RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10436
(208 letters)
>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 190
Score = 68.2 bits (166), Expect = 5e-15
Identities = 34/188 (18%), Positives = 56/188 (29%), Gaps = 56/188 (29%)
Query: 35 PSYKKGELVATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPT 94
P+ +ATR A LA L + ++ D S +
Sbjct: 8 PTNSSA--IATRKASENCLAVLFPAIPALMGGSADLTPSNLT------------------ 47
Query: 95 ALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKAYPDRYIECFIAEQNLVGVAIGAAC 154
+ RYI + E + + G
Sbjct: 48 ----RPASANLVDFSSSS------------------KEGRYIRFGVREHAMCAILNGLDA 85
Query: 155 RNRTVPF--------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFR 200
+ +PF +R+ AIS V +V +H + +GEDGP+ +E +A R
Sbjct: 86 HDGIIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALR 145
Query: 201 TIPACLVF 208
+P V
Sbjct: 146 AMPNLQVI 153
>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 197
Score = 56.7 bits (136), Expect = 7e-11
Identities = 34/190 (17%), Positives = 56/190 (29%), Gaps = 53/190 (27%)
Query: 35 PSYKKGEL-VATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKP 93
P+Y + VATR L + +I D
Sbjct: 10 PTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTP--------------------- 48
Query: 94 TALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKAYPDRYIECFIAEQNLVGVAIGAA 153
+ W + Y RYI I E + + G +
Sbjct: 49 ----------------SNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGIS 92
Query: 154 CRNRTVPF---------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAM 198
+R+ A+S V +V +H + +GEDGP+ +E +A
Sbjct: 93 AFGANYKPYGGTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAH 152
Query: 199 FRTIPACLVF 208
FR++P V+
Sbjct: 153 FRSLPNIQVW 162
>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize
(Zea mays) [TaxId: 4577]}
Length = 192
Score = 56.0 bits (134), Expect = 2e-10
Identities = 33/190 (17%), Positives = 54/190 (28%), Gaps = 58/190 (30%)
Query: 35 PSYKK-GELVATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKP 93
P Y ATR L LA +I D +S
Sbjct: 10 PKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNM------------------ 51
Query: 94 TALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKAYPDRYIECFIAEQNLVGVAIGAA 153
DF +R + + E + + G A
Sbjct: 52 ----TLLKMFGDFQK--------------------DTAEERNVRFGVREHGMGAICNGIA 87
Query: 154 CRN---------------RTVPFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAM 198
+ +R+ A+S+ V +V +H + +GEDGP+ +E +
Sbjct: 88 LHSPGFVPYCATFFVFTDYMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVS 147
Query: 199 FRTIPACLVF 208
FR +P L+
Sbjct: 148 FRAMPNILML 157
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
(Zea mays) [TaxId: 4577]}
Length = 338
Score = 43.7 bits (102), Expect = 6e-06
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 54 AKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKE 113
+ A I + D ++ A EA V KPT + T G PN +
Sbjct: 207 TRFEALGWHTIWVKNGNT---GYDDIRAAIKEAKAVTDKPTLIKVTTTIGFGSPNKANSY 263
Query: 114 EWHGKPLGSSSADVLKA 130
HG LG+ + +
Sbjct: 264 SVHGSALGAKEVEATRQ 280
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module
{Escherichia coli [TaxId: 562]}
Length = 195
Score = 40.2 bits (93), Expect = 4e-05
Identities = 24/185 (12%), Positives = 45/185 (24%), Gaps = 57/185 (30%)
Query: 38 KKGELVATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALI 97
+A+R A + + D S +
Sbjct: 18 ANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAIN------------ 65
Query: 98 AKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNR 157
+ YI + E + +A G +
Sbjct: 66 -------------------------------EDAAGNYIHYGVREFGMTAIANGISLHGG 94
Query: 158 TV--------------PFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIP 203
+ +RM A+ + V +H + +GEDGP+ +E +A R P
Sbjct: 95 FLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTP 154
Query: 204 ACLVF 208
+
Sbjct: 155 NMSTW 159
>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component,
PP module {Escherichia coli [TaxId: 562]}
Length = 415
Score = 41.0 bits (95), Expect = 5e-05
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 77 DKLKKAFHEASQVKGKPTALIAKTFKGKDFPN-IEDKEEWHG-KPLGSSSADVLKAYPDR 134
K+ AF +A + KGK T ++A T KG + E K H K + D ++ DR
Sbjct: 312 KKIYAAFKKAQETKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMN---MDGVRHIRDR 368
Query: 135 Y 135
+
Sbjct: 369 F 369
>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 37.1 bits (85), Expect = 0.001
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 53 LAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDK 112
+ A VI + + +K+A EA V KP+ L+ KT G PN
Sbjct: 201 AMRFEAYGWHVI----RDIDGHDAASIKRAVEEARAVTDKPSLLMCKTIIGFGSPNKAGT 256
Query: 113 EEWHGKPLGSSSADVLKA 130
+ HG PLG + + +
Sbjct: 257 HDSHGAPLGDAEIALTRE 274
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22
[TaxId: 10754]}
Length = 554
Score = 26.9 bits (59), Expect = 2.2
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 10/65 (15%)
Query: 6 LIAVSIQPDKNLVSDAPKVDISNIKLSSPPSYKKGELVATRLAYGIGLAKLAASNSRVIA 65
LI + + L DAP +S I PS VA G+G N R +
Sbjct: 391 LIGIRSTDGQGLTIDAPNSTVSGITGMVDPSRI---NVANLAEEGLG-------NIRANS 440
Query: 66 LDGDT 70
D+
Sbjct: 441 FGYDS 445
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 336
Score = 24.8 bits (53), Expect = 8.7
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 72 NSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKA 130
T + L+KA EA KGKP ++ T G E+ HG PLG +KA
Sbjct: 218 GDTDYEGLRKALAEAKATKGKPKMIVQTTTIGFGSSKQ-GTEKVHGAPLGEEDIANIKA 275
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.386
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 730,385
Number of extensions: 31204
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 15
Length of query: 208
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,295,466
Effective search space: 164524182
Effective search space used: 164524182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)