BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10439
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From
Human 2-Oxoacid Dehydrogenase
Length = 98
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 71/83 (85%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
+I MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ + ++GILAKI+V E
Sbjct: 9 KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEE 68
Query: 105 NTTDVKVGTLIAVMVEEGEDWQN 127
+ ++++G+LI ++VEEGEDW++
Sbjct: 69 GSKNIRLGSLIGLIVEEGEDWKH 91
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 47/56 (83%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
I MPSLSPTM EG IVKWLKKEG+AV GD LCEI+TDKAV++ + ++GILAKI+
Sbjct: 10 ILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIV 65
>pdb|1ZY8|K Chain K, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|L Chain L, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|M Chain M, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|N Chain N, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|O Chain O, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 229
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 71/83 (85%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
+I MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ + ++GILAKI+V E
Sbjct: 5 KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEE 64
Query: 105 NTTDVKVGTLIAVMVEEGEDWQN 127
+ ++++G+LI ++VEEGEDW++
Sbjct: 65 GSKNIRLGSLIGLIVEEGEDWKH 87
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 47/56 (83%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
I MPSLSPTM EG IVKWLKKEG+AV GD LCEI+TDKAV++ + ++GILAKI+
Sbjct: 6 ILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIV 61
>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|B Chain B, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|C Chain C, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|G Chain G, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 128
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 61/82 (74%)
Query: 43 QQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 102
++ +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +EEG LAKILV
Sbjct: 27 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILV 86
Query: 103 PENTTDVKVGTLIAVMVEEGED 124
PE T DV +GT + ++VE+ D
Sbjct: 87 PEGTRDVPLGTPLCIIVEKEAD 108
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 166 MPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+P+LSPTMT GT+ +W KK G+ + GD+L EI+TDKA + FE +EEG LAKIL
Sbjct: 32 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKIL 85
>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase
(Pdh) Complex, Nmr, 1 Structure
Length = 106
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 61/82 (74%)
Query: 43 QQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 102
++ +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +EEG LAKILV
Sbjct: 9 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILV 68
Query: 103 PENTTDVKVGTLIAVMVEEGED 124
PE T DV +GT + ++VE+ D
Sbjct: 69 PEGTRDVPLGTPLCIIVEKEAD 90
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 166 MPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+P+LSPTMT GT+ +W KK G+ + GD+L EI+TDKA + FE +EEG LAKIL
Sbjct: 14 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKIL 67
>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of
Human 2-Oxoacid Dehydrogenase
Length = 108
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 58/81 (71%)
Query: 44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
Q++ +PSLSPTM GTI +W KKEGD + GD++ E++TDKA + FE+ EE +AKILV
Sbjct: 8 QKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVA 67
Query: 104 ENTTDVKVGTLIAVMVEEGED 124
E T DV +G +I + V + ED
Sbjct: 68 EGTRDVPIGAIICITVGKPED 88
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
Q + +PSLSPTM GTI +W KKEGD + GD++ E++TDKA + FE+ EE +AKIL
Sbjct: 8 QKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKIL 65
>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex
Length = 87
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 60/82 (73%)
Query: 43 QQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 102
++ +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TD A + FE +EEG LAKILV
Sbjct: 5 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILV 64
Query: 103 PENTTDVKVGTLIAVMVEEGED 124
PE T DV +GT + ++VE+ D
Sbjct: 65 PEGTRDVPLGTPLCIIVEKEAD 86
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 41/54 (75%)
Query: 166 MPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+P+LSPTMT GT+ +W KK G+ + GD+L EI+TD A + FE +EEG LAKIL
Sbjct: 10 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKIL 63
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 42/71 (59%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
E K+P + + EG IVKW K GD V DVLCE+Q DKAV+ + +G + +ILVPE
Sbjct: 4 EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 63
Query: 105 NTTDVKVGTLI 115
T TLI
Sbjct: 64 GTVATVGQTLI 74
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+P + + EG IVKW K GD V DVLCE+Q DKAV+ + +G + +IL
Sbjct: 5 FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 60
>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
pdb|1LAC|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
Length = 80
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 42/71 (59%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
E K+P + + EG IVKW K GD V DVLCE+Q DKAV+ + +G + +ILVPE
Sbjct: 3 EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 62
Query: 105 NTTDVKVGTLI 115
T TLI
Sbjct: 63 GTVATVGQTLI 73
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+P + + EG IVKW K GD V DVLCE+Q DKAV+ + +G + +IL
Sbjct: 4 FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 59
>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase
Component Of The 2-Oxoglutarate Dehydrogenase
Multienzyme Complex Of Escherichia Coli, Nmr, 25
Structures
Length = 80
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
+I +P L ++ + T+ W KK GDAV +VL EI+TDK V+ +GIL +L E
Sbjct: 4 DILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDE 63
Query: 105 NTT 107
TT
Sbjct: 64 GTT 66
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
I +P L ++ + T+ W KK GDAVV +VL EI+TDK V+ +GIL +L
Sbjct: 5 ILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVL 60
>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, Minimized Average Structure
pdb|1GHK|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, 25 Structures
Length = 79
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
+IK P+ ++ +GT+ W KK G+AV +++ +I+TDK VM E +G++A+I+ E
Sbjct: 3 DIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE 62
Query: 105 NTTDVKVGTLIAVMVEEG 122
T V G L+ + E G
Sbjct: 63 GDT-VLSGELLGKLTEGG 79
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
I P+ ++ +GT+ W KK G+AV +++ +I+TDK VM E +G++A+I+
Sbjct: 4 IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIV 59
>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
pdb|1K8M|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
Length = 93
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 101
+ K+ + + E T+ +W KEGD V+ D +CE+Q+DKA ++ + +G++ K+
Sbjct: 6 QFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLY 62
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+ + + E T+ +W KEGD V D +CE+Q+DKA ++ + +G++ K+
Sbjct: 7 FKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLY 62
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From
Thermoplasma Acidophilum
Length = 77
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
E K+P + +TEG IV+W KEGD V L E+ TDK + + G + KIL E
Sbjct: 3 EFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYRE 62
Query: 105 NTTDVKVGT 113
V VG+
Sbjct: 63 GQV-VPVGS 70
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 165 NMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+P + +TEG IV+W KEGD V L E+ TDK + + G + KIL
Sbjct: 5 KLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKIL 59
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 32.0 bits (71), Expect = 0.27, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 102
G I + G AV GDVL I+ K + E++G +A++LV
Sbjct: 1104 GVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLV 1148
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 32.0 bits (71), Expect = 0.27, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 102
G I + G AV GDVL I+ K + E++G +A++LV
Sbjct: 1104 GVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLV 1148
>pdb|3VR8|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 645
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 165 NMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLC 196
NM + PT + ++K+ K+ GD +VPG C
Sbjct: 389 NMGGI-PTNYKAQVIKYTKEGGDKIVPGLYAC 419
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 27.7 bits (60), Expect = 5.5, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKI 100
G IVK + G V G LC I+ K E++G++AKI
Sbjct: 621 GLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKI 663
Score = 26.9 bits (58), Expect = 8.1, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218
G IVK + G V G LC I+ K E++G++AKI
Sbjct: 621 GLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKI 663
>pdb|3LEC|A Chain A, The Crystal Structure Of A Protein In The Nadb-Rossmann
Superfamily From Streptococcus Agalactiae To 1.8a
Length = 230
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 18/97 (18%)
Query: 37 TNILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGI 96
N +D Q +K L P E + KWL + D+L E ++ + +
Sbjct: 109 NNDIDKLQHVKTLVLQPNNREDDLRKWLAANDFEIVAEDILTENDKRYEILVVKHGHXNL 168
Query: 97 LAK------ILVPENTTDVKVGTLIAVMVEEGEDWQN 127
AK L+ NTT K E WQN
Sbjct: 169 TAKELRFGPFLLSNNTTVFK------------EKWQN 193
>pdb|2K32|A Chain A, Truncated Acra From Campylobacter Jejuni For Glycosylation
Studies
pdb|2K33|A Chain A, Solution Structure Of An N-Glycosylated Protein Using In
Vitro Glycosylation
Length = 116
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTL 114
G IV L K GD V G L I+ D+A F + + ++ + + D + TL
Sbjct: 10 GVIVNKLFKAGDKVKKGQTLFIIEQDQASKDF-NRSKALFSQSAISQKEYDSSLATL 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,339,465
Number of Sequences: 62578
Number of extensions: 176800
Number of successful extensions: 411
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 60
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)