RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10437
(619 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 6e-06
Identities = 80/571 (14%), Positives = 163/571 (28%), Gaps = 163/571 (28%)
Query: 126 KYDYSSGNAPNPYIDEQFHIPQAAKFCKGNFFESGNYAANRERAARPYFFIFYKFGHAFS 185
+ +Y ++ + + Y R+R Y F+
Sbjct: 88 RINY-------KFLMSPIK-----TEQRQPSMMTRMYIEQRDR--------LYNDNQVFA 127
Query: 186 TSLAMPRDELV-----GFQSKWDHKITTLPGLYLFSIGIFKPIGLLLKYDICTVNILRST 240
+ R + K + G+ +G K + +++ S
Sbjct: 128 -KYNVSRLQPYLKLRQALLELRPAKNVLIDGV----LGSGKTW---V-----ALDVCLSY 174
Query: 241 NLICAIFNFYLIYEILKVKNISKDG--IDQMS--LFKILLSALNISTFPVLYFFSFLYYT 296
+ C +F + + L +KN + ++ + L++I + + S
Sbjct: 175 KVQCK-MDFKIFW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 297 DALSTSMVLLMY--AL----NLQSKYQLSAAMGFFA----VMV--RQTNII--WVFYIAT 342
L + Y L N+Q+ +A F +++ R + T
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNA----FNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 343 EIVLSDLEVFFEKMSKKNAFSKGSYLKVSQAMIKQLISRGTHKKVIGFAMVMFLFVLFIM 402
I L + K+ K YL + + + + +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPREV-----LTTNPRRLSIIA----ES 336
Query: 403 LNQGIVVGDRSSH---KPVVHVPQMFYFATFCLFFSL-PYALRSLESFSKL-LFS----I 453
+ G+ D H + + + L P R + F +L +F I
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNV-------LEPAEYRKM--FDRLSVFPPSAHI 387
Query: 454 DRSFILLLWAVAFYYIIQH--NTLVHPFTLA--DNRHYTFYI------WKRLYENIPYFR 503
+ L+W + N L H ++L + T I K EN
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKL-HKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 504 YLMIPVY----VFSFYHLMRNCTFKYFF-----------------LFTTCVFLNL----- 537
++ Y F L+ +YF+ LF VFL+
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM-VFLDFRFLEQ 505
Query: 538 --------------VPQLLLELRYFIMPFILYRLHFNINSLKWWELA---LEFSFN---S 577
+ L +L++ Y+ + N K+ L L+F +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKF-------YKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 578 LI-----NIVTIYIFFTKKFYWEDSA-DIQR 602
LI +++ I + + +E++ +QR
Sbjct: 559 LICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 37.1 bits (85), Expect = 0.019
Identities = 69/443 (15%), Positives = 136/443 (30%), Gaps = 114/443 (25%)
Query: 13 NGDMHWNKKYDYSSGNAIEESVTNMVMRYGPRLW---------KLRV--LQAELRMTIRP 61
+ + W + +S + E + ++ + P KLR+ +QAELR ++
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK- 239
Query: 62 TPSSKTTNVRLCLAN--DSGY--YLDL-C--L----YNEITDPKTGVLSHVVRAHLSFVH 110
S N L L N ++ +L C L + ++TD LS H+S H
Sbjct: 240 --SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD----FLSAATTTHISLDH 293
Query: 111 -NHGLKITNGDVHWNKKYDYSSGNAPNPYIDEQFHIPQAAKFCKGNFFESGNYAAN-RER 168
+ L K D + P + N A + R+
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLP----------REV---LTTNPRRLSIIAESIRDG 340
Query: 169 AARPYFFIFY---KFGHAFSTSLAMPRDELVGFQSKWDHKITTLPGLYLFSIGIFK---- 221
A + K +SL +++ ++ + +F
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLN--------VLEPAEYR-----KMF-DRLSVFPPSAH 386
Query: 222 -PIGLL------LKYDIC--TVNILRSTNLIC-----AIFNFYLIYEILKVKNISKDGID 267
P LL + VN L +L+ + + IY LKVK +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE-----N 441
Query: 268 QMSLFKILLSALNI------STFPVL----YFFSFLYY--TDALSTSMVLLM---YALNL 312
+ +L + ++ NI YF+S + + + + L + L+
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-LDF 500
Query: 313 QSKYQLSAAMGFFAVMVRQTNIIWVFYIATEIVLSDLEVFFEKMSKK-NAFSK--GSYLK 369
F +R + W + L L+ + + + + + L
Sbjct: 501 ----------RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 370 VSQAMIKQLISRGTHKKVIGFAM 392
+ + LI + ++ A+
Sbjct: 551 FLPKIEENLI-CSKYTDLLRIAL 572
Score = 32.5 bits (73), Expect = 0.48
Identities = 23/138 (16%), Positives = 41/138 (29%), Gaps = 31/138 (22%)
Query: 1 MQNELKIHFKITNGDMHWNKKYDYSSGNAIEESVTNMVMRY-G---------------PR 44
++NE +H I + H+N + S + I + + G
Sbjct: 439 LENEYALHRSIVD---HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 45 LW-KLRVLQAELRMTIRPTPSSKTTNVRLCLANDSGYYLDLCLYNE-ITDPKTGVLSHVV 102
++ R L+ ++R S N + N L Y I D +V
Sbjct: 496 VFLDFRFLEQKIRHD------STAWNASGSILNT---LQQLKFYKPYICD-NDPKYERLV 545
Query: 103 RAHLSFVHNHGLKITNGD 120
A L F+ +
Sbjct: 546 NAILDFLPKIEENLICSK 563
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 0.001
Identities = 94/670 (14%), Positives = 172/670 (25%), Gaps = 294/670 (43%)
Query: 25 SSGNAIEESV---TNMVMRYGPRLWKLRVLQAELRMTIRPTPSSK-------TTNVRLCL 74
S G+ +E + T LQ + + P P+ TT L
Sbjct: 12 SHGS-LEHVLLVPTASFFIA-------SQLQEQFNKIL-PEPTEGFAADDEPTTPAELV- 61
Query: 75 ANDSGYYLDLCLYNEITDPKTGVLSHVVRAHLSFVHNHGLKITNGDVHWNKKYDYSSGNA 134
G +L + + K G V+ L+ N L+ D+H + A
Sbjct: 62 ----GKFLGYVS-SLVEPSKVGQFDQVLNLCLTEFENCYLE--GNDIH--------ALAA 106
Query: 135 PNPYIDEQFHIPQAAKFCKGNFFESGNYAANR--ERAARPYFF---------IFYKFG-- 181
++ + + + K N+ + A R ++ + F + FG
Sbjct: 107 KLLQENDT-TLVKTKELIK-NYITA-RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 182 -----------HAFSTSLAMPRD----------ELV------------GFQ-SKW-DHKI 206
+ T + D EL+ G +W ++
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 207 TTLPGLYLFSIGI-FKPIGL--LLKYDI-CTV---------NILRST-----NLICAIF- 247
T YL SI I IG+ L Y + + + L+ L+ A+
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 248 -------NFY-LIYEILKVKNISKDGIDQMSLFKILLSALNISTFPVLYFFSFLYYTDAL 299
+F+ + + + V LF I + +P D+L
Sbjct: 284 AETDSWESFFVSVRKAITV------------LFFIGVRCYE--AYPNTSL-PPSILEDSL 328
Query: 300 S------TSMVLLMYALNLQ--SKYQLSAAMGFFAVMVRQTN--------IIWVFYIA-- 341
+ M L++ ++ Q+ V +TN + I+
Sbjct: 329 ENNEGVPSPM------LSISNLTQEQVQD-------YVNKTNSHLPAGKQV----EISLV 371
Query: 342 ---TEIVLS----DLEVFFEKMSKKNAFSKGSYLKVSQAMIKQLISRGTHKKVIGFAMVM 394
+V+S L + K A S + Q+ I + +K+ F+
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPSG-----LDQSRIP-----FSERKLK-FSNR- 419
Query: 395 FLFVLFIMLNQGIVVGDRSSHKPVVHVPQMFYFATFCLFFSLPYALRSLESFSKLLFSID 454
FL PV P F S L S L+ D
Sbjct: 420 FL--------------------PVA-SP----------FHS-HL----LVPASDLINK-D 442
Query: 455 RSFILLLWAVAFYYIIQHNTLVHPFTLADNRHYTFYIWKRLYENIPYFRYLMIPVYVFSF 514
+ + + IPV
Sbjct: 443 LVKNNVSFNAK--------------------------------------DIQIPV----- 459
Query: 515 YHL-----MRNCTFKYFFLFTTCVFLNLVPQLLLELRYFIMPFILYRLHFNINSLKWWEL 569
Y +R + + +V + +P + WE
Sbjct: 460 YDTFDGSDLRV--------LSGSISERIVDCI------IRLP-----VK--------WET 492
Query: 570 ALEFSFNSLI 579
+F ++
Sbjct: 493 TTQFKATHIL 502
Score = 30.0 bits (67), Expect = 2.8
Identities = 48/298 (16%), Positives = 81/298 (27%), Gaps = 119/298 (39%)
Query: 14 GDMHWNKKYDYSSGNAIEESVTN-----MVMRYGPRLWKLRVLQAELRMTIRPTPSSKTT 68
D H+ Y +S I + V N + G + ++R + M K
Sbjct: 1649 ADNHFKDTYGFS----ILDIVINNPVNLTIHFGGEKGKRIR--ENYSAMIFETIVDGKLK 1702
Query: 69 NVRLCLANDSGYYLDLCLYNEITDPKTGVLSHVVRAHLSFVHNHG-LKITNGDVHWNKKY 127
++ + EI + T +F G L T
Sbjct: 1703 TEKI--------------FKEINEHSTS---------YTFRSEKGLLSATQ--------- 1730
Query: 128 DYSSGN----------APNPYIDEQFHIPQAAKFCKGNFFES-GNYAA--------NRER 168
A + + IP A F G+ S G YAA + E
Sbjct: 1731 -----FTQPALTLMEKAAFEDLKSKGLIPADATFA-GH---SLGEYAALASLADVMSIES 1781
Query: 169 AARPYFFIFYKFGHAFSTSLAMPRDELVGFQSKWDHKITTLPGLYLFSIGIFKP--IGLL 226
+FY+ G A+PRDEL G + + P +
Sbjct: 1782 LVE---VVFYR-GMTMQV--AVPRDEL---------------GRSNYGMIAINPGRVAAS 1820
Query: 227 LKYD----ICTVNILRSTNLICAIFNF------YLI----------YEIL---KVKNI 261
+ + + + T + I N+ Y+ +L K++ I
Sbjct: 1821 FSQEALQYVVE-RVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 2.3
Identities = 12/58 (20%), Positives = 16/58 (27%), Gaps = 34/58 (58%)
Query: 562 NSLKWWELALEFSFNSLINIVTIYIFFTKKFYWEDSADIQRIMCNKYVAP---INKYV 616
+LK L+ SL K Y +DS AP I +
Sbjct: 20 QALK----KLQ---ASL------------KLYADDS------------APALAIKATM 46
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering,
endoplasmic reticulum, ER-golgi transport, membrane,
phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Length = 706
Score = 29.1 bits (64), Expect = 5.7
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 223 IGLLLKYDICTVNILRSTNLICAIFNFYLIYEILKVKNISKDGIDQMSL-FKILLSALNI 281
I L DI L+ N + + Y ILK+ +++G++Q FK L S L++
Sbjct: 576 INKLDSMDIPLAISLKVKNELLNVIVNYFTESILKLNKFNQNGLNQFLHDFKSLSSILSL 635
Query: 282 STFPVLYFFSFL 293
+ Y L
Sbjct: 636 PSHATNYKCMSL 647
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.142 0.444
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,528,166
Number of extensions: 568986
Number of successful extensions: 1089
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1078
Number of HSP's successfully gapped: 20
Length of query: 619
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 520
Effective length of database: 3,937,614
Effective search space: 2047559280
Effective search space used: 2047559280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (26.9 bits)