Query psy10437
Match_columns 619
No_of_seqs 232 out of 383
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 18:09:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04922 DIE2_ALG10: DIE2/ALG1 100.0 1E-107 2E-112 870.6 27.1 370 131-557 1-379 (379)
2 KOG2642|consensus 100.0 8E-106 2E-110 827.8 22.1 415 130-605 25-446 (446)
3 KOG0368|consensus 100.0 7.1E-44 1.5E-48 409.4 14.2 197 1-224 1329-1537(2196)
4 PF08326 ACC_central: Acetyl-C 99.9 5E-25 1.1E-29 252.4 0.0 110 1-112 592-708 (708)
5 TIGR03766 conserved hypothetic 96.9 0.0097 2.1E-07 66.8 12.6 130 206-348 113-254 (483)
6 PF13231 PMT_2: Dolichyl-phosp 96.5 0.042 9E-07 50.5 12.0 97 233-338 20-123 (159)
7 PF02366 PMT: Dolichyl-phospha 90.4 3.5 7.6E-05 41.7 11.9 95 232-334 80-186 (245)
8 PF04188 Mannosyl_trans2: Mann 85.9 10 0.00023 42.5 12.9 71 275-346 145-215 (443)
9 COG5542 Predicted integral mem 77.2 7.3 0.00016 43.5 7.5 95 241-344 123-219 (420)
10 TIGR03663 conserved hypothetic 76.9 9.3 0.0002 42.9 8.4 98 232-339 68-172 (439)
11 PRK13279 arnT 4-amino-4-deoxy- 71.6 1.5E+02 0.0031 34.7 16.4 89 204-307 58-146 (552)
12 PF09594 DUF2029: Protein of u 68.7 42 0.00091 33.0 10.0 61 279-340 60-120 (241)
13 PF09913 DUF2142: Predicted me 67.2 82 0.0018 34.1 12.7 111 208-334 95-215 (389)
14 COG1807 ArnT 4-amino-4-deoxy-L 56.8 57 0.0012 37.0 9.6 115 204-334 60-182 (535)
15 PF03901 Glyco_transf_22: Alg9 49.4 1.6E+02 0.0035 32.3 11.3 103 234-345 81-195 (418)
16 PLN02816 mannosyltransferase 32.2 3.5E+02 0.0076 31.6 10.9 24 317-340 201-225 (546)
17 PF09852 DUF2079: Predicted me 25.6 6.6E+02 0.014 28.1 11.4 109 232-348 57-166 (449)
18 KOG1168|consensus 25.3 36 0.00077 36.6 1.3 27 26-56 215-241 (385)
19 TIGR02854 spore_II_GA sigma-E 23.8 4.2E+02 0.0091 28.2 9.0 89 236-333 7-112 (288)
20 PF07919 Gryzun: Gryzun, putat 22.2 1.1E+02 0.0024 34.5 4.7 48 45-92 461-511 (554)
21 PF15513 DUF4651: Domain of un 21.6 32 0.0007 28.9 0.1 10 480-489 41-50 (62)
22 COG3518 Predicted component of 20.7 2.8E+02 0.006 27.4 6.3 37 12-48 69-107 (157)
23 PF02078 Synapsin: Synapsin, N 20.4 33 0.00071 31.6 -0.1 45 42-103 25-72 (105)
No 1
>PF04922 DIE2_ALG10: DIE2/ALG10 family; InterPro: IPR007006 Members of this entry are glycosyltransferases, belonging to the ALG10 family. The majority of the members are annotated as alpha-1,2 glucosyltransferas. The ALG10 protein from Saccharomyces cerevisiae (Baker's yeast) encodes the alpha-1,2 glucosyltransferase of the endoplasmic reticulum. This protein has been characterised in Rat as potassium channel regulator 1 [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane
Probab=100.00 E-value=1e-107 Score=870.64 Aligned_cols=370 Identities=42% Similarity=0.759 Sum_probs=311.2
Q ss_pred CCCCCCCccccccccccceeecccccccchHHHHHHHHHcCCccccccccccccccCCCCCCCcccccCCcccccccCCC
Q psy10437 131 SGNAPNPYIDEQFHIPQAAKFCKGNFFESGNYAANRERAARPYFFIFYKFGHAFSTSLAMPRDELVGFQSKWDHKITTLP 210 (619)
Q Consensus 131 ~~~q~kr~~aEiFh~~~tt~Y~~yDFp~lfe~Al~~~W~~~~~~~~~~~~~~~~~~~~~~p~~ELvl~~g~~d~~vtrpP 210 (619)
|..+|+||+||+||.+|+|+||+||| ++||+|+||||
T Consensus 1 ~~~vp~PYmDEiFHipQaq~YC~g~f-------------------------------------------~~WDpKITTpP 37 (379)
T PF04922_consen 1 NHIVPEPYMDEIFHIPQAQAYCRGRF-------------------------------------------TEWDPKITTPP 37 (379)
T ss_pred CCCCCCCcccchhhhHHHHHHHhchh-------------------------------------------hhhCCccCCCc
Confidence 45799999999999999999999999 89999999999
Q ss_pred cceeeeeeeeehhhhhcccccCChh-hHhhhhhHHHH-HHHHHHHHHHHhhccccCCccchhhHHHHHHHHHHhhcchhh
Q psy10437 211 GLYLFSIGIFKPIGLLLKYDICTVN-ILRSTNLICAI-FNFYLIYEILKVKNISKDGIDQMSLFKILLSALNISTFPVLY 288 (619)
Q Consensus 211 GlN~iGMV~w~~~~~~~~~~~C~~~-~LR~~Nl~~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~a~~i~~fP~l~ 288 (619)
|+|.+|++..++...+. .|+.. .||++|+++++ +++++++++++..+.+ .+.+..++|+||++||++|
T Consensus 38 GLYlls~~~l~~~~~~~---~~~~~~~LR~~N~l~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~a~~ialfPllf 107 (379)
T PF04922_consen 38 GLYLLSVAALFPGSWFF---GCSSLSVLRSTNLLFALVVLPWLIYRILRFLNPR-------RSRKAILSALNIALFPLLF 107 (379)
T ss_pred hHHHHHHHHHhhHHHhh---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHhhHHH
Confidence 99999998666544444 36664 49999999977 8899999887764322 2367899999999999999
Q ss_pred hhhhhhccchhHHHHHHHHHHHHhhchhhHHHHHHHHHhhhhchhhhHHHHHHHHHHHhhhHHHHhhhcccccccccchh
Q psy10437 289 FFSFLYYTDALSTSMVLLMYALNLQSKYQLSAAMGFFAVMVRQTNIIWVFYIATEIVLSDLEVFFEKMSKKNAFSKGSYL 368 (619)
Q Consensus 289 ff~fLyYTDv~St~~VL~~y~~~l~~~~~lsal~g~~av~~RQTNIvWv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (619)
|||||||||++||++||+||..+++++++.||++|++|++|||||||||+|++|..++++++...++...+ ..++...
T Consensus 108 FFsfLYYTDv~St~~VL~~yl~~~~~~~~~sal~g~~sv~fRQTNIvWv~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 185 (379)
T PF04922_consen 108 FFSFLYYTDVWSTTFVLLMYLASLKRRHWLSALFGLLSVLFRQTNIVWVAFFAGGALARQLDRSRPQGKQS-KFNDVLR- 185 (379)
T ss_pred HhhHHHHhcHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcchhhcc-cchHHHH-
Confidence 99999999999999999999999999999999999999999999999999999997766665443322111 1111000
Q ss_pred HHHHHHHHHHhhccch-hhhhhHHHHHHHHhhhheEcCcEEeccCCCCCccccchhhHHHHHHHHHhhhhhhHH--HHHH
Q psy10437 369 KVSQAMIKQLISRGTH-KKVIGFAMVMFLFVLFIMLNQGIVVGDRSSHKPVVHVPQMFYFATFCLFFSLPYALR--SLES 445 (619)
Q Consensus 369 ~~~~~~~~~~~~~~~~-~~~~Pyi~v~~~F~~FV~wNGgIVlGDks~H~~~~H~~Ql~Yf~~f~~~fs~P~~l~--~l~~ 445 (619)
...+.......+.+.+ ..+|||++++++|++||+|||||||||||||+|++|+|||+||++|+++||||.+++ .+++
T Consensus 186 ~~~~~~~~~~~~l~~~~~~~~Py~~v~~~F~~FV~~NGgIVlGDKsnH~a~~H~~Ql~Yf~~f~~~fs~P~~l~~~~l~~ 265 (379)
T PF04922_consen 186 TFLSFLKLFISSLPDISLLLLPYILVLAAFAAFVYWNGGIVLGDKSNHVATLHLPQLFYFWLFFAFFSWPLLLSPSQLSR 265 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheEcCeEEECccccCCccccHHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 0112221111233333 356899999999999999999999999999999999999999999999999999987 5677
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhcCccccccccCCCCccchhhhhhhhhcchhhhhhhHHHHHHHHHhhhcc----C
Q psy10437 446 FSKLLFSIDRSFILLLWAVAFYYIIQHNTLVHPFTLADNRHYTFYIWKRLYENIPYFRYLMIPVYVFSFYHLMRN----C 521 (619)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~T~vHPflLADNRHYtFYiwrr~~~~~~~~ryl~iP~Y~~~~~~~~~~----~ 521 (619)
+.+.+.+ +.....+.+++++++|++||++|||+||||||||||||||++++|++.||+++|+|++|+|.+++. +
T Consensus 266 ~~~~~~~--~~~~~~~~~~~~~~~v~~fT~vHPflLADNRHY~FYiwrr~~~~~~~~ky~l~P~Y~~~~~~~~~~l~~~~ 343 (379)
T PF04922_consen 266 FFRFLRR--NPILTSLLILAIMLIVVHFTIVHPFLLADNRHYTFYIWRRIIRRHPWVKYLLVPVYIFSGWAIWRSLASRR 343 (379)
T ss_pred HHHHHHh--hhHHHHHHHHHHHHHHHHhhccCceeccccceeehHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7777666 455555556667778888899999999999999999999999999999999999999999998877 5
Q ss_pred cchhhHHHHHHHHHHhcCcCccccccchHHHHHHHh
Q psy10437 522 TFKYFFLFTTCVFLNLVPQLLLELRYFIMPFILYRL 557 (619)
Q Consensus 522 ~~~~~l~~~~~~~l~Lvp~pLvEpRYfiiP~vl~RL 557 (619)
+.+|.++|.+|++++||||||+||||||+||++|||
T Consensus 344 ~~~~~l~~~~~~~l~lvp~pL~E~RYfiiP~~~~rl 379 (379)
T PF04922_consen 344 SVLWVLLFVLATALTLVPSPLVEPRYFIIPYVLWRL 379 (379)
T ss_pred ChHHHHHHHHHHHHHHcCccccchhHHHHHHHHHhC
Confidence 789999999999999999999999999999999997
No 2
>KOG2642|consensus
Probab=100.00 E-value=8.4e-106 Score=827.84 Aligned_cols=415 Identities=37% Similarity=0.720 Sum_probs=361.7
Q ss_pred CCCCCCCCccccccccccceeecccccccchHHHHHHHHHcCCccccccccccccccCCCCCCCcccccCCcccccccCC
Q psy10437 130 SSGNAPNPYIDEQFHIPQAAKFCKGNFFESGNYAANRERAARPYFFIFYKFGHAFSTSLAMPRDELVGFQSKWDHKITTL 209 (619)
Q Consensus 130 ~~~~q~kr~~aEiFh~~~tt~Y~~yDFp~lfe~Al~~~W~~~~~~~~~~~~~~~~~~~~~~p~~ELvl~~g~~d~~vtrp 209 (619)
.....|++|+||+||..||++||++|| +||+++|||
T Consensus 25 ~~~yvpepymDEiFHi~Qtq~yc~g~w--------------------------------------------sWdP~ITTp 60 (446)
T KOG2642|consen 25 VYHYVPEPYMDEIFHITQTQRYCSGNW--------------------------------------------SWDPLITTP 60 (446)
T ss_pred HHhhCCchhhhhHhhhHHHHHHhcCCC--------------------------------------------CCCcccCCC
Confidence 345689999999999999999999999 499999999
Q ss_pred CcceeeeeeeeehhhhhcccccCChhhHhhhhhHH-HHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHHhhcchhh
Q psy10437 210 PGLYLFSIGIFKPIGLLLKYDICTVNILRSTNLIC-AIFNFYLIYEILKVKNISKDGIDQMSLFKILLSALNISTFPVLY 288 (619)
Q Consensus 210 PGlN~iGMV~w~~~~~~~~~~~C~~~~LR~~Nl~~-~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~a~~i~~fP~l~ 288 (619)
||+|.+||.+|++.. .||...||.+|+++ .++.++++-++...++.++ + +....+++.+++.+|+++
T Consensus 61 PglYlvsv~~~sp~~------~~Si~~lrlinll~g~i~lp~li~~~v~llnna~-g-----~~~~~f~~~tl~slP~l~ 128 (446)
T KOG2642|consen 61 PGLYLVSVPACSPNE------RCSILLLRLINLLCGRIFLPVLIPTLVILLNNAD-G-----QQDVWFTASTLGSLPILI 128 (446)
T ss_pred CeeEEEeeccccccc------cchhHHHHHHHHHhccEeEEeeeccchhhhcccc-c-----ceeEEeehhHHhhccHHH
Confidence 999999999998832 49999999999998 5556666665533332221 1 112357889999999999
Q ss_pred hhhhhhccchhHHHHHHHHHHHHhhchhhHHHHHHHHHhhhhchhhhHHHHHHHHHHHhhhHHHHhhhcccccccccchh
Q psy10437 289 FFSFLYYTDALSTSMVLLMYALNLQSKYQLSAAMGFFAVMVRQTNIIWVFYIATEIVLSDLEVFFEKMSKKNAFSKGSYL 368 (619)
Q Consensus 289 ff~fLyYTDv~St~~VL~~y~~~l~~~~~lsal~g~~av~~RQTNIvWv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (619)
|||||||||++||++||++|..++.++++.||.+|++|++||||||||.+|+|+..+++++.+.+++.-.++.+.+...
T Consensus 129 ~fsfLfYTD~~St~~vllay~f~~~~n~~~SAfl~~~s~lfRQTNIIWa~fia~~viAs~~~~~~~k~~n~~tfa~~l~- 207 (446)
T KOG2642|consen 129 FFSFLFYTDLGSTFFVLLAYLFCLYGNHKTSAFLGFCSFLFRQTNIIWAVFIAGNVIASKLTEAWKKELNKGTFAEFLK- 207 (446)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhHHHhHHhccccHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999988888766666655332
Q ss_pred HHHHHHHHHHhhccchh-hhhhHHHHHHHHhhhheEcCcEEeccCCCCCccccchhhHHHHHHHHHhhhhhhHH--HHHH
Q psy10437 369 KVSQAMIKQLISRGTHK-KVIGFAMVMFLFVLFIMLNQGIVVGDRSSHKPVVHVPQMFYFATFCLFFSLPYALR--SLES 445 (619)
Q Consensus 369 ~~~~~~~~~~~~~~~~~-~~~Pyi~v~~~F~~FV~wNGgIVlGDks~H~~~~H~~Ql~Yf~~f~~~fs~P~~l~--~l~~ 445 (619)
+.+++...+...++.. ..|||+...++|.+|++||||||+||||+|+|++|++|+|||..|+++||+|.++| .++.
T Consensus 208 -i~~fl~a~lknls~l~~~~wPyi~~~~lF~~fl~wn~sIvLGDkssHqa~lH~~QifY~f~F~~~fS~p~l~s~s~ik~ 286 (446)
T KOG2642|consen 208 -ILQFLLAYLKNLSMLALLTWPYILLGFLFCAFLVWNGSIVLGDKSSHQACLHFPQIFYFFSFTLFFSFPHLLSPSKIKT 286 (446)
T ss_pred -HHHHHHHHHHHHHHHHHhhhHHHHHHHHhheeeEecCeEEEcccccccccccHHHHHHHHHHHHHHhhHhhcChhHHHH
Confidence 4455554333333333 24999999999999999999999999999999999999999999999999999997 4455
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhcCccccccccCCCCccchhhhhhhhhcchhhhhhhHHHHHHHHHhhhcc---Cc
Q psy10437 446 FSKLLFSIDRSFILLLWAVAFYYIIQHNTLVHPFTLADNRHYTFYIWKRLYENIPYFRYLMIPVYVFSFYHLMRN---CT 522 (619)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~T~vHPflLADNRHYtFYiwrr~~~~~~~~ryl~iP~Y~~~~~~~~~~---~~ 522 (619)
.++.++++ +...+++..+..++++++||++|||+||||||||||+|||+++|++.+||+++|.|++|+|.+.++ +.
T Consensus 287 llslv~k~-k~~~~~v~~~~v~li~~f~T~~HpyLLADNRHytFYv~rRl~~r~~~lky~l~p~Y~fs~~f~lds~~s~~ 365 (446)
T KOG2642|consen 287 LLSLVWKR-KILFLVVTLVSVFLIWKFYTYAHPYLLADNRHYTFYVWRRLFQRYPTLKYLLVPAYIFSGWFMLDSLKSKH 365 (446)
T ss_pred HHHHHHHc-chHHHHHHHHHHHHHHHhhhccCceEeecCceeeehHHHHHHhhhHHHHHHhhHHHHHHHHHHHhccccHH
Confidence 77777763 445666777888899999999999999999999999999999999999999999999999999986 45
Q ss_pred chhhHHHHHHHHHHhcCcCccccccchHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHhhhheeecceeeeCCCCCcce
Q psy10437 523 FKYFFLFTTCVFLNLVPQLLLELRYFIMPFILYRLHFNINSLKWWELALEFSFNSLINIVTIYIFFTKKFYWEDSADIQR 602 (619)
Q Consensus 523 ~~~~l~~~~~~~l~Lvp~pLvEpRYfiiP~vl~RL~~~~~~~~~~~l~lE~~~~~~iN~~t~yiFl~k~F~W~~~~~~QR 602 (619)
..+.+.|.+|...++|||||+|+||||+||++||+++|-++.+|+. +|+.|++++|++|.|+|+.|+|.|++|+++||
T Consensus 366 ift~l~f~ili~~viVPapLfE~RYfIlPyvfwRl~iplp~tsrl~--mefl~~m~~nvitl~if~~~tfqw~nep~lqr 443 (446)
T KOG2642|consen 366 IFTNLMFFILIFTVIVPAPLFEFRYFILPYVFWRLNIPLPPTSRLS--MEFLCYMVVNVITLYIFLNKTFQWPNEPDLQR 443 (446)
T ss_pred HHHHHHHHHHHHHHhcchhhcchhhhHHHHHHHhhcCCCCCcchHH--HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHh
Confidence 6788899999999999999999999999999999999988888987 89999999999999999999999988888999
Q ss_pred Eee
Q psy10437 603 IMC 605 (619)
Q Consensus 603 fm~ 605 (619)
|||
T Consensus 444 ~mw 446 (446)
T KOG2642|consen 444 FMW 446 (446)
T ss_pred hcC
Confidence 997
No 3
>KOG0368|consensus
Probab=100.00 E-value=7.1e-44 Score=409.38 Aligned_cols=197 Identities=23% Similarity=0.311 Sum_probs=182.6
Q ss_pred CcccccccccccCCCCCCceEEE------eechhHHHHHHHHHHHHHHhhHHhhccceeEEEEEeecCCCCCceeeEEEE
Q psy10437 1 MQNELKIHFKITNGDMHWNKKYD------YSSGNAIEESVTNMVMRYGPRLWKLRVLQAELRMTIRPTPSSKTTNVRLCL 74 (619)
Q Consensus 1 ~~deLe~~~~~~~~~~~~nhifl------~~~~~~le~~v~~~v~ryG~RLwrLrV~q~EIRi~i~~~~~g~~~p~Rvvi 74 (619)
++||||+|.+....++|+||||+ .+||+++|+++++|++|+|+|||+|||++||+|+++++.++|.+.|+|+++
T Consensus 1329 ald~leva~~~~~~~td~nhiFl~f~~~~~i~p~~~ee~v~~~~~~~g~Rl~~lrv~~aei~i~~~~~~t~~~~p~R~~i 1408 (2196)
T KOG0368|consen 1329 ALDELEVANNTDASKTDLNHIFLNFVPVVIIDPSKLEEAVRGILKRIGKRLWRLRVTEAEIRIIIRDPGTGAPGPLRLVI 1408 (2196)
T ss_pred HHHHhhhhhhcccccccccceeeecceeeccCHHHHHHHHHHHHHHHHHHHHHhhhceeeEEEEEecCCCCCCcceEEEE
Confidence 47999999333667899999999 378999999999999999999999999999999999999989999999999
Q ss_pred ECCCcceEEEEEEEEeecCCCCeEEEeeccccccccCCCcccccCCcccccccccCCCCCCCCccccccccccceeeccc
Q psy10437 75 ANDSGYYLDLCLYNEITDPKTGVLSHVVRAHLSFVHNHGLKITNGDVHWNKKYDYSSGNAPNPYIDEQFHIPQAAKFCKG 154 (619)
Q Consensus 75 sN~SGy~l~v~iY~Ev~d~~t~~v~~si~~~~~~g~lhg~~v~~~~~~~~~pYp~~~~~q~kr~~aEiFh~~~tt~Y~~y 154 (619)
+|+|||++++++|+|+++.++.++++|+| +.||+||+++++ |||+++++|+|||+| |+.+|| || |
T Consensus 1409 ~NesGyv~~~e~y~Ev~~~~~~~i~~s~g---k~g~~h~~~ist-------pY~~kd~lq~KR~~A---~~~gTT-Yi-Y 1473 (2196)
T KOG0368|consen 1409 SNESGYVVTTEVYTEVKERNGSLIFHSIG---KQGPLHGRPIST-------PYPPKDWLQPKRLAA---RRMGTT-YI-Y 1473 (2196)
T ss_pred EcccccEEEEEEEEeecccCcceeeeccC---CCCcccccccCC-------CCCCchhhcHHHHHH---HhcCCe-EE-e
Confidence 99999999999999999988999999999 899999999999 999999999999999 999999 99 9
Q ss_pred ccccchHHHHHHHHHcCCccccccccccccccCCCCCCC-----cccc-cCCcccccccCCCcceeeeeeeeehhh
Q psy10437 155 NFFESGNYAANRERAARPYFFIFYKFGHAFSTSLAMPRD-----ELVG-FQSKWDHKITTLPGLYLFSIGIFKPIG 224 (619)
Q Consensus 155 DFp~lfe~Al~~~W~~~~~~~~~~~~~~~~~~~~~~p~~-----ELvl-~~g~~d~~vtrpPGlN~iGMV~w~~~~ 224 (619)
|||++|++|+.++|++..+| .+...|++ |||+ ++|++ .+|+|+||+|.||||||+...
T Consensus 1474 DFP~~F~~a~~~~Wks~~~~-----------~k~~~~~~~f~~~ELV~de~g~L-~~vnR~pG~N~~GMVAw~~~~ 1537 (2196)
T KOG0368|consen 1474 DFPEMFRQAASKLWKSPSSG-----------VKVKLWDDFFQVKELVLDENGEL-TEVNREPGLNSCGMVAWKLTV 1537 (2196)
T ss_pred ecHHHHHHHHHHhhcCCCcc-----------cCCCcchhhheeeeeeecCCCcE-EEeccCCCCCcceeEEEEEEe
Confidence 99999999999999999662 34455665 9999 89999 999999999999999999643
No 4
>PF08326 ACC_central: Acetyl-CoA carboxylase, central region; InterPro: IPR013537 This region is found in various eukaryotic acetyl-CoA carboxylases, N-terminal to the catalytic domain (IPR000022 from INTERPRO). Enzymes containing this domain (6.4.1.2 from EC) are involved in the synthesis of long-chain fatty acids, as they catalyses the rate limiting step in this process. ; GO: 0003989 acetyl-CoA carboxylase activity, 0005524 ATP binding, 0006633 fatty acid biosynthetic process; PDB: 2DN8_A 2KCC_A 3COJ_H.
Probab=99.89 E-value=5e-25 Score=252.37 Aligned_cols=110 Identities=28% Similarity=0.451 Sum_probs=0.0
Q ss_pred Ccccccccccc-cCCCCCCceEEE------eechhHHHHHHHHHHHHHHhhHHhhccceeEEEEEeecCCCCCceeeEEE
Q psy10437 1 MQNELKIHFKI-TNGDMHWNKKYD------YSSGNAIEESVTNMVMRYGPRLWKLRVLQAELRMTIRPTPSSKTTNVRLC 73 (619)
Q Consensus 1 ~~deLe~~~~~-~~~~~~~nhifl------~~~~~~le~~v~~~v~ryG~RLwrLrV~q~EIRi~i~~~~~g~~~p~Rvv 73 (619)
.+||||+++++ +.+++|+||||| .+|++++|++++++++|||+|||||||+|||||++|+++++|+++|+|++
T Consensus 592 ~Ld~Le~a~~~~~~~~~d~Nhifln~~p~~~~~~~~le~~~~~~~~r~g~RL~rLrV~~vEir~~~~~~~~~~~~p~Rvv 671 (708)
T PF08326_consen 592 ALDALEVAQSNPRVKRTDCNHIFLNFWPELELDPEDLEAAVRGFVERYGRRLWRLRVTQVEIRIRIRDPSTGAPIPVRVV 671 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcccccccccCceEEEEEecccCCCHHHHHHHHHHHHHHHHHHHHhcCccEEEEEEEeccCCCCCccceEEE
Confidence 37999999999 677999999999 36789999999999999999999999999999999998888899999999
Q ss_pred EECCCcceEEEEEEEEeecCCCCeEEEeeccccccccCC
Q psy10437 74 LANDSGYYLDLCLYNEITDPKTGVLSHVVRAHLSFVHNH 112 (619)
Q Consensus 74 isN~SGy~l~v~iY~Ev~d~~t~~v~~si~~~~~~g~lh 112 (619)
|+|+|||++++++|+|++|++|+++++|+|+ +.||||
T Consensus 672 isn~sG~~~~v~~Y~E~~~~~g~~if~si~~--~~G~~h 708 (708)
T PF08326_consen 672 ISNPSGYVVKVEIYREVKDPKGEWIFKSIGS--KPGPLH 708 (708)
T ss_dssp ---------------------------------------
T ss_pred EECCCCCeEEEEEEEEEECCCCCEEEEECCC--CCCCCC
Confidence 9999999999999999999999999999994 789988
No 5
>TIGR03766 conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.
Probab=96.87 E-value=0.0097 Score=66.78 Aligned_cols=130 Identities=15% Similarity=0.163 Sum_probs=89.3
Q ss_pred ccCCCcceeeeeeeeeh-hhhhcccccCChhhHhhhhhHHHHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHHhhc
Q psy10437 206 ITTLPGLYLFSIGIFKP-IGLLLKYDICTVNILRSTNLICAIFNFYLIYEILKVKNISKDGIDQMSLFKILLSALNISTF 284 (619)
Q Consensus 206 vtrpPGlN~iGMV~w~~-~~~~~~~~~C~~~~LR~~Nl~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~a~~i~~f 284 (619)
..|-| |.+|.+...- +..++| ..+...+...|+++..+...+++.+.+++..++. ....++-.+++
T Consensus 113 ~~~yP--nn~g~~l~~~~l~kifg--~~~~~~~~llNil~~~~si~liy~i~k~lf~~~~---------a~~a~~l~~l~ 179 (483)
T TIGR03766 113 FSRNP--NNLFLLLFMHFLYKLFG--ETSWLFFDVVNIVLVDLSALILYKAVKKVFNKKK---------AFVALYLFVLL 179 (483)
T ss_pred eeECC--chHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh---------HHHHHHHHHHH
Confidence 45655 7777765432 223443 2345666999999988888899998887754322 23344445788
Q ss_pred chhhhhhhhhccchhHHHHHHHHHH---HHhhch--------hhHHHHHHHHHhhhhchhhhHHHHHHHHHHHhh
Q psy10437 285 PVLYFFSFLYYTDALSTSMVLLMYA---LNLQSK--------YQLSAAMGFFAVMVRQTNIIWVFYIATEIVLSD 348 (619)
Q Consensus 285 P~l~ff~fLyYTDv~St~~VL~~y~---~~l~~~--------~~lsal~g~~av~~RQTNIvWv~f~~~~~~~~~ 348 (619)
|+++++..-+|||.+++.+++++.. ...+++ -.+++++-.++.++|+++|+-+.......+...
T Consensus 180 ~~~~~y~~~~Ysd~~~l~~~~l~l~~~~~~~~~~~~~~~~~~~Il~gillal~~~iKp~~iI~liA~~i~~~l~~ 254 (483)
T TIGR03766 180 LALSPYILIPYTDTWVLPFVSLFLFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPSAIIFVIAIFIVLFLQL 254 (483)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 9999999999999999988876643 222211 156777777899999999999876666555543
No 6
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=96.51 E-value=0.042 Score=50.53 Aligned_cols=97 Identities=23% Similarity=0.255 Sum_probs=78.5
Q ss_pred ChhhHhhhhhHHHHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHHhhcchhhhhhhhhccchhHHHHHHHHHHHHh
Q psy10437 233 TVNILRSTNLICAIFNFYLIYEILKVKNISKDGIDQMSLFKILLSALNISTFPVLYFFSFLYYTDALSTSMVLLMYALNL 312 (619)
Q Consensus 233 ~~~~LR~~Nl~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~a~~i~~fP~l~ff~fLyYTDv~St~~VL~~y~~~l 312 (619)
+...+|..|.++.....+.+|++.|+...++ .....++-.++.|....++....+|..++.+.+++.....
T Consensus 20 ~~~~~~~~~~l~~~~~~~~~y~i~r~~~~~~---------~a~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (159)
T PF13231_consen 20 SVWALRLFNILFSLLTLLLIYLIARRLFGRR---------AALIAALLLALSPMFIFYSASARPDMLLLFFFLLALYAFY 90 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCch---------HHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999998864322 2356778889999999999999999999999888877654
Q ss_pred h---c----hhhHHHHHHHHHhhhhchhhhHHH
Q psy10437 313 Q---S----KYQLSAAMGFFAVMVRQTNIIWVF 338 (619)
Q Consensus 313 ~---~----~~~lsal~g~~av~~RQTNIvWv~ 338 (619)
+ + .-.+++++..++.+.|.++++=..
T Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~~k~~~~~~~~ 123 (159)
T PF13231_consen 91 RYIKSKKWRWWILAGLLLGLAFLTKYTFLLLIP 123 (159)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 1 125788888999999999865444
No 7
>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Dolichyl-phosphate-mannose-protein mannosyltransferase proteins 2.4.1.109 from EC belong to the glycosyltransferase family 39 (GT39 from CAZY) and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. The transfer of mannose to seryl and threonyl residues of secretory proteins is catalyzed by a family of protein mannosyltransferases in Saccharomyces cerevisiae coded for by seven genes (PMT1-7). Protein O-glycosylation is essential for cell wall rigidity and cell integrity and this protein modification is vital for S. cerevisiae [].; GO: 0000030 mannosyltransferase activity, 0006493 protein O-linked glycosylation, 0016020 membrane
Probab=90.45 E-value=3.5 Score=41.69 Aligned_cols=95 Identities=20% Similarity=0.113 Sum_probs=73.9
Q ss_pred CChhhHhhhhhHHHHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHHhhcchhhhhhhhhccchhHHHHHHHHHHHH
Q psy10437 232 CTVNILRSTNLICAIFNFYLIYEILKVKNISKDGIDQMSLFKILLSALNISTFPVLYFFSFLYYTDALSTSMVLLMYALN 311 (619)
Q Consensus 232 C~~~~LR~~Nl~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~a~~i~~fP~l~ff~fLyYTDv~St~~VL~~y~~~ 311 (619)
.+...+|..|+++..++..+++.+.+++..+ ...+...++-+++-|.++..|-..-+|..-+++++++....
T Consensus 80 ~~~~~~R~~~~l~~~~~~~l~y~~~~~~~~s--------~~~al~aa~l~~~~~~~~~~sr~~~~D~~l~~f~~la~~~~ 151 (245)
T PF02366_consen 80 VNYWAARLPSALFGALTVPLVYLILRRLFGS--------RRAALLAALLLALDPSLIVQSRYALLDSILLFFILLAIYCL 151 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------hhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5568999999999999999999988876432 33457788888999999999999999999998887776554
Q ss_pred hhc------------hhhHHHHHHHHHhhhhchhh
Q psy10437 312 LQS------------KYQLSAAMGFFAVMVRQTNI 334 (619)
Q Consensus 312 l~~------------~~~lsal~g~~av~~RQTNI 334 (619)
.+- ...++++...+|++.+.+=.
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~gi~lGla~~~K~~~~ 186 (245)
T PF02366_consen 152 LRWYRYQPFRRKWWLWLLLAGIALGLAILTKGPGL 186 (245)
T ss_pred HHHHhccccccccHHHHHHHHHHHHHHHHhchhHH
Confidence 332 12566777778899986644
No 8
>PF04188 Mannosyl_trans2: Mannosyltransferase (PIG-V)); InterPro: IPR007315 This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI [], [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=85.90 E-value=10 Score=42.50 Aligned_cols=71 Identities=21% Similarity=0.260 Sum_probs=57.9
Q ss_pred HHHHHHHhhcchhhhhhhhhccchhHHHHHHHHHHHHhhchhhHHHHHHHHHhhhhchhhhHHHHHHHHHHH
Q psy10437 275 LLSALNISTFPVLYFFSFLYYTDALSTSMVLLMYALNLQSKYQLSAAMGFFAVMVRQTNIIWVFYIATEIVL 346 (619)
Q Consensus 275 ~~~a~~i~~fP~l~ff~fLyYTDv~St~~VL~~y~~~l~~~~~lsal~g~~av~~RQTNIvWv~f~~~~~~~ 346 (619)
...++-.++.|--.|++.. ||+.+...+.+.+++...+++.+.+++++.+|-.+|-+=|+-+++.+...+.
T Consensus 145 ~~a~ll~~~~PasiF~sa~-YsEslf~~lsf~gl~~~~~~~~~~a~~~~~la~~~RsnGll~~~~~~~~~l~ 215 (443)
T PF04188_consen 145 LLAALLFIFSPASIFLSAP-YSESLFALLSFAGLYLLERGRWWLAGLLFALATLTRSNGLLLAGFFAYELLG 215 (443)
T ss_pred HHHHHHHHHccHHHHhhcC-ccHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3455655777887788766 8999999999999999888899999999999999998888887776655443
No 9
>COG5542 Predicted integral membrane protein [Function unknown]
Probab=77.16 E-value=7.3 Score=43.45 Aligned_cols=95 Identities=17% Similarity=0.131 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHH-hhcchhhhhhhhh-ccchhHHHHHHHHHHHHhhchhhH
Q psy10437 241 NLICAIFNFYLIYEILKVKNISKDGIDQMSLFKILLSALNI-STFPVLYFFSFLY-YTDALSTSMVLLMYALNLQSKYQL 318 (619)
Q Consensus 241 Nl~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~a~~i-~~fP~l~ff~fLy-YTDv~St~~VL~~y~~~l~~~~~l 318 (619)
|.+...+..+.+|++.|..... .+....|+.+ ++.|...++|.+| =||-.=|+...++.++.-+++...
T Consensus 123 s~~~~~~~ay~lY~~tk~~y~~---------~~~a~fa~i~~~~~P~~i~~s~iw~~teSlf~ll~~l~iyf~~~k~~~~ 193 (420)
T COG5542 123 SNIADFVAAYFLYKITKLRYGL---------GSMARFATILVILSPSVIYNSAIWGQTESLFTLLSILAIYFFSIKKQIP 193 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHccc---------chhhhheEEEEEeccHHHhhhhHHhccchHHHHHHHHHHHHHHccchhH
Confidence 3344456667778877665432 1223344444 5556666666663 299999999999988888888999
Q ss_pred HHHHHHHHhhhhchhhhHHHHHHHHH
Q psy10437 319 SAAMGFFAVMVRQTNIIWVFYIATEI 344 (619)
Q Consensus 319 sal~g~~av~~RQTNIvWv~f~~~~~ 344 (619)
|++++.+|.++|-+-|+|.-+.+--.
T Consensus 194 a~~~faLa~l~Rsngi~~~p~fl~~~ 219 (420)
T COG5542 194 ALFFFALATLFRSNGIFLSPLFLIPL 219 (420)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHH
Confidence 99999999999999999988665443
No 10
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with Pfam family pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=76.91 E-value=9.3 Score=42.91 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=69.1
Q ss_pred CChhhHhhhhhHHHHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHHhhcchhhhhhhhhccchhHHHHHHHHHHHH
Q psy10437 232 CTVNILRSTNLICAIFNFYLIYEILKVKNISKDGIDQMSLFKILLSALNISTFPVLYFFSFLYYTDALSTSMVLLMYALN 311 (619)
Q Consensus 232 C~~~~LR~~Nl~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~a~~i~~fP~l~ff~fLyYTDv~St~~VL~~y~~~ 311 (619)
-+....|...+++.+..+. ++.+.++... .......|+-+++-|....+|-+.=+|+..+++.+++....
T Consensus 68 ~se~a~RL~~aL~g~~v~l-~~~~~r~~~~---------~~~al~AAllla~sp~~~~~sr~~~~D~~l~~f~~lal~~l 137 (439)
T TIGR03663 68 ISDATARLLPAVFGVLLPL-TAWLYRKRLG---------DNEVLWAAVLLAFSPVMVYYSRFMRNDIFVAFFTLLAVGAA 137 (439)
T ss_pred CCHHHHHHHHHHHHHHHHH-HHHHHHHHcC---------cHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4678999999998755444 4444333221 11347788888999999999999999999998887776654
Q ss_pred hh---ch----hhHHHHHHHHHhhhhchhhhHHHH
Q psy10437 312 LQ---SK----YQLSAAMGFFAVMVRQTNIIWVFY 339 (619)
Q Consensus 312 l~---~~----~~lsal~g~~av~~RQTNIvWv~f 339 (619)
.+ ++ ..++++...++++...+-.+-.+.
T Consensus 138 ~r~~~~~~~~~~~lag~~~gLa~ltKg~~~l~~~~ 172 (439)
T TIGR03663 138 FRYLDTGKRRYLFLAASALALAFTSKENAYLIILI 172 (439)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 11 256777777889999886655543
No 11
>PRK13279 arnT 4-amino-4-deoxy-L-arabinose transferase; Provisional
Probab=71.65 E-value=1.5e+02 Score=34.73 Aligned_cols=89 Identities=13% Similarity=-0.000 Sum_probs=63.9
Q ss_pred ccccCCCcceeeeeeeeehhhhhcccccCChhhHhhhhhHHHHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHHhh
Q psy10437 204 HKITTLPGLYLFSIGIFKPIGLLLKYDICTVNILRSTNLICAIFNFYLIYEILKVKNISKDGIDQMSLFKILLSALNIST 283 (619)
Q Consensus 204 ~~vtrpPGlN~iGMV~w~~~~~~~~~~~C~~~~LR~~Nl~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~a~~i~~ 283 (619)
.-.+.||..+.+++...+ ++| -+....|..|++++++..++++.+-+++..++ ......++...+
T Consensus 58 ~y~eKPPL~yWl~Als~~----LFG---~~~~a~RLpsaL~~~lt~llvy~larrl~~~r--------~~AllAaLIlls 122 (552)
T PRK13279 58 RYFEKPIAGYWINSIGQW----LFG---DNNFGVRFGSVFSTLLSALLVYWLALRLWRDR--------RTALLAALIYLS 122 (552)
T ss_pred cCCCCCcHHHHHHHHHHH----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--------HHHHHHHHHHHH
Confidence 445899999887766444 344 24578999999998888888888877764322 123566777788
Q ss_pred cchhhhhhhhhccchhHHHHHHHH
Q psy10437 284 FPVLYFFSFLYYTDALSTSMVLLM 307 (619)
Q Consensus 284 fP~l~ff~fLyYTDv~St~~VL~~ 307 (619)
.|.++..+..--+|..-+.++.++
T Consensus 123 ~~~v~~~g~~a~~D~~l~~fi~la 146 (552)
T PRK13279 123 LFLVYGIGTYAVLDPMITLWLTAA 146 (552)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 888888888778898777666543
No 12
>PF09594 DUF2029: Protein of unknown function (DUF2029); InterPro: IPR018584 This is a putative transmembrane protein from prokaryotes. It is likely to be conserved between Mycobacterium species []. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=68.66 E-value=42 Score=33.03 Aligned_cols=61 Identities=16% Similarity=0.051 Sum_probs=48.2
Q ss_pred HHHhhcchhhhhhhhhccchhHHHHHHHHHHHHhhchhhHHHHHHHHHhhhhchhhhHHHHH
Q psy10437 279 LNISTFPVLYFFSFLYYTDALSTSMVLLMYALNLQSKYQLSAAMGFFAVMVRQTNIIWVFYI 340 (619)
Q Consensus 279 ~~i~~fP~l~ff~fLyYTDv~St~~VL~~y~~~l~~~~~lsal~g~~av~~RQTNIvWv~f~ 340 (619)
..+++.|+ .-=...--+|+....+++.++....++|.++++++-.++...+|+-++-..+.
T Consensus 60 ~~~~~~p~-~~~~~~gq~~~l~~~l~~~a~~~~~r~r~~~agv~lgla~~~K~~p~~~l~~l 120 (241)
T PF09594_consen 60 LLLAFPPV-LSALGLGQFDLLVAALLLLALLALRRGRPWLAGVLLGLAAAIKLYPALLLPAL 120 (241)
T ss_pred HHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555 44444468899999999999999888888899988889999999988877744
No 13
>PF09913 DUF2142: Predicted membrane protein (DUF2142); InterPro: IPR018674 This family of conserved hypothetical proteins has no known function.
Probab=67.21 E-value=82 Score=34.06 Aligned_cols=111 Identities=21% Similarity=0.152 Sum_probs=69.7
Q ss_pred CCCcceeeeeeeeehhhhhccccc-CChhhHhhhhhHHHHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHHhhcch
Q psy10437 208 TLPGLYLFSIGIFKPIGLLLKYDI-CTVNILRSTNLICAIFNFYLIYEILKVKNISKDGIDQMSLFKILLSALNISTFPV 286 (619)
Q Consensus 208 rpPGlN~iGMV~w~~~~~~~~~~~-C~~~~LR~~Nl~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~a~~i~~fP~ 286 (619)
-+|..|...-+..+... +.+.+. -+...-|..|+++..+..+++.++.++ .+ ...+.+++.|.
T Consensus 95 y~p~~Ylp~alGi~ig~-ll~l~~~~~~~l~Rl~nll~~~~l~~~Ai~~~p~-------------~k--~l~~~i~l~Pm 158 (389)
T PF09913_consen 95 YPPLYYLPQALGIWIGR-LLGLSVLVMYYLGRLFNLLLYALLVYLAIKLAPR-------------GK--WLLALIALLPM 158 (389)
T ss_pred CCcHhhHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcch-------------hH--HHHHHHHHHHH
Confidence 45655555444333322 222221 224788999999977777776665432 11 23788899999
Q ss_pred hhhhhhhhccchhHHHHHHHHHHHHhh--ch-------hhHHHHHHHHHhhhhchhh
Q psy10437 287 LYFFSFLYYTDALSTSMVLLMYALNLQ--SK-------YQLSAAMGFFAVMVRQTNI 334 (619)
Q Consensus 287 l~ff~fLyYTDv~St~~VL~~y~~~l~--~~-------~~lsal~g~~av~~RQTNI 334 (619)
..+.+.=+-.|.....++.++..+.++ ++ -...++.+++.++.|.+.+
T Consensus 159 ~~~~~aS~s~D~~~~~~~~l~~a~~l~~~~~~~~~~~~~~~l~v~~~ll~~~K~~y~ 215 (389)
T PF09913_consen 159 TLFQAASVSYDGLIIALAFLFIALLLRLYRKKKITRRDLILLGVLAVLLALSKPPYI 215 (389)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999888777666665554 11 1556666667788884333
No 14
>COG1807 ArnT 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
Probab=56.82 E-value=57 Score=36.98 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=80.3
Q ss_pred ccccCCCcceeeeeeeeehhhhhcccccCChhhHhhhhhHHHHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHHhh
Q psy10437 204 HKITTLPGLYLFSIGIFKPIGLLLKYDICTVNILRSTNLICAIFNFYLIYEILKVKNISKDGIDQMSLFKILLSALNIST 283 (619)
Q Consensus 204 ~~vtrpPGlN~iGMV~w~~~~~~~~~~~C~~~~LR~~Nl~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~a~~i~~ 283 (619)
.-.++||..|.+.-...+ ++| -+....|..+.+......+++|.+-|.+..+ ......++.+++
T Consensus 60 ~~~~kPPl~~Wl~a~~~~----lfG---~~~~~~rl~~~l~~~~~~~l~y~l~k~l~~~---------~~a~~aali~~~ 123 (535)
T COG1807 60 PYFEKPPLVYWLQALSYL----LFG---VNEWSARLPSALAGALTALLVYWLAKRLFGR---------LAALLAALILLL 123 (535)
T ss_pred cccCCCcHHHHHHHHHHH----HcC---cchHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------HHHHHHHHHHHH
Confidence 567899998888764333 354 3467899999988778888888887776432 235788899999
Q ss_pred cchhhhhhhhhccchhHHHHHHHHHHHHhh---c--hh---hHHHHHHHHHhhhhchhh
Q psy10437 284 FPVLYFFSFLYYTDALSTSMVLLMYALNLQ---S--KY---QLSAAMGFFAVMVRQTNI 334 (619)
Q Consensus 284 fP~l~ff~fLyYTDv~St~~VL~~y~~~l~---~--~~---~lsal~g~~av~~RQTNI 334 (619)
+|+.+-.+-++=+|..-+.++.++.....+ + +. ++..+.-.++++.+.+=+
T Consensus 124 ~p~~~~~~~~~~~D~~l~~f~~la~~~~~~~~~~~~~~~~~l~~gl~lGL~~ltKg~~~ 182 (535)
T COG1807 124 TPLFFLIGRLALLDAALAFFLTLALALLYLALRARGKLKWLLLLGLALGLGFLTKGPGA 182 (535)
T ss_pred HHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHhchHH
Confidence 999999999999999988877666554332 1 11 333344445566665543
No 15
>PF03901 Glyco_transf_22: Alg9-like mannosyltransferase family; InterPro: IPR005599 Members of this family are glycosylphosphatidylinositol mannosyltransferase enzymes 2.4.1.- from EC [, ]. At least some members are localised in endoplasmic reticulum and involved in GPI anchor biosynthesis [, ]. In yeast the SMP3 (YOR149C) has been implemented in plasmid stability [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0006506 GPI anchor biosynthetic process, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=49.38 E-value=1.6e+02 Score=32.33 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=70.1
Q ss_pred hhhHhhhhhHHHHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHHhhcchhhhhhhhhccchhHHHHHHHHHHHHhh
Q psy10437 234 VNILRSTNLICAIFNFYLIYEILKVKNISKDGIDQMSLFKILLSALNISTFPVLYFFSFLYYTDALSTSMVLLMYALNLQ 313 (619)
Q Consensus 234 ~~~LR~~Nl~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~a~~i~~fP~l~ff~fLyYTDv~St~~VL~~y~~~l~ 313 (619)
....|..-.+++...-+.+++..++...+.- +....+-.++-+..++++-=.+.+..++.+++.++....+
T Consensus 81 ~~~~Rl~~~~~s~~~d~~~~~~~~~~~~~~~---------a~~~l~l~~~s~~~~~~~~Rtlsns~e~~l~~~al~~~~~ 151 (418)
T PF03901_consen 81 FYAPRLVLALLSALSDYYLYRLVKRLFGSSV---------ALWALLLSLFSWFMFYYSSRTLSNSFETILVLLALYLWLR 151 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCch---------hhhhhhHHHhhhHHHHhhcccCccHHHHHHHHHHHHHHHH
Confidence 4678888877777777777776555332211 1222233355566777888888999999999988888775
Q ss_pred ------------chhhHHHHHHHHHhhhhchhhhHHHHHHHHHH
Q psy10437 314 ------------SKYQLSAAMGFFAVMVRQTNIIWVFYIATEIV 345 (619)
Q Consensus 314 ------------~~~~lsal~g~~av~~RQTNIvWv~f~~~~~~ 345 (619)
++...+++++.+|+++|-|+++=.+..+...+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~Rpt~~~~~~pl~l~~l 195 (418)
T PF03901_consen 152 SLSRSNSSSSSKRYLLAIGLLAGLAVFFRPTSALFWLPLGLYLL 195 (418)
T ss_pred hhccCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23377788899999999999875554444433
No 16
>PLN02816 mannosyltransferase
Probab=32.22 E-value=3.5e+02 Score=31.59 Aligned_cols=24 Identities=17% Similarity=0.463 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhhhhchhhh-HHHHH
Q psy10437 317 QLSAAMGFFAVMVRQTNII-WVFYI 340 (619)
Q Consensus 317 ~lsal~g~~av~~RQTNIv-Wv~f~ 340 (619)
..+..++.+|+.+|-||++ |+...
T Consensus 201 ~~~L~la~la~~iRPt~ailwl~l~ 225 (546)
T PLN02816 201 KWGLVIAALACAIRPTSAVIWLYVG 225 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777789999999986 76553
No 17
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=25.57 E-value=6.6e+02 Score=28.14 Aligned_cols=109 Identities=16% Similarity=0.091 Sum_probs=73.9
Q ss_pred CChhhHhhhhhHHHHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHHhhcchhhhh-hhhhccchhHHHHHHHHHHH
Q psy10437 232 CTVNILRSTNLICAIFNFYLIYEILKVKNISKDGIDQMSLFKILLSALNISTFPVLYFF-SFLYYTDALSTSMVLLMYAL 310 (619)
Q Consensus 232 C~~~~LR~~Nl~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~a~~i~~fP~l~ff-~fLyYTDv~St~~VL~~y~~ 310 (619)
-+...|=....++.....+.++++-++.-. +.......++...+.|.++.- .|=|..|...+-++++++..
T Consensus 57 Ps~~tLli~Qal~la~~~~pl~~lar~~~~--------~~~~a~~~~~~ylL~p~~~~~~~~dFH~~~~avPll~~~~~~ 128 (449)
T PF09852_consen 57 PSPLTLLIVQALLLALGAIPLYRLARRRLL--------SRRLALLIALAYLLSPGLQGANLFDFHPVAFAVPLLLWALYA 128 (449)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHHhHHHHhhhhCCCcHHHHHHHHHHHHHHH
Confidence 355666666666655556666777665321 123345666666777887754 34567788887677777777
Q ss_pred HhhchhhHHHHHHHHHhhhhchhhhHHHHHHHHHHHhh
Q psy10437 311 NLQSKYQLSAAMGFFAVMVRQTNIIWVFYIATEIVLSD 348 (619)
Q Consensus 311 ~l~~~~~lsal~g~~av~~RQTNIvWv~f~~~~~~~~~ 348 (619)
..+++.....++.++++++|-.--+-++.++...+.++
T Consensus 129 ~~~~r~~~~~~~~ll~llvKEd~~l~v~~~gl~~~~~~ 166 (449)
T PF09852_consen 129 LERRRWRLFILWALLLLLVKEDLGLTVAGIGLYLLLRR 166 (449)
T ss_pred HHhCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC
Confidence 77788888999999999999887777776666555553
No 18
>KOG1168|consensus
Probab=25.34 E-value=36 Score=36.61 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=22.0
Q ss_pred chhHHHHHHHHHHHHHHhhHHhhccceeEEE
Q psy10437 26 SGNAIEESVTNMVMRYGPRLWKLRVLQAELR 56 (619)
Q Consensus 26 ~~~~le~~v~~~v~ryG~RLwrLrV~q~EIR 56 (619)
||.++| .|.||+.+|=.||||+|++|-
T Consensus 215 DPReLE----aFAErFKQRRIKLGVTQADVG 241 (385)
T KOG1168|consen 215 DPRELE----AFAERFKQRRIKLGVTQADVG 241 (385)
T ss_pred CHHHHH----HHHHHHHhhhhhhcccHHHHH
Confidence 455555 567999999999999999985
No 19
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=23.80 E-value=4.2e+02 Score=28.19 Aligned_cols=89 Identities=27% Similarity=0.283 Sum_probs=46.4
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHhhccccCCccchhhHHHHHHH-----HH-HhhcchhhhhhhhhccchhHHHHHHHHHH
Q psy10437 236 ILRSTNLICAIFNFYLIYEILKVKNISKDGIDQMSLFKILLSA-----LN-ISTFPVLYFFSFLYYTDALSTSMVLLMYA 309 (619)
Q Consensus 236 ~LR~~Nl~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~a-----~~-i~~fP~l~ff~fLyYTDv~St~~VL~~y~ 309 (619)
.+=..|.+...++.++..+++|+.. +.++.++.| .. +.++|..-++...-.-=+.|..+|..++.
T Consensus 7 v~~l~Nf~~d~~LL~~t~~~lk~~~---------~~~Rll~ga~iGa~~~~~~~~p~~~~~~~~~~k~~~s~lmv~iafg 77 (288)
T TIGR02854 7 VVFLENFIIDYFLLYLTARTLKDKV---------SQWRLLLAALIGSLYVLFMFTPKASFFTSPIAKLLYSFLIIFIAFG 77 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc---------hHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456788888888888888776521 112211111 11 12445544444433444567777777765
Q ss_pred HHhhch--------hhHHHHHHH--HHhhh-hchh
Q psy10437 310 LNLQSK--------YQLSAAMGF--FAVMV-RQTN 333 (619)
Q Consensus 310 ~~l~~~--------~~lsal~g~--~av~~-RQTN 333 (619)
....+. +..|.++|. +++.+ =|||
T Consensus 78 ~~~~~~f~k~~~~fy~~sf~~gG~~~~~~~~~~~~ 112 (288)
T TIGR02854 78 PKSLRFFLKLLFLFYFVSFATGGGLFALHFFLATN 112 (288)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhHHHhhhhhhccC
Confidence 532222 244556665 44444 4544
No 20
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=22.25 E-value=1.1e+02 Score=34.54 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=37.6
Q ss_pred HHhhccceeEEEEEeecCCC---CCceeeEEEEECCCcceEEEEEEEEeec
Q psy10437 45 LWKLRVLQAELRMTIRPTPS---SKTTNVRLCLANDSGYYLDLCLYNEITD 92 (619)
Q Consensus 45 LwrLrV~q~EIRi~i~~~~~---g~~~p~RvvisN~SGy~l~v~iY~Ev~d 92 (619)
+.|+.|...|+++.+..++. |.++.+++.|.|+|.+.++.++--|-.|
T Consensus 461 lP~~~v~~~~~~v~~~~p~~~~~~~~~~l~~~I~N~T~~~~~~~~~me~s~ 511 (554)
T PF07919_consen 461 LPRVNVPSSPLRVLASVPPSAIVGEPFTLSYTIENPTNHFQTFELSMEPSD 511 (554)
T ss_pred cCceEccCCCcEEEEecCCccccCcEEEEEEEEECCCCccEEEEEEEccCC
Confidence 56677777888887766443 4688999999999999999999765433
No 21
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=21.63 E-value=32 Score=28.89 Aligned_cols=10 Identities=60% Similarity=1.195 Sum_probs=7.7
Q ss_pred ccCCCCccch
Q psy10437 480 TLADNRHYTF 489 (619)
Q Consensus 480 lLADNRHYtF 489 (619)
.++|.|||+|
T Consensus 41 V~eDgR~y~F 50 (62)
T PF15513_consen 41 VMEDGRHYTF 50 (62)
T ss_pred EEeCCCEEEE
Confidence 4778888877
No 22
>COG3518 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.70 E-value=2.8e+02 Score=27.43 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=28.5
Q ss_pred cCCCCCCceEEE--eechhHHHHHHHHHHHHHHhhHHhh
Q psy10437 12 TNGDMHWNKKYD--YSSGNAIEESVTNMVMRYGPRLWKL 48 (619)
Q Consensus 12 ~~~~~~~nhifl--~~~~~~le~~v~~~v~ryG~RLwrL 48 (619)
.++-+|.|-+++ .-|-.+++.++++.+++|-.||-+.
T Consensus 69 nYGLpdl~g~~~~~~~~~~~i~r~I~~~Ie~fEPRL~~V 107 (157)
T COG3518 69 NYGLPDLSGATLSLFRDSHQIARAIRAAIERFEPRLSRV 107 (157)
T ss_pred hcCCCChhhhhccccccHHHHHHHHHHHHHHhCchhhhe
Confidence 455667777775 2455779999999999999999843
No 23
>PF02078 Synapsin: Synapsin, N-terminal domain; InterPro: IPR020897 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represents the pre-ATP-grasp structural domain found in synapsins, which precedes the ATP-grasp domain. The structure of the pre-ATP-grasp domain consists of alpha/beta/alpha in three layers, and is possibly a rudiment form of the Rossmann-fold. This domain can have a substrate-binding function.; GO: 0007269 neurotransmitter secretion, 0008021 synaptic vesicle; PDB: 1PX2_A 1PK8_F 2P0A_A 1AUV_B 1AUX_A 1I7N_A 1I7L_A.
Probab=20.43 E-value=33 Score=31.65 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=25.3
Q ss_pred HhhH---HhhccceeEEEEEeecCCCCCceeeEEEEECCCcceEEEEEEEEeecCCCCeEEEeec
Q psy10437 42 GPRL---WKLRVLQAELRMTIRPTPSSKTTNVRLCLANDSGYYLDLCLYNEITDPKTGVLSHVVR 103 (619)
Q Consensus 42 G~RL---wrLrV~q~EIRi~i~~~~~g~~~p~RvvisN~SGy~l~v~iY~Ev~d~~t~~v~~si~ 103 (619)
|+|+ |.+||-|+|.+ -+=++..+.+|+.++++.+|. +..+.+|..
T Consensus 25 Gkki~Ge~dIrVEQAeFs------------ei~L~a~s~~g~~Vd~~~~r~-----g~Kv~Rsfk 72 (105)
T PF02078_consen 25 GKKIHGEYDIRVEQAEFS------------EINLVAHSDGGCTVDMQVLRN-----GTKVVRSFK 72 (105)
T ss_dssp T-EETTTEEEEEEEE-GG------------GEEEEEETTS-EEEEEEEEET-----TCEEEEEE-
T ss_pred CCccCCceEEEEEEeeee------------EEEEEEEcCCCEEEEEEeeeC-----Cceeeeccc
Confidence 6665 55666666664 223455667799999988773 334555543
Done!