Query psy10437
Match_columns 619
No_of_seqs 232 out of 383
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 18:09:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k8x_A Acetyl-COA carboxylase; 99.6 2.5E-16 8.6E-21 178.8 -0.4 88 109-222 1-94 (758)
2 2x24_A Acetyl-COA carboxylase; 99.2 4.5E-12 1.5E-16 145.3 1.5 94 105-222 16-110 (793)
3 3rce_A Oligosaccharide transfe 42.9 1.7E+02 0.0057 33.8 12.4 83 235-326 101-189 (724)
4 2p9r_A Alpha-2-M, alpha-2-macr 7.7 3E+02 0.01 22.7 3.5 36 65-100 16-52 (102)
5 4g59_C M152 protein, retinoic 7.5 2.4E+02 0.0084 29.3 3.2 50 52-104 232-281 (321)
6 2i8b_A Minor nucleoprotein VP3 7.0 2.9E+02 0.01 25.3 3.1 43 293-335 16-64 (152)
7 2kaa_A Hirsutellin A, HTA; rib 6.5 2.5E+02 0.0085 25.6 2.4 17 64-80 88-104 (130)
8 2jvw_A Uncharacterized protein 5.7 57 0.002 27.9 -2.1 19 28-46 15-33 (88)
9 3dd7_B PHD, prevent HOST death 5.7 3.5E+02 0.012 17.8 2.1 19 30-48 2-20 (23)
10 2k4v_A Uncharacterized protein 5.4 5.6E+02 0.019 23.2 4.0 19 80-98 21-40 (125)
No 1
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A
Probab=99.56 E-value=2.5e-16 Score=178.79 Aligned_cols=88 Identities=18% Similarity=0.198 Sum_probs=75.7
Q ss_pred ccCCCcccccCCcccccccccCCCCCCCCccccccccccceeecccccccchHHHHHHHHHcCCccccccccccccccCC
Q psy10437 109 VHNHGLKITNGDVHWNKKYDYSSGNAPNPYIDEQFHIPQAAKFCKGNFFESGNYAANRERAARPYFFIFYKFGHAFSTSL 188 (619)
Q Consensus 109 g~lhg~~v~~~~~~~~~pYp~~~~~q~kr~~aEiFh~~~tt~Y~~yDFp~lfe~Al~~~W~~~~~~~~~~~~~~~~~~~~ 188 (619)
||+||+|+++ |||+++.+|+|||+| |+.+|| || ||||++|++|++++|++... ..
T Consensus 1 g~~~~~~~~~-------py~~~~~~~~kr~~a---~~~~t~-y~-yd~~~l~~~~~~~~w~~~~~-------------~~ 55 (758)
T 3k8x_A 1 GSMHLRPIAT-------PYPVKEWLQPKRYKA---HLMGTT-YV-YDFPELFRQASSSQWKNFSA-------------DV 55 (758)
T ss_dssp ----CCCCCC-------SSCCHHHHSHHHHHH---HHTTSC-CG-GGHHHHHHHHHHHHHHHHCT-------------TC
T ss_pred CCcCCcccCC-------CCCCcchhhHHHHHH---HHcCCe-ee-cchHHHHHHHHHHHHHhccc-------------cc
Confidence 6999999999 999999999999999 999999 99 99999999999999977532 22
Q ss_pred CCCCC-----cccc-cCCcccccccCCCcceeeeeeeeeh
Q psy10437 189 AMPRD-----ELVG-FQSKWDHKITTLPGLYLFSIGIFKP 222 (619)
Q Consensus 189 ~~p~~-----ELvl-~~g~~d~~vtrpPGlN~iGMV~w~~ 222 (619)
..|++ ||++ ++|++ .+++|+||.|++|||+|..
T Consensus 56 ~~~~~~~~~~el~l~~~~~L-~~~~r~~G~nd~gmV~g~~ 94 (758)
T 3k8x_A 56 KLTDDFFISNELIEDENGEL-TEVEREPGANAIGMVAFKI 94 (758)
T ss_dssp CCCGGGEEEEEEEECTTSCE-EEECCCTTCCSSSEEEEEE
T ss_pred cCCCccceEEEEEEcCCCCe-ehhhcCCCCCCceEEEEEE
Confidence 34454 9999 78999 9999999999999999983
No 2
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*
Probab=99.16 E-value=4.5e-12 Score=145.28 Aligned_cols=94 Identities=16% Similarity=0.064 Sum_probs=59.8
Q ss_pred ccccccCCCcccccCCcccccccccCCCCCCCCccccccccccceeecccccccchHHHHHHHHHcCCcccccccccccc
Q psy10437 105 HLSFVHNHGLKITNGDVHWNKKYDYSSGNAPNPYIDEQFHIPQAAKFCKGNFFESGNYAANRERAARPYFFIFYKFGHAF 184 (619)
Q Consensus 105 ~~~~g~lhg~~v~~~~~~~~~pYp~~~~~q~kr~~aEiFh~~~tt~Y~~yDFp~lfe~Al~~~W~~~~~~~~~~~~~~~~ 184 (619)
+++.|++||+|+++ |||.++.+|+||++| |..+|+ || ||||++|++|++++|++... |
T Consensus 16 ~~~~g~~~~~~~~~-------p~~~~~~l~~kr~~a---~~~g~~-y~-yd~~~~~~~a~~~~w~~~~~--------~-- 73 (793)
T 2x24_A 16 PRGSGPQHGMLINT-------PYVTKDLLQAKRFQA---QSLGTT-YV-YDFPEMFRQALFKMWPSPDK--------Y-- 73 (793)
T ss_dssp ----------------------------CTTHHHHH---HHTTSC-CG-GGHHHHHHHHHHHHSCSSSC--------C--
T ss_pred CCCCCCCCCCCCCC-------CCCCHHHHHHHHHHH---HHcCCc-cc-cccHHHHHHHHHHhhhhccc--------C--
Confidence 34779999999999 999999999999999 999999 99 99999999999999986311 0
Q ss_pred ccCCCCCCCcccccC-CcccccccCCCcceeeeeeeeeh
Q psy10437 185 STSLAMPRDELVGFQ-SKWDHKITTLPGLYLFSIGIFKP 222 (619)
Q Consensus 185 ~~~~~~p~~ELvl~~-g~~d~~vtrpPGlN~iGMV~w~~ 222 (619)
.+......|+++++ |++ .++.+++|.|++|||+|..
T Consensus 74 -~~~~l~~~elllD~~gsf-~E~~~~~~~~~~GmV~g~~ 110 (793)
T 2x24_A 74 -PKDILTYTELVLDPQGQL-VEMNRLPGGNEVGMVAFKM 110 (793)
T ss_dssp -CTTSEEEEEEEECTTSCE-ECCCCCTTCCSSSEEEEEE
T ss_pred -CCCchhHHHHhcCCCCCE-EEeCCccCCCCCCeeeeee
Confidence 01122223888855 999 9999999999999999984
No 3
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=42.85 E-value=1.7e+02 Score=33.79 Aligned_cols=83 Identities=17% Similarity=0.079 Sum_probs=52.3
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHhhccccCCccchhhHHHHHHHHHHhhcchhhhhhhh--hccchhHHHHHHHHHHHHh
Q psy10437 235 NILRSTNLICAIFNFYLIYEILKVKNISKDGIDQMSLFKILLSALNISTFPVLYFFSFL--YYTDALSTSMVLLMYALNL 312 (619)
Q Consensus 235 ~~LR~~Nl~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~a~~i~~fP~l~ff~fL--yYTDv~St~~VL~~y~~~l 312 (619)
...+..-.+++....+.+|-+.|++..+ .-.+..|+-++.-|-...=|.. |-||...+++.++++++..
T Consensus 101 ~v~~~lp~ifg~L~vi~~yll~~el~~~---------~aGl~AAll~ai~P~~i~RS~aG~~D~e~l~i~~~ll~~~~~i 171 (724)
T 3rce_A 101 SIILYMSTFFASLIVVPIILIAREYKLT---------TYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFI 171 (724)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHTTCH---------HHHHHHHHHHTTSHHHHHTSSTTCCSGGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCc---------hHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Confidence 5666666666555555566666665321 2247778888999997777766 8899988887766666543
Q ss_pred h----chhhHHHHHHHHH
Q psy10437 313 Q----SKYQLSAAMGFFA 326 (619)
Q Consensus 313 ~----~~~~lsal~g~~a 326 (619)
+ ++...+++.|++.
T Consensus 172 ~alk~~~~~~~~lagl~~ 189 (724)
T 3rce_A 172 RLTINKDIFTLLLSPIFI 189 (724)
T ss_dssp HHHHHCCTHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 3 3334444444443
No 4
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=7.74 E-value=3e+02 Score=22.67 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=21.9
Q ss_pred CCceeeEEEEECCCcceEEE-EEEEEeecCCCCeEEE
Q psy10437 65 SKTTNVRLCLANDSGYYLDL-CLYNEITDPKTGVLSH 100 (619)
Q Consensus 65 g~~~p~RvvisN~SGy~l~v-~iY~Ev~d~~t~~v~~ 100 (619)
|+.+-+|+++.|..+.-..- .++.|+.||+|..+.+
T Consensus 16 GetV~~~~~~~~~~~~p~~~~~~~v~l~dp~g~~v~~ 52 (102)
T 2p9r_A 16 GQTVKFRVVSMDENFHPLNELIPLVYIQDPKGNRIAQ 52 (102)
T ss_dssp TCEEEEEEEEECGGGCBCCCEEEEEEEECTTSCEEEE
T ss_pred CCEEEEEEEEECCCCcCCCCCceEEEEECCCCCEEEE
Confidence 55667777776665443321 2467778888766653
No 5
>4g59_C M152 protein, retinoic acid early-inducible protein 1-gamma; MHC-I fold, immunoevasion, stress induced ligand, immune SYS; HET: NAG; 2.44A {Murid herpesvirus 1}
Probab=7.46 E-value=2.4e+02 Score=29.29 Aligned_cols=50 Identities=18% Similarity=0.436 Sum_probs=23.7
Q ss_pred eeEEEEEeecCCCCCceeeEEEEECCCcceEEEEEEEEeecCCCCeEEEeecc
Q psy10437 52 QAELRMTIRPTPSSKTTNVRLCLANDSGYYLDLCLYNEITDPKTGVLSHVVRA 104 (619)
Q Consensus 52 q~EIRi~i~~~~~g~~~p~RvvisN~SGy~l~v~iY~Ev~d~~t~~v~~si~~ 104 (619)
.+|--+.+|+-. | ..-+-++|++|||+.-++ -|-|....+-|.+..|+.|
T Consensus 232 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 281 (321)
T 4g59_C 232 KVEAWLDLRDLN-G-STDFAFVISSPTGWYATV-KYSEYPQQSPGMLLSSIDG 281 (321)
T ss_dssp EEEEEEETTSST-T-CCCCCEEEECTTSEEEEE-EECC---------------
T ss_pred EEEEeeehhhcC-C-CcceEEEEcCCCceeEEE-eeccCcccCCceEeecccc
Confidence 345445555433 2 336678999999999888 4888777667788888876
No 6
>2i8b_A Minor nucleoprotein VP30; VP30 ebola virus protein, transcription, RNA binding, viral; HET: MSE; 2.00A {Zaire ebolavirus}
Probab=6.99 E-value=2.9e+02 Score=25.27 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=25.9
Q ss_pred hhccchhHHHHHHHHHHHHhhc------hhhHHHHHHHHHhhhhchhhh
Q psy10437 293 LYYTDALSTSMVLLMYALNLQS------KYQLSAAMGFFAVMVRQTNII 335 (619)
Q Consensus 293 LyYTDv~St~~VL~~y~~~l~~------~~~lsal~g~~av~~RQTNIv 335 (619)
||+.|+..+...+-.....-++ -.-+-|++.++|++.|.+|=-
T Consensus 16 ~~~~~~lTL~~L~~~ae~w~~~di~~idds~LRAlLtL~av~~RKfskS 64 (152)
T 2i8b_A 16 LYFQGAITLLTLIKTAEHWARQDIRTIEDSKLRALLTLCAVMTRKFSKS 64 (152)
T ss_dssp ----CCEEHHHHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHSCHH
T ss_pred cccccchhHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHH
Confidence 7888887665554433332222 137889999999999999953
No 7
>2kaa_A Hirsutellin A, HTA; ribotoxin, RIP, alpha-sarcin; NMR {Hirsutella thompsonii}
Probab=6.50 E-value=2.5e+02 Score=25.65 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.5
Q ss_pred CCCceeeEEEEECCCcc
Q psy10437 64 SSKTTNVRLCLANDSGY 80 (619)
Q Consensus 64 ~g~~~p~RvvisN~SGy 80 (619)
.|.|.|.|||.++..|-
T Consensus 88 ~gsPGpdRVV~~~~~g~ 104 (130)
T 2kaa_A 88 KGGPTPIRVVYANSRGA 104 (130)
T ss_dssp CSCCCCCEEEEECTTTC
T ss_pred CCCCCCeEEEEecCCCc
Confidence 45799999999998875
No 8
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=5.72 E-value=57 Score=27.90 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHhhHH
Q psy10437 28 NAIEESVTNMVMRYGPRLW 46 (619)
Q Consensus 28 ~~le~~v~~~v~ryG~RLw 46 (619)
-.+|..+.++++.||....
T Consensus 15 vtLE~ilt~Lv~~YGW~~L 33 (88)
T 2jvw_A 15 ITLQKLLTELVEHYGWEEL 33 (88)
T ss_dssp CCHHHHHHHHHHHTCHHHH
T ss_pred hhHHHHHHHHHHHhCHHHH
Confidence 5699999999999998654
No 9
>3dd7_B PHD, prevent HOST death protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1}
Probab=5.71 E-value=3.5e+02 Score=17.78 Aligned_cols=19 Identities=0% Similarity=0.087 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhHHhh
Q psy10437 30 IEESVTNMVMRYGPRLWKL 48 (619)
Q Consensus 30 le~~v~~~v~ryG~RLwrL 48 (619)
+++.++.+..+||.-+|.|
T Consensus 2 lDaEFaaIm~~hg~t~~~L 20 (23)
T 3dd7_B 2 LDAEFASLFDTLDSTNKEM 20 (26)
T ss_pred chhHHHHHHHHHhHHHHHH
Confidence 4567888999999999877
No 10
>2k4v_A Uncharacterized protein PA1076; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa}
Probab=5.43 E-value=5.6e+02 Score=23.23 Aligned_cols=19 Identities=11% Similarity=0.356 Sum_probs=12.7
Q ss_pred ceEEEEEEEEe-ecCCCCeE
Q psy10437 80 YYLDLCLYNEI-TDPKTGVL 98 (619)
Q Consensus 80 y~l~v~iY~Ev-~d~~t~~v 98 (619)
..-++++|+|| +||+-|.-
T Consensus 21 ~~y~l~l~YeV~~dp~eG~~ 40 (125)
T 2k4v_A 21 QDINIHIRYEVRQNAESGAY 40 (125)
T ss_dssp SCCEEEEEEEEEEETTTEEE
T ss_pred CCeeEEEEEEeecCCCCCce
Confidence 44567788998 66765543
Done!