A 398 EDAAGNYIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVE 477 (669)
T ss_dssp TCTTCSEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSS
T ss_pred ccCCCCeeecchhHHHHHHHHHHHHHcCCCeEEEeehHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCccCCHH
Confidence 789999999999999999999999999 775432 778899999999999999999999999999999
Q ss_pred HHHHhccCCCceeC
Q psy10436 195 DIAMFRTIPACLVF 208 (208)
Q Consensus 195 Dia~~r~lPn~~V~ 208 (208)
|+++||++|||+|+
T Consensus 478 dla~lr~iP~l~V~ 491 (669)
T 2r8o_A 478 QVASLRVTPNMSTW 491 (669)
T ss_dssp HHHHHHTSTTCEEE
T ss_pred HHHHhcCCCCCEEE
Confidence 99999999999985
No 9
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=3.1e-36 Score=290.85 Aligned_cols=175 Identities=28% Similarity=0.383 Sum_probs=152.6
Q ss_pred ccccCCCCCCCCCcchHHHHHhh-------------hHHHHHHhcCCeEE-EEcC-CCCCCchHHHHHHHHHHhhcCCCC
Q psy10436 28 NIKLSSPPSYKKGELVATRLAYG-------------IGLAKLAASNSRVI-ALDG-DTKNSTFSDKLKKAFHEASQVKGK 92 (208)
Q Consensus 28 ~~~~~~A~~~kLdNLi~i~D~~G-------------~~~~k~~a~G~~vi-~VDG-hd~~~~~~~~l~~Al~~ak~~~~k 92 (208)
+|++++|++++|+|++.++|.++ +...+|+++||+++ .||| ||+ ++|.+|++++++.++|
T Consensus 166 ~Eal~~A~~~~L~~li~i~d~N~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~~d~-----~~l~~Al~~A~~~~~~ 240 (673)
T 1r9j_A 166 QEALSLAGHLALEKLIVIYDSNYISIDGSTSLSFTEQCHQKYVAMGFHVIEVKNGDTDY-----EGLRKALAEAKATKGK 240 (673)
T ss_dssp HHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGTCCCCHHHHHHHTTCEEEEESCTTTCH-----HHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHhCCCcEEEEEECCCCccccchhhccCHhHHHHHHHCCCeEEEEeCCCCCH-----HHHHHHHHHHHHcCCC
Confidence 67778999999999999987432 35689999999999 7899 998 9999999999876789
Q ss_pred CEEEEEEeecCCCCCccCCCccccCCcCC---------------------------------------------------
Q psy10436 93 PTALIAKTFKGKDFPNIEDKEEWHGKPLG--------------------------------------------------- 121 (208)
Q Consensus 93 P~vIi~~T~KG~G~~~~e~~~~~H~~~~~--------------------------------------------------- 121 (208)
|++|+++|+||+|++ +|++..||+.+++
T Consensus 241 P~lI~~~T~kg~G~~-~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~~~~~ 319 (673)
T 1r9j_A 241 PKMIVQTTTIGFGSS-KQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYT 319 (673)
T ss_dssp CEEEEEECCTTTTST-TTTSGGGTSSCCCHHHHHHHHHHTTSCSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecccccccc-cCCCcccccCCCCHHHHHHHHHhcCCCCcccccCCHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 999999999999999 8889999985210
Q ss_pred ------------------------------CC---------------------------------c-------ccccc-c
Q psy10436 122 ------------------------------SS---------------------------------S-------ADVLK-A 130 (208)
Q Consensus 122 ------------------------------~~---------------------------------l-------~~f~~-~ 130 (208)
.. + ..|++ +
T Consensus 320 ~~~P~~~~~~~~~~~~~~p~~~~~~~p~~~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~ 399 (673)
T 1r9j_A 320 AAFPAEGAAFVAQMRGELPSGWEAKLPTNSSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSS 399 (673)
T ss_dssp HHCHHHHHHHHHHHTTCCCTTTGGGSCCCCSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTB
T ss_pred hhChhHHHHHHHHhcCCCCchhhhhccccccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccC
Confidence 00 0 11666 8
Q ss_pred CCCcceeeccccccHHHHHHHHHhCC-CcccE-------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHH
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRN-RTVPF-------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDI 196 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G-~~~~~-------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDi 196 (208)
||+||||+||+||+|+++|+|||++| ++|.+ ||++|++++||+++++|+|+++|+||+|||++||+
T Consensus 400 ~~~R~id~GIaE~~~~~~a~GlA~~GG~~P~~~~~~~F~~~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edl 479 (673)
T 1r9j_A 400 KEGRYIRFGVREHAMCAILNGLDAHDGIIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELV 479 (673)
T ss_dssp TTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred CCCCeEecCccHHHHHHHHHHHHhcCCCEEEEEehHHHHHHHHHHHHHHHhcCCCEEEEEECCccCcCCCCcccCCHHHH
Confidence 99999999999999999999999995 75432 77889999999999999999999999999999999
Q ss_pred HHhccCCCceeC
Q psy10436 197 AMFRTIPACLVF 208 (208)
Q Consensus 197 a~~r~lPn~~V~ 208 (208)
++||++|||+|+
T Consensus 480 a~lr~iP~l~V~ 491 (673)
T 1r9j_A 480 AALRAMPNLQVI 491 (673)
T ss_dssp HHHHHSTTCEEE
T ss_pred HHHcCCCCCEEE
Confidence 999999999985
No 10
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=1e-35 Score=287.34 Aligned_cols=176 Identities=27% Similarity=0.343 Sum_probs=151.9
Q ss_pred CccccCCCCCCCCCcchHHHHHhh-------------hHHHHHHhcCCeEE-EEcCC-CCCCchHHHHHHHHHHhhcCCC
Q psy10436 27 SNIKLSSPPSYKKGELVATRLAYG-------------IGLAKLAASNSRVI-ALDGD-TKNSTFSDKLKKAFHEASQVKG 91 (208)
Q Consensus 27 ~~~~~~~A~~~kLdNLi~i~D~~G-------------~~~~k~~a~G~~vi-~VDGh-d~~~~~~~~l~~Al~~ak~~~~ 91 (208)
.+|++++|++++|+|++.++|.++ +...+|+++||+++ .|||| |+ ++|.+|++++++..+
T Consensus 165 ~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~~d~-----~~l~~al~~A~~~~~ 239 (680)
T 1gpu_A 165 SSEASSLAGHLKLGNLIAIYDDNKITIDGATSISFDEDVAKRYEAYGWEVLYVENGNEDL-----AGIAKAIAQAKLSKD 239 (680)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHHTCEEEEESCTTTCH-----HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCceEecccccccCccHHHHHHhcCCeEEEEecCCCCH-----HHHHHHHHHHHHCCC
Confidence 356677999999999999987322 35689999999999 79999 98 999999999988667
Q ss_pred CCEEEEEEeecCCCCCccCCCccccCCcC---------------------------------------------------
Q psy10436 92 KPTALIAKTFKGKDFPNIEDKEEWHGKPL--------------------------------------------------- 120 (208)
Q Consensus 92 kP~vIi~~T~KG~G~~~~e~~~~~H~~~~--------------------------------------------------- 120 (208)
+|++|+++|.||+|++ .++..+||+.++
T Consensus 240 ~P~lI~~~T~kg~G~~-~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 318 (680)
T 1gpu_A 240 KPTLIKMTTTIGYGSL-HAGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSE 318 (680)
T ss_dssp SCEEEEEECCTTTTST-TTTSGGGSSSCCCHHHHHHHHHHTTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeecccccc-cCCCCccCCCCCCHHHHHHHHHHcCCCcCCCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9999999999999999 777778887531
Q ss_pred ----------------------------------CC--------------------------------------Cccccc
Q psy10436 121 ----------------------------------GS--------------------------------------SSADVL 128 (208)
Q Consensus 121 ----------------------------------~~--------------------------------------~l~~f~ 128 (208)
+. ++..|+
T Consensus 319 ~~~~~p~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~ 398 (680)
T 1gpu_A 319 YQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQ 398 (680)
T ss_dssp HHHHCHHHHHHHHHHHTTCCCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEEC
T ss_pred HHhhChHHHHHHHHHhcccCCchhhhhchhhccCCcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccc
Confidence 00 012477
Q ss_pred c------cCCCcceeeccccccHHHHHHHHHhCC-Cc-ccE-------------EEeccccCCCcEEEEecCCccccCCC
Q psy10436 129 K------AYPDRYIECFIAEQNLVGVAIGAACRN-RT-VPF-------------IRMGAISQTNVNFVGSHCGVSIGEDG 187 (208)
Q Consensus 129 ~------~~P~r~~~~GIaE~~mv~~AaGlA~~G-~~-~~~-------------ir~~a~~~~~v~~v~~~~G~~~g~dG 187 (208)
+ +||+||||+||+||+|+++|+|||++| ++ |++ ||+.|++++||+|+++|+|+++|+||
T Consensus 399 ~~~~~~~~~p~R~~d~gIaE~~~vg~a~GlA~~Gg~~~P~~~~f~~F~~~~~~air~~a~~~lpvv~v~t~~g~g~G~dG 478 (680)
T 1gpu_A 399 PPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDG 478 (680)
T ss_dssp CTTTSSEETTCCEEECCSCHHHHHHHHHHHHHHCTTCEEEEEEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTC
T ss_pred cccccccCCCCceecCCccHHHHHHHHHHHHhcCCCceEEEeehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccccCCCC
Confidence 7 899999999999999999999999998 75 432 77889999999999999999999999
Q ss_pred CCCCChhHHHHhccCCCceeC
Q psy10436 188 PSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 188 ~TH~~ieDia~~r~lPn~~V~ 208 (208)
+|||++||+++||++|||+|+
T Consensus 479 ~tHq~~edla~lr~iP~l~V~ 499 (680)
T 1gpu_A 479 PTHQPIETLAHFRSLPNIQVW 499 (680)
T ss_dssp TTTCCSSHHHHHHTSSSCEEE
T ss_pred CccCCHHHHHHhcCCCCCEEE
Confidence 999999999999999999985
No 11
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=2.3e-35 Score=283.68 Aligned_cols=175 Identities=23% Similarity=0.321 Sum_probs=151.9
Q ss_pred CccccCCCCCCCCCcchHHHHHhh-------------hHHHHHHhcCCeEE-EEcCCCCCCchHHHHHHHHHHhhcCCCC
Q psy10436 27 SNIKLSSPPSYKKGELVATRLAYG-------------IGLAKLAASNSRVI-ALDGDTKNSTFSDKLKKAFHEASQVKGK 92 (208)
Q Consensus 27 ~~~~~~~A~~~kLdNLi~i~D~~G-------------~~~~k~~a~G~~vi-~VDGhd~~~~~~~~l~~Al~~ak~~~~k 92 (208)
.+|++++|++++|+|+++++|.++ +...+|+++||+++ .|||||+ ++|.+||+++++ .++
T Consensus 167 ~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~G~~~~~~vdG~d~-----~~l~~al~~a~~-~~~ 240 (651)
T 2e6k_A 167 SGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAFTEDVLARYRAYGWQTLRVEDVNDL-----EALRKAIKLAKL-DER 240 (651)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECCEETTEEGGGTCCSCHHHHHHHTTCEEEEESCTTCH-----HHHHHHHHHHHH-SSS
T ss_pred HHHHHHHHHHcCCCeEEEEEECCCcccccccccccCccHHHHHHhCCCeEEEEeCCCCH-----HHHHHHHHHHHH-CCC
Confidence 356677999999999999987332 35689999999999 7999998 999999999987 679
Q ss_pred CEEEEEEeecCCCCCccCCCccccCCcCC---------------------------------------------------
Q psy10436 93 PTALIAKTFKGKDFPNIEDKEEWHGKPLG--------------------------------------------------- 121 (208)
Q Consensus 93 P~vIi~~T~KG~G~~~~e~~~~~H~~~~~--------------------------------------------------- 121 (208)
|++|+++|.||+|++ .+++..||+.+++
T Consensus 241 P~lI~~~t~kg~G~~-~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (651)
T 2e6k_A 241 PTLIAVRSHIGFGSP-KQDSAKAHGEPLGPEAVEATRRNLGWPYPPFVVPEEVYRHMDMREKGRAWQEAWEKALEAYARA 319 (651)
T ss_dssp CEEEEEECCTTTTST-TTTSGGGTSSCCHHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeEeccccc-ccccccccccCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHhhhchhhHHHHHHHHHHhhhh
Confidence 999999999999999 8888999975310
Q ss_pred ----------------------------C-------------------------------------Ccccccc-cCCCcc
Q psy10436 122 ----------------------------S-------------------------------------SSADVLK-AYPDRY 135 (208)
Q Consensus 122 ----------------------------~-------------------------------------~l~~f~~-~~P~r~ 135 (208)
. ++..|++ +||+||
T Consensus 320 ~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~p~R~ 399 (651)
T 2e6k_A 320 YPDLHQELMRRLRGELPPLPEEPPSFDKPIATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRY 399 (651)
T ss_dssp CHHHHHHHHHHHTTCCCCCCCSCCCCCSCBCHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBTTCCE
T ss_pred ChHHHHHHHHHhcCcCCchhhhccccCccHHHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCCCCce
Confidence 0 0123676 899999
Q ss_pred eeeccccccHHHHHHHHHhCC-CcccE-------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhcc
Q psy10436 136 IECFIAEQNLVGVAIGAACRN-RTVPF-------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRT 201 (208)
Q Consensus 136 ~~~GIaE~~mv~~AaGlA~~G-~~~~~-------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~ 201 (208)
||+||+||+|+++|+|||++| ++|++ ||+.|++++||+++++|+|+++|+||+|||++||+++||+
T Consensus 400 i~~gIaE~~~~~~a~GlA~~Gg~~P~~~t~~~F~~~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~ 479 (651)
T 2e6k_A 400 LHFGVREHAMGAILNGLNLHGGYRAYGGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLRA 479 (651)
T ss_dssp EECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGGGGSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHT
T ss_pred EecCcCHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccccCCCcCccccHHHHHHhcC
Confidence 999999999999999999998 75432 7788999999999999999999999999999999999999
Q ss_pred CCCceeC
Q psy10436 202 IPACLVF 208 (208)
Q Consensus 202 lPn~~V~ 208 (208)
+|||+|+
T Consensus 480 iP~l~V~ 486 (651)
T 2e6k_A 480 MPNLFVI 486 (651)
T ss_dssp STTCEEE
T ss_pred CCCcEEE
Confidence 9999985
No 12
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.97 E-value=4.4e-32 Score=259.62 Aligned_cols=148 Identities=29% Similarity=0.430 Sum_probs=131.6
Q ss_pred HHHHhcCCeEE-EEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccC-CCccccCCcC-----------
Q psy10436 54 AKLAASNSRVI-ALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIE-DKEEWHGKPL----------- 120 (208)
Q Consensus 54 ~k~~a~G~~vi-~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e-~~~~~H~~~~----------- 120 (208)
.+++++||+++ .|||||. ++|.++|+++++. ++|++|+++|.||+|++++| ++..||+.++
T Consensus 246 ~~~ea~G~~~~g~vdG~d~-----~~l~~al~~A~~~-~~P~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~~~~~~ 319 (629)
T 2o1x_A 246 NPFAAMGVRYVGPVDGHNV-----QELVWLLERLVDL-DGPTILHIVTTKGKGLSYAEADPIYWHGPAKFDPATGEYVPS 319 (629)
T ss_dssp CTTGGGTCEEEEEEESSCH-----HHHHHHHHHHTTS-SSEEEEEEECCTTTTCHHHHHCTTGGGSCCSBCTTTCCBCCC
T ss_pred hHHHhcCCeEEeeECCcCH-----HHHHHHHHHHHhc-CCCEEEEEEEecCCCCChhHcCCcccccCccCCcCcCccccc
Confidence 67999999999 7999998 9999999999875 68999999999999999887 5669998531
Q ss_pred --------------------------------CCCcccccccCCCcceeeccccccHHHHHHHHHhCCCcccE-------
Q psy10436 121 --------------------------------GSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF------- 161 (208)
Q Consensus 121 --------------------------------~~~l~~f~~~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~------- 161 (208)
+.++..|+++||+||||+||+||+|+++|+|||++|++|.+
T Consensus 320 ~~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~~~~F~ 399 (629)
T 2o1x_A 320 SAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIYSTFL 399 (629)
T ss_dssp CCCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCGGGEEECCSCHHHHHHHHHHHHHTTCEEEEEEEHHHH
T ss_pred chHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhcCcceEeccccHHHHHHHHHHHHHcCCEEEEEecHHHH
Confidence 12356788999999999999999999999999999986432
Q ss_pred -------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 162 -------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 162 -------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
++++|++++||+++++++|+ +|+||+|||++||+++||++|||+|+
T Consensus 400 ~~a~dqi~~~~a~~~~pvv~~~~~~g~-~g~dG~tH~~~~d~a~~r~iP~l~v~ 452 (629)
T 2o1x_A 400 QRAYDQVLHDVAIEHLNVTFCIDRAGI-VGADGATHNGVFDLSFLRSIPGVRIG 452 (629)
T ss_dssp GGGHHHHHHTTTTTTCCCEEEEESBBC-CCTTCTTTCBCSHHHHTTTSTTCEEE
T ss_pred HHHHHHHHHHHhhcCCCEEEEEECCcc-CCCCCcccCccHHHHHHHccCCcEEE
Confidence 45679999999999999999 79999999999999999999999985
No 13
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=99.97 E-value=1.2e-31 Score=256.10 Aligned_cols=149 Identities=26% Similarity=0.386 Sum_probs=124.8
Q ss_pred HHHHHhcCCeEE-EEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccC-CCccccCCcC----------
Q psy10436 53 LAKLAASNSRVI-ALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIE-DKEEWHGKPL---------- 120 (208)
Q Consensus 53 ~~k~~a~G~~vi-~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e-~~~~~H~~~~---------- 120 (208)
..+|+++||+++ .|||||+ ++|.+|++++++. ++|++|+++|.||+|++++| ++.+||+.++
T Consensus 240 ~~~~ea~G~~~~g~vdG~d~-----~~l~~al~~A~~~-~gP~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~~~~~ 313 (621)
T 2o1s_A 240 GTLFEELGFNYIGPVDGHDV-----LGLITTLKNMRDL-KGPQFLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPK 313 (621)
T ss_dssp HHHHHHTTCEEEEEEETTCH-----HHHHHHHHHHHHS-CSEEEEEEECCCTTCCCCC----------------------
T ss_pred hhHHHHCCCeEeeeeCCCCH-----HHHHHHHHHHHHc-CCCEEEEEEEecccCCChhhcCchhccCCCCCCCCcCcccc
Confidence 378999999999 7999998 9999999999876 58999999999999999887 5569998421
Q ss_pred -----------------------------------CCCcccccccCCCcceeeccccccHHHHHHHHHhCCCcccE----
Q psy10436 121 -----------------------------------GSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF---- 161 (208)
Q Consensus 121 -----------------------------------~~~l~~f~~~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---- 161 (208)
+.++..|+++||+||||+||+||+|+++|+|||++|++|.+
T Consensus 314 ~~~~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~~~ 393 (621)
T 2o1s_A 314 SSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYS 393 (621)
T ss_dssp ----CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred cccchHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHhCCCceEecCcCHHHHHHHHHHHHHCCCEEEEEehH
Confidence 12356788999999999999999999999999999985442
Q ss_pred ----------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 162 ----------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 162 ----------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
++++|++++||+++++|+|+ +|+||+|||++||+++||++|||+|+
T Consensus 394 ~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~l~v~ 449 (621)
T 2o1s_A 394 TFLQRAYDQVLHDVAIQKLPVLFAIDRAGI-VGADGQTHQGAFDLSYLRCIPEMVIM 449 (621)
T ss_dssp TGGGGGHHHHHHTTTTTTCCCEEEEESCBC-CCTTCGGGCBCSHHHHTTTSTTCEEE
T ss_pred hHHHHHHHHHHHHHHhcCCCEEEEEECCcc-CCCCCCccCchHHHHHHhcCCCCEEE
Confidence 44579999999999999999 69999999999999999999999985
No 14
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=99.96 E-value=1.5e-29 Score=248.35 Aligned_cols=173 Identities=16% Similarity=0.078 Sum_probs=134.3
Q ss_pred cccC--CCCCCCCCcchHHHHHhh---------------hHHHHHHhcCCeEE-EEcC-C--CCCCchHHHHHHHHH---
Q psy10436 29 IKLS--SPPSYKKGELVATRLAYG---------------IGLAKLAASNSRVI-ALDG-D--TKNSTFSDKLKKAFH--- 84 (208)
Q Consensus 29 ~~~~--~A~~~kLdNLi~i~D~~G---------------~~~~k~~a~G~~vi-~VDG-h--d~~~~~~~~l~~Al~--- 84 (208)
.|++ ++.+++++||++++|.+| ++..+|++|||+++ .||| | |+ ++|.+||+
T Consensus 213 ~wea~~~~~~~~l~nl~~i~D~N~~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~-----~~i~~a~~~al 287 (845)
T 3ahc_A 213 GWQSNKLVNPRTDGIVLPILHLNGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDH-----MSIHRRFAELF 287 (845)
T ss_dssp HGGGGGSCCTTTSCEEEEEEEECSBSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCH-----HHHHHHHHHHH
T ss_pred hhHHhhhhhhhcCCCEEEEEECCCCcCCCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCH-----HHHHHHHHHHH
Confidence 5555 899999999999998433 34689999999999 8999 9 98 77777754
Q ss_pred ------------Hhhc-CCCCC--EEEEEEeecCC-------CCCccCCCccccCCcCCC--------------------
Q psy10436 85 ------------EASQ-VKGKP--TALIAKTFKGK-------DFPNIEDKEEWHGKPLGS-------------------- 122 (208)
Q Consensus 85 ------------~ak~-~~~kP--~vIi~~T~KG~-------G~~~~e~~~~~H~~~~~~-------------------- 122 (208)
+++. .++|| ++|+++|+||+ |++ +|+...||+.+++.
T Consensus 288 ~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~tgp~~~~G~~-~eg~~~~H~~pl~~~~~~~~~~~~l~~wl~~~~p 366 (845)
T 3ahc_A 288 ETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGKK-TEGSWRAHQVPLASARDTEEHFEVLKGWMESYKP 366 (845)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCTTTTSCSEETTEE-CTTSGGGSSCSCTTTTTCHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEEECcccCCCCCCCCCcc-cCCCccccCCCCCCcccCHHHHHHHhhhccCCCc
Confidence 2444 35799 99999999999 995 78888899865321
Q ss_pred ----------------------------------------------------------C---------------------
Q psy10436 123 ----------------------------------------------------------S--------------------- 123 (208)
Q Consensus 123 ----------------------------------------------------------~--------------------- 123 (208)
+
T Consensus 367 ~elF~~~~~~~~~~~~~~~~g~~r~~~~P~~~~g~l~~~~~lp~~~~~~~~~~~~~~~g~~~~~atra~g~~L~~l~~~~ 446 (845)
T 3ahc_A 367 EELFNADGSIKDDVTAFMPKGELRIGANPNANGGVIREDLKLPELDQYEVTGVKEYGHGWGQVEAPRALGAYCRDIIKNN 446 (845)
T ss_dssp GGTBCTTSCBCHHHHTTSCCGGGSTTTCGGGGGGGTCCCCCCCCGGGGCCTHHHHHCTTEEEECTHHHHHHHHHHHHHHS
T ss_pred hhccCCchHHHHHHHHhCcchHhHhhhCHHhcCCcCccccCCCChHhhhccccccccCCccchhHHHHHHHHHHHHHHhC
Confidence 1
Q ss_pred ----------------ccccccc---------C--C--------CcceeeccccccHHHHHHHHHhCCCcccE-------
Q psy10436 124 ----------------SADVLKA---------Y--P--------DRYIECFIAEQNLVGVAIGAACRNRTVPF------- 161 (208)
Q Consensus 124 ----------------l~~f~~~---------~--P--------~r~~~~GIaE~~mv~~AaGlA~~G~~~~~------- 161 (208)
+..|.+. + | +|||+ ||+||+|+++|+|||++|+.+.+
T Consensus 447 p~~~vv~sADl~~Sn~t~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh~M~gia~Glal~G~~~f~~t~atFl 525 (845)
T 3ahc_A 447 PDSFRIFGPDETASNRLNATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEHQCEGFLEAYLLTGRHGIWSSYESFV 525 (845)
T ss_dssp TTTEEEEESSCTTTTTCGGGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCHHHHHHHHHHHHHTTCEEEEEEEHHHH
T ss_pred CCcEEEEecCCCccccHHHHHhhcccccccccccCCcccccCCCCcEee-eecHHHHHHHHHHHHhcCCCCceecchhhh
Confidence 0112234 6 7 89999 99999999999999999985332
Q ss_pred -------------EEec-ccc----CC-CcEEEEecCCccccCCCCCCCCh--hHHHHhc---cCCCceeC
Q psy10436 162 -------------IRMG-AIS----QT-NVNFVGSHCGVSIGEDGPSQMAL--EDIAMFR---TIPACLVF 208 (208)
Q Consensus 162 -------------ir~~-a~~----~~-~v~~v~~~~G~~~g~dG~TH~~i--eDia~~r---~lPn~~V~ 208 (208)
||+. +++ .+ +|++|+||+|+++|+||+|||++ +|+..+| ++|||+|+
T Consensus 526 ~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~d~l~~~r~~~iPn~~V~ 596 (845)
T 3ahc_A 526 HVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINKTFNNDHVTNIY 596 (845)
T ss_dssp GGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGGCCCTHHHHHGGGCCTTCCCEEEE
T ss_pred chhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCCCCcHHHHHHHHhhccCCCCeEEE
Confidence 3433 333 34 79999999999999999999995 5555555 67999985
No 15
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=99.95 E-value=1.2e-29 Score=251.06 Aligned_cols=177 Identities=19% Similarity=0.174 Sum_probs=136.8
Q ss_pred CccccCCCCCCCCCcchHHHHHhh---------------hHHHHHHhcCCeEEEE-------------------------
Q psy10436 27 SNIKLSSPPSYKKGELVATRLAYG---------------IGLAKLAASNSRVIAL------------------------- 66 (208)
Q Consensus 27 ~~~~~~~A~~~kLdNLi~i~D~~G---------------~~~~k~~a~G~~vi~V------------------------- 66 (208)
++|++++|++++|+||+.+++.++ ++..+|+++||+++.+
T Consensus 238 ~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~ 317 (886)
T 2qtc_A 238 SKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNET 317 (886)
T ss_dssp HHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHC
T ss_pred hHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhc
Confidence 567777999999999999987322 2357999999999987
Q ss_pred --------------------------------------------cCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeec
Q psy10436 67 --------------------------------------------DGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFK 102 (208)
Q Consensus 67 --------------------------------------------DGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~K 102 (208)
||||+ ++|.+|++++++.+++|++|+++|+|
T Consensus 318 ~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~-----~~l~~a~~~A~~~~~~PtlI~~~T~K 392 (886)
T 2qtc_A 318 VDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDP-----KKIYAAFKKAQETKGKATVILAHTIK 392 (886)
T ss_dssp CHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCH-----HHHHHHHHHHHHCCSSCEEEEEECCT
T ss_pred cchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCH-----HHHHHHHHHHHHcCCCCEEEEEeeee
Confidence 79998 99999999999877899999999999
Q ss_pred CCCCC-ccCCCccccCCc--------------------------------------------------------------
Q psy10436 103 GKDFP-NIEDKEEWHGKP-------------------------------------------------------------- 119 (208)
Q Consensus 103 G~G~~-~~e~~~~~H~~~-------------------------------------------------------------- 119 (208)
|+|++ ..|++..||+..
T Consensus 393 G~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~~~~~e~~~~~~f~~~~~~~~~~~~~~~r~~~l~g~~p~~~~~~~~~ 472 (886)
T 2qtc_A 393 GYGMGDAAKGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEK 472 (886)
T ss_dssp TTTCTTCC-------------CHHHHHHHHHTTCSCCHHHHTTCCCCCCCTTSHHHHHHHHHHHHTTSCSSCCCCSCCSC
T ss_pred ccccchhhcCCccccCCCCCCHHHHHHHHHHcCCCCChhhhccccccCCccchHHHHHHHHHHHHhcccCcchhhhhhhc
Confidence 99997 667888888641
Q ss_pred ---C----------CCC----------------------------------------------------ccccc------
Q psy10436 120 ---L----------GSS----------------------------------------------------SADVL------ 128 (208)
Q Consensus 120 ---~----------~~~----------------------------------------------------l~~f~------ 128 (208)
+ +++ ...|.
T Consensus 473 ~~~p~~~~~~~~~~~~~~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~ 552 (886)
T 2qtc_A 473 LELPSLQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQ 552 (886)
T ss_dssp CCCCCGGGGHHHHSCCSSCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSGGGTCHHHHHHHCBBCC------------
T ss_pred ccCCchhhhhhhccCCCCcchHHHHHHHHHHHHHhhcccCCcEEEEcCccccccCcccccccccccccCCcccccccchh
Confidence 0 000 01232
Q ss_pred -----ccCCCcceeeccccccH-H---HHHHHHHhCC--CcccEE--------------E-eccccCCCcEEEEecCCcc
Q psy10436 129 -----KAYPDRYIECFIAEQNL-V---GVAIGAACRN--RTVPFI--------------R-MGAISQTNVNFVGSHCGVS 182 (208)
Q Consensus 129 -----~~~P~r~~~~GIaE~~m-v---~~AaGlA~~G--~~~~~i--------------r-~~a~~~~~v~~v~~~~G~~ 182 (208)
+.||+||||+||+||+| + ++|+|||++| ++|+++ + +++|+++++++.++..+..
T Consensus 553 ~~~~~e~~~~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~F~~qRa~Dqi~~~~d~~~~~v~l~~~~~~~~ 632 (886)
T 2qtc_A 553 VAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTT 632 (886)
T ss_dssp -----CBTTCCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHHHHHHHHHHHHTTCCCEEEEESCSTTT
T ss_pred hhhhhhcCCCceeeeccCchhhhhHHHHHHHHHHhcCCCceEEEEEehHHHHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 57899999999999995 5 7999999999 544331 1 1378999999998877777
Q ss_pred ccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 183 IGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 183 ~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
+|+||+|||++||+++||++|||+|+
T Consensus 633 ~g~dG~tHq~~~~~a~lr~iPnl~V~ 658 (886)
T 2qtc_A 633 LNGEGLQHEDGHSHIQSLTIPNCISY 658 (886)
T ss_dssp STTTCTTTCCSCHHHHHTTSTTEEEE
T ss_pred CCCCCCccCCcchHHHHhhCCCCEEE
Confidence 89999999999999999999999985
No 16
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=99.79 E-value=1.4e-20 Score=170.26 Aligned_cols=82 Identities=17% Similarity=0.188 Sum_probs=61.4
Q ss_pred cccccccC-CCcceeeccccccHHHHHHHHHhCCCcccE--------------EEe-cccc--------CCCcEEEEecC
Q psy10436 124 SADVLKAY-PDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRM-GAIS--------QTNVNFVGSHC 179 (208)
Q Consensus 124 l~~f~~~~-P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir~-~a~~--------~~~v~~v~~~~ 179 (208)
+..|+++| |+||||+||+||+|+++|+|||++|++|.+ ||. +|++ ++||+++++|+
T Consensus 88 ~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~g 167 (369)
T 1ik6_A 88 TEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVG 167 (369)
T ss_dssp TTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEEC
T ss_pred HHHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 35678899 999999999999999999999999986443 443 4666 99999999999
Q ss_pred CccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 180 GVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 180 G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
|. .| +|+||++.+ +++||++|||+|+
T Consensus 168 g~-~g-~g~~hs~~~-~a~l~~iPnl~V~ 193 (369)
T 1ik6_A 168 SG-TR-GGLYHSNSP-EAIFVHTPGLVVV 193 (369)
T ss_dssp C-------------H-HHHHHTCTTCEEE
T ss_pred CC-CC-CCccccccH-HHHHcCCCCcEEE
Confidence 96 45 888888765 7999999999985
No 17
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=99.77 E-value=1.9e-19 Score=160.20 Aligned_cols=82 Identities=20% Similarity=0.192 Sum_probs=71.4
Q ss_pred cccccccC-CCcceeeccccccHHHHHHHHHhCCCcccE--------------EE-ecccc--------CCCcEEEEecC
Q psy10436 124 SADVLKAY-PDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IR-MGAIS--------QTNVNFVGSHC 179 (208)
Q Consensus 124 l~~f~~~~-P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir-~~a~~--------~~~v~~v~~~~ 179 (208)
+..|+++| |+||||+||+||+|+++|+|||++|++|.+ +| ++|.+ ++||+++++|+
T Consensus 42 ~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~ 121 (338)
T 1qs0_B 42 TEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCG 121 (338)
T ss_dssp TTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEEC
T ss_pred HHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEEeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCC
Confidence 45678899 999999999999999999999999985433 44 35644 49999999999
Q ss_pred CccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 180 GVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 180 G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
| +.||+|||+.+|+++||++|||+|+
T Consensus 122 g---~~~G~th~s~~d~~~l~~iP~l~V~ 147 (338)
T 1qs0_B 122 G---GIYGGQTHSQSPEAMFTQVCGLRTV 147 (338)
T ss_dssp C---SSSCCSSSSCCCHHHHTTSTTCEEE
T ss_pred C---CCCCcccccccHHHHHhcCCCCEEE
Confidence 7 6899999999999999999999985
No 18
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=99.76 E-value=1.7e-19 Score=161.21 Aligned_cols=119 Identities=18% Similarity=0.148 Sum_probs=95.0
Q ss_pred chHHHHHhhhHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCC
Q psy10436 42 LVATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLG 121 (208)
Q Consensus 42 Li~i~D~~G~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~ 121 (208)
...+++++++.+.++.+.+.+++.+..|.. ++.+ .
T Consensus 20 ~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~-~~gt--------------------------------------------~ 54 (342)
T 2bfd_B 20 KMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGV--------------------------------------------F 54 (342)
T ss_dssp EECHHHHHHHHHHHHHHHCTTCEEEETTTT-TTCT--------------------------------------------T
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEcCccC-CCcc--------------------------------------------c
Confidence 356889999999889889999988765542 1110 0
Q ss_pred CCcccccccC-CCcceeeccccccHHHHHHHHHhCCCcccE--------------EE-eccccCC---------CcEEEE
Q psy10436 122 SSSADVLKAY-PDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IR-MGAISQT---------NVNFVG 176 (208)
Q Consensus 122 ~~l~~f~~~~-P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir-~~a~~~~---------~v~~v~ 176 (208)
..+..|+++| |+||||+||+||+|+++|+|||++|++|.+ +| ++|++++ ||++++
T Consensus 55 ~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~ 134 (342)
T 2bfd_B 55 RCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRS 134 (342)
T ss_dssp STTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEE
T ss_pred chHHHHHHHhCCCeEEEcCcCHHHHHHHHHHHHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEE
Confidence 1234577799 999999999999999999999999986443 45 4565444 999999
Q ss_pred ecCCccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 177 SHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 177 ~~~G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
+|+|. .||+|||+.+|+++||++|||+|+
T Consensus 135 ~~~g~---~~G~th~~~~d~~~l~~iP~l~V~ 163 (342)
T 2bfd_B 135 PWGCV---GHGALYHSQSPEAFFAHCPGIKVV 163 (342)
T ss_dssp EESCC---SSCGGGSSCCCHHHHHTSTTCEEE
T ss_pred ecCCC---CCCcchhhHhHHHHHhcCCCcEEE
Confidence 99874 599999999999999999999985
No 19
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=99.73 E-value=1.7e-18 Score=154.89 Aligned_cols=119 Identities=21% Similarity=0.268 Sum_probs=92.0
Q ss_pred chHHHHHhhhHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCC
Q psy10436 42 LVATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLG 121 (208)
Q Consensus 42 Li~i~D~~G~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~ 121 (208)
.+.+++++++.+.++.+.+.+++.++.|...+ |.. .
T Consensus 14 ~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~-----------------------------g~~---------------~ 49 (341)
T 2ozl_B 14 QVTVRDAINQGMDEELERDEKVFLLGEEVAQY-----------------------------DGA---------------Y 49 (341)
T ss_dssp EEEHHHHHHHHHHHHHHHCTTEEEEETTSSTT-----------------------------CCT---------------T
T ss_pred cccHHHHHHHHHHHHHhhCCCEEEECCccccc-----------------------------CCc---------------c
Confidence 35678888888888888888888776554310 000 0
Q ss_pred CCcccccccC-CCcceeeccccccHHHHHHHHHhCCCcccE--------------EEe-cc---c-----cCCCcEEEEe
Q psy10436 122 SSSADVLKAY-PDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRM-GA---I-----SQTNVNFVGS 177 (208)
Q Consensus 122 ~~l~~f~~~~-P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir~-~a---~-----~~~~v~~v~~ 177 (208)
..+..|+++| |+||||+||+||+|+++|+|||++|++|.+ +|. +| | +++||+++++
T Consensus 50 ~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~ 129 (341)
T 2ozl_B 50 KVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGP 129 (341)
T ss_dssp STTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEE
T ss_pred hhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEc
Confidence 1134577799 999999999999999999999999985443 554 46 3 8999999999
Q ss_pred cCCccccCCCCCC-CChhHHHHhccCCCceeC
Q psy10436 178 HCGVSIGEDGPSQ-MALEDIAMFRTIPACLVF 208 (208)
Q Consensus 178 ~~G~~~g~dG~TH-~~ieDia~~r~lPn~~V~ 208 (208)
| |+ +|+||+|| |++| ++||++|||+|+
T Consensus 130 ~-G~-~g~~G~tHs~~~e--a~l~~iP~l~V~ 157 (341)
T 2ozl_B 130 N-GA-SAGVAAQHSQCFA--AWYGHCPGLKVV 157 (341)
T ss_dssp C-SC-CSSCCGGGCCCCH--HHHHTSTTCEEE
T ss_pred C-cC-CCCCCcchhhHHH--HHhccCCCCEEE
Confidence 8 64 78999999 6665 999999999985
No 20
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=99.73 E-value=2.7e-18 Score=169.84 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=65.4
Q ss_pred cc-cCCCcceeeccccccHHHHHHHHHhCCCc--ccE-----------------EEecc----ccCCCcEEEEecCCccc
Q psy10436 128 LK-AYPDRYIECFIAEQNLVGVAIGAACRNRT--VPF-----------------IRMGA----ISQTNVNFVGSHCGVSI 183 (208)
Q Consensus 128 ~~-~~P~r~~~~GIaE~~mv~~AaGlA~~G~~--~~~-----------------ir~~a----~~~~~v~~v~~~~G~~~ 183 (208)
.+ .+|+||||+||+||+|+|+|+|||+.|++ ++| ++..+ ++++||+++++|+| .
T Consensus 578 ~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~--~ 655 (868)
T 2yic_A 578 TPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH--E 655 (868)
T ss_dssp CBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC--S
T ss_pred hhhcCCcEEEECCccHHHHHHHHHHHHccCCCCceEEEEehHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCC--C
Confidence 44 57999999999999999999999999964 333 22222 45899999999988 4
Q ss_pred cCCCCCCCC--hhHHHHhccCCCceeC
Q psy10436 184 GEDGPSQMA--LEDIAMFRTIPACLVF 208 (208)
Q Consensus 184 g~dG~TH~~--ieDia~~r~lPn~~V~ 208 (208)
| +|+||++ +|++..||++|||+|+
T Consensus 656 G-~Gp~Hs~~~~E~~l~l~~~pnm~V~ 681 (868)
T 2yic_A 656 G-QGPDHTSGRIERFLQLWAEGSMTIA 681 (868)
T ss_dssp S-SCTTSSCCCHHHHHHHCCTTSCEEE
T ss_pred C-CChhhcCCcHHHHHhcCCCCCCEEE
Confidence 7 9999997 9999999999999985
No 21
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=99.73 E-value=2e-18 Score=171.82 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=67.5
Q ss_pred ccccccC-CCcceeeccccccHHHHHHHHHhCCCc--ccE-----------------EE-ec-c--ccCCCcEEEEecCC
Q psy10436 125 ADVLKAY-PDRYIECFIAEQNLVGVAIGAACRNRT--VPF-----------------IR-MG-A--ISQTNVNFVGSHCG 180 (208)
Q Consensus 125 ~~f~~~~-P~r~~~~GIaE~~mv~~AaGlA~~G~~--~~~-----------------ir-~~-a--~~~~~v~~v~~~~G 180 (208)
..|+++| |+||||+||+||+++++|+|||+.|.+ |+| ++ .. + .+++||+++.+|+
T Consensus 643 ~~l~~~~gp~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~~~~~~vv~~l~~G- 721 (933)
T 2jgd_A 643 QHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHG- 721 (933)
T ss_dssp GCSCTTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECC-
T ss_pred HHHHHHcCCCeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEEEhhhhcccHHHHHHHHHHHHHHHccCCCEEEEEeCC-
Confidence 3577889 999999999999999999999999986 544 22 22 3 3589999999994
Q ss_pred ccccCCCCCCCC--hhHHHHhccCCCceeC
Q psy10436 181 VSIGEDGPSQMA--LEDIAMFRTIPACLVF 208 (208)
Q Consensus 181 ~~~g~dG~TH~~--ieDia~~r~lPn~~V~ 208 (208)
+ .| .|+|||+ +|++..|+++|||+|+
T Consensus 722 ~-~g-~G~~Hss~~~E~~l~~~~~pnm~V~ 749 (933)
T 2jgd_A 722 Y-EG-QGPEHSSARLERYLQLCAEQNMQVC 749 (933)
T ss_dssp C-SS-SCTTSSCCCHHHHHHTCCTTCCEEE
T ss_pred C-CC-CCcccccchHHHHHHHhCCCCeEEE
Confidence 4 35 4999998 8999999999999985
No 22
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=99.71 E-value=1.1e-17 Score=148.17 Aligned_cols=82 Identities=17% Similarity=0.111 Sum_probs=68.8
Q ss_pred cccccccC-CCcceeeccccccHHHHHHHHHhCCCcccE--------------EE-eccc--------cCCCcEEEEecC
Q psy10436 124 SADVLKAY-PDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IR-MGAI--------SQTNVNFVGSHC 179 (208)
Q Consensus 124 l~~f~~~~-P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir-~~a~--------~~~~v~~v~~~~ 179 (208)
+..|+++| |+||||+||+||+|+++|+|||++|++|.+ +| +.|+ +++||+++..+
T Consensus 40 ~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~- 118 (324)
T 1w85_B 40 TEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPF- 118 (324)
T ss_dssp TTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEE-
T ss_pred HHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEec-
Confidence 35677899 999999999999999999999999985443 55 3576 79999999885
Q ss_pred CccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 180 GVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 180 G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
|. .+.+|+||+. ||+++||++|||+|+
T Consensus 119 g~-~~~~g~~hs~-~~~a~~~~iP~l~V~ 145 (324)
T 1w85_B 119 GG-GVHTPELHSD-SLEGLVAQQPGLKVV 145 (324)
T ss_dssp CS-SSCCCTTSSC-CCHHHHTTSTTCEEE
T ss_pred cC-CCCCCCcccc-cHHHHHccCCCCEEE
Confidence 44 4777888877 999999999999985
No 23
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=99.70 E-value=9.4e-18 Score=169.48 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=65.1
Q ss_pred cc-cCCCcceeeccccccHHHHHHHHHhCCCc--ccE-----------------EE-ec---cccCCCcEEEEecCCccc
Q psy10436 128 LK-AYPDRYIECFIAEQNLVGVAIGAACRNRT--VPF-----------------IR-MG---AISQTNVNFVGSHCGVSI 183 (208)
Q Consensus 128 ~~-~~P~r~~~~GIaE~~mv~~AaGlA~~G~~--~~~-----------------ir-~~---a~~~~~v~~v~~~~G~~~ 183 (208)
.+ .+|+||+|+||+||+++|+|+|||+.|++ ++| ++ .. +++++||+++..|+| .
T Consensus 823 ~~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~--~ 900 (1113)
T 2xt6_A 823 TPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH--E 900 (1113)
T ss_dssp CBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC--S
T ss_pred chhcCCcEEEECCCCHHHHHHHHHHHHhcCCCCceEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCC--C
Confidence 44 57999999999999999999999999954 333 11 12 256899999999988 4
Q ss_pred cCCCCCCCC--hhHHHHhccCCCceeC
Q psy10436 184 GEDGPSQMA--LEDIAMFRTIPACLVF 208 (208)
Q Consensus 184 g~dG~TH~~--ieDia~~r~lPn~~V~ 208 (208)
| +|+||++ +|++..|+++|||+|+
T Consensus 901 G-~G~~Hs~~~~E~~l~l~~~pnm~V~ 926 (1113)
T 2xt6_A 901 G-QGPDHTSGRIERFLQLWAEGSMTIA 926 (1113)
T ss_dssp S-SCTTSSCCCHHHHHHHCCTTSCEEE
T ss_pred C-CChhhhcccHHHHHhcCCCCCcEEE
Confidence 6 9999998 8989899999999985
No 24
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=99.69 E-value=1.1e-17 Score=148.03 Aligned_cols=82 Identities=21% Similarity=0.211 Sum_probs=68.7
Q ss_pred cccccccC-CCcceeeccccccHHHHHHHHHhCCCcccE--------------EE-eccc--------cCCCcEEEEecC
Q psy10436 124 SADVLKAY-PDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IR-MGAI--------SQTNVNFVGSHC 179 (208)
Q Consensus 124 l~~f~~~~-P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir-~~a~--------~~~~v~~v~~~~ 179 (208)
+..|+++| |+||||+||+||+|+++|+|||++|++|.+ +| ++|+ +++|++++.++
T Consensus 41 ~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~- 119 (324)
T 1umd_B 41 TEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPS- 119 (324)
T ss_dssp TTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEE-
T ss_pred hHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcC-
Confidence 35677899 999999999999999999999999985433 44 3465 79999999985
Q ss_pred CccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436 180 GVSIGEDGPSQMALEDIAMFRTIPACLVF 208 (208)
Q Consensus 180 G~~~g~dG~TH~~ieDia~~r~lPn~~V~ 208 (208)
|. .+.+|+||+. ||+++||++|||+|+
T Consensus 120 g~-~~~~g~~hs~-~~~a~~~~iP~~~V~ 146 (324)
T 1umd_B 120 GG-GVRGGHHHSQ-SPEAHFVHTAGLKVV 146 (324)
T ss_dssp CS-SSSCGGGSSC-CCHHHHHTSTTCEEE
T ss_pred CC-CCCCCCccch-hHHHHHhcCCCCEEE
Confidence 54 4677888877 999999999999985
No 25
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=97.85 E-value=2.1e-06 Score=77.10 Aligned_cols=81 Identities=11% Similarity=-0.048 Sum_probs=61.1
Q ss_pred ccccCCCCCCCCCcchHHHHHhh--------------hHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc---CC
Q psy10436 28 NIKLSSPPSYKKGELVATRLAYG--------------IGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ---VK 90 (208)
Q Consensus 28 ~~~~~~A~~~kLdNLi~i~D~~G--------------~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~---~~ 90 (208)
+|++++|.+++++ ++.+++.++ +...+++++||.++.|||+|. .++.+|++.+.+ ..
T Consensus 184 ~Eal~~A~~~~lp-vi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~-----~av~~a~~~A~~~a~~~ 257 (367)
T 1umd_A 184 YAGINFAAVQGAP-AVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDV-----LASYYVVKEAVERARRG 257 (367)
T ss_dssp HHHHHHHHHTTCS-EEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCH-----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcC-EEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCH-----HHHHHHHHHHHHHHHhc
Confidence 3446688889987 666654221 235789999999999999998 777777776653 34
Q ss_pred CCCEEEEEEeecCCCCCccCCCcc
Q psy10436 91 GKPTALIAKTFKGKDFPNIEDKEE 114 (208)
Q Consensus 91 ~kP~vIi~~T~KG~G~~~~e~~~~ 114 (208)
++|++|++.|.+++|.+...++..
T Consensus 258 ~gP~lIe~~t~r~~Ghs~~D~~~~ 281 (367)
T 1umd_A 258 EGPSLVELRVYRYGPHSSADDDSR 281 (367)
T ss_dssp CCCEEEEEECCCCSCSSTTCCGGG
T ss_pred CCCEEEEEEeecCCCCCCCCCccc
Confidence 689999999999999988765433
No 26
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=97.58 E-value=0.00012 Score=66.72 Aligned_cols=80 Identities=11% Similarity=0.078 Sum_probs=61.7
Q ss_pred ccccCCCCCCCCCcchHHHHH------------h---hhHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc---C
Q psy10436 28 NIKLSSPPSYKKGELVATRLA------------Y---GIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ---V 89 (208)
Q Consensus 28 ~~~~~~A~~~kLdNLi~i~D~------------~---G~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~---~ 89 (208)
++.+.+|..|+|. ++.+++. . .+...+++++||.++.|||||+ +++.+|++.+.+ .
T Consensus 221 ~Eal~~A~~~~lp-vi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~-----~av~~a~~~A~~~ar~ 294 (407)
T 1qs0_A 221 HTALTFAHVYRAP-VILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDF-----VAVYAASRWAAERARR 294 (407)
T ss_dssp HHHHHHHHHHTCC-EEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCH-----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCcC-EEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCH-----HHHHHHHHHHHHHHHh
Confidence 3455678888887 5544431 1 1245789999999999999998 888888888864 3
Q ss_pred CCCCEEEEEEeecCCCCCccCCCc
Q psy10436 90 KGKPTALIAKTFKGKDFPNIEDKE 113 (208)
Q Consensus 90 ~~kP~vIi~~T~KG~G~~~~e~~~ 113 (208)
.++|++|.+.|.+++|.+..++..
T Consensus 295 ~~gP~lIe~~t~R~~Ghs~~Dd~~ 318 (407)
T 1qs0_A 295 GLGPSLIEWVTYRAGPHSTSDDPS 318 (407)
T ss_dssp TSCCEEEEEECCCCSCSSTTCCGG
T ss_pred cCCCEEEEEEeeccCCcCCCCCcc
Confidence 578999999999999999887543
No 27
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=97.56 E-value=9.8e-06 Score=73.00 Aligned_cols=77 Identities=14% Similarity=0.045 Sum_probs=59.9
Q ss_pred ccccCCCCCCCCCcchHHHHHhh--------------hHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc---CC
Q psy10436 28 NIKLSSPPSYKKGELVATRLAYG--------------IGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ---VK 90 (208)
Q Consensus 28 ~~~~~~A~~~kLdNLi~i~D~~G--------------~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~---~~ 90 (208)
+|++.+|..++| +++.+++.++ +...+++++||.++.|||||+ +++.+|++.+.+ ..
T Consensus 182 ~Eal~~A~~~~l-pvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~-----~av~~a~~~A~~~~r~~ 255 (368)
T 1w85_A 182 YEGINFAGAFKA-PAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDP-----LAVYAAVKAARERAING 255 (368)
T ss_dssp HHHHHHHHHTTC-CEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCH-----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCc-CEEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEEcCCCH-----HHHHHHHHHHHHHHHhc
Confidence 345668888888 4555554211 245789999999999999998 899999998875 34
Q ss_pred CCCEEEEEEeecCCCCC-ccC
Q psy10436 91 GKPTALIAKTFKGKDFP-NIE 110 (208)
Q Consensus 91 ~kP~vIi~~T~KG~G~~-~~e 110 (208)
++|++|.+.|.+.+|-. ...
T Consensus 256 ~gP~lIe~~t~r~~gHs~~~D 276 (368)
T 1w85_A 256 EGPTLIETLCFRYGPHTMSGD 276 (368)
T ss_dssp SCCEEEEEECCCSSCSCSSCC
T ss_pred CCCEEEEEEeeccCCCCCCCC
Confidence 68999999999999987 544
No 28
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=97.55 E-value=6.2e-06 Score=75.05 Aligned_cols=76 Identities=14% Similarity=0.080 Sum_probs=57.9
Q ss_pred CcCc--cccCCCCCCCCCcchHHHHHhh--------------hHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc
Q psy10436 25 DISN--IKLSSPPSYKKGELVATRLAYG--------------IGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ 88 (208)
Q Consensus 25 d~~~--~~~~~A~~~kLdNLi~i~D~~G--------------~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~ 88 (208)
.++. +++++|++++| +++.+++.++ +...+++++||.++.|||||+ +++.+|+++|.+
T Consensus 197 ~~G~~~Eal~~A~~~~l-pvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~-----~av~~a~~~A~~ 270 (400)
T 2bfd_A 197 SEGDAHAGFNFAATLEC-PIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDV-----FAVYNATKEARR 270 (400)
T ss_dssp GSHHHHHHHHHHHHTTC-CEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCH-----HHHHHHHHHHHH
T ss_pred hcChHHHHHHHHHHHCc-CEEEEEECCceeeeecccccCCCCCHHHHHHHcCCcEEEEeCCCH-----HHHHHHHHHHHH
Confidence 4444 77779999999 7777765322 245789999999999999998 899999988875
Q ss_pred ---CCCCCEEEEEEeecCCCC
Q psy10436 89 ---VKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 89 ---~~~kP~vIi~~T~KG~G~ 106 (208)
..++|++|.+.|.+-.|-
T Consensus 271 ~ar~~~~P~lIe~~tyR~~gH 291 (400)
T 2bfd_A 271 RAVAENQPFLIEAMTYRIGHA 291 (400)
T ss_dssp HHHHHTCCEEEEEECCCCC--
T ss_pred HHHhCCCCEEEEEEeeeeCCC
Confidence 346899999999543333
No 29
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=95.39 E-value=0.024 Score=50.81 Aligned_cols=75 Identities=11% Similarity=-0.034 Sum_probs=54.1
Q ss_pred ccccCCCCCCCCCcchHHHHHhh-------------hHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc---CCC
Q psy10436 28 NIKLSSPPSYKKGELVATRLAYG-------------IGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ---VKG 91 (208)
Q Consensus 28 ~~~~~~A~~~kLdNLi~i~D~~G-------------~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~---~~~ 91 (208)
+|.+.+|+.++|. ++.+++.++ ....+ +++|+..+.|||||+ +++.+|+++|.+ ..+
T Consensus 180 ~Ealn~A~~~~lp-vi~vv~NN~~g~~t~~~~~~~~~~~~~-ra~g~p~~~VdG~D~-----~av~~a~~~A~~~~r~~~ 252 (365)
T 2ozl_A 180 FEAYNMAALWKLP-CIFICENNRYGMGTSVERAAASTDYYK-RGDFIPGLRVDGMDI-----LCVREATRFAAAYCRSGK 252 (365)
T ss_dssp HHHHHHHHHTTCC-EEEEEEECSEETTEEHHHHCSCCCGGG-TTTTSCEEEEETTCH-----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCcC-EEEEEECCCcccCCCcccccCCCCHHH-HhCCCCEEEEeCCCH-----HHHHHHHHHHHHHHHhCC
Confidence 3456688888885 444443111 00111 588999999999998 899999888764 346
Q ss_pred CCEEEEEEeecCCCCCcc
Q psy10436 92 KPTALIAKTFKGKDFPNI 109 (208)
Q Consensus 92 kP~vIi~~T~KG~G~~~~ 109 (208)
+|++|.+.|.+..|-...
T Consensus 253 gP~lIe~~t~R~~gHs~~ 270 (365)
T 2ozl_A 253 GPILMELQTYRYHGHEMS 270 (365)
T ss_dssp CCEEEEEECCCSSCSSTT
T ss_pred CCEEEEEEeecCCCCCCC
Confidence 899999999999997654
No 30
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=92.86 E-value=0.21 Score=46.88 Aligned_cols=60 Identities=10% Similarity=0.092 Sum_probs=45.4
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc-CCCCCEEEEEEeecCCCCCccCCCccccCC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ-VKGKPTALIAKTFKGKDFPNIEDKEEWHGK 118 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~-~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~ 118 (208)
...+.+++|+.++.|+ +. ++|.++++++.. ..++|++|.+.|..++.++........|+.
T Consensus 502 ~~~~a~a~G~~~~~v~--~~-----~~l~~al~~a~~~~~~gP~lIev~~~~~~~~~~~~~~~~~~~~ 562 (603)
T 4feg_A 502 FSKIADGVHMQAFRVN--KI-----EQLPDVFEQAKAIAQHEPVLIDAVITGDRPLPAEKLRLDSAMS 562 (603)
T ss_dssp HHHHHHHTTCEEEEEC--BG-----GGHHHHHHHHHHHTTTSCEEEEEECCCCCCCCTTSCCCCTTTS
T ss_pred HHHHHHHCCCeEEEEC--CH-----HHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCCcccchhhhhhh
Confidence 4578899999999886 34 678889998872 346899999999777777765555555553
No 31
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=92.00 E-value=0.4 Score=44.76 Aligned_cols=48 Identities=17% Similarity=0.048 Sum_probs=40.4
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFP 107 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~ 107 (208)
....+++||++++.|+ +. ++|.++|+++.+. ++|++|.+.|.+++.+.
T Consensus 516 ~~~~a~a~G~~~~~v~--~~-----~el~~al~~a~~~-~gp~liev~~~~~~~~~ 563 (590)
T 1ybh_A 516 MLLFAAACGIPAARVT--KK-----ADLREAIQTMLDT-PGPYLLDVICPHQEHVL 563 (590)
T ss_dssp HHHHHHHTTCCEEEEC--BH-----HHHHHHHHHHHHS-SSCEEEEEECCTTCCCC
T ss_pred HHHHHHHcCCeEEEeC--CH-----HHHHHHHHHHHhC-CCCEEEEEEecCCcccC
Confidence 4567899999999884 44 8899999998865 68999999999998763
No 32
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=89.39 E-value=0.22 Score=44.63 Aligned_cols=51 Identities=20% Similarity=0.129 Sum_probs=35.2
Q ss_pred cCCCcceeeccccccHHHHHHHHHhCCCcccE-------------EEeccccCCCcEEEEecCCc
Q psy10436 130 AYPDRYIECFIAEQNLVGVAIGAACRNRTVPF-------------IRMGAISQTNVNFVGSHCGV 181 (208)
Q Consensus 130 ~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~-------------ir~~a~~~~~v~~v~~~~G~ 181 (208)
++..+|+.+. .|+.++++|.|.|+.|.++.. +...+..++|+.++....+.
T Consensus 62 ~~g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~~ts~~G~~~~~d~l~~aa~~~~P~Vi~~~~~~~ 125 (395)
T 1yd7_A 62 LVDGVVIQME-DEIASIAAAIGASWAGAKAMTATSGPGFSLMQENIGYAVMTETPVVIVDVQRSG 125 (395)
T ss_dssp GGTCEEEECS-CHHHHHHHHHHHHHTTCCEEEEEETTHHHHHTTTCC----CCCCEEEEEEC---
T ss_pred hcCcEEEEeC-CHHHHHHHHHHHHHhCCcEEEEeCchHHHHHHHHHHHHHhcCCCEEEEEeeCCC
Confidence 4556788888 999999999999999997443 44456678998877665544
No 33
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=88.26 E-value=0.26 Score=45.83 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=37.2
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKD 105 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G 105 (208)
.....++||++++.++ +. ++|.++|+++.+ .++|++|.+.|.++..
T Consensus 501 ~~~~a~a~G~~~~~v~--~~-----~el~~al~~a~~-~~gp~liev~~~~~~~ 546 (566)
T 1ozh_A 501 FKAYAESFGAKGFAVE--SA-----EALEPTLRAAMD-VDGPAVVAIPVDYRDN 546 (566)
T ss_dssp HHHHHHTTTSEEEECC--SG-----GGHHHHHHHHHH-SSSCEEEEEEBCCTTH
T ss_pred HHHHHHHcCCeEEEeC--CH-----HHHHHHHHHHHh-CCCCEEEEEEeCCCcC
Confidence 4578899999998875 44 778899988875 4689999999998753
No 34
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=86.63 E-value=1.2 Score=42.49 Aligned_cols=48 Identities=13% Similarity=0.066 Sum_probs=40.3
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFP 107 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~ 107 (208)
.....++||++++.|+ +. ++|.++|+++... ++|++|.+.|.+++.+.
T Consensus 595 ~~~la~a~G~~~~~v~--~~-----~el~~al~~a~~~-~gp~lIev~~~~~~~~~ 642 (677)
T 1t9b_A 595 FIKLAEAMGLKGLRVK--KQ-----EELDAKLKEFVST-KGPVLLEVEVDKKVPVL 642 (677)
T ss_dssp HHHHHHHTTCEEEEEC--SH-----HHHHHHHHHHHHC-SSCEEEEEEBCSSCCCS
T ss_pred HHHHHHHcCCeEEEEC--CH-----HHHHHHHHHHHHC-CCcEEEEEEecCCcccC
Confidence 4578899999999884 44 8999999998764 68999999999998763
No 35
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=85.12 E-value=1.2 Score=40.84 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=35.8
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKG 103 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG 103 (208)
.....++||++++.|++. ++|.++|+++.+. ++|++|.+.|.+.
T Consensus 483 ~~~~a~a~G~~~~~v~~~-------~~l~~al~~a~~~-~gp~liev~~~~~ 526 (528)
T 1q6z_A 483 FRALAKGYGVQALKADNL-------EQLKGSLQEALSA-KGPVLIEVSTVSP 526 (528)
T ss_dssp HHHHHHHHTCEEEEESSH-------HHHHHHHHHHHTC-SSCEEEEEEBCC-
T ss_pred HHHHHHHcCCeEEEeCCH-------HHHHHHHHHHHHC-CCcEEEEEEecCC
Confidence 456889999999988643 7899999998764 6899999999763
No 36
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=84.07 E-value=0.92 Score=42.49 Aligned_cols=48 Identities=10% Similarity=0.098 Sum_probs=37.6
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhc---CCCCCEEEEEEeecCCCC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQ---VKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~---~~~kP~vIi~~T~KG~G~ 106 (208)
....+++||++++.|+ +. ++|.++|+++.+ ..++|++|.+.|.+++-+
T Consensus 534 ~~~~a~a~G~~~~~v~--~~-----~el~~al~~a~~~~~~~~gp~lIev~~~~~~~~ 584 (616)
T 2pan_A 534 HVKVAEGLGCKAIRVF--KP-----EDIAPAFEQAKALMAQYRVPVVVEVILERVTNI 584 (616)
T ss_dssp HHHHHHHTTCEEEEEC--SG-----GGHHHHHHHHHHHHHHHCSCEEEEEEBCSCCCC
T ss_pred HHHHHHHcCCeEEEEC--CH-----HHHHHHHHHHHhhcccCCCcEEEEEEecccccC
Confidence 4578899999999885 44 678888887765 136899999999998843
No 37
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=83.99 E-value=1.3 Score=41.14 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=36.3
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeec
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFK 102 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~K 102 (208)
....+++||++++.|+ +. ++|.++|+++.+ .++|++|.+.|.+
T Consensus 519 ~~~~a~a~G~~~~~v~--~~-----~~l~~al~~a~~-~~gp~liev~~~~ 561 (573)
T 2iht_A 519 FVALAEANGVDATRAT--NR-----EELLAALRKGAE-LGRPFLIEVPVNY 561 (573)
T ss_dssp HHHHHHHTTCEEEECC--SH-----HHHHHHHHHHHT-SSSCEEEEEEBCC
T ss_pred HHHHHHHcCCeEEEeC--CH-----HHHHHHHHHHHh-CCCCEEEEEECCC
Confidence 4568899999998874 44 889999999886 4689999999998
No 38
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=82.35 E-value=1 Score=41.98 Aligned_cols=73 Identities=11% Similarity=0.001 Sum_probs=51.3
Q ss_pred cccCCCCCCCCCcchHHHHHhh-----------------------hHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHH
Q psy10436 29 IKLSSPPSYKKGELVATRLAYG-----------------------IGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHE 85 (208)
Q Consensus 29 ~~~~~A~~~kLdNLi~i~D~~G-----------------------~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ 85 (208)
+.+..|.+++++.++++.+..+ +.....++||++++.|+. . ++|.++|++
T Consensus 459 ~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~-----~el~~al~~ 531 (589)
T 2pgn_A 459 NEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFGQNNWTEFMNPDWVGIAKAFGAYGESVRE--T-----GDIAGALQR 531 (589)
T ss_dssp GGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHHHTCEEEECTT--T-----CCHHHHHHH
T ss_pred HHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcCCCccccCCCCCHHHHHHHCCCeEEEECC--H-----HHHHHHHHH
Confidence 4555677778765555544110 235678999999988753 3 567788887
Q ss_pred hhcCCCCCEEEEEEeecCCCCCcc
Q psy10436 86 ASQVKGKPTALIAKTFKGKDFPNI 109 (208)
Q Consensus 86 ak~~~~kP~vIi~~T~KG~G~~~~ 109 (208)
+.+ .++|++|.+.|.++.+++..
T Consensus 532 a~~-~~gp~liev~~~~~~~~~~~ 554 (589)
T 2pgn_A 532 AID-SGKPALIEIPVSKTQGLASD 554 (589)
T ss_dssp HHH-HCSCEEEEEECCSSSSTTTC
T ss_pred HHh-CCCCEEEEEEecCCCCcCcc
Confidence 765 36899999999999887543
No 39
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=81.35 E-value=2.1 Score=39.48 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=35.9
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeec
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFK 102 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~K 102 (208)
.....++||++++.++ +. ++|.++|+++.+ .++|++|.+.|.+
T Consensus 504 ~~~~a~a~G~~~~~v~--~~-----~~l~~al~~a~~-~~gp~liev~~~~ 546 (563)
T 2uz1_A 504 YHGVAAAFGADGYHVD--SV-----ESFSAALAQALA-HNRPACINVAVAL 546 (563)
T ss_dssp HHHHHHHTTCEEEEEC--SH-----HHHHHHHHHHHH-SSSCEEEEEECCS
T ss_pred HHHHHHHcCCeEEEeC--CH-----HHHHHHHHHHHH-CCCCEEEEEEecc
Confidence 4578899999999884 44 889999999876 4689999999984
No 40
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=80.40 E-value=2 Score=40.12 Aligned_cols=47 Identities=11% Similarity=0.134 Sum_probs=38.1
Q ss_pred hHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcC--CCCCEEEEEEeecCC
Q psy10436 51 IGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQV--KGKPTALIAKTFKGK 104 (208)
Q Consensus 51 ~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~--~~kP~vIi~~T~KG~ 104 (208)
+.....++||++++.|+ +. ++|.++|+++.+. +++|++|.+.|.++.
T Consensus 493 d~~~~a~a~G~~~~~v~--~~-----~el~~al~~a~~~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 493 DYAKIAEAQGAKGFTVS--RI-----EDMDRVMAEAVAANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp CHHHHHHHTTSEEEEEC--BH-----HHHHHHHHHHHHHHHTTCCEEEEEECCSCC
T ss_pred CHHHHHHHcCCEEEEEC--CH-----HHHHHHHHHHHHhcCCCCCEEEEEEecccc
Confidence 35678899999999885 34 7888888887654 268999999999987
No 41
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=78.76 E-value=2.1 Score=39.55 Aligned_cols=71 Identities=13% Similarity=0.028 Sum_probs=51.5
Q ss_pred cccCCCCCCCCCcchHHHHHhh------------------hHHHHHHhcCC-----eEEEEcCCCCCCchHHHHHHHHHH
Q psy10436 29 IKLSSPPSYKKGELVATRLAYG------------------IGLAKLAASNS-----RVIALDGDTKNSTFSDKLKKAFHE 85 (208)
Q Consensus 29 ~~~~~A~~~kLdNLi~i~D~~G------------------~~~~k~~a~G~-----~vi~VDGhd~~~~~~~~l~~Al~~ 85 (208)
+.+..|.+++++.++++.+..+ +.....++||+ .++.|+ +. ++|.++|++
T Consensus 444 ~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~-----~el~~al~~ 516 (566)
T 2vbi_A 444 QEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYIKNWDYAGLMEVFNAGEGHGLGLKAT--TP-----KELTEAIAR 516 (566)
T ss_dssp GGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCCCCCCTTTHHHHHHTTTCCCEEEEEC--SH-----HHHHHHHHH
T ss_pred HHHHHHHHhCCCcEEEEEECCcceEEEeeccCCccCCCCCCHHHHHHHcCCCCCCccEEEeC--CH-----HHHHHHHHH
Confidence 3455667777776666554211 23467899999 888885 44 889999999
Q ss_pred hhcCCCCCEEEEEEeecCCCC
Q psy10436 86 ASQVKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 86 ak~~~~kP~vIi~~T~KG~G~ 106 (208)
+.+..++|++|.+.|.+....
T Consensus 517 a~~~~~gp~liev~~~~~~~~ 537 (566)
T 2vbi_A 517 AKANTRGPTLIECQIDRTDCT 537 (566)
T ss_dssp HHHCCSSCEEEEEECCTTCCC
T ss_pred HHhcCCCcEEEEEEeCcccCc
Confidence 987546899999999987554
No 42
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=77.52 E-value=2.6 Score=38.98 Aligned_cols=48 Identities=15% Similarity=0.021 Sum_probs=38.5
Q ss_pred HHHHHHhcCC---------eEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCC
Q psy10436 52 GLAKLAASNS---------RVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 52 ~~~k~~a~G~---------~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~ 106 (208)
.....++||+ .++.++ +. ++|.++|+++.+..++|++|.+.|.++...
T Consensus 489 ~~~~a~a~G~~~~~~~~~~~~~~v~--~~-----~el~~al~~a~~~~~gp~liev~~~~~~~~ 545 (568)
T 2wvg_A 489 YAGLMEVFNGNGGYDSGAGKGLKAK--TG-----GELAEAIKVALANTDGPTLIECFIGREDCT 545 (568)
T ss_dssp HHHHHHHHHCTTSSSCCCCEEEEES--BH-----HHHHHHHHHHHHCCSSCEEEEEECCTTCCC
T ss_pred HHHHHHHhCCCcccccCCcceEEeC--CH-----HHHHHHHHHHHhcCCCcEEEEEEcCccccC
Confidence 4578899999 787774 44 889999999876546899999999987543
No 43
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=76.19 E-value=2.1 Score=39.81 Aligned_cols=57 Identities=19% Similarity=0.088 Sum_probs=32.9
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCcccc
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWH 116 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H 116 (208)
.....++||+.++.|+ +. ++|.++|+++.+ .++|++|.+.|-+-..+......+..|
T Consensus 518 ~~~~a~a~G~~~~~v~--~~-----~el~~al~~a~~-~~gp~liev~~~~~~~~~~~~~~~~~~ 574 (578)
T 3lq1_A 518 FRFAAAFYDADYHEAK--SV-----DELEEAIDKASY-HKGLDIIEVKTNRHENKANHQALEGHH 574 (578)
T ss_dssp THHHHHHTTCEEEECC--SH-----HHHHHHHHHHTT-SSSEEEEEEC-----------------
T ss_pred HHHHHHHcCCceEecC--CH-----HHHHHHHHHHHh-CCCCEEEEEECCccccHHHHHhhhccc
Confidence 4567799999988774 44 889999999876 468999999998877665554444433
No 44
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=74.94 E-value=3.8 Score=37.72 Aligned_cols=47 Identities=13% Similarity=0.044 Sum_probs=37.6
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~ 106 (208)
.....++||++++.++ +. ++|.++|+++.+. ++|++|.+.|.+-...
T Consensus 487 ~~~~a~a~G~~~~~v~--~~-----~~l~~al~~a~~~-~gp~liev~~~~~~~~ 533 (549)
T 3eya_A 487 FARIAEACGITGIRVE--KA-----SEVDEALQRAFSI-DGPVLVDVVVAKEELA 533 (549)
T ss_dssp HHHHHHHTTSEEEEEC--SG-----GGHHHHHHHHHHS-SSCEEEEEEBCCCCSC
T ss_pred HHHHHHHcCCcEEEeC--CH-----HHHHHHHHHHHhC-CCCEEEEEEecccccc
Confidence 4577899999998884 44 7788999988765 6899999999876543
No 45
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=74.73 E-value=1.6 Score=40.20 Aligned_cols=68 Identities=10% Similarity=-0.034 Sum_probs=47.9
Q ss_pred ccCCCCCCCCCcchHHHHHh---------h-----------hHHHHHHhcCCe---EEEEcCCCCCCchHHHHHHHHH-H
Q psy10436 30 KLSSPPSYKKGELVATRLAY---------G-----------IGLAKLAASNSR---VIALDGDTKNSTFSDKLKKAFH-E 85 (208)
Q Consensus 30 ~~~~A~~~kLdNLi~i~D~~---------G-----------~~~~k~~a~G~~---vi~VDGhd~~~~~~~~l~~Al~-~ 85 (208)
.+..|.+++++.++++.+.. + +.....++||++ ++.|+ +. ++|.++|+ +
T Consensus 453 el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~v~--~~-----~el~~al~~~ 525 (563)
T 2vk8_A 453 EISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVA--TT-----GEWDKLTQDK 525 (563)
T ss_dssp GHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGHHHHTTCSSEEEEEEC--BH-----HHHHHHHTCT
T ss_pred HHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCcccCCCCCHHHHHHHhCCCCCcEEEec--CH-----HHHHHHHHHH
Confidence 34456677776655554411 0 234688999998 77776 34 88999998 7
Q ss_pred hhcCCCCCEEEEEEeecCC
Q psy10436 86 ASQVKGKPTALIAKTFKGK 104 (208)
Q Consensus 86 ak~~~~kP~vIi~~T~KG~ 104 (208)
+....++|++|.+.|.+..
T Consensus 526 a~~~~~~p~liev~~~~~~ 544 (563)
T 2vk8_A 526 SFNDNSKIRMIEVMLPVFD 544 (563)
T ss_dssp TTTSCSSEEEEEEECCTTC
T ss_pred HHhCCCCcEEEEEEeCccc
Confidence 7665568999999998753
No 46
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=73.90 E-value=4.5 Score=37.32 Aligned_cols=48 Identities=23% Similarity=0.146 Sum_probs=38.7
Q ss_pred hHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCC
Q psy10436 51 IGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 51 ~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~ 106 (208)
+.....++||++++.|+ +. ++|.++|+++.. .++|++|.+.|.+....
T Consensus 504 d~~~~a~a~G~~~~~v~--~~-----~el~~al~~a~~-~~~p~liev~~~~~~~~ 551 (568)
T 2c31_A 504 RYDMMMEAFGGKGYVAN--TP-----AELKAALEEAVA-SGKPCLINAMIDPDAGV 551 (568)
T ss_dssp CHHHHHHTTTCEEEEES--SH-----HHHHHHHHHHHH-HTSCEEEEEEBCTTSSC
T ss_pred CHHHHHHHcCCeEEEeC--CH-----HHHHHHHHHHHh-CCCCEEEEEEeccccCC
Confidence 45678899999999885 44 889999998875 36899999999987543
No 47
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=69.31 E-value=4 Score=37.67 Aligned_cols=68 Identities=10% Similarity=-0.087 Sum_probs=46.9
Q ss_pred ccCCCCCCCCCcchHHHHHhh--------------------hHHHHHHhcCCe-----EEEEcCCCCCCchHHHHHHHHH
Q psy10436 30 KLSSPPSYKKGELVATRLAYG--------------------IGLAKLAASNSR-----VIALDGDTKNSTFSDKLKKAFH 84 (208)
Q Consensus 30 ~~~~A~~~kLdNLi~i~D~~G--------------------~~~~k~~a~G~~-----vi~VDGhd~~~~~~~~l~~Al~ 84 (208)
.+..|.+++++.++++.|..+ +.....++||++ ++.|+ +. ++|.++|+
T Consensus 461 eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~-----~el~~al~ 533 (570)
T 2vbf_A 461 ELGLSIREKLNPICFIINNDGYTVEREIHGPTQSYNDIPMWNYSKLPETFGATEDRVVSKIVR--TE-----NEFVSVMK 533 (570)
T ss_dssp GHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGHHHHTTCCTTTEEEEEEC--BH-----HHHHHHHH
T ss_pred HHHHHHHcCCCCEEEEEECCchHHHHHHhccCCCccCCCCCCHHHHHHHcCCCcCCcceEEec--CH-----HHHHHHHH
Confidence 345567777766655554110 234688999998 66674 44 89999999
Q ss_pred HhhcCCCCCEEEEEEeecCC
Q psy10436 85 EASQVKGKPTALIAKTFKGK 104 (208)
Q Consensus 85 ~ak~~~~kP~vIi~~T~KG~ 104 (208)
++....++|++|.+.|.+..
T Consensus 534 ~a~~~~~~p~liev~~~~~~ 553 (570)
T 2vbf_A 534 EAQADVNRMYWIELVLEKED 553 (570)
T ss_dssp HHHHCTTSEEEEEEECCTTC
T ss_pred HHHhcCCCcEEEEEEcCccc
Confidence 85333568999999998753
No 48
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=66.81 E-value=11 Score=35.00 Aligned_cols=102 Identities=12% Similarity=0.085 Sum_probs=65.7
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+.+.+++.|-+.+. +-|+.. ..|..+|....
T Consensus 10 l~~~L~~~GV~~vfg~PG~~~-----~~l~~al~~~~------------------------------------------- 41 (589)
T 2pgn_A 10 IVEALEEYGTEQVVGFIGHTS-----HFVADAFSKSH------------------------------------------- 41 (589)
T ss_dssp HHHHHHHTTCCEEEEECSGGG-----HHHHHHHHTST-------------------------------------------
T ss_pred HHHHHHHcCCCEEEEecCCch-----HHHHHHHHhcC-------------------------------------------
Confidence 35788999998765 677765 56777664210
Q ss_pred CCC-cceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChh
Q psy10436 131 YPD-RYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALE 194 (208)
Q Consensus 131 ~P~-r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ie 194 (208)
++ |++ ...-|++++-+|-|+|+...+|.. +..+-+.+.|++++........-..|..||.++
T Consensus 42 -~~i~~v-~~~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q~~d 119 (589)
T 2pgn_A 42 -LGKRVI-NPATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQVP 119 (589)
T ss_dssp -TSTTCB-CCSSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGGCHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSSCCC
T ss_pred -CCCeEE-EeCcHHHHHHHHHHHHHHHCCCEEEEEecCchHHHHHHHHHHHHhcCCCEEEEecCCcccccCCCCcccccC
Confidence 11 233 346799999999999987444543 333345689998887666654322232688887
Q ss_pred HHHHhccCCC
Q psy10436 195 DIAMFRTIPA 204 (208)
Q Consensus 195 Dia~~r~lPn 204 (208)
..+ ++.+-.
T Consensus 120 ~~~-~~~~tk 128 (589)
T 2pgn_A 120 WQS-FTPIAR 128 (589)
T ss_dssp GGG-GTTTSS
T ss_pred hhh-ccccEE
Confidence 777 776543
No 49
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=65.72 E-value=4.6 Score=36.96 Aligned_cols=43 Identities=7% Similarity=0.037 Sum_probs=34.9
Q ss_pred HHHHHhcCC----eEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecC
Q psy10436 53 LAKLAASNS----RVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKG 103 (208)
Q Consensus 53 ~~k~~a~G~----~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG 103 (208)
....++||+ +++.++ +. ++|.++|+++.+ .++|++|.+.|.+.
T Consensus 487 ~~~a~a~G~~~~~~~~~v~--~~-----~~l~~al~~a~~-~~gp~liev~~~~~ 533 (552)
T 1ovm_A 487 THIPQALSLDPQSECWRVS--EA-----EQLADVLEKVAH-HERLSLIEVMLPKA 533 (552)
T ss_dssp GGSTTTSCSSCCEEEEEEC--BH-----HHHHHHHHHHTT-CSSEEEEEEECCTT
T ss_pred HHHHHHhCCCcCCCEEEeC--CH-----HHHHHHHHHHHh-CCCCEEEEEEcCcc
Confidence 456789999 887775 44 889999998876 46899999999975
No 50
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=64.89 E-value=9.5 Score=35.04 Aligned_cols=66 Identities=20% Similarity=0.135 Sum_probs=45.8
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCC-hhHHHHhccC
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMA-LEDIAMFRTI 202 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~-ieDia~~r~l 202 (208)
..-|++++-+|-|.|+...+|.. +..+-+.+.|+.++........-..| .||. ++..++++.+
T Consensus 47 ~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~~~~-~~Q~~~d~~~~~~~~ 125 (563)
T 2uz1_A 47 TRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDETN-TLQAGIDQVAMAAPI 125 (563)
T ss_dssp CSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTTSC-CTTCCCCHHHHHGGG
T ss_pred eCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHHHHHHHHHHhcCCCEEEEeCCCCcccCCch-hhhhhccHHHHhhhh
Confidence 46699999999999987433443 33334568999888777666433333 4888 8888888876
Q ss_pred CCc
Q psy10436 203 PAC 205 (208)
Q Consensus 203 Pn~ 205 (208)
-..
T Consensus 126 tk~ 128 (563)
T 2uz1_A 126 TKW 128 (563)
T ss_dssp CSE
T ss_pred hce
Confidence 543
No 51
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=64.71 E-value=5 Score=36.89 Aligned_cols=47 Identities=19% Similarity=0.082 Sum_probs=37.3
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~ 106 (208)
.....++||++++.++ +. ++|.++|+++.+ .++|++|.+.|.+....
T Consensus 502 ~~~~a~a~G~~~~~v~--~~-----~el~~al~~a~~-~~~p~liev~~~~~~~~ 548 (564)
T 2q28_A 502 YDKLMDAFRGVGYNVT--TT-----DELRHALTTGIQ-SRKPTIINVVIDPAAGT 548 (564)
T ss_dssp GGGGGGGGTCEEEEEC--SH-----HHHHHHHHHHHH-HTSCEEEEEEBCTTSSC
T ss_pred HHHHHHHcCCeEEEeC--CH-----HHHHHHHHHHHh-CCCCEEEEEEeccccCC
Confidence 4567899999998884 44 889999998875 36899999999876443
No 52
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=63.74 E-value=8.6 Score=35.46 Aligned_cols=45 Identities=18% Similarity=0.073 Sum_probs=36.4
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCE-EEEEEeecCC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPT-ALIAKTFKGK 104 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~-vIi~~T~KG~ 104 (208)
.....++||++++.|+ +. ++|.++|+++.+. ++|+ +|.+.|.+..
T Consensus 499 ~~~~a~a~G~~~~~v~--~~-----~el~~al~~a~~~-~gp~~liev~~~~~~ 544 (565)
T 2nxw_A 499 FADMAAGMGGDGVRVR--TR-----AELKAALDKAFAT-RGRFQLIEAMIPRGV 544 (565)
T ss_dssp HHHHTGGGTSEEEEEC--BH-----HHHHHHHHHHHHC-CSSCEEEEEECCTTC
T ss_pred HHHHHHHcCCCEEEeC--CH-----HHHHHHHHHHHhc-CCCeEEEEEEccccc
Confidence 4568899999999885 34 8899999998765 4687 9999998753
No 53
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=62.58 E-value=15 Score=34.09 Aligned_cols=102 Identities=7% Similarity=-0.017 Sum_probs=65.9
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+...+++.|-+++. +-|... ..|..+|...
T Consensus 33 l~~~L~~~GV~~vfg~PG~~~-----~~l~~al~~~-------------------------------------------- 63 (616)
T 2pan_A 33 AMYVLEKEGITTAFGVPGAAI-----NPFYSAMRKH-------------------------------------------- 63 (616)
T ss_dssp HHHHHHHTTCCEEEECCCGGG-----HHHHHHHHHH--------------------------------------------
T ss_pred HHHHHHHCCCCEEEECCCCcc-----HHHHHHHHhc--------------------------------------------
Confidence 35788999998776 566654 5677776532
Q ss_pred CCCcceeeccccccHHHHHHHHHhC-CCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChh
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACR-NRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALE 194 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~-G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ie 194 (208)
|+=-+-...-|++++-+|-|.|+. |.++.. +-.+.+.+.|++++........-..| .+|.++
T Consensus 64 -~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~~~~l~~A~~~~vPlvvItg~~p~~~~~~~-~~Q~~d 141 (616)
T 2pan_A 64 -GGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLHKE-DFQAVD 141 (616)
T ss_dssp -CCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHTSHHHHHHHHHTTCCEEEEEEECCGGGTTTT-CTTCCC
T ss_pred -CCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHHHHHHHHHHHhcCCCEEEEecCCcccccCcc-cccccC
Confidence 111123456799999999999987 444443 33344668998887666554333233 467777
Q ss_pred HHHHhccCCC
Q psy10436 195 DIAMFRTIPA 204 (208)
Q Consensus 195 Dia~~r~lPn 204 (208)
..++++.+-.
T Consensus 142 ~~~~~~~~tk 151 (616)
T 2pan_A 142 IEAIAKPVSK 151 (616)
T ss_dssp HHHHHGGGSS
T ss_pred HHHHHHHHHH
Confidence 7787776543
No 54
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=62.08 E-value=10 Score=35.15 Aligned_cols=67 Identities=10% Similarity=-0.061 Sum_probs=45.8
Q ss_pred eccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccC
Q psy10436 138 CFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTI 202 (208)
Q Consensus 138 ~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~l 202 (208)
...-|++++-+|.|.|+...++.. +..+-+.+.|++++........-..| .+|.++...+++.+
T Consensus 48 ~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N~~~gl~~A~~~~vPll~Itg~~p~~~~g~~-~~Q~~d~~~~~~~~ 126 (590)
T 1v5e_A 48 QVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMD-AFQELNQNPMYDHI 126 (590)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTTTT-CTTCCCCHHHHHTT
T ss_pred eeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHHHHHHHHHHHhcCCCEEEEcCCCCcccCCCC-cccccCHHHHHHhh
Confidence 356699999999999998655554 33334568999888777665332222 47777777888876
Q ss_pred CCc
Q psy10436 203 PAC 205 (208)
Q Consensus 203 Pn~ 205 (208)
-..
T Consensus 127 tk~ 129 (590)
T 1v5e_A 127 AVY 129 (590)
T ss_dssp CSE
T ss_pred ccE
Confidence 543
No 55
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=60.47 E-value=11 Score=34.67 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=65.0
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+.+.+++.|-+.+. +-|+.. ..|..+|..
T Consensus 14 lv~~L~~~GV~~vFg~PG~~~-----~~l~dal~~--------------------------------------------- 43 (556)
T 3hww_A 14 ILEALTRHGVRHICIAPGSRS-----TLLTLAAAE--------------------------------------------- 43 (556)
T ss_dssp HHHHHHTTTCCEEEECCCTTS-----HHHHHHHHH---------------------------------------------
T ss_pred HHHHHHHCCCCEEEEcCCCCc-----HHHHHHHhh---------------------------------------------
Confidence 45889999998765 567765 567776642
Q ss_pred CCC-cceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChh
Q psy10436 131 YPD-RYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALE 194 (208)
Q Consensus 131 ~P~-r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ie 194 (208)
.|+ |++- ..-||+++-+|-|.|+.-.+|.. +-.+-+.+.|++++........-..| .||.++
T Consensus 44 ~~~i~~i~-~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~~~~~~~g~~-~~Q~~d 121 (556)
T 3hww_A 44 NSAFIHHT-HFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCG-ANQAIR 121 (556)
T ss_dssp CTTCEEEE-CSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHHTTHHHHHHHHHHCCCEEEEEEECCGGGSSSS-CTTCCC
T ss_pred CCCceEEE-ecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHHhhhHHHHHHHHhCCCeEEEeCCCCHHHhccC-CCcccc
Confidence 122 2332 44699999999999976333443 33344568999888766555433233 488887
Q ss_pred HHHHhccCC
Q psy10436 195 DIAMFRTIP 203 (208)
Q Consensus 195 Dia~~r~lP 203 (208)
..++++.+-
T Consensus 122 ~~~~~~~~t 130 (556)
T 3hww_A 122 QPGMFASHP 130 (556)
T ss_dssp CTTTTTTCS
T ss_pred HHHHHhhhe
Confidence 777777653
No 56
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=59.31 E-value=15 Score=34.04 Aligned_cols=65 Identities=12% Similarity=-0.023 Sum_probs=43.8
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCC
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIP 203 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lP 203 (208)
..-|++++.+|-|.|+...+|.. +..+-+.+.|++++........-..| .+|.++..++++.+-
T Consensus 56 ~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~g~~-~~Q~~d~~~~~~~~~ 134 (590)
T 1ybh_A 56 PRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTD-AFQETPIVEVTRSIT 134 (590)
T ss_dssp CSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTTTT-CTTCCCHHHHHGGGS
T ss_pred eCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHHHHHHHHHHHhhCCCEEEEeCcCCccccCCC-cccccCHHHHHHHHh
Confidence 45699999999999987333443 33334568998888766655332233 577778888887764
Q ss_pred C
Q psy10436 204 A 204 (208)
Q Consensus 204 n 204 (208)
.
T Consensus 135 k 135 (590)
T 1ybh_A 135 K 135 (590)
T ss_dssp S
T ss_pred C
Confidence 4
No 57
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=58.66 E-value=13 Score=34.21 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=61.7
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+.+.+++.|-+.+. +-|... ..|..+|...
T Consensus 27 lv~~L~~~GV~~vfg~PG~~~-----~~l~~al~~~-------------------------------------------- 57 (565)
T 2nxw_A 27 LLRALKDRGAQAMFGIPGDFA-----LPFFKVAEET-------------------------------------------- 57 (565)
T ss_dssp HHHHHHHTTCCCEEECCCGGG-----HHHHHHHHHH--------------------------------------------
T ss_pred HHHHHHHcCCCEEEECCCcch-----HHHHHHHHhC--------------------------------------------
Confidence 45888999988765 566654 5677766431
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCcc-ccCCCCC-CCC-
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVS-IGEDGPS-QMA- 192 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~-~g~dG~T-H~~- 192 (208)
+.+.+=...-|++++-+|-|.|+...+|.. +-.+-+.+.|++++....... .|.+... ||.
T Consensus 58 -~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q 136 (565)
T 2nxw_A 58 -QILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGR 136 (565)
T ss_dssp -CSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-----
T ss_pred -CCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeecc
Confidence 223344567799999999999987443443 333345689998887665443 2333233 433
Q ss_pred -hh-HHHHhccCC
Q psy10436 193 -LE-DIAMFRTIP 203 (208)
Q Consensus 193 -ie-Dia~~r~lP 203 (208)
++ ...+++.+-
T Consensus 137 ~~d~q~~~~~~~~ 149 (565)
T 2nxw_A 137 TLDTQFQVFKEIT 149 (565)
T ss_dssp --CHHHHHHTTSC
T ss_pred chhhHHHHHHhhh
Confidence 44 467777654
No 58
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=53.66 E-value=21 Score=32.58 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=65.5
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+.+.+++.|-+.+. +-|+.. ..|..+|...+.
T Consensus 9 l~~~L~~~GV~~vfg~PG~~~-----~~l~dal~~~~~------------------------------------------ 41 (549)
T 3eya_A 9 IAKTLESAGVKRIWGVTGDSL-----NGLSDSLNRMGT------------------------------------------ 41 (549)
T ss_dssp HHHHHHHTTCCEEEECCCGGG-----HHHHHHHHHHCS------------------------------------------
T ss_pred HHHHHHHCCCCEEEEcCCCch-----HHHHHHHHhcCC------------------------------------------
Confidence 35788999988765 567654 567777653210
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
=|++ ...-|++++-+|-|.|+...+|.. +-.+-+.+.||+++........-..| .+|.++.
T Consensus 42 --i~~i-~~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~~~gi~~A~~~~vPvl~itg~~~~~~~~~~-~~Q~~d~ 117 (549)
T 3eya_A 42 --IEWM-STRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSG-YFQETHP 117 (549)
T ss_dssp --SEEE-ECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEESCGGGTTSC-CTTCCCH
T ss_pred --CeEE-EeCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhhHHHHHHHHhhCCCEEEEeCCCchhhcCCC-CCCccCH
Confidence 0222 345699999999999976433443 33344568999888766554322222 4677788
Q ss_pred HHHhccCCC
Q psy10436 196 IAMFRTIPA 204 (208)
Q Consensus 196 ia~~r~lPn 204 (208)
.++++.+-.
T Consensus 118 ~~~~~~~tk 126 (549)
T 3eya_A 118 QELFRECSH 126 (549)
T ss_dssp HHHTSTTCS
T ss_pred HHHHhhhhh
Confidence 888887654
No 59
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=53.25 E-value=16 Score=33.72 Aligned_cols=99 Identities=13% Similarity=0.156 Sum_probs=63.2
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+.+.+++.|-+.+. +-|+.. ..|..+|...
T Consensus 17 lv~~L~~~GV~~vFg~PG~~~-----~~l~dal~~~-------------------------------------------- 47 (578)
T 3lq1_A 17 FIEELVQAGVKEAIISPGSRS-----TPLALMMAEH-------------------------------------------- 47 (578)
T ss_dssp HHHHHHHTTCCEEEECCCTTT-----HHHHHHHHHC--------------------------------------------
T ss_pred HHHHHHHcCCCEEEECCCCcc-----HHHHHHHHhC--------------------------------------------
Confidence 45889999998765 567765 5677766531
Q ss_pred CCC-cceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChh
Q psy10436 131 YPD-RYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALE 194 (208)
Q Consensus 131 ~P~-r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ie 194 (208)
|+ |++ ...-||+++-+|-|.|+.-.+|.. +-.+-+.+.|++++........-..| .+|.++
T Consensus 48 -~~i~~i-~~~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~~p~~~~g~~-~~Qe~d 124 (578)
T 3lq1_A 48 -PILKIY-VDVDERSAGFFALGLAKASKRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVG-APQAMD 124 (578)
T ss_dssp -SSCEEE-ECSSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHTTHHHHHHHHHTTCCEEEEEEECCGGGTTSS-CTTCCC
T ss_pred -CCceEE-EecCcHHHHHHHHHHHHhhCCCEEEEECCchhhhhhhHHHHHHHhcCCCeEEEeCCCCHHhhcCC-CCCCcC
Confidence 11 222 334699999999999976443443 33344568999888765544332223 467666
Q ss_pred HHHHhccC
Q psy10436 195 DIAMFRTI 202 (208)
Q Consensus 195 Dia~~r~l 202 (208)
..++++.+
T Consensus 125 ~~~~~~~~ 132 (578)
T 3lq1_A 125 QLHLYGSH 132 (578)
T ss_dssp CTTTTGGG
T ss_pred HhhHHhhh
Confidence 66666654
No 60
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=53.15 E-value=15 Score=33.78 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=41.8
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCC
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIP 203 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lP 203 (208)
..-|++++-+|-|.|+...+|.. +-.+-+.+.|++++........-.. ..||.++..++++.+.
T Consensus 54 ~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l~~A~~~~vPll~itg~~~~~~~~~-~~~Q~~d~~~~~~~~t 132 (566)
T 1ozh_A 54 VRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAK-QVHQSMDTVAMFSPVT 132 (566)
T ss_dssp CSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHHHHHHHHTCCEEEEEEECCTTTC-------CCCHHHHHGGGC
T ss_pred eCCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHHHHHHHHHHhcCCCEEEEeCCCccccCCC-CcccccCHHHHHHHHh
Confidence 46699999999999986333443 3333456899888766655532212 3588888888888765
Q ss_pred Cc
Q psy10436 204 AC 205 (208)
Q Consensus 204 n~ 205 (208)
..
T Consensus 133 k~ 134 (566)
T 1ozh_A 133 KY 134 (566)
T ss_dssp SE
T ss_pred he
Confidence 43
No 61
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=52.97 E-value=4 Score=38.04 Aligned_cols=46 Identities=15% Similarity=0.011 Sum_probs=36.4
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKD 105 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G 105 (208)
.....++||++++.|+ +. ++|.++|+++.. .++|++|.+.|.++..
T Consensus 538 ~~~~a~a~G~~~~~v~--~~-----~el~~al~~a~~-~~gp~liev~~~~~~~ 583 (604)
T 2x7j_A 538 FKHAAALYGGTYSCPA--SW-----DEFKTAYAPQAD-KPGLHLIEIKTDRQSR 583 (604)
T ss_dssp THHHHHHTTCEEECCS--SH-----HHHHHHCCCCCS-SCCEEEEEEECCHHHH
T ss_pred HHHHHHHcCCeEEecC--CH-----HHHHHHHHHHHh-CCCCEEEEEECCcccc
Confidence 4567899999998775 34 889999987765 3689999999987643
No 62
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=52.74 E-value=29 Score=31.73 Aligned_cols=65 Identities=15% Similarity=0.034 Sum_probs=40.9
Q ss_pred ccccccHHHHHHHHHhCCCcccE--------------EEeccccCCCcEEEEecCCccccCCC-CCCCCh------hHHH
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF--------------IRMGAISQTNVNFVGSHCGVSIGEDG-PSQMAL------EDIA 197 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~--------------ir~~a~~~~~v~~v~~~~G~~~g~dG-~TH~~i------eDia 197 (208)
..-|++++.+|-|.|+.....++ +-.+-+.+.|++++........-..| ..||.+ +...
T Consensus 47 ~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~ 126 (566)
T 2vbi_A 47 CCNELNCGFSAEGYARSNGAAAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLE 126 (566)
T ss_dssp CSSHHHHHHHHHHHHHHHSCEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHH
T ss_pred eCcHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHH
Confidence 55699999999999976333232 33334568999888776665433233 245432 3467
Q ss_pred HhccCC
Q psy10436 198 MFRTIP 203 (208)
Q Consensus 198 ~~r~lP 203 (208)
+++.+-
T Consensus 127 ~~~~~t 132 (566)
T 2vbi_A 127 MARQVT 132 (566)
T ss_dssp HHHTTC
T ss_pred HHhhhE
Confidence 777654
No 63
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=52.20 E-value=26 Score=27.09 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=35.8
Q ss_pred HHHhhhHH-HHHHhcCCeEEE--EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCC
Q psy10436 46 RLAYGIGL-AKLAASNSRVIA--LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 46 ~D~~G~~~-~k~~a~G~~vi~--VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~ 106 (208)
+|.+|..+ ..+++.|++|.. +-+||. +.+.++++.+.... +.- ++-|.-|-|.
T Consensus 38 ~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~-----~~i~~al~~~~a~~-~~D--lVittGG~g~ 93 (178)
T 3iwt_A 38 VDESGDIIKQLLIENGHKIIGYSLVPDDK-----IKILKAFTDALSID-EVD--VIISTGGTGY 93 (178)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEEEECSCH-----HHHHHHHHHHHTCT-TCC--EEEEESCCSS
T ss_pred CcchHHHHHHHHHHCCCEEEEEEEeCCCH-----HHHHHHHHHHHhcC-CCC--EEEecCCccc
Confidence 36677655 889999999976 568987 89999998765322 122 3345555543
No 64
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=47.73 E-value=22 Score=33.83 Aligned_cols=65 Identities=11% Similarity=-0.052 Sum_probs=43.9
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCC
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIP 203 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lP 203 (208)
..-|++++-+|-|.|+.-.+|.. +-.+-+.+.||+++........-..| .+|.++..++++.+-
T Consensus 126 ~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~~~gia~A~~d~vPllvItG~~~~~~~g~~-a~Q~~Dq~~i~~~~t 204 (677)
T 1t9b_A 126 PKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTD-AFQEADVVGISRSCT 204 (677)
T ss_dssp CSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHHHHHHHHTCCEEEEEEECCTTTTTSC-CTTCCCHHHHTGGGS
T ss_pred eCChHHHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHHHHHHHcCCCEEEEeCCCChhhcCCC-CccccCHHHHhhhhe
Confidence 46699999999999986433443 33344568999888766555332222 578888888887654
Q ss_pred C
Q psy10436 204 A 204 (208)
Q Consensus 204 n 204 (208)
.
T Consensus 205 k 205 (677)
T 1t9b_A 205 K 205 (677)
T ss_dssp S
T ss_pred e
Confidence 3
No 65
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=46.37 E-value=15 Score=33.79 Aligned_cols=44 Identities=14% Similarity=-0.026 Sum_probs=34.9
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKG 103 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG 103 (208)
.....++||..++.++ +. ++|.++|+++.+. ++|++|.+.|-+.
T Consensus 497 ~~~~a~a~G~~~~~v~--~~-----~~l~~al~~a~~~-~gp~liev~~~~~ 540 (556)
T 3hww_A 497 FEHAAAMFELKYHRPQ--NW-----QELETAFADAWRT-PTTTVIEMVVNDT 540 (556)
T ss_dssp SHHHHHHTTCEEECCS--SH-----HHHHHHHHHHTTS-SSEEEEEEECCSS
T ss_pred HHHHHHHcCCcEEecC--CH-----HHHHHHHHHHHhC-CCCEEEEEECCcc
Confidence 3467789999987764 43 7899999998764 5899999999764
No 66
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=42.74 E-value=27 Score=32.39 Aligned_cols=102 Identities=11% Similarity=0.052 Sum_probs=62.5
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+.+.+++.|-+.+. +-|... ..|..+|...+.
T Consensus 17 l~~~L~~~GV~~vfg~PG~~~-----~~l~dal~~~~~------------------------------------------ 49 (603)
T 4feg_A 17 VIKVLEAWGVDHLYGIPGGSI-----NSIMDALSAERD------------------------------------------ 49 (603)
T ss_dssp HHHHHHHTTCCEEEECCCGGG-----HHHHHHHHHTTT------------------------------------------
T ss_pred HHHHHHHCCCCEEEEeCCCch-----HHHHHHHHhccC------------------------------------------
Confidence 45789999988766 567654 667777653210
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
.=|++ ...-|++++-+|-|.|+...+|.. +-.+-+.+.||+++........-.. ..+|.++.
T Consensus 50 -~i~~i-~~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~~N~~~gia~A~~~~vPvl~itG~~~~~~~~~-~~~Q~~d~ 126 (603)
T 4feg_A 50 -RIHYI-QVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNM-DTFQEMNE 126 (603)
T ss_dssp -TSEEE-ECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTTTTS-CCTTCCCC
T ss_pred -CCeEE-EecChHHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHHHHHHHcCCCEEEEecCCcccccCC-CccccccH
Confidence 00222 345699999999999976443443 3334456899988765544422112 24566666
Q ss_pred HHHhccCC
Q psy10436 196 IAMFRTIP 203 (208)
Q Consensus 196 ia~~r~lP 203 (208)
.++++.+-
T Consensus 127 ~~~~~~~t 134 (603)
T 4feg_A 127 NPIYADVA 134 (603)
T ss_dssp GGGGTTTC
T ss_pred HHHhhhhc
Confidence 67766553
No 67
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=42.68 E-value=29 Score=32.13 Aligned_cols=101 Identities=14% Similarity=0.071 Sum_probs=64.2
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+.+.+++.|-+++. +-|... ..|..+|.....
T Consensus 37 lv~~L~~~GV~~vFg~PG~~~-----~~l~dal~~~~~------------------------------------------ 69 (604)
T 2x7j_A 37 FIDEFALSGITDAVVCPGSRS-----TPLAVLCAAHPD------------------------------------------ 69 (604)
T ss_dssp HHHHHHHHTCCEEEECCCSTT-----HHHHHHHHHCTT------------------------------------------
T ss_pred HHHHHHHcCCCEEEECcCccc-----HHHHHHHHhCCC------------------------------------------
Confidence 45899999999876 567665 667777753110
Q ss_pred CCCcceeeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhH
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieD 195 (208)
=|++ ...-|++++-+|-|.|+...+|.. +-.+-+.+.|++++........-.-| .+|.++.
T Consensus 70 --i~~i-~~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~~~gia~A~~~~vPlv~ItG~~~~~~~g~~-~~Q~~d~ 145 (604)
T 2x7j_A 70 --ISVH-VQIDERSAGFFALGLAKAKQRPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREVG-APQAINQ 145 (604)
T ss_dssp --CEEE-ECSSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGSSSC-CTTCCCC
T ss_pred --ceEE-EecChHHHHHHHHHHHHhhCCCEEEEECChhHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHhCCC-CCCcCcH
Confidence 0222 346699999999999986444543 33334568998888765554322222 4677766
Q ss_pred HHHhccCC
Q psy10436 196 IAMFRTIP 203 (208)
Q Consensus 196 ia~~r~lP 203 (208)
.++++.+-
T Consensus 146 ~~~~~~~t 153 (604)
T 2x7j_A 146 HFLFGNFV 153 (604)
T ss_dssp TTTTGGGS
T ss_pred HHHhhhhe
Confidence 66766553
No 68
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=40.23 E-value=61 Score=25.11 Aligned_cols=55 Identities=7% Similarity=0.061 Sum_probs=38.8
Q ss_pred HHHHHhhhHH-HHHHhcCCeEEE--EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCC
Q psy10436 44 ATRLAYGIGL-AKLAASNSRVIA--LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 44 ~i~D~~G~~~-~k~~a~G~~vi~--VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~ 106 (208)
.++|.++..+ ..+++.|+++.. +-+||. ++|.++++++.+..+ .- ++-|.-|-|.
T Consensus 24 ~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~-----~~i~~~l~~a~~~~~-~D--lVittGG~g~ 81 (172)
T 1mkz_A 24 EEDDTSGHYLRDSAQEAGHHVVDKAIVKENR-----YAIRAQVSAWIASDD-VQ--VVLITGGTGL 81 (172)
T ss_dssp GGGCHHHHHHHHHHHHTTCEEEEEEEECSCH-----HHHHHHHHHHHHSSS-CC--EEEEESCCSS
T ss_pred cccCccHHHHHHHHHHCCCeEeEEEEeCCCH-----HHHHHHHHHHHhcCC-CC--EEEeCCCCCC
Confidence 4678888765 788999999875 568987 999999998865311 11 3346666554
No 69
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=39.96 E-value=83 Score=28.68 Aligned_cols=65 Identities=18% Similarity=0.013 Sum_probs=41.3
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccc-cCCCCCCCCh------hHH
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSI-GEDGPSQMAL------EDI 196 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~-g~dG~TH~~i------eDi 196 (208)
..-|++++-+|-|.|+... |.. +-.+-+.+.|++++........ +.+...||.+ +..
T Consensus 47 ~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~ 125 (568)
T 2wvg_A 47 CCNELNCGFSAEGYARAKG-AAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQL 125 (568)
T ss_dssp CSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHH
T ss_pred cCcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHHHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHH
Confidence 4679999999999997633 433 3334456899988877666543 3332345532 346
Q ss_pred HHhccCCC
Q psy10436 197 AMFRTIPA 204 (208)
Q Consensus 197 a~~r~lPn 204 (208)
.+++.+--
T Consensus 126 ~~~~~~tk 133 (568)
T 2wvg_A 126 EMAKNITA 133 (568)
T ss_dssp HHHTTSCS
T ss_pred HHHHhhEe
Confidence 77776543
No 70
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=38.60 E-value=60 Score=25.00 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=38.2
Q ss_pred HHHHHhhhHH-HHHHhcCCeEEE--EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCC
Q psy10436 44 ATRLAYGIGL-AKLAASNSRVIA--LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 44 ~i~D~~G~~~-~k~~a~G~~vi~--VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~ 106 (208)
.++|.++..+ ..+++.|+++.. +-+||. ++|.++++++.+.. +.- ++-|.-|-|.
T Consensus 27 ~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~-----~~i~~~l~~~~~~~-~~D--lVittGG~g~ 84 (169)
T 1y5e_A 27 EETDKSGQLLHELLKEAGHKVTSYEIVKDDK-----ESIQQAVLAGYHKE-DVD--VVLTNGGTGI 84 (169)
T ss_dssp TTTCHHHHHHHHHHHHHTCEEEEEEEECSSH-----HHHHHHHHHHHTCT-TCS--EEEEECCCSS
T ss_pred eeccChHHHHHHHHHHCCCeEeEEEEeCCCH-----HHHHHHHHHHHhcC-CCC--EEEEcCCCCC
Confidence 4567888765 788999999875 568987 99999999886511 112 2345566554
No 71
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=38.45 E-value=16 Score=33.70 Aligned_cols=67 Identities=10% Similarity=-0.043 Sum_probs=46.7
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCChhHHHHhccCC
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIP 203 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lP 203 (208)
..-|++++-+|-|+|+...+|.. +..+-+.+.|++++........-..+..||.++..++++.+-
T Consensus 54 ~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q~~d~~~~~~~~~ 133 (573)
T 2iht_A 54 TRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMS 133 (573)
T ss_dssp CSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHHHHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGS
T ss_pred eCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHHHHHHHHHHhhCCCEEEEcccCcccccCCcCccccCCHHHHHHhHh
Confidence 46699999999999987444543 334445689998887766553322214689998889988765
Q ss_pred Cc
Q psy10436 204 AC 205 (208)
Q Consensus 204 n~ 205 (208)
..
T Consensus 134 k~ 135 (573)
T 2iht_A 134 KY 135 (573)
T ss_dssp SE
T ss_pred hE
Confidence 43
No 72
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=36.83 E-value=26 Score=32.09 Aligned_cols=65 Identities=11% Similarity=-0.010 Sum_probs=44.0
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccc-cC-CCCCCCChhHHHHhcc
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSI-GE-DGPSQMALEDIAMFRT 201 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~-g~-dG~TH~~ieDia~~r~ 201 (208)
..-|++++-+|-|+|+...+|.. +-.+-+.+.|++++........ +. . ..+|.++..++++.
T Consensus 53 ~~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N~~~~i~~A~~~~vPll~itg~~~~~~~~~~~-~~~Q~~dq~~~~~~ 131 (568)
T 2c31_A 53 FRHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQ-GDYEEMDQMNVARP 131 (568)
T ss_dssp CSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTC-CCTTCCCHHHHSGG
T ss_pred eCcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEccCCCccccCCCC-CcccccCHHHHHHh
Confidence 46799999999999987333443 3344456899988877655532 21 2 25777887888887
Q ss_pred CCC
Q psy10436 202 IPA 204 (208)
Q Consensus 202 lPn 204 (208)
+-.
T Consensus 132 ~tk 134 (568)
T 2c31_A 132 HCK 134 (568)
T ss_dssp GSS
T ss_pred hhh
Confidence 643
No 73
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=35.75 E-value=67 Score=25.15 Aligned_cols=54 Identities=24% Similarity=0.285 Sum_probs=37.0
Q ss_pred HHHHhhhHH-HHHHhcCCeEEE--EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCC
Q psy10436 45 TRLAYGIGL-AKLAASNSRVIA--LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 45 i~D~~G~~~-~k~~a~G~~vi~--VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~ 106 (208)
++|.++..+ ..+++.|+++.. +-.||. ++|.++++++.+..+ .-+|+ |.-|-|+
T Consensus 37 i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~-----~~I~~al~~a~~~~~-~DlVi--ttGG~s~ 93 (178)
T 2pjk_A 37 IVDESGDIIKQLLIENGHKIIGYSLVPDDK-----IKILKAFTDALSIDE-VDVII--STGGTGY 93 (178)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEEECSCH-----HHHHHHHHHHHTCTT-CCEEE--EESCCSS
T ss_pred EeehHHHHHHHHHHHCCCEEEEEEEeCCCH-----HHHHHHHHHHHhcCC-CCEEE--ECCCCCC
Confidence 456677655 789999999875 568887 999999998765311 22333 6666554
No 74
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=35.49 E-value=30 Score=31.58 Aligned_cols=65 Identities=9% Similarity=0.072 Sum_probs=44.4
Q ss_pred ccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccc-cC-CCCCCCChhHHHHhcc
Q psy10436 139 FIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSI-GE-DGPSQMALEDIAMFRT 201 (208)
Q Consensus 139 GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~-g~-dG~TH~~ieDia~~r~ 201 (208)
..-|++++-+|-|.|+...+|.. +-.+-+.+.|++++........ +. . ..+|.++..++++.
T Consensus 51 ~~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~~~gi~~A~~~~vPll~itg~~~~~~~~~~~-~~~Q~~dq~~~~~~ 129 (564)
T 2q28_A 51 FRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQ-GDYEELDQMNAAKP 129 (564)
T ss_dssp CSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTS-CCTTCCCHHHHHGG
T ss_pred eCCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHHHHHHHHHHhcCCCEEEEeCCCCccccCCCC-CccccccHHHHHHH
Confidence 46799999999999988443443 3344456999988877665532 21 2 25787888888887
Q ss_pred CCC
Q psy10436 202 IPA 204 (208)
Q Consensus 202 lPn 204 (208)
+-.
T Consensus 130 ~tk 132 (564)
T 2q28_A 130 YAK 132 (564)
T ss_dssp GSS
T ss_pred hhh
Confidence 643
No 75
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=30.18 E-value=51 Score=30.99 Aligned_cols=49 Identities=65% Similarity=0.915 Sum_probs=37.4
Q ss_pred CCCCCCCCcchHHHHHhhhHHHHHHhcCCeEEEEcCCCCCCchHHHHHH
Q psy10436 33 SPPSYKKGELVATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKK 81 (208)
Q Consensus 33 ~A~~~kLdNLi~i~D~~G~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~ 81 (208)
..+.|..+..+.+|+++++.+.++.+...+++.++.+...+++++.+.+
T Consensus 303 ~~~~~~~~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~~~~~~~ 351 (616)
T 3mos_A 303 SLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKK 351 (616)
T ss_dssp SCCCCCTTCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHSHHHHHH
T ss_pred CCcccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCcchhhHHH
Confidence 3455655566789999999999898899999999888766666555544
No 76
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=28.40 E-value=77 Score=24.96 Aligned_cols=52 Identities=19% Similarity=0.056 Sum_probs=36.4
Q ss_pred HHHHhhhHH-HHHHhcCCeEEE--EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCC
Q psy10436 45 TRLAYGIGL-AKLAASNSRVIA--LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 45 i~D~~G~~~-~k~~a~G~~vi~--VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~ 106 (208)
++|.++..+ ..+++.|+++.. +-+||. ++|.++++++.+..+ ++-|.-|-|.
T Consensus 20 i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~-----~~I~~~l~~a~~~~D-----lVittGG~g~ 74 (172)
T 3kbq_A 20 TVNTNAAFIGNFLTYHGYQVRRGFVVMDDL-----DEIGWAFRVALEVSD-----LVVSSGGLGP 74 (172)
T ss_dssp SCCHHHHHHHHHHHHTTCEEEEEEEECSCH-----HHHHHHHHHHHHHCS-----EEEEESCCSS
T ss_pred EEeHHHHHHHHHHHHCCCEEEEEEEeCCCH-----HHHHHHHHHHHhcCC-----EEEEcCCCcC
Confidence 456666654 788999999875 468987 899999988754322 3336666665
No 77
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=27.89 E-value=47 Score=34.07 Aligned_cols=49 Identities=12% Similarity=-0.027 Sum_probs=37.4
Q ss_pred CcceeeccccccHHHHHHHHHhCCCcccE-------------EEeccccCCCcEEEEecCCc
Q psy10436 133 DRYIECFIAEQNLVGVAIGAACRNRTVPF-------------IRMGAISQTNVNFVGSHCGV 181 (208)
Q Consensus 133 ~r~~~~GIaE~~mv~~AaGlA~~G~~~~~-------------ir~~a~~~~~v~~v~~~~G~ 181 (208)
.+.+.--..|..+++++.|.|..|.++.. ++..+...+|++++....+.
T Consensus 54 ~~~v~~~esE~aA~~aaiGAa~aGaR~~t~Ts~~Gl~lm~e~l~~~ag~~~P~Vi~va~R~g 115 (1231)
T 2c42_A 54 TLTIREMQSEAGAAGAVHGALAAGALTTTFTASQGLLLMIPNMYKISGELLPGVFHVTARAI 115 (1231)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHHHHHHHHHTTCCCEEEEEECCC
T ss_pred ceEEEecCChHHHHHHHHHHHHcCChHhhhccHHHHHHHHHHHHHHhCCCCCEEEEECCCCc
Confidence 37889999999999999999999995332 44345568997777665544
No 78
>1njh_A Protein YOJF; structural genomics, PSI, protein structure initiative center for structural genomics, MCSG, unknown function; 1.70A {Bacillus subtilis} SCOP: b.128.1.1
Probab=27.08 E-value=69 Score=24.12 Aligned_cols=24 Identities=13% Similarity=0.324 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEEeecC
Q psy10436 77 DKLKKAFHEASQVKGKPTALIAKTFKG 103 (208)
Q Consensus 77 ~~l~~Al~~ak~~~~kP~vIi~~T~KG 103 (208)
+++.+.|++. .+||+-||+.|.-|
T Consensus 10 ~~VQ~~L~~f---~~~~VYiHlETTnG 33 (119)
T 1njh_A 10 EDVQASLERY---ADRPVYIHLETTTG 33 (119)
T ss_dssp HHHHHHHHHT---TTSCEEEEEEEEEC
T ss_pred HHHHHHHHHh---cCCceEEEEEecCc
Confidence 4456656554 46899999999998
No 79
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=26.10 E-value=54 Score=29.98 Aligned_cols=101 Identities=15% Similarity=0.014 Sum_probs=61.6
Q ss_pred HHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCCCccCCCccccCCcCCCCccccccc
Q psy10436 52 GLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130 (208)
Q Consensus 52 ~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~~~~e~~~~~H~~~~~~~l~~f~~~ 130 (208)
+.+.+++.|-+++. +-|... ..|.++|..
T Consensus 31 l~~~L~~~GV~~vfg~PG~~~-----~~l~~al~~--------------------------------------------- 60 (570)
T 2vbf_A 31 LLDRLHELGIEEIFGVPGDYN-----LQFLDQIIS--------------------------------------------- 60 (570)
T ss_dssp HHHHHHHTTCCEEEECCCGGG-----HHHHHHHHH---------------------------------------------
T ss_pred HHHHHHHcCCCEEEECCCcch-----HHHHHHHhc---------------------------------------------
Confidence 45889999998776 566654 567776643
Q ss_pred CCCcceeeccccccHHHHHHHHHhC-CCcccE--------------EEeccccCCCcEEEEecCCcc-ccCCCCCCCCh-
Q psy10436 131 YPDRYIECFIAEQNLVGVAIGAACR-NRTVPF--------------IRMGAISQTNVNFVGSHCGVS-IGEDGPSQMAL- 193 (208)
Q Consensus 131 ~P~r~~~~GIaE~~mv~~AaGlA~~-G~~~~~--------------ir~~a~~~~~v~~v~~~~G~~-~g~dG~TH~~i- 193 (208)
.|+=-+-...-|++++-+|.|.|+. | ..++ +-.+-+.+.|++++....... .+.+...||.+
T Consensus 61 ~~~i~~i~~~~E~~A~~~A~GyAr~tG-~~v~~~tsGpG~~N~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~ 139 (570)
T 2vbf_A 61 REDMKWIGNANELNASYMADGYARTKK-AAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLA 139 (570)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCS
T ss_pred CCCCeEECcCcHHHHHHHHHHHHHHhC-CeEEEEcCCCCHHHHHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeecc
Confidence 1221133466799999999999955 6 3232 333345689988876655443 23333445522
Q ss_pred -----hHHHHhccCC
Q psy10436 194 -----EDIAMFRTIP 203 (208)
Q Consensus 194 -----eDia~~r~lP 203 (208)
+...+++.+.
T Consensus 140 ~~~~~~~~~~~~~~t 154 (570)
T 2vbf_A 140 DGDFKHFMKMHEPVT 154 (570)
T ss_dssp SSCCCHHHHHTGGGC
T ss_pred ccchHHHHHHhhhhE
Confidence 2456776654
No 80
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=25.03 E-value=22 Score=32.27 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=41.2
Q ss_pred eccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCccccCCCCCCCC-hhHHHHhcc
Q psy10436 138 CFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMA-LEDIAMFRT 201 (208)
Q Consensus 138 ~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~-ieDia~~r~ 201 (208)
...-|++++.+|.|.|+...++.. +..+-+.+.|+.++........-..|+ +|. ++..++++.
T Consensus 43 ~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~~~~~-~q~~~d~~~~~~~ 121 (528)
T 1q6z_A 43 LALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEA-LLTNVDAANLPRP 121 (528)
T ss_dssp ECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHHTTTC-TTCCTTGGGSSTT
T ss_pred EECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHHHHHhhcCCCEEEEeCCCcccccCCCc-ccccccHHHHHHH
Confidence 345699999999999987333543 333345689998886655543322333 333 566666665
Q ss_pred CCC
Q psy10436 202 IPA 204 (208)
Q Consensus 202 lPn 204 (208)
+-.
T Consensus 122 ~~k 124 (528)
T 1q6z_A 122 LVK 124 (528)
T ss_dssp SCS
T ss_pred hhH
Confidence 543
No 81
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=24.92 E-value=77 Score=24.23 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=36.1
Q ss_pred HHHhhhHH-HHHHhcCCeEEE--EcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCC
Q psy10436 46 RLAYGIGL-AKLAASNSRVIA--LDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 46 ~D~~G~~~-~k~~a~G~~vi~--VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~ 106 (208)
+|.++..+ ..+++.|+++.. +-.||. ++|.++++++.+.. +.- ++-|.-|-|.
T Consensus 19 ~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~-----~~i~~~l~~~~~~~-~~D--lVittGG~g~ 74 (164)
T 2is8_A 19 QDTTHLAIREVLAGGPFEVAAYELVPDEP-----PMIKKVLRLWADRE-GLD--LILTNGGTGL 74 (164)
T ss_dssp CCCHHHHHHHHHTTSSEEEEEEEEECSCH-----HHHHHHHHHHHHTS-CCS--EEEEESCCSS
T ss_pred ccchHHHHHHHHHHCCCeEeEEEEcCCCH-----HHHHHHHHHHHhcC-CCC--EEEEcCCCCC
Confidence 46666654 788999999865 568887 99999999886521 111 3356666655
No 82
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Probab=23.48 E-value=1.7e+02 Score=21.83 Aligned_cols=49 Identities=12% Similarity=0.055 Sum_probs=32.6
Q ss_pred HHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeec
Q psy10436 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFK 102 (208)
Q Consensus 53 ~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~K 102 (208)
...+++.|.+++.+-.|.. ....+++.++++.+.+..+++++|++....
T Consensus 60 ~~~~~~~G~~~~~i~~Dv~-~~~~~~v~~~~~~i~~~~G~dVLVnnAgg~ 108 (157)
T 3gxh_A 60 GKLVTQAGMDYVYIPVDWQ-NPKVEDVEAFFAAMDQHKGKDVLVHCLANY 108 (157)
T ss_dssp HHHHHHTTCEEEECCCCTT-SCCHHHHHHHHHHHHHTTTSCEEEECSBSH
T ss_pred HHHHHHcCCeEEEecCCCC-CCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 4567888998877544322 111267888888777655669999987643
No 83
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=22.14 E-value=74 Score=28.81 Aligned_cols=44 Identities=18% Similarity=-0.044 Sum_probs=31.2
Q ss_pred eeccccccHHHHHHHHHhCCCcccE---------------EEeccccCCCcEEEEecCCc
Q psy10436 137 ECFIAEQNLVGVAIGAACRNRTVPF---------------IRMGAISQTNVNFVGSHCGV 181 (208)
Q Consensus 137 ~~GIaE~~mv~~AaGlA~~G~~~~~---------------ir~~a~~~~~v~~v~~~~G~ 181 (208)
-...-|++++-+|.|.|+... +.. +-.+-+.+.|++++......
T Consensus 47 i~~~~E~~A~~~A~Gyar~tg-~~v~~~tsGpG~~N~~~gv~~A~~~~~Pll~itg~~p~ 105 (552)
T 1ovm_A 47 VGCANELNASYAADGYARCKG-FAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGT 105 (552)
T ss_dssp EECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHTHHHHHHHHHTTCCEEEEEEECCH
T ss_pred EeeCcHHHHHHHHHHHHHhhC-CcEEEEccCCcHHHHHHHHHHHhhhcCCEEEEECCCCH
Confidence 346679999999999998765 443 32334568999888766544
No 84
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=21.96 E-value=38 Score=26.15 Aligned_cols=51 Identities=16% Similarity=0.015 Sum_probs=32.9
Q ss_pred HHHhhhHH-HH----HHhcCCeEEE--EcCCCCCCchHHHHHHHHHHhhcC-CCCCEEEEEEeecCCCC
Q psy10436 46 RLAYGIGL-AK----LAASNSRVIA--LDGDTKNSTFSDKLKKAFHEASQV-KGKPTALIAKTFKGKDF 106 (208)
Q Consensus 46 ~D~~G~~~-~k----~~a~G~~vi~--VDGhd~~~~~~~~l~~Al~~ak~~-~~kP~vIi~~T~KG~G~ 106 (208)
+|.++..+ .. +++.|+++.. +-+||. ++|.++++++.+. .+ ++-|.-|-|.
T Consensus 23 ~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~-----~~I~~~l~~a~~~~~D-----lVittGG~g~ 81 (167)
T 2g2c_A 23 ENKALPLLQRLMSDELQDYSYELISEVVVPEGY-----DTVVEAIATALKQGAR-----FIITAGGTGI 81 (167)
T ss_dssp CCCHHHHHHHHHCC----CEEEEEEEEEECSSH-----HHHHHHHHHHHHTTCS-----EEEEESCCSS
T ss_pred eccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCH-----HHHHHHHHHHHhCCCC-----EEEECCCCCC
Confidence 45666655 66 7899999864 568987 9999999988652 22 3346666554
No 85
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=20.91 E-value=2.8e+02 Score=22.60 Aligned_cols=50 Identities=6% Similarity=-0.015 Sum_probs=31.6
Q ss_pred HHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCCCC
Q psy10436 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDF 106 (208)
Q Consensus 52 ~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~G~ 106 (208)
+...|+.+||+|.... |. + .+++.++++++.+...+..=..+--+.|.|.
T Consensus 46 l~~~f~~LgF~V~~~~--dl--t-~~em~~~l~~~~~~~~~~~d~~v~~~lsHG~ 95 (250)
T 2j32_A 46 LRETFRNLKYEVRNKN--DL--T-REEIVELMRDVSKEDHSKRSSFVCVLLSHGE 95 (250)
T ss_dssp HHHHHHHTTCEEEEEE--SC--C-HHHHHHHHHHHHTSCCTTEEEEEEEEESCEE
T ss_pred HHHHHHHCCCEEEEEe--CC--C-HHHHHHHHHHHHHhhccCCCEEEEEECCCCC
Confidence 4578999999997642 22 1 2889999998876543333223333556665
No 86
>3ek3_A Nitroreductase; YP_211706.1, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc 9343}
Probab=20.68 E-value=70 Score=24.34 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=18.5
Q ss_pred CCcceeeccccccHHHHHHHHHhC
Q psy10436 132 PDRYIECFIAEQNLVGVAIGAACR 155 (208)
Q Consensus 132 P~r~~~~GIaE~~mv~~AaGlA~~ 155 (208)
+...+|+|++=|||.-.|..+-+.
T Consensus 107 ~~~~~d~g~a~~nl~LaA~~~Glg 130 (190)
T 3ek3_A 107 WWAGMDCACAIENMFLAATSLGIA 130 (190)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTCE
T ss_pred CccHhHHHHHHHHHHHHHHHCCCc
Confidence 345789999999999887765554
Done!