BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10437
         (619 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255)
           From Thermotoga Maritima At 1.90 A Resolution
 pdb|1O4S|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1255)
           From Thermotoga Maritima At 1.90 A Resolution
          Length = 389

 Score = 31.6 bits (70), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 28/59 (47%)

Query: 193 DELVGFQSKWDHKITTLPGLYLFSIGIFKPIGLLLKYDICTVNILRSTNLICAIFNFYL 251
           +E V F  K + K T   G+Y    GI K IG   K DI    ++ +     A+FN ++
Sbjct: 61  EEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFM 119


>pdb|2V8T|A Chain A, Crystal Structure Of Mn Catalase From Thermus Thermophilus
           Complexed With Chloride
 pdb|2V8T|B Chain B, Crystal Structure Of Mn Catalase From Thermus Thermophilus
           Complexed With Chloride
 pdb|2V8U|A Chain A, Atomic Resolution Structure Of Mn Catalase From Thermus
           Thermophilus
 pdb|2V8U|B Chain B, Atomic Resolution Structure Of Mn Catalase From Thermus
           Thermophilus
          Length = 302

 Score = 30.0 bits (66), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 17  HWNKKYDYSSGNAIEESVTNMVMRYGPRLWKLRVLQAELRMTIRP 61
           HWN +Y ++SGN I + + N  +    R  KLRV +    MT  P
Sbjct: 132 HWNGEYVFTSGNLILDLLHNFFLEVAARTHKLRVYE----MTDNP 172


>pdb|2CWL|A Chain A, Crystal Structure Of Manganese-Free Form Of Pseudocatalase
           From Thermus Thermophilus Hb8
 pdb|2CWL|B Chain B, Crystal Structure Of Manganese-Free Form Of Pseudocatalase
           From Thermus Thermophilus Hb8
          Length = 302

 Score = 30.0 bits (66), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 17  HWNKKYDYSSGNAIEESVTNMVMRYGPRLWKLRVLQAELRMTIRP 61
           HWN +Y ++SGN I + + N  +    R  KLRV +    MT  P
Sbjct: 132 HWNGEYVFTSGNLILDLLHNFFLEVAARTHKLRVYE----MTDNP 172


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.142    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,720,147
Number of Sequences: 62578
Number of extensions: 712192
Number of successful extensions: 1806
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1800
Number of HSP's gapped (non-prelim): 8
length of query: 619
length of database: 14,973,337
effective HSP length: 105
effective length of query: 514
effective length of database: 8,402,647
effective search space: 4318960558
effective search space used: 4318960558
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (25.4 bits)