RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10437
         (619 letters)



>gnl|CDD|218329 pfam04922, DIE2_ALG10, DIE2/ALG10 family.  The ALG10 protein from
           Saccharomyces cerevisiae encodes the alpha-1,2
           glucosyltransferase of the endoplasmic reticulum. This
           protein has been characterized in rat as potassium
           channel regulator 1.
          Length = 380

 Score =  247 bits (632), Expect = 3e-76
 Identities = 149/431 (34%), Positives = 208/431 (48%), Gaps = 63/431 (14%)

Query: 135 PNPYIDEQFHIPQAAKFCKGNFFESGNYAANRERAARPYFFIFYKFGHAFSTSLAMPRDE 194
           P PY+DE FHIPQA ++C GNF                                      
Sbjct: 5   PEPYMDEIFHIPQAQRYCSGNF-------------------------------------- 26

Query: 195 LVGFQSKWDHKITTLPGLYLFSIGIFKPIGLLLKYDICTVNILRSTNLICAIFNF-YLIY 253
                S+WD  ITT PGLYL S+   KP           ++ILR  N +C +     LI 
Sbjct: 27  -----SQWDPMITTPPGLYLLSLACLKPGNEFYGNS--ILSILRLINALCGVIFLPVLIP 79

Query: 254 EILKVKNISKDGIDQMSLFKILLSALNISTFPVLYFFSFLYYTDALSTSMVLLMYALNLQ 313
            I+ + N +    D      + L+AL +S+ P+L+FFSFLYYTD  S + VL  Y   L 
Sbjct: 80  RIIILLNNTDSQQD------VTLTALTLSSLPLLWFFSFLYYTDVGSLTFVLWGYLTCLF 133

Query: 314 SKYQLSAAMGFFAVMVRQTNIIWVFYIATEIVLSDLEVFFEK-MSKKNAFSKGSYLKVSQ 372
              + SA +G  + + RQTNIIW  +IA  I+   L V     + K+   +  S L+  +
Sbjct: 134 GNPKASAFLGLVSCLFRQTNIIWAAFIAFSILAFTLSVERPAVLQKRFDETLRSKLEFLK 193

Query: 373 AMIKQLISRGTHKKVIGFAMVMFLFVLFIMLNQGIVVGDRSSHKPVVHVPQMFYFATFCL 432
             I  L        V+ +  +   F +FI+ N GIV+GD+S+H+  +H  Q+FYF  FC 
Sbjct: 194 LFIHSL--TDFSNLVLPYITLFVAFFIFILWNGGIVLGDKSAHQASLHFAQIFYFFAFCA 251

Query: 433 FFSLP-YALRSLESFSKLLFSIDRS-FILLLWAVAFYYIIQHNTLVHPFTLADNRHYTFY 490
           FFS P     +L S  + L +        L+ AV    ++ + T VHPF LADNRHYTFY
Sbjct: 252 FFSFPIQISPNLLSHLRHLLTRKPVQKSFLILAVVA--LVAYFTYVHPFLLADNRHYTFY 309

Query: 491 IWKRLYENIPYFRYLMIPVYVFSFYH----LMRNCTFKYFFLFTTCVFLNLVPQLLLELR 546
           +W+RL  N P  +Y ++P YVFS               +  LF     L LVP  L E R
Sbjct: 310 LWRRLIANHPIMKYTLVPAYVFSLRFFLTSTPSPTHIFWKLLFFIATLLVLVPAPLFEFR 369

Query: 547 YFIMPFILYRL 557
           Y+I+P++L+RL
Sbjct: 370 YYILPYVLWRL 380


>gnl|CDD|219797 pfam08326, ACC_central, Acetyl-CoA carboxylase, central region.
           The region featured in this family is found in various
           eukaryotic acetyl-CoA carboxylases, N-terminal to the
           catalytic domain (pfam01039). This enzyme (EC:6.4.1.2)
           is involved in the synthesis of long-chain fatty acids,
           as it catalyzes the rate-limiting step in this process.
          Length = 707

 Score = 77.0 bits (190), Expect = 1e-14
 Identities = 28/81 (34%), Positives = 49/81 (60%)

Query: 30  IEESVTNMVMRYGPRLWKLRVLQAELRMTIRPTPSSKTTNVRLCLANDSGYYLDLCLYNE 89
           +EE++   + R+G RLW+LRV QAE+R+ +R   +     +R+ + N SGY + + LY E
Sbjct: 627 VEEALAGFLERFGRRLWRLRVTQAEVRIRLRDPSTGAPVPLRVIITNVSGYVVKVELYRE 686

Query: 90  ITDPKTGVLSHVVRAHLSFVH 110
           + DPK  ++ H + +    +H
Sbjct: 687 VKDPKGKLIFHSIGSKQGSLH 707


>gnl|CDD|176962 CHL00019, atpF, ATP synthase CF0 B subunit.
          Length = 184

 Score = 29.4 bits (67), Expect = 3.2
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 9/43 (20%)

Query: 559 FNINSLKWWELALEFSFNS------LINI---VTIYIFFTKKF 592
            +  SL  W  A  F FN+      LIN+   + + I+F K  
Sbjct: 6   DSFVSLGHWPSAGSFGFNTDILETNLINLSVVLGVLIYFGKGV 48


>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
          Length = 659

 Score = 30.3 bits (68), Expect = 3.5
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 338 FYIATEIVLSDLEVFFEKMSKKNAFSKGSYLKV--SQAMIKQLISRGTHKKVIGFAMV 393
           FY A   VL +  + F   SK N+++KG Y  V  ++ M+K +  + T K+++G  +V
Sbjct: 552 FYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDT-KEILGMFIV 608


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.330    0.142    0.444 

Gapped
Lambda     K      H
   0.267   0.0736    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,174,824
Number of extensions: 3264258
Number of successful extensions: 4148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4084
Number of HSP's successfully gapped: 153
Length of query: 619
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 516
Effective length of database: 6,369,140
Effective search space: 3286476240
Effective search space used: 3286476240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 62 (27.6 bits)