RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10436
(208 letters)
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis
sugar metaboli transferase; HET: TPP; 1.75A {Homo
sapiens} PDB: 3ooy_A*
Length = 616
Score = 192 bits (491), Expect = 2e-58
Identities = 97/203 (47%), Positives = 118/203 (58%), Gaps = 62/203 (30%)
Query: 20 DAPKVDISNIKLSSPPSYKKGELVATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKL 79
DAP VDI+NI++ S PSYK G+ +ATR AYG LAKL ++ R+IALDGDTKNSTFS+
Sbjct: 290 DAPSVDIANIRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIF 349
Query: 80 KKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKAYPDRYIECF 139
KK +PDR+IEC+
Sbjct: 350 KKE------------------------------------------------HPDRFIECY 361
Query: 140 IAEQNLVGVAIGAACRNRTVPF--------------IRMGAISQTNVNFVGSHCGVSIGE 185
IAEQN+V +A+G A RNRTVPF IRM AIS++N+N GSHCGVSIGE
Sbjct: 362 IAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGE 421
Query: 186 DGPSQMALEDIAMFRTIPACLVF 208
DGPSQMALED+AMFR++P VF
Sbjct: 422 DGPSQMALEDLAMFRSVPTSTVF 444
Score = 72.6 bits (179), Expect = 3e-15
Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 26/106 (24%)
Query: 44 ATRLAYGIGLAKLAA---SNSRVIALDGDTKNSTFSDKLKKAFHEA-------------- 86
A A L L A N + D +K EA
Sbjct: 164 AMAFASIYKLDNLVAILDINR--LGQSDPAPLQHQMDIYQKRC-EAFGWHAIIVDGHSVE 220
Query: 87 ------SQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSAD 126
Q K +PTA+IAKTFKG+ +EDKE WHGKPL + A+
Sbjct: 221 ELCKAFGQAKHQPTAIIAKTFKGRGITGVEDKESWHGKPLPKNMAE 266
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural
genomics, center for structural genomics of infectious
DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Length = 663
Score = 45.2 bits (108), Expect = 5e-06
Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 52 GLAKLAA---SNSRVIALDGDTKNSTFSD-----------------------KLKKAFHE 85
GL KL A N+ I++DGDTK FSD ++KA +E
Sbjct: 176 GLNKLVAFWDDNN--ISIDGDTKGW-FSDNTPERFRAYGWHVIENVDGHDFVAIEKAINE 232
Query: 86 ASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLG 121
A + KPT + KT G P HG PL
Sbjct: 233 AHSQQQKPTLICCKTVIGFGSPEKAGTASVHGSPLS 268
Score = 44.0 bits (105), Expect = 1e-05
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 160 PFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
IRM A+ + V V SH + +GEDGP+ +E + R IP V+
Sbjct: 444 NAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVW 492
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 44.8 bits (107), Expect = 7e-06
Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 29/96 (30%)
Query: 52 GLAKLAA---SNSRVIALDGDTKNSTFSD-----------------------KLKKAFHE 85
L KL A N I++DG + F+D +K+A E
Sbjct: 174 KLGKLIAFYDDNG--ISIDGHVEGW-FTDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEE 230
Query: 86 ASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLG 121
A V KP+ L+ KT G PN + HG PLG
Sbjct: 231 ARAVTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLG 266
Score = 43.6 bits (104), Expect = 2e-05
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 160 PFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
+RM A+ + V +H + +GEDGP+ +E +A R P +
Sbjct: 443 NAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTW 491
>3l84_A Transketolase; TKT, structural genomics, center for structur
genomics of infectious diseases, csgid, transferase;
HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A*
3m34_A* 3m7i_A*
Length = 632
Score = 44.4 bits (106), Expect = 1e-05
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 160 PFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
P R+ A+ + F+ +H + +GEDGP+ +E ++ FR +P L F
Sbjct: 423 PAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTF 471
Score = 40.9 bits (97), Expect = 1e-04
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 29/95 (30%)
Query: 52 GLAKLAA---SNSRVIALDGDTKNSTFSD----------------------KLKKAFHEA 86
L SN+ I+++GD + F++ ++ KA +A
Sbjct: 171 KLDNFILIYDSNN--ISIEGDVGLA-FNENVKMRFEAQGFEVLSINGHDYEEINKALEQA 227
Query: 87 SQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLG 121
+ KP +IAKT K +E + HG PLG
Sbjct: 228 -KKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLG 261
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase,
structural genomics, center for structural genomics of
infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A
{Bacillus anthracis} PDB: 3hyl_A*
Length = 690
Score = 44.4 bits (106), Expect = 1e-05
Identities = 28/96 (29%), Positives = 36/96 (37%), Gaps = 29/96 (30%)
Query: 52 GLAKLAA---SNSRVIALDGDTKNSTFSD-----------------------KLKKAFHE 85
L +L SN I+LDGD S FS+ + KA E
Sbjct: 200 QLGRLVVLYDSND--ISLDGDLNRS-FSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEE 256
Query: 86 ASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLG 121
A + +PT + +T G PN K HG PLG
Sbjct: 257 AKADEKRPTLIEVRTTIGFGSPNKSGKSASHGSPLG 292
Score = 44.0 bits (105), Expect = 2e-05
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 160 PFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
P IR+ A+ Q V +V +H +++GEDGP+ +E +A R +P V
Sbjct: 468 PAIRLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVI 516
>2e6k_A Transketolase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 2.09A
{Thermus thermophilus}
Length = 651
Score = 44.0 bits (105), Expect = 1e-05
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 160 PFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
P IR+ A+ FV +H +++GEDGP+ +E + R +P V
Sbjct: 438 PAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFVI 486
>3uk1_A Transketolase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, thiamine
pyrophosphate; 2.15A {Burkholderia thailandensis} PDB:
3upt_A*
Length = 711
Score = 44.1 bits (105), Expect = 1e-05
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 160 PFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
+R+ A+ + FV +H + +GEDGP+ ++E +A R IP V+
Sbjct: 489 NALRVAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVW 537
Score = 39.8 bits (94), Expect = 4e-04
Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 30/96 (31%)
Query: 52 GLAKLAA---SNSRVIALDGDTKNSTFSD-----------------------KLKKAFHE 85
L KL A N I++DGD N F D + A +
Sbjct: 215 KLNKLIALYDDNG--ISIDGDVVNW-FHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAK 271
Query: 86 ASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLG 121
A + KP+ + KT G + HG PLG
Sbjct: 272 A-KRSDKPSLICCKTRIGNGAATKAGGHDVHGAPLG 306
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A
{Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10
c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A*
1tkc_A*
Length = 680
Score = 43.6 bits (104), Expect = 2e-05
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 160 PFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
+R+ A+S V +V +H + +GEDGP+ +E +A FR++P V+
Sbjct: 451 GAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVW 499
Score = 40.5 bits (96), Expect = 2e-04
Identities = 23/97 (23%), Positives = 29/97 (29%), Gaps = 31/97 (31%)
Query: 52 GLAKLAA---SNSRVIALDGDTKNSTFSD------------------------KLKKAFH 84
L L A N I +DG T S F + + KA
Sbjct: 176 KLGNLIAIYDDNK--ITIDGATSIS-FDEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIA 232
Query: 85 EASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLG 121
+A K KPT + T G + HG PL
Sbjct: 233 QAKLSKDKPTLIKMTTTIGYGSLH-AGSHSVHGAPLK 268
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine
diphosphate binding domain, transferase; HET: TPP; 2.22A
{Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10
c.48.1.1
Length = 673
Score = 43.6 bits (104), Expect = 2e-05
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 160 PFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
+R+ AIS V +V +H + +GEDGP+ +E +A R +P V
Sbjct: 443 GAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVI 491
Score = 37.9 bits (89), Expect = 0.001
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 31/97 (31%)
Query: 52 GLAKLAA---SNSRVIALDGDTKNSTFSD------------------------KLKKAFH 84
L KL SN I++DG T S F++ L+KA
Sbjct: 176 ALEKLIVIYDSNY--ISIDGSTSLS-FTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALA 232
Query: 85 EASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLG 121
EA KGKP ++ T G + + E+ HG PLG
Sbjct: 233 EAKATKGKPKMIVQTTTIGFG-SSKQGTEKVHGAPLG 268
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium
tuberculosis}
Length = 700
Score = 43.3 bits (103), Expect = 2e-05
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 160 PFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
P +R+ A+ + +V +H + +GEDGP+ +E ++ R IP V
Sbjct: 473 PAVRLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLSVV 521
Score = 43.3 bits (103), Expect = 2e-05
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 29/96 (30%)
Query: 52 GLAKLAA---SNSRVIALDGDTKNSTFSD-----------------------KLKKAFHE 85
L L N I+++ DT + + +++A
Sbjct: 196 QLGNLIVFYDRNQ--ISIEDDTNIA-LCEDTAARYRAYGWHVQEVEGGENVVGIEEAIAN 252
Query: 86 ASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLG 121
A V +P+ + +T G PN+ D + HG LG
Sbjct: 253 AQAVTDRPSFIALRTVIGYPAPNLMDTGKAHGAALG 288
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate,
plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1
Length = 675
Score = 43.2 bits (103), Expect = 3e-05
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 160 PFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
+R+ A+S+ V +V +H + +GEDGP+ +E + FR +P L+
Sbjct: 456 GAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILML 504
Score = 42.8 bits (102), Expect = 3e-05
Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 30/97 (30%)
Query: 52 GLAKLAA---SNSRVIALDGDTKNSTFSD------------------------KLKKAFH 84
GL KL A N I++DGDT+ + F++ ++ A
Sbjct: 187 GLGKLIAFYDDNH--ISIDGDTEIA-FTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIK 243
Query: 85 EASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLG 121
EA V KPT + T G PN + HG LG
Sbjct: 244 EAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHGSALG 280
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid,
transferase; HET: TDP; 2.40A {Escherichia coli}
Length = 621
Score = 32.9 bits (76), Expect = 0.066
Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 23/103 (22%)
Query: 119 PLGSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPFIRMGAISQT-------- 170
GS + + +PDRY + IAEQ+ V A G A P + AI T
Sbjct: 347 REGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGG-YKPIV---AIYSTFLQRAYDQ 402
Query: 171 ----------NVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIP 203
V F G+ +G DG + D++ R IP
Sbjct: 403 VLHDVAIQKLPVLFAIDRAGI-VGADGQTHQGAFDLSYLRCIP 444
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.17
Identities = 38/204 (18%), Positives = 60/204 (29%), Gaps = 64/204 (31%)
Query: 3 IDLLIAVSIQPDKNLVSDAPKVDIS-----NIK--LSSP---PS--YKKGELVATRLAY- 49
+ LI S + L+ + NI L +P P Y L++ ++
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY----LLSIPISCP 239
Query: 50 GIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTAL-IAKTFKGKDFPN 108
IG+ +LA + V A LK A +G TA+ IA+T
Sbjct: 240 LIGVIQLA--HYVVTAKLLGFTPGELRSYLKGA---TGHSQGLVTAVAIAET-------- 286
Query: 109 IEDKEEWHGKPLGSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPFIRMGA-I 167
+ E + S + F IG C P + I
Sbjct: 287 -DSWESFF-----VSVRKAITVL-------FF---------IGVRCY-EAYPNTSLPPSI 323
Query: 168 SQTNVNFVGSHCGVSIGEDGPSQM 191
+ ++ E PS M
Sbjct: 324 LEDSLE---------NNEGVPSPM 338
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS,
transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Length = 629
Score = 31.3 bits (72), Expect = 0.22
Identities = 41/189 (21%), Positives = 62/189 (32%), Gaps = 68/189 (35%)
Query: 77 DKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIE-DKEEWH---------GKPLGSSS-- 124
+L + G PT L T KGK E D WH G+ + SS+
Sbjct: 265 QELVWLLERLVDLDG-PTILHIVTTKGKGLSYAEADPIYWHGPAKFDPATGEYVPSSAYS 323
Query: 125 -----ADVL---------------------------KAYPDRYIECFIAEQNLVGVAIGA 152
+ + + +P RY++ IAE+ V A G
Sbjct: 324 WSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGM 383
Query: 153 ACRNRTVPFIRMGAISQT------------------NVNFVGSHCGVSIGEDGPSQMALE 194
A + P + AI T NV F G+ +G DG + +
Sbjct: 384 ALQG-MRPVV---AIYSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGI-VGADGATHNGVF 438
Query: 195 DIAMFRTIP 203
D++ R+IP
Sbjct: 439 DLSFLRSIP 447
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate,
glycolysis, MAG metal-binding, oxidoreductase, thiamine
pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A*
2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Length = 886
Score = 30.9 bits (70), Expect = 0.29
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 76 SDKLKKAFHEASQVKGKPTALIAKTFKG 103
K+ AF +A + KGK T ++A T KG
Sbjct: 366 PKKIYAAFKKAQETKGKATVILAHTIKG 393
>2wzx_A Beta-lactamase; inhibitor, hydrolase, antibiotic resistance; HET:
ZX0; 1.40A {Pseudomonas aeruginosa} PDB: 2wzz_A* 3s1y_A*
3s22_A*
Length = 371
Score = 28.2 bits (63), Expect = 1.8
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 121 GSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTV 159
G + AD LKA D ++ + ++ G+A+ + +
Sbjct: 1 GEAPADRLKALVDAAVQPVMKANDIPGLAVAISLKGEPH 39
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase;
2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Length = 369
Score = 28.4 bits (64), Expect = 1.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 132 PDRYIECFIAEQNLVGVAIGAA 153
P+R I+ + E ++G A+G A
Sbjct: 97 PERVIDTPLNEGGILGFAMGMA 118
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B*
1umc_B* 1umb_B*
Length = 324
Score = 28.2 bits (64), Expect = 1.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 132 PDRYIECFIAEQNLVGVAIGAA 153
PDR ++ ++E +VG A+G A
Sbjct: 50 PDRVMDTPLSEAAIVGAALGMA 71
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Length = 338
Score = 27.9 bits (63), Expect = 2.1
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 132 PDRYIECFIAEQNLVGVAIGAA 153
R + I+E +VG A+G
Sbjct: 51 KSRVFDAPISESGIVGTAVGMG 72
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2
PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Length = 324
Score = 27.9 bits (63), Expect = 2.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 132 PDRYIECFIAEQNLVGVAIGAA 153
DR + +AE + G+AIG A
Sbjct: 49 EDRVFDTPLAESGIGGLAIGLA 70
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta;
pyruvate_dehydrogenase_complex, human,
multienzyme_complex_component; HET: TPP; 1.90A {Homo
sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B*
3exf_B* 3exg_B 3exh_B* 3exi_B
Length = 341
Score = 27.5 bits (62), Expect = 3.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 132 PDRYIECFIAEQNLVGVAIGAA 153
R I+ I+E G+A+GAA
Sbjct: 61 DKRIIDTPISEMGFAGIAVGAA 82
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB:
1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B*
1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B*
2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Length = 342
Score = 27.5 bits (62), Expect = 3.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 132 PDRYIECFIAEQNLVGVAIGAA 153
DR + EQ +VG IG A
Sbjct: 66 KDRVFNTPLCEQGIVGFGIGIA 87
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 27.6 bits (62), Expect = 3.2
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 52 GLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIED 111
G K+++S IA+D D+ + K+KKA+ A V+G P IAK F I+
Sbjct: 201 GEGKMSSSKGNFIAVD-DSPEEIRA-KIKKAYCPAGVVEGNPIMEIAKYFLEYPL-TIKR 257
Query: 112 KEEWHGKPLGSSSADVLKA 130
E++ G L +S + L++
Sbjct: 258 PEKF-GGDLTVNSYEELES 275
>2v5i_A Salmonella typhimurium DB7155 bacteriophage DET7 tailspike;
O-antigen binding and hydrolysis, beta-helix, viral
protein; 1.60A {Bacteriophage}
Length = 559
Score = 27.6 bits (60), Expect = 3.9
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 6 LIAVSIQPDKNLVSDAPKVDISNIKLSSPPSYKKGELVATRLAYGIGLAKLAASNSRVIA 65
+ QP LV AP IS + + PP LV L +G +++ NS
Sbjct: 399 AAGIKPQPSNGLVISAPNSTISGLVGNVPPDKI---LVGNLLDPVLGQSRVIGFNSDTAE 455
Query: 66 LD 67
L
Sbjct: 456 LA 457
>2gut_A ARC/mediator, positive cofactor 2 glutamine/Q- rich-associated
protein; KIX, 3 helical bundle, transcription; NMR {Homo
sapiens}
Length = 77
Score = 25.5 bits (55), Expect = 4.3
Identities = 9/52 (17%), Positives = 23/52 (44%)
Query: 64 IALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEW 115
+ + D +++ F KL +A + G + +K + F + ++E+
Sbjct: 3 MGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEY 54
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 4.7
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 7/42 (16%)
Query: 107 PNIEDKEEWHGK-------PLGSSSADVLKAYPDRYIECFIA 141
+E++ H P S D++ Y D+Y I
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate,
indole-3-acetic acid, TDP dependent enzyme, lyase; HET:
TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3
c.36.1.5 c.36.1.9
Length = 552
Score = 27.1 bits (61), Expect = 5.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 54 AKLAASNSRVIALDGD 69
A+ A N RVI L GD
Sbjct: 420 AQTACPNRRVIVLTGD 435
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase;
HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A*
2qfx_A* 2qfv_A*
Length = 427
Score = 26.7 bits (58), Expect = 6.0
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 43 VATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPT---ALIAK 99
+A+ A+ GL K LD F++ L+ A Q G T AL
Sbjct: 346 IASIFAWSRGLLKRGE-------LDNTPALCKFANILESATLNTVQQDGIMTKDLALACG 398
Query: 100 TFKGKDFPNIED 111
+ + E+
Sbjct: 399 NNERSAYVTTEE 410
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 26.7 bits (60), Expect = 6.4
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 54 AKLAASNSRVIALDGD 69
+ A R I + GD
Sbjct: 425 YAVGAPERRNILMVGD 440
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha
sandwich, structural genomics, PSI-2, protein structure
initiative; 2.60A {Bacteroides thetaiotaomicron}
Length = 217
Score = 26.2 bits (58), Expect = 7.0
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 17 LVSDAPKVDISNIKLSSPPSYKKGELVATRLAYG 50
L +D ++I + + K L R A+G
Sbjct: 118 LTADCTSLEIGDHEDKKEGKVYKNLLYQIRPAFG 151
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv
flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A
{Acetobacter pasteurianus}
Length = 566
Score = 26.3 bits (59), Expect = 8.2
Identities = 2/16 (12%), Positives = 8/16 (50%)
Query: 54 AKLAASNSRVIALDGD 69
+ + + + + + GD
Sbjct: 421 NAMGSQDRQHVVMVGD 436
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric
dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A
{Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A*
2q5q_A*
Length = 565
Score = 26.4 bits (59), Expect = 8.6
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 47 LAYGIGLAKLAASNSRVIALDGD 69
+ GIG A+ + R++ + GD
Sbjct: 428 VPAGIG-AQCVSGGKRILTVVGD 449
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 8.8
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 11/35 (31%)
Query: 14 DKNLVSDAPKVDISNIKLSSPPSYKKGELVATRLA 48
+K + K+ +++KL + S A LA
Sbjct: 18 EKQALK---KLQ-ASLKLYADDS-------APALA 41
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.386
Gapped
Lambda K H
0.267 0.0815 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,095,488
Number of extensions: 179981
Number of successful extensions: 415
Number of sequences better than 10.0: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 49
Length of query: 208
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 119
Effective length of database: 4,216,824
Effective search space: 501802056
Effective search space used: 501802056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.8 bits)