Query psy10439
Match_columns 219
No_of_seqs 277 out of 2255
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 18:11:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02927 SucB_Actino 2-oxoglu 100.0 6.4E-30 1.4E-34 240.7 20.7 177 42-219 1-193 (590)
2 PRK11855 dihydrolipoamide acet 100.0 1.8E-28 4E-33 229.6 20.2 175 42-219 1-176 (547)
3 TIGR01348 PDHac_trf_long pyruv 100.0 9.8E-28 2.1E-32 224.3 19.8 171 44-219 1-173 (546)
4 PRK11854 aceF pyruvate dehydro 99.9 1.5E-26 3.2E-31 219.8 20.0 161 42-219 1-161 (633)
5 PRK11854 aceF pyruvate dehydro 99.9 1.7E-26 3.6E-31 219.5 18.6 160 41-219 103-262 (633)
6 KOG0557|consensus 99.9 8.9E-24 1.9E-28 188.8 11.4 102 32-133 26-128 (470)
7 COG0508 AceF Pyruvate/2-oxoglu 99.9 6.9E-22 1.5E-26 178.9 12.7 82 42-124 1-82 (404)
8 PTZ00144 dihydrolipoamide succ 99.8 3.3E-20 7.2E-25 167.8 12.9 109 12-122 14-122 (418)
9 PLN02226 2-oxoglutarate dehydr 99.8 3.3E-19 7.1E-24 162.7 13.1 80 40-121 89-168 (463)
10 PF00364 Biotin_lipoyl: Biotin 99.8 1.7E-19 3.8E-24 126.3 7.7 74 44-118 1-74 (74)
11 PLN02744 dihydrolipoyllysine-r 99.8 3.7E-18 8E-23 158.6 13.5 93 29-122 98-191 (539)
12 PRK14875 acetoin dehydrogenase 99.8 6.2E-18 1.3E-22 149.6 11.5 80 42-122 1-80 (371)
13 PRK05704 dihydrolipoamide succ 99.8 1.3E-17 2.9E-22 151.1 13.8 81 42-123 1-81 (407)
14 TIGR01347 sucB 2-oxoglutarate 99.7 5.4E-17 1.2E-21 146.9 13.3 78 44-122 1-78 (403)
15 KOG0559|consensus 99.7 2.3E-17 4.9E-22 143.5 8.0 78 43-121 72-149 (457)
16 PRK06748 hypothetical protein; 99.7 9.8E-17 2.1E-21 114.2 9.8 63 57-120 12-75 (83)
17 TIGR02927 SucB_Actino 2-oxoglu 99.7 1.6E-16 3.6E-21 150.1 13.1 82 41-123 133-214 (590)
18 PRK11892 pyruvate dehydrogenas 99.7 5.3E-16 1.2E-20 142.6 14.3 84 42-126 1-85 (464)
19 TIGR01348 PDHac_trf_long pyruv 99.7 7.4E-16 1.6E-20 144.5 13.1 78 43-122 116-193 (546)
20 PRK11856 branched-chain alpha- 99.6 4.1E-15 8.8E-20 135.3 14.2 81 42-123 1-81 (411)
21 PRK05889 putative acetyl-CoA c 99.6 2.3E-15 4.9E-20 104.5 9.4 61 57-118 10-70 (71)
22 PLN02528 2-oxoisovalerate dehy 99.6 4.9E-15 1.1E-19 134.9 12.6 76 46-122 1-76 (416)
23 PRK11855 dihydrolipoamide acet 99.6 4.9E-15 1.1E-19 139.3 12.9 79 42-122 118-196 (547)
24 cd06663 Biotinyl_lipoyl_domain 99.6 1.3E-14 2.8E-19 100.8 9.8 72 46-118 2-73 (73)
25 COG0511 AccB Biotin carboxyl c 99.6 5.9E-15 1.3E-19 115.6 8.2 62 57-119 78-139 (140)
26 TIGR01349 PDHac_trf_mito pyruv 99.6 3.2E-14 6.8E-19 130.2 13.0 77 46-122 2-78 (435)
27 PRK08225 acetyl-CoA carboxylas 99.6 3.4E-14 7.4E-19 98.2 9.2 62 57-119 9-70 (70)
28 PF00364 Biotin_lipoyl: Biotin 99.5 3.4E-14 7.4E-19 99.4 5.7 57 163-219 2-58 (74)
29 COG0508 AceF Pyruvate/2-oxoglu 99.5 4.8E-14 1E-18 127.9 6.7 58 162-219 3-60 (404)
30 KOG0558|consensus 99.5 4.3E-14 9.3E-19 122.8 6.0 85 37-122 58-142 (474)
31 PRK06549 acetyl-CoA carboxylas 99.5 3.2E-13 6.9E-18 104.1 9.4 62 56-118 68-129 (130)
32 COG0511 AccB Biotin carboxyl c 99.4 6.8E-13 1.5E-17 103.9 9.3 54 160-219 69-122 (140)
33 PRK05641 putative acetyl-CoA c 99.4 7.4E-13 1.6E-17 105.0 9.0 62 56-118 91-152 (153)
34 PRK07051 hypothetical protein; 99.4 1.8E-12 3.9E-17 92.0 9.7 70 43-119 3-79 (80)
35 KOG0557|consensus 99.4 4.4E-13 9.4E-18 120.6 6.0 61 159-219 36-96 (470)
36 cd06850 biotinyl_domain The bi 99.4 4E-12 8.7E-17 86.0 9.1 62 56-118 6-67 (67)
37 TIGR00531 BCCP acetyl-CoA carb 99.3 3.7E-12 8E-17 101.4 8.4 60 58-118 89-155 (156)
38 PLN02983 biotin carboxyl carri 99.3 4E-12 8.6E-17 107.6 8.5 62 57-119 205-273 (274)
39 PRK06549 acetyl-CoA carboxylas 99.3 2E-11 4.3E-16 94.2 11.3 54 160-219 60-113 (130)
40 PRK14875 acetoin dehydrogenase 99.3 3E-12 6.6E-17 113.2 7.3 58 162-219 3-60 (371)
41 PLN02226 2-oxoglutarate dehydr 99.3 3.3E-12 7.2E-17 116.9 7.1 58 162-219 92-149 (463)
42 cd06849 lipoyl_domain Lipoyl d 99.3 4.8E-11 1E-15 80.6 10.7 73 45-118 2-74 (74)
43 PRK06302 acetyl-CoA carboxylas 99.3 1.1E-11 2.4E-16 98.7 8.4 60 58-118 88-154 (155)
44 PTZ00144 dihydrolipoamide succ 99.3 5.3E-12 1.1E-16 114.6 7.2 59 161-219 44-102 (418)
45 PRK06748 hypothetical protein; 99.3 7E-12 1.5E-16 89.3 5.9 45 175-219 12-57 (83)
46 PRK14042 pyruvate carboxylase 99.2 2.4E-11 5.3E-16 114.7 9.6 62 57-119 533-594 (596)
47 PRK05641 putative acetyl-CoA c 99.2 3.9E-10 8.4E-15 89.4 13.3 53 161-219 84-136 (153)
48 PRK05704 dihydrolipoamide succ 99.2 2.4E-11 5.1E-16 110.5 7.1 57 163-219 4-60 (407)
49 TIGR00531 BCCP acetyl-CoA carb 99.1 3.5E-10 7.5E-15 90.1 10.0 59 161-219 80-139 (156)
50 PRK06302 acetyl-CoA carboxylas 99.1 1.2E-10 2.6E-15 92.7 7.4 59 161-219 79-138 (155)
51 TIGR02712 urea_carbox urea car 99.1 1.4E-10 3E-15 117.5 9.4 63 56-119 1139-1201(1201)
52 PLN02744 dihydrolipoyllysine-r 99.1 7.6E-11 1.6E-15 110.0 6.6 61 159-219 110-170 (539)
53 cd06663 Biotinyl_lipoyl_domain 99.1 2.2E-10 4.7E-15 79.4 7.0 55 164-218 2-56 (73)
54 PRK05889 putative acetyl-CoA c 99.1 1.4E-10 3.1E-15 80.3 6.0 44 175-218 10-53 (71)
55 PLN02983 biotin carboxyl carri 99.1 3.6E-10 7.8E-15 95.8 9.3 59 161-219 197-256 (274)
56 PRK14040 oxaloacetate decarbox 99.1 2.7E-10 5.9E-15 107.8 9.4 62 56-118 531-592 (593)
57 TIGR01108 oadA oxaloacetate de 99.1 2E-10 4.3E-15 108.6 7.8 59 56-115 524-582 (582)
58 TIGR01235 pyruv_carbox pyruvat 99.1 3.9E-10 8.6E-15 113.5 9.0 62 56-118 1081-1142(1143)
59 PRK09282 pyruvate carboxylase 99.0 9.7E-10 2.1E-14 104.2 9.2 63 56-119 529-591 (592)
60 COG4770 Acetyl/propionyl-CoA c 99.0 1.4E-09 3E-14 100.3 7.4 63 56-119 582-644 (645)
61 KOG0559|consensus 98.9 2.8E-10 6.1E-15 99.7 1.8 59 161-219 72-130 (457)
62 PRK12999 pyruvate carboxylase; 98.9 2.9E-09 6.3E-14 107.6 9.2 63 56-119 1083-1145(1146)
63 PRK11892 pyruvate dehydrogenas 98.9 2.7E-09 5.9E-14 98.5 6.4 57 163-219 4-60 (464)
64 PRK08225 acetyl-CoA carboxylas 98.9 4.1E-09 8.8E-14 72.7 5.6 44 175-218 9-52 (70)
65 PRK11856 branched-chain alpha- 98.9 6E-09 1.3E-13 95.0 7.4 57 163-219 4-60 (411)
66 COG1038 PycA Pyruvate carboxyl 98.8 7.2E-09 1.6E-13 98.8 6.9 62 57-119 1087-1148(1149)
67 PRK14042 pyruvate carboxylase 98.8 9.5E-08 2.1E-12 90.5 12.7 44 176-219 534-577 (596)
68 KOG0558|consensus 98.8 3.9E-09 8.4E-14 92.3 2.6 62 158-219 61-122 (474)
69 PRK07051 hypothetical protein; 98.7 3E-08 6.6E-13 70.2 4.9 57 162-218 4-61 (80)
70 TIGR01108 oadA oxaloacetate de 98.7 6.2E-08 1.3E-12 91.8 8.1 44 176-219 526-569 (582)
71 cd06850 biotinyl_domain The bi 98.6 1.2E-07 2.5E-12 63.8 6.1 45 174-218 6-50 (67)
72 TIGR01235 pyruv_carbox pyruvat 98.6 1.5E-07 3.3E-12 95.1 9.0 44 176-219 1083-1126(1143)
73 KOG0369|consensus 98.5 1.7E-07 3.7E-12 88.3 6.4 62 57-119 1114-1175(1176)
74 cd06848 GCS_H Glycine cleavage 98.5 2.9E-07 6.4E-12 67.4 5.5 64 43-107 15-79 (96)
75 PRK14040 oxaloacetate decarbox 98.4 5.8E-07 1.3E-11 85.4 8.0 44 176-219 533-576 (593)
76 cd06848 GCS_H Glycine cleavage 98.4 5.9E-07 1.3E-11 65.8 6.1 43 176-218 29-72 (96)
77 TIGR02712 urea_carbox urea car 98.4 3.7E-07 7.9E-12 93.0 5.9 45 175-219 1140-1184(1201)
78 cd06849 lipoyl_domain Lipoyl d 98.3 3E-06 6.5E-11 56.7 7.5 55 164-218 3-57 (74)
79 TIGR03077 not_gcvH glycine cle 98.3 1.4E-06 2.9E-11 65.5 5.0 43 176-218 30-73 (110)
80 COG1038 PycA Pyruvate carboxyl 98.3 5.3E-06 1.1E-10 79.8 10.0 44 176-219 1088-1131(1149)
81 KOG0238|consensus 98.3 8.5E-07 1.8E-11 81.3 4.4 61 57-118 609-669 (670)
82 PRK10476 multidrug resistance 98.3 3.2E-06 6.9E-11 75.3 7.8 36 87-123 209-244 (346)
83 COG4770 Acetyl/propionyl-CoA c 98.2 1.8E-06 3.9E-11 80.1 6.3 43 176-218 584-626 (645)
84 PRK09783 copper/silver efflux 98.2 6.3E-06 1.4E-10 75.2 9.6 70 56-126 130-248 (409)
85 TIGR03077 not_gcvH glycine cle 98.2 2.2E-06 4.7E-11 64.4 4.9 49 58-106 30-79 (110)
86 PRK12999 pyruvate carboxylase; 98.2 2.4E-06 5.1E-11 86.8 6.6 44 176-219 1085-1128(1146)
87 PRK09282 pyruvate carboxylase 98.2 9.4E-06 2E-10 77.3 10.0 45 175-219 530-574 (592)
88 PRK00624 glycine cleavage syst 98.2 4.5E-06 9.8E-11 63.1 6.1 43 176-218 32-75 (114)
89 TIGR00998 8a0101 efflux pump m 98.1 8.7E-06 1.9E-10 71.8 8.3 36 87-123 205-240 (334)
90 PRK00624 glycine cleavage syst 98.1 4.8E-06 1E-10 62.9 5.5 60 44-104 19-79 (114)
91 PRK10559 p-hydroxybenzoic acid 98.1 1.2E-05 2.5E-10 70.9 8.7 67 56-123 54-190 (310)
92 PRK13380 glycine cleavage syst 98.1 4E-06 8.6E-11 65.9 5.1 63 43-106 30-93 (144)
93 PRK13380 glycine cleavage syst 98.1 6.8E-06 1.5E-10 64.6 5.9 43 176-218 44-87 (144)
94 TIGR01730 RND_mfp RND family e 98.1 1.1E-05 2.4E-10 70.2 7.1 66 56-122 33-169 (322)
95 KOG0368|consensus 98.0 1.2E-05 2.6E-10 81.2 6.7 66 56-123 692-757 (2196)
96 TIGR00527 gcvH glycine cleavag 98.0 1.1E-05 2.4E-10 62.1 4.7 35 184-218 45-79 (127)
97 PRK01202 glycine cleavage syst 97.9 1.6E-05 3.4E-10 61.3 4.8 35 184-218 46-80 (127)
98 PRK15030 multidrug efflux syst 97.9 4.3E-05 9.3E-10 69.4 8.3 66 56-122 72-210 (397)
99 PRK15136 multidrug efflux syst 97.9 4.1E-05 8.8E-10 69.5 7.9 36 87-123 216-251 (390)
100 PRK09578 periplasmic multidrug 97.9 5E-05 1.1E-09 68.6 8.4 66 56-122 70-208 (385)
101 PRK01202 glycine cleavage syst 97.9 4.4E-05 9.5E-10 58.8 6.9 76 44-121 24-107 (127)
102 PRK09859 multidrug efflux syst 97.8 6.9E-05 1.5E-09 67.7 8.1 66 56-122 68-206 (385)
103 PRK03598 putative efflux pump 97.8 5.4E-05 1.2E-09 66.9 6.9 35 87-122 204-238 (331)
104 KOG0369|consensus 97.7 4.7E-05 1E-09 72.3 5.7 43 176-218 1115-1157(1176)
105 PF13533 Biotin_lipoyl_2: Biot 97.7 4.1E-05 8.9E-10 49.3 3.8 29 57-85 10-38 (50)
106 TIGR00527 gcvH glycine cleavag 97.7 4.4E-05 9.5E-10 58.8 4.5 49 58-106 36-85 (127)
107 PRK12784 hypothetical protein; 97.7 0.00037 8E-09 48.5 7.8 65 56-121 12-77 (84)
108 PRK11556 multidrug efflux syst 97.7 0.00013 2.7E-09 66.8 7.2 65 56-121 94-231 (415)
109 PRK11578 macrolide transporter 97.6 0.00019 4.1E-09 64.5 7.9 65 57-122 69-221 (370)
110 PF13533 Biotin_lipoyl_2: Biot 97.6 0.00012 2.6E-09 47.1 4.5 36 86-122 2-37 (50)
111 PF01597 GCV_H: Glycine cleava 97.5 0.0002 4.3E-09 54.8 5.7 47 58-104 31-78 (122)
112 PF12700 HlyD_2: HlyD family s 97.5 0.00012 2.7E-09 63.8 4.2 25 57-82 29-53 (328)
113 PF01597 GCV_H: Glycine cleava 97.4 0.00034 7.3E-09 53.5 5.8 43 176-218 31-74 (122)
114 TIGR02971 heterocyst_DevB ABC 97.4 0.00057 1.2E-08 60.2 7.3 34 88-123 206-239 (327)
115 COG0509 GcvH Glycine cleavage 97.3 0.00024 5.2E-09 54.6 3.9 36 183-218 47-82 (131)
116 TIGR01347 sucB 2-oxoglutarate 97.3 0.0014 3E-08 59.9 8.7 65 93-201 13-77 (403)
117 COG0509 GcvH Glycine cleavage 97.2 0.00056 1.2E-08 52.6 4.7 61 43-104 25-86 (131)
118 COG1566 EmrA Multidrug resista 97.1 0.0031 6.8E-08 56.5 8.9 35 88-123 210-244 (352)
119 KOG0238|consensus 97.1 0.00047 1E-08 63.7 3.6 43 176-218 610-652 (670)
120 TIGR00999 8a0102 Membrane Fusi 97.1 0.0017 3.7E-08 55.1 6.9 34 88-122 90-123 (265)
121 PF13375 RnfC_N: RnfC Barrel s 97.0 0.0015 3.2E-08 48.3 4.7 43 175-218 38-80 (101)
122 PLN02528 2-oxoisovalerate dehy 96.9 0.0043 9.4E-08 56.9 8.6 66 93-202 11-76 (416)
123 TIGR03309 matur_yqeB selenium- 96.9 0.0039 8.5E-08 53.3 7.3 59 57-122 172-230 (256)
124 PF13375 RnfC_N: RnfC Barrel s 96.8 0.0057 1.2E-07 45.2 6.9 47 57-104 38-84 (101)
125 PRK12784 hypothetical protein; 96.7 0.013 2.7E-07 40.9 7.3 74 87-203 6-79 (84)
126 TIGR01349 PDHac_trf_mito pyruv 96.5 0.0096 2.1E-07 55.0 7.8 67 92-202 11-78 (435)
127 COG3608 Predicted deacylase [G 96.4 0.011 2.3E-07 52.5 6.9 60 57-119 263-325 (331)
128 PF05896 NQRA: Na(+)-transloca 96.3 0.0072 1.6E-07 51.8 4.9 44 59-107 39-84 (257)
129 PF05896 NQRA: Na(+)-transloca 96.2 0.0055 1.2E-07 52.5 4.1 37 179-218 41-79 (257)
130 PRK09783 copper/silver efflux 96.2 0.038 8.3E-07 50.5 9.8 116 77-199 113-241 (409)
131 cd06251 M14_ASTE_ASPA_like_1 A 96.1 0.027 5.8E-07 49.1 8.1 58 58-118 227-286 (287)
132 cd06253 M14_ASTE_ASPA_like_3 A 96.1 0.027 5.8E-07 49.4 7.9 59 57-118 236-297 (298)
133 KOG0368|consensus 96.1 0.0078 1.7E-07 61.8 4.8 45 174-218 692-736 (2196)
134 cd06252 M14_ASTE_ASPA_like_2 A 95.9 0.044 9.6E-07 48.4 8.3 60 57-119 251-314 (316)
135 cd06250 M14_PaAOTO_like An unc 95.8 0.038 8.2E-07 49.8 7.8 59 57-118 296-358 (359)
136 PF13437 HlyD_3: HlyD family s 95.6 0.023 5E-07 41.4 4.6 34 88-122 1-34 (105)
137 TIGR02994 ectoine_eutE ectoine 95.6 0.06 1.3E-06 47.9 7.9 59 57-118 262-324 (325)
138 PF09891 DUF2118: Uncharacteri 95.4 0.025 5.4E-07 44.7 4.5 49 56-104 87-136 (150)
139 TIGR03309 matur_yqeB selenium- 95.0 0.044 9.5E-07 46.9 4.9 47 161-218 164-210 (256)
140 TIGR01936 nqrA NADH:ubiquinone 94.8 0.037 8.1E-07 51.2 4.4 42 176-218 38-79 (447)
141 TIGR01936 nqrA NADH:ubiquinone 94.8 0.064 1.4E-06 49.7 5.8 44 58-102 38-81 (447)
142 PF00529 HlyD: HlyD family sec 94.8 0.031 6.7E-07 48.1 3.6 34 87-121 2-35 (305)
143 PF00529 HlyD: HlyD family sec 94.7 0.023 5E-07 48.9 2.6 27 56-82 8-34 (305)
144 PRK05352 Na(+)-translocating N 94.5 0.046 1E-06 50.6 4.4 42 176-218 39-80 (448)
145 cd06254 M14_ASTE_ASPA_like_4 A 94.4 0.12 2.7E-06 44.9 6.6 56 57-115 230-287 (288)
146 PRK10476 multidrug resistance 94.2 0.093 2E-06 46.7 5.5 35 86-121 48-82 (346)
147 KOG3373|consensus 94.2 0.031 6.8E-07 44.4 2.1 36 183-218 88-123 (172)
148 TIGR02971 heterocyst_DevB ABC 94.2 0.083 1.8E-06 46.4 5.1 42 79-121 6-50 (327)
149 COG1726 NqrA Na+-transporting 94.2 0.062 1.3E-06 48.0 4.1 41 62-107 42-84 (447)
150 TIGR00998 8a0101 efflux pump m 94.1 0.069 1.5E-06 46.9 4.4 37 85-122 41-77 (334)
151 TIGR01945 rnfC electron transp 93.9 0.064 1.4E-06 49.5 3.9 42 176-218 40-81 (435)
152 COG1726 NqrA Na+-transporting 93.7 0.062 1.3E-06 48.1 3.2 37 180-219 42-80 (447)
153 TIGR01000 bacteriocin_acc bact 93.6 0.18 4E-06 46.6 6.5 53 58-121 41-93 (457)
154 PF09891 DUF2118: Uncharacteri 93.4 0.16 3.5E-06 40.2 4.8 44 175-218 88-132 (150)
155 COG3608 Predicted deacylase [G 93.4 0.16 3.4E-06 45.2 5.2 44 175-218 263-309 (331)
156 PRK05352 Na(+)-translocating N 93.3 0.09 2E-06 48.8 3.8 44 58-102 39-82 (448)
157 PRK11556 multidrug efflux syst 93.1 0.21 4.5E-06 45.8 5.9 60 60-121 62-121 (415)
158 cd00210 PTS_IIA_glc PTS_IIA, P 93.1 0.91 2E-05 34.8 8.5 26 176-201 79-104 (124)
159 PF00358 PTS_EIIA_1: phosphoen 93.1 0.71 1.5E-05 35.7 8.0 27 176-202 83-109 (132)
160 TIGR01945 rnfC electron transp 93.0 0.12 2.7E-06 47.6 4.2 43 58-101 40-82 (435)
161 KOG3373|consensus 92.9 0.079 1.7E-06 42.1 2.4 42 66-107 89-130 (172)
162 PRK09859 multidrug efflux syst 92.8 0.29 6.2E-06 44.2 6.3 56 64-121 40-95 (385)
163 TIGR01843 type_I_hlyD type I s 92.8 0.21 4.5E-06 45.1 5.4 33 162-200 272-305 (423)
164 PRK05035 electron transport co 92.8 0.14 2.9E-06 50.1 4.4 42 176-218 46-87 (695)
165 PRK11578 macrolide transporter 92.7 0.28 6E-06 44.0 6.1 41 79-121 55-95 (370)
166 PF12700 HlyD_2: HlyD family s 92.7 0.14 3.1E-06 44.4 4.0 40 79-122 16-55 (328)
167 PRK09439 PTS system glucose-sp 92.7 1.1 2.3E-05 36.3 8.7 27 176-202 101-127 (169)
168 COG4656 RnfC Predicted NADH:ub 92.7 0.11 2.4E-06 48.5 3.4 41 176-218 42-82 (529)
169 TIGR01730 RND_mfp RND family e 92.7 0.16 3.5E-06 44.0 4.3 35 86-121 26-60 (322)
170 PRK03598 putative efflux pump 92.6 0.16 3.4E-06 44.9 4.2 35 86-121 43-77 (331)
171 TIGR00830 PTBA PTS system, glu 92.6 1.2 2.5E-05 34.0 8.4 27 176-202 79-105 (121)
172 PF07831 PYNP_C: Pyrimidine nu 92.6 0.13 2.9E-06 35.8 2.9 29 56-84 29-57 (75)
173 PRK10559 p-hydroxybenzoic acid 92.5 0.17 3.6E-06 44.6 4.2 35 87-122 48-82 (310)
174 TIGR01843 type_I_hlyD type I s 92.5 0.12 2.7E-06 46.5 3.6 32 89-121 274-306 (423)
175 PRK15136 multidrug efflux syst 92.4 0.2 4.2E-06 45.6 4.7 35 86-121 61-95 (390)
176 TIGR03794 NHPM_micro_HlyD NHPM 92.3 0.27 5.8E-06 45.0 5.5 32 163-200 255-286 (421)
177 PRK09578 periplasmic multidrug 92.2 0.38 8.2E-06 43.4 6.3 56 64-121 42-97 (385)
178 cd06251 M14_ASTE_ASPA_like_1 A 92.1 0.41 8.9E-06 41.7 6.2 41 178-218 229-271 (287)
179 TIGR03794 NHPM_micro_HlyD NHPM 92.1 0.17 3.7E-06 46.3 4.0 32 88-120 255-286 (421)
180 cd06255 M14_ASTE_ASPA_like_5 A 92.0 0.61 1.3E-05 40.8 7.1 43 58-100 239-283 (293)
181 cd06253 M14_ASTE_ASPA_like_3 A 92.0 0.4 8.6E-06 42.1 5.9 43 176-218 237-282 (298)
182 PF07831 PYNP_C: Pyrimidine nu 91.9 0.26 5.7E-06 34.3 3.8 29 174-202 29-57 (75)
183 TIGR01000 bacteriocin_acc bact 91.8 0.17 3.6E-06 46.9 3.6 27 56-82 66-92 (457)
184 cd06250 M14_PaAOTO_like An unc 91.4 0.44 9.5E-06 43.0 5.7 43 176-218 297-343 (359)
185 PRK15030 multidrug efflux syst 91.0 0.34 7.4E-06 44.0 4.6 42 78-121 58-99 (397)
186 cd06254 M14_ASTE_ASPA_like_4 A 90.8 0.65 1.4E-05 40.4 6.0 43 176-218 231-275 (288)
187 cd06252 M14_ASTE_ASPA_like_2 A 90.7 0.56 1.2E-05 41.4 5.6 42 176-217 252-297 (316)
188 COG4072 Uncharacterized protei 90.7 0.62 1.3E-05 36.1 5.0 46 56-101 98-144 (161)
189 PRK05035 electron transport co 90.3 0.28 6E-06 48.0 3.5 43 58-101 46-88 (695)
190 PF13437 HlyD_3: HlyD family s 89.9 0.71 1.5E-05 33.4 4.8 28 56-83 6-33 (105)
191 COG0845 AcrA Membrane-fusion p 89.7 0.36 7.8E-06 41.7 3.6 65 56-121 73-211 (372)
192 TIGR02994 ectoine_eutE ectoine 89.7 0.72 1.6E-05 41.0 5.4 43 176-218 263-309 (325)
193 COG4656 RnfC Predicted NADH:ub 89.5 0.38 8.1E-06 45.1 3.6 42 58-101 42-83 (529)
194 TIGR00164 PS_decarb_rel phosph 89.1 3.9 8.5E-05 33.4 9.0 92 57-197 80-183 (189)
195 TIGR00164 PS_decarb_rel phosph 88.2 1.5 3.2E-05 35.9 5.9 53 58-116 130-182 (189)
196 PF04952 AstE_AspA: Succinylgl 88.0 1.3 2.9E-05 38.1 5.9 59 58-119 228-290 (292)
197 PF02749 QRPTase_N: Quinolinat 87.9 0.47 1E-05 33.8 2.5 22 61-82 47-68 (88)
198 COG2190 NagE Phosphotransferas 87.6 1.7 3.6E-05 34.6 5.7 29 57-85 85-113 (156)
199 PRK05305 phosphatidylserine de 87.5 1.6 3.5E-05 36.1 5.9 52 58-115 150-201 (206)
200 cd06255 M14_ASTE_ASPA_like_5 A 87.4 1.2 2.6E-05 38.9 5.2 43 176-218 239-283 (293)
201 COG4072 Uncharacterized protei 87.1 1.3 2.8E-05 34.4 4.6 45 174-218 98-143 (161)
202 COG0845 AcrA Membrane-fusion p 87.1 1.9 4.1E-05 37.1 6.4 41 78-120 59-99 (372)
203 COG1566 EmrA Multidrug resista 86.7 1.1 2.3E-05 40.4 4.6 35 86-121 53-87 (352)
204 TIGR00830 PTBA PTS system, glu 86.6 0.68 1.5E-05 35.3 2.8 29 57-85 78-106 (121)
205 PF06898 YqfD: Putative stage 86.6 4.7 0.0001 36.7 8.8 52 57-116 167-225 (385)
206 PRK10255 PTS system N-acetyl g 86.5 3.6 7.8E-05 40.1 8.4 28 175-202 578-605 (648)
207 PRK05305 phosphatidylserine de 86.3 8.3 0.00018 31.9 9.5 92 56-196 98-202 (206)
208 cd00210 PTS_IIA_glc PTS_IIA, P 85.8 0.83 1.8E-05 35.0 3.0 29 57-85 78-106 (124)
209 PF02749 QRPTase_N: Quinolinat 84.1 1.1 2.4E-05 31.9 2.8 24 178-201 46-69 (88)
210 PRK09439 PTS system glucose-sp 83.1 1.1 2.5E-05 36.1 2.8 29 57-85 100-128 (169)
211 PF02666 PS_Dcarbxylase: Phosp 82.7 2.9 6.4E-05 34.4 5.2 58 56-116 143-201 (202)
212 PF00358 PTS_EIIA_1: phosphoen 82.3 0.83 1.8E-05 35.4 1.7 29 57-85 82-110 (132)
213 PRK14844 bifunctional DNA-dire 82.3 11 0.00024 42.2 10.3 44 62-107 2423-2466(2836)
214 TIGR01995 PTS-II-ABC-beta PTS 82.0 2.2 4.8E-05 41.2 4.8 29 57-85 542-570 (610)
215 TIGR01995 PTS-II-ABC-beta PTS 81.1 6.7 0.00014 38.0 7.7 28 175-202 542-569 (610)
216 PRK09824 PTS system beta-gluco 80.3 6.2 0.00014 38.3 7.2 28 175-202 558-585 (627)
217 PRK09824 PTS system beta-gluco 78.4 3.3 7.2E-05 40.2 4.7 29 57-85 558-586 (627)
218 COG2190 NagE Phosphotransferas 76.8 2.2 4.7E-05 34.0 2.5 28 175-202 85-112 (156)
219 PRK02597 rpoC2 DNA-directed RN 76.7 27 0.00058 36.9 10.8 38 62-99 404-448 (1331)
220 COG0157 NadC Nicotinate-nucleo 72.7 4.2 9.2E-05 35.4 3.4 25 59-83 64-88 (280)
221 PRK14698 V-type ATP synthase s 71.2 14 0.00031 37.9 7.3 69 45-122 106-181 (1017)
222 PRK03934 phosphatidylserine de 70.5 8.9 0.00019 33.1 5.0 55 59-118 211-265 (265)
223 TIGR02643 T_phosphoryl thymidi 68.4 4.7 0.0001 37.4 2.9 28 55-82 376-403 (437)
224 cd01134 V_A-ATPase_A V/A-type 68.1 21 0.00044 32.4 6.8 68 46-122 38-112 (369)
225 COG0157 NadC Nicotinate-nucleo 68.0 5.6 0.00012 34.6 3.2 24 178-201 65-88 (280)
226 PRK05820 deoA thymidine phosph 67.4 5.1 0.00011 37.2 3.0 28 55-82 377-404 (440)
227 PRK03140 phosphatidylserine de 67.2 8.8 0.00019 33.0 4.3 56 58-117 202-257 (259)
228 TIGR01042 V-ATPase_V1_A V-type 66.8 16 0.00035 35.1 6.2 56 64-122 123-181 (591)
229 PRK10255 PTS system N-acetyl g 66.3 10 0.00022 36.9 4.9 29 57-85 578-606 (648)
230 COG1155 NtpA Archaeal/vacuolar 66.0 20 0.00043 34.1 6.5 57 65-123 122-180 (588)
231 PF02666 PS_Dcarbxylase: Phosp 65.5 45 0.00096 27.3 8.0 95 56-196 88-201 (202)
232 PRK06078 pyrimidine-nucleoside 65.4 6.2 0.00013 36.6 3.1 30 55-84 372-401 (434)
233 PF01551 Peptidase_M23: Peptid 65.3 5.6 0.00012 28.2 2.3 26 58-83 50-75 (96)
234 PF04952 AstE_AspA: Succinylgl 63.7 14 0.0003 31.7 4.9 42 176-217 228-273 (292)
235 PRK08072 nicotinate-nucleotide 63.5 8.8 0.00019 33.4 3.6 22 61-82 66-87 (277)
236 TIGR02644 Y_phosphoryl pyrimid 63.5 8.1 0.00018 35.5 3.5 29 55-83 370-398 (405)
237 TIGR02645 ARCH_P_rylase putati 63.0 7.8 0.00017 36.5 3.3 29 54-82 442-470 (493)
238 PRK04350 thymidine phosphoryla 62.1 8.5 0.00018 36.2 3.4 29 54-82 434-462 (490)
239 TIGR02876 spore_yqfD sporulati 61.5 15 0.00033 33.4 4.8 36 181-216 207-242 (382)
240 TIGR03327 AMP_phos AMP phospho 60.8 8.8 0.00019 36.2 3.3 29 54-82 443-471 (500)
241 PRK06096 molybdenum transport 59.8 11 0.00024 32.9 3.6 23 60-82 62-84 (284)
242 PRK06543 nicotinate-nucleotide 59.8 11 0.00025 32.8 3.6 23 60-82 66-88 (281)
243 PRK06078 pyrimidine-nucleoside 59.6 10 0.00022 35.2 3.4 29 174-202 373-401 (434)
244 cd01572 QPRTase Quinolinate ph 59.1 13 0.00027 32.2 3.8 25 58-82 57-81 (268)
245 PRK05742 nicotinate-nucleotide 58.9 12 0.00026 32.6 3.6 22 61-82 68-89 (277)
246 PRK09016 quinolinate phosphori 57.6 13 0.00027 32.8 3.5 22 61-82 87-108 (296)
247 cd01573 modD_like ModD; Quinol 57.5 13 0.00027 32.3 3.5 24 59-82 56-79 (272)
248 TIGR00999 8a0102 Membrane Fusi 57.3 14 0.0003 31.0 3.7 32 45-82 90-121 (265)
249 cd01568 QPRTase_NadC Quinolina 57.0 13 0.00029 32.0 3.6 25 58-82 56-80 (269)
250 PRK06978 nicotinate-nucleotide 57.0 13 0.00029 32.6 3.5 23 60-82 83-105 (294)
251 TIGR02643 T_phosphoryl thymidi 56.8 13 0.00028 34.6 3.6 27 174-200 377-403 (437)
252 TIGR00163 PS_decarb phosphatid 56.6 15 0.00032 31.2 3.7 48 68-117 189-236 (238)
253 TIGR02644 Y_phosphoryl pyrimid 56.5 14 0.0003 34.0 3.7 29 173-201 370-398 (405)
254 PRK05848 nicotinate-nucleotide 56.2 14 0.0003 32.1 3.5 22 61-82 60-81 (273)
255 PF01333 Apocytochr_F_C: Apocy 56.1 28 0.0006 26.3 4.6 16 89-104 5-20 (118)
256 PRK05820 deoA thymidine phosph 56.0 14 0.0003 34.4 3.6 28 174-201 378-405 (440)
257 PLN02716 nicotinate-nucleotide 55.9 14 0.00031 32.6 3.6 24 59-82 78-101 (308)
258 PF01551 Peptidase_M23: Peptid 55.8 12 0.00026 26.5 2.6 24 178-201 52-75 (96)
259 PRK07896 nicotinate-nucleotide 55.6 14 0.00031 32.3 3.5 23 60-82 77-99 (289)
260 PRK07428 nicotinate-nucleotide 55.3 14 0.00031 32.3 3.5 23 60-82 73-95 (288)
261 PRK06106 nicotinate-nucleotide 54.8 15 0.00033 32.0 3.6 24 59-82 70-93 (281)
262 TIGR02645 ARCH_P_rylase putati 54.8 16 0.00035 34.5 3.9 29 173-201 443-471 (493)
263 PRK08072 nicotinate-nucleotide 54.5 15 0.00034 31.9 3.6 23 179-201 66-88 (277)
264 PRK04350 thymidine phosphoryla 54.1 16 0.00036 34.3 3.9 29 173-201 435-463 (490)
265 KOG1668|consensus 53.8 7.7 0.00017 32.8 1.5 27 180-206 181-207 (231)
266 TIGR01334 modD putative molybd 53.4 17 0.00036 31.7 3.6 24 59-82 60-83 (277)
267 PRK08385 nicotinate-nucleotide 53.1 17 0.00036 31.7 3.5 24 59-82 58-81 (278)
268 PRK04192 V-type ATP synthase s 52.6 38 0.00082 32.7 6.1 57 64-123 123-182 (586)
269 TIGR00078 nadC nicotinate-nucl 52.6 18 0.00038 31.3 3.6 22 61-82 56-77 (265)
270 cd01572 QPRTase Quinolinate ph 52.5 20 0.00044 30.9 4.0 26 176-201 57-82 (268)
271 TIGR03327 AMP_phos AMP phospho 51.7 18 0.00039 34.2 3.7 29 173-201 444-472 (500)
272 PRK06096 molybdenum transport 51.2 18 0.0004 31.6 3.5 24 178-201 62-85 (284)
273 PRK06543 nicotinate-nucleotide 51.1 19 0.00041 31.4 3.6 24 178-201 66-89 (281)
274 PF06898 YqfD: Putative stage 51.1 23 0.0005 32.2 4.3 29 55-83 195-232 (385)
275 PRK05742 nicotinate-nucleotide 50.7 19 0.00042 31.3 3.5 23 179-201 68-90 (277)
276 PRK00044 psd phosphatidylserin 49.9 22 0.00048 31.0 3.8 58 59-119 224-286 (288)
277 PRK10871 nlpD lipoprotein NlpD 48.9 11 0.00024 33.6 1.7 20 63-82 272-291 (319)
278 PRK09603 bifunctional DNA-dire 48.7 66 0.0014 36.7 7.7 19 63-81 2616-2634(2890)
279 PRK06978 nicotinate-nucleotide 48.2 22 0.00047 31.3 3.5 24 178-201 83-106 (294)
280 PRK02597 rpoC2 DNA-directed RN 47.8 28 0.00061 36.7 4.7 36 181-216 405-447 (1331)
281 CHL00117 rpoC2 RNA polymerase 47.6 24 0.00053 37.4 4.2 37 180-216 405-449 (1364)
282 PRK07428 nicotinate-nucleotide 47.4 23 0.00049 31.1 3.5 23 179-201 74-96 (288)
283 PRK09016 quinolinate phosphori 47.1 23 0.0005 31.2 3.5 23 179-201 87-109 (296)
284 PRK07896 nicotinate-nucleotide 46.8 23 0.00051 31.0 3.5 24 178-201 77-100 (289)
285 cd01568 QPRTase_NadC Quinolina 46.6 25 0.00053 30.4 3.6 24 178-201 58-81 (269)
286 cd01573 modD_like ModD; Quinol 46.2 24 0.00052 30.5 3.4 24 178-201 57-80 (272)
287 PLN02716 nicotinate-nucleotide 45.6 26 0.00056 31.0 3.6 25 177-201 78-102 (308)
288 PRK06106 nicotinate-nucleotide 45.4 26 0.00057 30.6 3.5 25 177-201 70-94 (281)
289 cd06910 M14_ASTE_ASPA_like_7 A 45.1 40 0.00086 29.0 4.7 45 65-117 226-271 (272)
290 PRK05848 nicotinate-nucleotide 44.6 27 0.00058 30.4 3.5 23 179-201 60-82 (273)
291 TIGR01334 modD putative molybd 44.0 28 0.00061 30.3 3.5 24 178-201 61-84 (277)
292 TIGR01043 ATP_syn_A_arch ATP s 43.2 60 0.0013 31.3 5.9 53 65-120 121-176 (578)
293 PRK08385 nicotinate-nucleotide 42.7 30 0.00064 30.2 3.5 24 178-201 59-82 (278)
294 COG0213 DeoA Thymidine phospho 42.4 31 0.00067 31.9 3.6 28 173-200 373-400 (435)
295 CHL00117 rpoC2 RNA polymerase 41.3 42 0.0009 35.7 4.8 40 62-101 405-452 (1364)
296 PRK08662 nicotinate phosphorib 40.2 33 0.00071 30.8 3.5 24 57-82 69-92 (343)
297 TIGR00078 nadC nicotinate-nucl 40.0 36 0.00078 29.4 3.6 23 179-201 56-78 (265)
298 PRK06559 nicotinate-nucleotide 39.9 35 0.00075 30.0 3.5 24 59-82 71-96 (290)
299 COG0213 DeoA Thymidine phospho 39.6 34 0.00074 31.6 3.5 20 100-120 381-400 (435)
300 PRK10871 nlpD lipoprotein NlpD 34.7 28 0.0006 31.0 2.0 20 180-199 271-290 (319)
301 PRK07188 nicotinate phosphorib 32.8 54 0.0012 29.6 3.6 24 59-82 71-94 (352)
302 KOG1668|consensus 32.8 27 0.00058 29.6 1.6 27 62-88 181-207 (231)
303 cd01134 V_A-ATPase_A V/A-type 32.3 79 0.0017 28.8 4.5 37 182-218 54-93 (369)
304 PRK06559 nicotinate-nucleotide 31.8 56 0.0012 28.7 3.4 25 177-201 71-97 (290)
305 cd00516 PRTase_typeII Phosphor 31.6 56 0.0012 27.9 3.5 26 58-83 49-74 (281)
306 COG0739 NlpD Membrane proteins 29.9 36 0.00077 28.5 1.9 20 62-81 215-234 (277)
307 PF09923 DUF2155: Uncharacteri 28.4 1.2E+02 0.0026 21.7 4.2 51 56-106 9-59 (90)
308 PTZ00403 phosphatidylserine de 27.3 78 0.0017 28.6 3.7 58 58-119 281-339 (353)
309 TIGR02876 spore_yqfD sporulati 27.0 1.6E+02 0.0035 26.7 5.8 54 57-117 163-223 (382)
310 TIGR02388 rpoC2_cyan DNA-direc 26.9 94 0.002 32.7 4.5 36 181-216 405-447 (1227)
311 PRK14844 bifunctional DNA-dire 26.7 79 0.0017 36.0 4.1 36 179-216 2422-2457(2836)
312 PRK11649 putative peptidase; P 26.3 44 0.00095 31.0 2.0 19 63-81 365-383 (439)
313 PRK08662 nicotinate phosphorib 26.1 69 0.0015 28.7 3.1 21 181-201 73-93 (343)
314 cd01571 NAPRTase_B Nicotinate 25.5 86 0.0019 27.5 3.6 23 58-82 53-75 (302)
315 PRK11637 AmiB activator; Provi 25.2 30 0.00066 31.7 0.7 19 64-82 382-400 (428)
316 PRK07188 nicotinate phosphorib 24.8 87 0.0019 28.3 3.5 24 178-201 72-95 (352)
317 COG2258 Uncharacterized protei 22.8 1.3E+02 0.0029 25.1 4.0 74 46-122 76-164 (210)
318 COG0739 NlpD Membrane proteins 22.5 58 0.0013 27.2 1.9 19 180-198 215-233 (277)
319 PRK09603 bifunctional DNA-dire 22.5 5.1E+02 0.011 30.2 9.1 45 61-107 2513-2568(2890)
320 PRK11536 6-N-hydroxylaminopuri 21.4 1.3E+02 0.0027 25.4 3.6 73 46-121 79-166 (223)
321 TIGR02388 rpoC2_cyan DNA-direc 21.3 1.2E+02 0.0026 32.0 4.1 38 62-99 404-448 (1227)
322 cd06910 M14_ASTE_ASPA_like_7 A 20.9 1.1E+02 0.0024 26.2 3.4 30 183-216 226-256 (272)
323 PHA01474 nonstructural protein 20.6 44 0.00096 20.6 0.5 17 1-17 1-18 (52)
No 1
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.97 E-value=6.4e-30 Score=240.75 Aligned_cols=177 Identities=32% Similarity=0.518 Sum_probs=136.3
Q ss_pred ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
|.+.|+||++|.+|.+|+|.+|+|++||.|+.||.||++|+||+.+++.|+.+|+|.++++++|+. |.+|+.|+.+...
T Consensus 1 M~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~-v~vG~~ia~i~~~ 79 (590)
T TIGR02927 1 MAFSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDT-VDIGGEIAIIGEA 79 (590)
T ss_pred CCeeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCE-EeeeeeEEEEeec
Confidence 456899999999999999999999999999999999999999999999999999999999999999 9999999998754
Q ss_pred Ccccccccc--ccCCC-CccccC-----CCCCCCCC----CCCC---CCCCC-CCceeeccCCCCCCcccceeeeEeecC
Q psy10439 122 GEDWQNVSV--SATSP-SATASA-----SSASPPPP----PPAP---SSGGS-VPGQIINMPSLSPTMTEGTIVKWLKKE 185 (219)
Q Consensus 122 ~~~~~~~~~--~~~~~-a~~a~a-----~a~a~~~a----~~~a---a~~~~-~~~~~i~~P~lg~~~~~~~i~~~~v~~ 185 (219)
++....... ..+.. +..++. ......+. ..+. ++... .....+.||++|.++.+|+|.+|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~P~lg~~~~eg~i~~w~v~~ 159 (590)
T TIGR02927 80 GEASAEAGAEDSAAAAEPEEAPAEEAPKEEPKAAPAESVEQAPAESSAPSQGGGAATDIEMPELGESVTEGTITQWLKAV 159 (590)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccCCCceEEEcCCCCCCcceEEEEEEEeCC
Confidence 332110100 00000 000000 00000000 0000 01101 223689999999999999999999999
Q ss_pred CCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 186 GDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 186 Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
||.|++||.||+||+||+++||+||++|+|.+|+
T Consensus 160 Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~ 193 (590)
T TIGR02927 160 GDKIEVDEPILEVSTDKVDTEIPSPVAGTILEIL 193 (590)
T ss_pred CCEecCCCEeEEEEecceeeEEcCCCCeEEEEEe
Confidence 9999999999999999999999999999999974
No 2
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.96 E-value=1.8e-28 Score=229.63 Aligned_cols=175 Identities=30% Similarity=0.503 Sum_probs=134.7
Q ss_pred ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
|.++|+||++|+ +.+|+|.+|+|++||.|++||.|++||+||+.++|+|+.+|+|.++++++|+. |..|++|+.+.+.
T Consensus 1 M~~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~-V~~G~~L~~i~~~ 78 (547)
T PRK11855 1 MAIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDT-VSVGGLLAVIEAA 78 (547)
T ss_pred CCceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCE-ecCCceeeEeccc
Confidence 557899999999 99999999999999999999999999999999999999999999999999999 9999999999754
Q ss_pred CccccccccccCCCCccccCCCCCCC-CCCCCCCCCCCCCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEee
Q psy10439 122 GEDWQNVSVSATSPSATASASSASPP-PPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQT 200 (219)
Q Consensus 122 ~~~~~~~~~~~~~~a~~a~a~a~a~~-~a~~~aa~~~~~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~ 200 (219)
..................+..++... +.+....+........+.+|++|. +.+|+|.+|++++||.|++||.|+++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vet 157 (547)
T PRK11855 79 GAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVET 157 (547)
T ss_pred ccccccccccccccccccccccccccccccccccCcccCCceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEe
Confidence 43111110000000000000000000 000000011111246899999999 9999999999999999999999999999
Q ss_pred cceeeeeeCCCCeEEEEcC
Q psy10439 201 DKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 201 ~K~~~~i~a~~~G~v~~i~ 219 (219)
||+.++|.||++|+|.+|+
T Consensus 158 dK~~~ev~Ap~~G~v~~i~ 176 (547)
T PRK11855 158 DKATMEIPSPVAGVVKEIK 176 (547)
T ss_pred cceeEEecCCCCeEEEEEe
Confidence 9999999999999999874
No 3
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.96 E-value=9.8e-28 Score=224.28 Aligned_cols=171 Identities=25% Similarity=0.418 Sum_probs=131.4
Q ss_pred eEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439 44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE 123 (219)
Q Consensus 44 ~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~ 123 (219)
++|+||+||.. .+|+|++|+|++||.|++||.|++||+||+.++|.|+.+|+|.+++++.|+. |..|++|+.|...+.
T Consensus 1 ~~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~-V~~G~~La~i~~~~~ 78 (546)
T TIGR01348 1 TEIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDT-LPVGGVIATLEVGAG 78 (546)
T ss_pred CceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCE-EeccceEEEEecccc
Confidence 36899999987 8999999999999999999999999999999999999999999999999999 999999999964332
Q ss_pred cccccccccCCCCccccCCCCCCCCCCCCCCCCC--CCCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeec
Q psy10439 124 DWQNVSVSATSPSATASASSASPPPPPPAPSSGG--SVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 124 ~~~~~~~~~~~~a~~a~a~a~a~~~a~~~aa~~~--~~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
..... ......++...+....+. ......+.. ......+.||++|. +++|+|.+|+|++||.|++||.||++|+|
T Consensus 79 ~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetd 155 (546)
T TIGR01348 79 AQAQA-EAKKEAAPAPTAGAPAPA-AQAQAAPAAGQSSGVQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESD 155 (546)
T ss_pred ccccc-cccccccccccccccccc-ccccccccccccCCceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEec
Confidence 11100 000000000000000000 000000111 11236899999999 99999999999999999999999999999
Q ss_pred ceeeeeeCCCCeEEEEcC
Q psy10439 202 KAVMSFETEEEGILAKIL 219 (219)
Q Consensus 202 K~~~~i~a~~~G~v~~i~ 219 (219)
|+.++|+||++|+|.+|+
T Consensus 156 K~~~ei~a~~~G~v~~i~ 173 (546)
T TIGR01348 156 KASMEVPAPASGVVKSVK 173 (546)
T ss_pred ceeeEecCCCCcEEEEEe
Confidence 999999999999999874
No 4
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.95 E-value=1.5e-26 Score=219.84 Aligned_cols=161 Identities=24% Similarity=0.368 Sum_probs=129.9
Q ss_pred ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
|..+|+||+|| +++|+|.+|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+. |.+|++|+.|+..
T Consensus 1 m~~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~-V~~G~~l~~i~~~ 77 (633)
T PRK11854 1 MAIEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDK-VETGALIMIFESA 77 (633)
T ss_pred CCceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCE-EeCCCEEEEEecc
Confidence 45689999999 99999999999999999999999999999999999999999999999999999 9999999999654
Q ss_pred CccccccccccCCCCccccCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeec
Q psy10439 122 GEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 122 ~~~~~~~~~~~~~~a~~a~a~a~a~~~a~~~aa~~~~~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
+.. . . ..+ +.......... ++.........+.+|.+| +.+|++.+|++++||.|++||.|+.+|+|
T Consensus 78 ~~~-~----~--~~~--~~~~~~~~~~~---~~~~~~~~~~~i~lp~~g--~~eg~v~~~~v~~Gd~V~~g~~l~~vEa~ 143 (633)
T PRK11854 78 DGA-A----D--AAP--AQAEEKKEAAP---AAAPAAAAAKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQSLITVEGD 143 (633)
T ss_pred ccc-c----c--ccc--ccccccccccc---ccccccCCceEEecccCC--CCCceEeEEEeCCCCEECCCCEeeeeehh
Confidence 211 0 0 000 00000000000 001111223579999999 88999999999999999999999999999
Q ss_pred ceeeeeeCCCCeEEEEcC
Q psy10439 202 KAVMSFETEEEGILAKIL 219 (219)
Q Consensus 202 K~~~~i~a~~~G~v~~i~ 219 (219)
|+.++|.||++|+|.+++
T Consensus 144 K~~~~I~Ap~~G~V~~i~ 161 (633)
T PRK11854 144 KASMEVPAPFAGTVKEIK 161 (633)
T ss_pred hceeEEeCCCCEEEEEEE
Confidence 999999999999998863
No 5
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.95 E-value=1.7e-26 Score=219.50 Aligned_cols=160 Identities=26% Similarity=0.357 Sum_probs=132.3
Q ss_pred cceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439 41 DAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE 120 (219)
Q Consensus 41 ~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~ 120 (219)
.+.+.++||++| +.+|+|.+|+|++||.|++||.|+.+|+||+..+|.||++|+|.++++++|+. |..|++|+.+..
T Consensus 103 ~~~~~i~lp~~g--~~eg~v~~~~v~~Gd~V~~g~~l~~vEa~K~~~~I~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~ 179 (633)
T PRK11854 103 AAAKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK-VSTGSLIMVFEV 179 (633)
T ss_pred CCceEEecccCC--CCCceEeEEEeCCCCEECCCCEeeeeehhhceeEEeCCCCEEEEEEEecCCCE-EcCCcEeeEEec
Confidence 456789999999 89999999999999999999999999999999999999999999999999999 999999999975
Q ss_pred cCccccccccccCCCCccccCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEee
Q psy10439 121 EGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQT 200 (219)
Q Consensus 121 ~~~~~~~~~~~~~~~a~~a~a~a~a~~~a~~~aa~~~~~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~ 200 (219)
.+.... ..+ +. +....+.. .+........+.||++| +++|+|.+|++++||.|++||+||++|+
T Consensus 180 ~~~~~~----~~~-~~----~~~~~~~~-----~~~~a~~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vet 243 (633)
T PRK11854 180 AGEAPA----AAP-AA----AEAAAPAA-----APAAAAGVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEG 243 (633)
T ss_pred cccccc----ccc-cc----cccccccc-----cccccCCceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEe
Confidence 432211 000 00 00000000 01111234689999999 8999999999999999999999999999
Q ss_pred cceeeeeeCCCCeEEEEcC
Q psy10439 201 DKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 201 ~K~~~~i~a~~~G~v~~i~ 219 (219)
||+.++|+||++|+|.+|+
T Consensus 244 dK~~~~i~ap~~G~l~~i~ 262 (633)
T PRK11854 244 DKASMEVPAPFAGTVKEIK 262 (633)
T ss_pred cceeeEeeCCCCeEEEEEe
Confidence 9999999999999999874
No 6
>KOG0557|consensus
Probab=99.90 E-value=8.9e-24 Score=188.79 Aligned_cols=102 Identities=47% Similarity=0.785 Sum_probs=92.9
Q ss_pred eeeeeccC-CcceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeee
Q psy10439 32 ICLHTTNI-LDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVK 110 (219)
Q Consensus 32 ~~~~~~~~-~~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~ 110 (219)
+|+|.+.. ++.++.|.||.|+++|++|.|++|++++||++++||+||+|||||++++++++.+|+|++|++++|..+|.
T Consensus 26 ~~~~~~a~~~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvp 105 (470)
T KOG0557|consen 26 KCAHHSASKLPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVP 105 (470)
T ss_pred hhhccccccCCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCccccc
Confidence 34443333 89999999999999999999999999999999999999999999999999999999999999999977799
Q ss_pred cCcEEEEEeecCccccccccccC
Q psy10439 111 VGTLIAVMVEEGEDWQNVSVSAT 133 (219)
Q Consensus 111 ~G~~l~~i~~~~~~~~~~~~~~~ 133 (219)
+|.+|+.|.+.+++++++..+.+
T Consensus 106 VGk~Iaiive~e~di~~~k~~k~ 128 (470)
T KOG0557|consen 106 VGKPIAIIVEDEDDIAAFKLPKD 128 (470)
T ss_pred CCCceEEEecccccHHHhhcccc
Confidence 99999999999999887776655
No 7
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=99.87 E-value=6.9e-22 Score=178.86 Aligned_cols=82 Identities=60% Similarity=0.866 Sum_probs=78.7
Q ss_pred ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
|.++|+||+||++|+||+|++|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|+. |.+|++|++|...
T Consensus 1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~-V~Vg~~I~~i~~~ 79 (404)
T COG0508 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDT-VPVGAVIARIEEE 79 (404)
T ss_pred CCceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCE-EcCCCeEEEEecC
Confidence 568999999999999999999999999999999999999999999999999999999999999999 9999999999877
Q ss_pred Ccc
Q psy10439 122 GED 124 (219)
Q Consensus 122 ~~~ 124 (219)
+++
T Consensus 80 ~~~ 82 (404)
T COG0508 80 GAD 82 (404)
T ss_pred CCc
Confidence 654
No 8
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.83 E-value=3.3e-20 Score=167.79 Aligned_cols=109 Identities=28% Similarity=0.420 Sum_probs=93.2
Q ss_pred ccccccccccccccccccceeeeeeccCCcceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEec
Q psy10439 12 LASKFINPTYNNAFLNKSKIICLHTTNILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFET 91 (219)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~a 91 (219)
+|+---++|.++.+ -+.+.-..|.+.+....++|+||++|++|++|+|++|+|++||.|++||+||+||+||+.++|+|
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~A 92 (418)
T PTZ00144 14 LSSVKGMFRRFSLR-KLQPACSAHFSKSYFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRA 92 (418)
T ss_pred cccchhHHHHHhhh-ccchhhhhhcccccccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEec
Confidence 33333444444444 33444446888888889999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 92 EEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 92 p~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
|.+|+|.++++++|+. |.+|++|+.|+..+
T Consensus 93 p~~G~v~~i~v~~G~~-V~~G~~L~~I~~~~ 122 (418)
T PTZ00144 93 PASGVITKIFAEEGDT-VEVGAPLSEIDTGG 122 (418)
T ss_pred CCCeEEEEEEeCCCCE-ecCCCEEEEEcCCC
Confidence 9999999999999999 99999999997544
No 9
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.80 E-value=3.3e-19 Score=162.65 Aligned_cols=80 Identities=30% Similarity=0.574 Sum_probs=76.2
Q ss_pred CcceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439 40 LDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 40 ~~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
..| ++|+||++|++|++|+|.+|+|++||.|++||+||+||+||+.++|+||.+|+|.++++++||. |.+|++|+.|+
T Consensus 89 ~~m-~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~-V~vG~~L~~I~ 166 (463)
T PLN02226 89 GDT-VEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDT-VEPGTKVAIIS 166 (463)
T ss_pred CCc-eEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCE-ecCCCEEEEec
Confidence 345 6999999999999999999999999999999999999999999999999999999999999999 99999999996
Q ss_pred ec
Q psy10439 120 EE 121 (219)
Q Consensus 120 ~~ 121 (219)
+.
T Consensus 167 ~~ 168 (463)
T PLN02226 167 KS 168 (463)
T ss_pred cC
Confidence 54
No 10
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.80 E-value=1.7e-19 Score=126.33 Aligned_cols=74 Identities=50% Similarity=0.755 Sum_probs=71.9
Q ss_pred eEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 44 ~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
++|++|.+|..+.+++|.+|+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+. |..|++|+.|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~-V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDT-VEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEE-EETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence 4799999999999999999999999999999999999999999999999999999999999999 9999999876
No 11
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=99.77 E-value=3.7e-18 Score=158.56 Aligned_cols=93 Identities=54% Similarity=0.847 Sum_probs=88.0
Q ss_pred cceeeeeeccCCcceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC-e
Q psy10439 29 SKIICLHTTNILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT-T 107 (219)
Q Consensus 29 ~~~~~~~~~~~~~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd-~ 107 (219)
.+.|+|+.....+.+++|+||++|++|++|+|.+|+|++||.|++||.||+|||||++++++|+.+|+|.++++++|+ .
T Consensus 98 ~~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~ 177 (539)
T PLN02744 98 QSARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKE 177 (539)
T ss_pred cccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcc
Confidence 668999999889999999999999999999999999999999999999999999999999999999999999999996 7
Q ss_pred eeecCcEEEEEeecC
Q psy10439 108 DVKVGTLIAVMVEEG 122 (219)
Q Consensus 108 ~V~~G~~l~~i~~~~ 122 (219)
|++|++|+++.+.+
T Consensus 178 -v~vG~~ia~i~~~~ 191 (539)
T PLN02744 178 -IKVGEVIAITVEEE 191 (539)
T ss_pred -cCCCCEEEEEccCc
Confidence 99999999885443
No 12
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.75 E-value=6.2e-18 Score=149.56 Aligned_cols=80 Identities=36% Similarity=0.608 Sum_probs=76.3
Q ss_pred ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
|.++++||++|++|++|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+. |.+|+.|+.+.+.
T Consensus 1 ~~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~-v~~g~~l~~i~~~ 79 (371)
T PRK14875 1 SITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGET-LPVGALLAVVADA 79 (371)
T ss_pred CceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCE-eCCCCEEEEEecC
Confidence 357999999999999999999999999999999999999999999999999999999999999999 9999999999754
Q ss_pred C
Q psy10439 122 G 122 (219)
Q Consensus 122 ~ 122 (219)
.
T Consensus 80 ~ 80 (371)
T PRK14875 80 E 80 (371)
T ss_pred C
Confidence 3
No 13
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.75 E-value=1.3e-17 Score=151.12 Aligned_cols=81 Identities=42% Similarity=0.652 Sum_probs=77.1
Q ss_pred ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
|.++|+||++|++|++|+|.+|+|++||.|++||.||+||+||+.++|+||.+|+|.++++++|+. |.+|++|+.+++.
T Consensus 1 m~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~-V~~G~~l~~i~~~ 79 (407)
T PRK05704 1 MMVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDT-VTVGQVLGRIDEG 79 (407)
T ss_pred CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecC
Confidence 457999999999999999999999999999999999999999999999999999999999999999 9999999999765
Q ss_pred Cc
Q psy10439 122 GE 123 (219)
Q Consensus 122 ~~ 123 (219)
++
T Consensus 80 ~~ 81 (407)
T PRK05704 80 AA 81 (407)
T ss_pred Cc
Confidence 43
No 14
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=99.72 E-value=5.4e-17 Score=146.95 Aligned_cols=78 Identities=40% Similarity=0.698 Sum_probs=74.8
Q ss_pred eEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 44 ~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
++|+||++|++|++|+|++|+|++||.|++||.|+++|+||+.++++|+.+|+|.++++++|+. |.+|++|++|++.+
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~-v~vG~~l~~i~~~~ 78 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDT-VESGQVLAILEEGN 78 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999 99999999997543
No 15
>KOG0559|consensus
Probab=99.71 E-value=2.3e-17 Score=143.55 Aligned_cols=78 Identities=29% Similarity=0.590 Sum_probs=75.6
Q ss_pred eeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 43 QQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 43 ~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
..++..|.++++++||.|.+|++++||.|++++.+|+|||||.+++|.||.+|+|.++++++||. |..|+.|+.|...
T Consensus 72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdt-V~~g~~la~i~~g 149 (457)
T KOG0559|consen 72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDT-VTPGQKLAKISPG 149 (457)
T ss_pred eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCc-ccCCceeEEecCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999 9999999999764
No 16
>PRK06748 hypothetical protein; Validated
Probab=99.71 E-value=9.8e-17 Score=114.16 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=60.6
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEec-cCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQT-DKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE 120 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet-~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~ 120 (219)
.|+|.+|+|++||.|++||+|++||| ||+..+|+||.+|+|.++++++||. |.+|++|+.|.+
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~-V~vG~~la~I~~ 75 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQA-IADQKLLITVRD 75 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEEC
Confidence 39999999999999999999999999 9999999999999999999999999 999999999953
No 17
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.70 E-value=1.6e-16 Score=150.08 Aligned_cols=82 Identities=37% Similarity=0.598 Sum_probs=77.5
Q ss_pred cceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439 41 DAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE 120 (219)
Q Consensus 41 ~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~ 120 (219)
.+.++|+||+||++|++|+|.+|+|++||.|++||.||+|||||++++|+||.+|+|.++++++|+. |.+|++|+.|+.
T Consensus 133 ~~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~-v~vG~~l~~i~~ 211 (590)
T TIGR02927 133 GAATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDT-VDVGAEIAKIGD 211 (590)
T ss_pred CCceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCE-ecCCCEEEEEec
Confidence 4458999999999999999999999999999999999999999999999999999999999999999 999999999975
Q ss_pred cCc
Q psy10439 121 EGE 123 (219)
Q Consensus 121 ~~~ 123 (219)
.++
T Consensus 212 ~~~ 214 (590)
T TIGR02927 212 AGA 214 (590)
T ss_pred CCC
Confidence 443
No 18
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.68 E-value=5.3e-16 Score=142.62 Aligned_cols=84 Identities=63% Similarity=0.906 Sum_probs=77.6
Q ss_pred ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC-eeeecCcEEEEEee
Q psy10439 42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT-TDVKVGTLIAVMVE 120 (219)
Q Consensus 42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd-~~V~~G~~l~~i~~ 120 (219)
|.++|+||++|+++++|+|.+|+|++||.|++||.|++|||||+++++.||.+|+|.++++++|+ . |++|++|+.|++
T Consensus 1 M~~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~-V~vG~~i~~i~~ 79 (464)
T PRK11892 1 MAIEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEG-VKVNTPIAVLLE 79 (464)
T ss_pred CCcceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcE-eCCCCEEEEEcc
Confidence 45689999999999999999999999999999999999999999999999999999999999996 6 999999999976
Q ss_pred cCcccc
Q psy10439 121 EGEDWQ 126 (219)
Q Consensus 121 ~~~~~~ 126 (219)
++++..
T Consensus 80 ~~~~~~ 85 (464)
T PRK11892 80 EGESAS 85 (464)
T ss_pred CCCccc
Confidence 554433
No 19
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.66 E-value=7.4e-16 Score=144.53 Aligned_cols=78 Identities=27% Similarity=0.464 Sum_probs=74.9
Q ss_pred eeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 43 QQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 43 ~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
.+.|+||++|+ |++|+|++|+|++||.|++||.|++||+||+.++|+||.+|+|.++++++|+. |.+|++|+.|...+
T Consensus 116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~ 193 (546)
T TIGR01348 116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDS-VPTGDLILTLSVAG 193 (546)
T ss_pred ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCE-ecCCCEEEEEecCC
Confidence 37999999999 99999999999999999999999999999999999999999999999999999 99999999997544
No 20
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=99.63 E-value=4.1e-15 Score=135.35 Aligned_cols=81 Identities=49% Similarity=0.742 Sum_probs=76.8
Q ss_pred ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
|.+.++||++|+++++|+|.+|+|++||.|++||.|++||+||+.++++||.+|+|.++++++|+. |.+|++|+.+.+.
T Consensus 1 M~~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~-v~~G~~l~~i~~~ 79 (411)
T PRK11856 1 MMFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDV-VPVGSVIAVIEEE 79 (411)
T ss_pred CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCE-eCCCCEEEEEecC
Confidence 456899999999999999999999999999999999999999999999999999999999999999 9999999999765
Q ss_pred Cc
Q psy10439 122 GE 123 (219)
Q Consensus 122 ~~ 123 (219)
++
T Consensus 80 ~~ 81 (411)
T PRK11856 80 GE 81 (411)
T ss_pred CC
Confidence 44
No 21
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.63 E-value=2.3e-15 Score=104.53 Aligned_cols=61 Identities=26% Similarity=0.459 Sum_probs=59.6
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
.|+|.+|+|++||.|++||.|+.+|+||+.++|+||.+|+|.++++++|+. |..|++|+.|
T Consensus 10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~-V~~G~~l~~i 70 (71)
T PRK05889 10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDV-IQAGDLIAVI 70 (71)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCE-ECCCCEEEEE
Confidence 499999999999999999999999999999999999999999999999999 9999999987
No 22
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=99.62 E-value=4.9e-15 Score=134.85 Aligned_cols=76 Identities=29% Similarity=0.514 Sum_probs=72.8
Q ss_pred EecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 46 IKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 46 i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
|+||+||++|++|+|++|+|++||.|++||.|+++|+||+.++++|+.+|+|.++++++|+. |.+|++|+.|+..+
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~ 76 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDI-VKVGETLLKIMVED 76 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEeccC
Confidence 57999999999999999999999999999999999999999999999999999999999999 99999999996544
No 23
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.61 E-value=4.9e-15 Score=139.25 Aligned_cols=79 Identities=32% Similarity=0.548 Sum_probs=75.4
Q ss_pred ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
+.++|+||+||+ |++|+|++|+|++||.|++||.|++||+||+.++|+||++|+|.++++++|+. |.+|++|+.+.+.
T Consensus 118 ~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~-v~~G~~l~~i~~~ 195 (547)
T PRK11855 118 GVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDK-VSVGSLLVVIEVA 195 (547)
T ss_pred CceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCE-ecCCCEEEEEecC
Confidence 347999999999 99999999999999999999999999999999999999999999999999999 9999999999765
Q ss_pred C
Q psy10439 122 G 122 (219)
Q Consensus 122 ~ 122 (219)
+
T Consensus 196 ~ 196 (547)
T PRK11855 196 A 196 (547)
T ss_pred C
Confidence 3
No 24
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.59 E-value=1.3e-14 Score=100.83 Aligned_cols=72 Identities=43% Similarity=0.670 Sum_probs=69.0
Q ss_pred EecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 46 IKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 46 i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
|.+|+++..+.+|++.+|++++||.|++||.|+.+|++|+..+++||.+|+|.+++++.|+. +..|+.|+.+
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~-v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK-VEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEC
Confidence 67899999999999999999999999999999999999999999999999999999999999 9999999864
No 25
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.58 E-value=5.9e-15 Score=115.56 Aligned_cols=62 Identities=31% Similarity=0.444 Sum_probs=60.3
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
-|++.+.+|++||+|++||.||+||+||+.++|.||.+|+|.+|++++|+. |..|++|+.|.
T Consensus 78 ~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~-Ve~G~~L~~I~ 139 (140)
T COG0511 78 VGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDP-VEYGDPLAVIE 139 (140)
T ss_pred ceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCc-cCCCCEEEEec
Confidence 499999999999999999999999999999999999999999999999999 99999999885
No 26
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=99.57 E-value=3.2e-14 Score=130.24 Aligned_cols=77 Identities=69% Similarity=1.023 Sum_probs=73.4
Q ss_pred EecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 46 IKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 46 i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
|+||++|+++++|+|.+|+|++||.|++||.||+||+||+.+++.||.+|++.++++++|+..|.+|++|++|++.+
T Consensus 2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 78999999999999999999999999999999999999999999999999999999999986699999999996543
No 27
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.55 E-value=3.4e-14 Score=98.21 Aligned_cols=62 Identities=27% Similarity=0.377 Sum_probs=60.0
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
.|+|.+|++++||+|++||+|+.+|+||+.+++.++.+|+|.+++++.|+. |..|++|+.|+
T Consensus 9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~-V~~g~~l~~ie 70 (70)
T PRK08225 9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDF-VNEGDVLLEIE 70 (70)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCE-ECCCCEEEEEC
Confidence 399999999999999999999999999999999999999999999999999 99999999874
No 28
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.50 E-value=3.4e-14 Score=99.43 Aligned_cols=57 Identities=49% Similarity=0.708 Sum_probs=54.7
Q ss_pred eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
.+.+|.+|..++++.+.+|++++||.|++||+||++|+||+.++|.||.+|+|++++
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~ 58 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEIL 58 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEES
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEE
Confidence 578999999999999999999999999999999999999999999999999999874
No 29
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=99.48 E-value=4.8e-14 Score=127.90 Aligned_cols=58 Identities=60% Similarity=0.896 Sum_probs=56.2
Q ss_pred eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
..+.||++|+++++|+|.+|++++||+|++||+|++|||||+++||+||.+|+|.+|+
T Consensus 3 ~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~ 60 (404)
T COG0508 3 IEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL 60 (404)
T ss_pred ceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEe
Confidence 4689999999999999999999999999999999999999999999999999999985
No 30
>KOG0558|consensus
Probab=99.48 E-value=4.3e-14 Score=122.82 Aligned_cols=85 Identities=29% Similarity=0.470 Sum_probs=78.6
Q ss_pred ccCCcceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEE
Q psy10439 37 TNILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIA 116 (219)
Q Consensus 37 ~~~~~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~ 116 (219)
+.+......|++-|+|+++.|.++.+|+|++||+|++-|.||++++||+++.|.+.++|+|++++...+|. ..+|++|.
T Consensus 58 t~s~~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddi-a~VGk~Lv 136 (474)
T KOG0558|consen 58 TDSNSGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDI-AKVGKPLV 136 (474)
T ss_pred cccccceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhh-hHhCccee
Confidence 34444578999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEeecC
Q psy10439 117 VMVEEG 122 (219)
Q Consensus 117 ~i~~~~ 122 (219)
.++..+
T Consensus 137 d~eve~ 142 (474)
T KOG0558|consen 137 DLEVED 142 (474)
T ss_pred eeeecc
Confidence 886443
No 31
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.47 E-value=3.2e-13 Score=104.11 Aligned_cols=62 Identities=24% Similarity=0.280 Sum_probs=59.9
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
..|+|.+|++++||.|++||.|+++|+||+..+|.||.+|+|.+++++.||. |..|+.|+.|
T Consensus 68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I 129 (130)
T PRK06549 68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQV-VNPGDGLITI 129 (130)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEe
Confidence 3499999999999999999999999999999999999999999999999999 9999999986
No 32
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.43 E-value=6.8e-13 Score=103.90 Aligned_cols=54 Identities=26% Similarity=0.411 Sum_probs=48.3
Q ss_pred CceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 160 PGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 160 ~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
....+..|+.|+ +.+.+|++||+|++||+||+||+||++|+|.||.+|+|.+|+
T Consensus 69 ~~~~V~SPm~Gt------v~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Il 122 (140)
T COG0511 69 GGTQVTSPMVGT------VYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEIL 122 (140)
T ss_pred cCceEecCcceE------EEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEE
Confidence 356788887765 556999999999999999999999999999999999999985
No 33
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.43 E-value=7.4e-13 Score=104.95 Aligned_cols=62 Identities=29% Similarity=0.438 Sum_probs=59.9
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
..|+|.+|+|++||.|++||.|+++|+||+..+|.||.+|+|.+++++.|+. |..|+.|+.|
T Consensus 91 ~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~Gq~L~~I 152 (153)
T PRK05641 91 MPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDT-VDTGQPLIEL 152 (153)
T ss_pred CCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCE-ECCCCEEEEe
Confidence 3499999999999999999999999999999999999999999999999999 9999999986
No 34
>PRK07051 hypothetical protein; Validated
Probab=99.42 E-value=1.8e-12 Score=92.03 Aligned_cols=70 Identities=34% Similarity=0.458 Sum_probs=64.1
Q ss_pred eeEEecCCCCCCCceEEEEE-------EEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEE
Q psy10439 43 QQEIKMPSLSPTMTEGTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLI 115 (219)
Q Consensus 43 ~~~i~~P~~~~~~~~g~i~~-------w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l 115 (219)
...|..|.. |++.+ |++++||.|++||.++.+|+||+.++|+||.+|+|.++++++|+. |..|++|
T Consensus 3 ~~~~~ap~~------g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~-V~~G~~l 75 (80)
T PRK07051 3 QHEIVSPLP------GTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEP-VEAGQVL 75 (80)
T ss_pred ccEEeCCCc------eEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCE-ECCCCEE
Confidence 345666754 78888 999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEe
Q psy10439 116 AVMV 119 (219)
Q Consensus 116 ~~i~ 119 (219)
+.++
T Consensus 76 ~~i~ 79 (80)
T PRK07051 76 ARIE 79 (80)
T ss_pred EEEe
Confidence 9984
No 35
>KOG0557|consensus
Probab=99.39 E-value=4.4e-13 Score=120.58 Aligned_cols=61 Identities=56% Similarity=0.895 Sum_probs=58.9
Q ss_pred CCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 159 VPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 159 ~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
+.+..+.||.|+++|++|.|+.|.+++||++.+||+||+|||||+++++++..+|++.+|+
T Consensus 36 p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKIL 96 (470)
T KOG0557|consen 36 PAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKIL 96 (470)
T ss_pred CcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeee
Confidence 4578999999999999999999999999999999999999999999999999999999985
No 36
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.38 E-value=4e-12 Score=86.00 Aligned_cols=62 Identities=35% Similarity=0.523 Sum_probs=59.2
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
..|++.+|++++||.|++||.|+.++++|...+|+||.+|+|.+++++.|+. |..|++|+.|
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQ-VEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence 4599999999999999999999999999999999999999999999999999 9999999864
No 37
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.34 E-value=3.7e-12 Score=101.44 Aligned_cols=60 Identities=28% Similarity=0.486 Sum_probs=58.1
Q ss_pred EEEEE-------EEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 58 GTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 58 g~i~~-------w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
|++.+ |+|++||.|++||.||.||+||+..+|+|+.+|+|.+++++.|+. |..|++|+.|
T Consensus 89 G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~-V~~Gq~L~~i 155 (156)
T TIGR00531 89 GTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQP-VEYGQPLIVI 155 (156)
T ss_pred EEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCE-ECCCCEEEEE
Confidence 88876 999999999999999999999999999999999999999999999 9999999987
No 38
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.34 E-value=4e-12 Score=107.61 Aligned_cols=62 Identities=31% Similarity=0.489 Sum_probs=58.8
Q ss_pred eEEEEE-------EEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439 57 EGTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 57 ~g~i~~-------w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
.|++.+ |+|++||.|++||.|++||+||+..+|+|+.+|+|.+++++.|+. |..|++|+.|+
T Consensus 205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~-V~vGqpL~~IE 273 (274)
T PLN02983 205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKP-VSVDTPLFVIE 273 (274)
T ss_pred CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCE-eCCCCEEEEec
Confidence 377777 999999999999999999999999999999999999999999999 99999999884
No 39
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.33 E-value=2e-11 Score=94.17 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=47.4
Q ss_pred CceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 160 PGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 160 ~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
....+..| -.|.|.+|++++||.|++||+|+.+|+||+.++|.||.+|+|.+|+
T Consensus 60 ~~~~v~Ap------~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~ 113 (130)
T PRK06549 60 GADAMPSP------MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIH 113 (130)
T ss_pred CCcEEECC------CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEE
Confidence 34456666 3478999999999999999999999999999999999999999873
No 40
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.32 E-value=3e-12 Score=113.19 Aligned_cols=58 Identities=38% Similarity=0.625 Sum_probs=55.7
Q ss_pred eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
..+.+|++|+++++|+|.+|+|++||.|++||+|+++|+||++++|+||.+|+|.+|+
T Consensus 3 ~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~ 60 (371)
T PRK14875 3 TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQV 60 (371)
T ss_pred eEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEE
Confidence 4789999999999999999999999999999999999999999999999999999874
No 41
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.31 E-value=3.3e-12 Score=116.95 Aligned_cols=58 Identities=26% Similarity=0.564 Sum_probs=56.3
Q ss_pred eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
..+.||++|+++++|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.+|+
T Consensus 92 ~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~il 149 (463)
T PLN02226 92 VEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFL 149 (463)
T ss_pred eEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEE
Confidence 5899999999999999999999999999999999999999999999999999999974
No 42
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.30 E-value=4.8e-11 Score=80.64 Aligned_cols=73 Identities=62% Similarity=0.935 Sum_probs=69.7
Q ss_pred EEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 45 ~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
++.+|+++....+|+|.+|++..|+.+..|+.|+.++++|+...+.++.+|++.+.++..|+. +..|++|+.+
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~-v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDT-VPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCE-eCCCCEEEEC
Confidence 478999999999999999999999999999999999999999999999999999999999999 9999999864
No 43
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.29 E-value=1.1e-11 Score=98.67 Aligned_cols=60 Identities=30% Similarity=0.542 Sum_probs=57.8
Q ss_pred EEEEE-------EEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 58 GTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 58 g~i~~-------w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
|++.. |+|++||.|++||+||.||+||+..+|+|+.+|+|.+++++.|+. |..|++|+.|
T Consensus 88 G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~-V~~Gq~L~~i 154 (155)
T PRK06302 88 GTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQP-VEFGQPLFVI 154 (155)
T ss_pred EEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCE-eCCCCEEEEe
Confidence 77776 999999999999999999999999999999999999999999999 9999999987
No 44
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.29 E-value=5.3e-12 Score=114.64 Aligned_cols=59 Identities=36% Similarity=0.735 Sum_probs=56.5
Q ss_pred ceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 161 GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 161 ~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
-..+.+|++|.++++|+|.+|+|++||.|++||+||+||+||+.++|+||.+|+|.+|+
T Consensus 44 i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~ 102 (418)
T PTZ00144 44 IKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIF 102 (418)
T ss_pred ceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEE
Confidence 35899999999999999999999999999999999999999999999999999999874
No 45
>PRK06748 hypothetical protein; Validated
Probab=99.28 E-value=7e-12 Score=89.27 Aligned_cols=45 Identities=22% Similarity=0.277 Sum_probs=42.5
Q ss_pred cceeeeEeecCCCeecCCCeEEEEee-cceeeeeeCCCCeEEEEcC
Q psy10439 175 EGTIVKWLKKEGDAVVPGDVLCEIQT-DKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~-~K~~~~i~a~~~G~v~~i~ 219 (219)
.|+|.+|++++||.|++||+|+++|| ||++++|+||.+|+|.+|+
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~ 57 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLE 57 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEE
Confidence 37899999999999999999999999 9999999999999999874
No 46
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.25 E-value=2.4e-11 Score=114.66 Aligned_cols=62 Identities=23% Similarity=0.381 Sum_probs=60.6
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
.|+|++|+|++||.|++||+|++||+||+..+|+||.+|+|.++++++|+. |..|++|+.|+
T Consensus 533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~-V~~G~~L~~I~ 594 (596)
T PRK14042 533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDK-VTPGQVLIRVE 594 (596)
T ss_pred ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCE-ECCCCEEEEEe
Confidence 599999999999999999999999999999999999999999999999999 99999999985
No 47
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.21 E-value=3.9e-10 Score=89.42 Aligned_cols=53 Identities=26% Similarity=0.456 Sum_probs=47.1
Q ss_pred ceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 161 GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 161 ~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
...+..|. .|+|.+|++++||.|++||.|+++|+||+.++|.||.+|+|.+|+
T Consensus 84 ~~~v~ap~------~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~ 136 (153)
T PRK05641 84 ENVVTAPM------PGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKIL 136 (153)
T ss_pred CCEEECCC------CeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEE
Confidence 44566663 467999999999999999999999999999999999999999873
No 48
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.21 E-value=2.4e-11 Score=110.51 Aligned_cols=57 Identities=46% Similarity=0.736 Sum_probs=55.1
Q ss_pred eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
.+.+|++|.++++|+|.+|++++||.|++||+||++|+||+.++|+||++|+|.+|+
T Consensus 4 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~ 60 (407)
T PRK05704 4 EIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEIL 60 (407)
T ss_pred eEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEE
Confidence 688999999999999999999999999999999999999999999999999999874
No 49
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.14 E-value=3.5e-10 Score=90.13 Aligned_cols=59 Identities=24% Similarity=0.391 Sum_probs=51.4
Q ss_pred ceeeccCCCCCCcccc-eeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 161 GQIINMPSLSPTMTEG-TIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 161 ~~~i~~P~lg~~~~~~-~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
...+..|..|.++... .-..|++++||.|++||+||.+|+||++++|.|+.+|+|.+|+
T Consensus 80 ~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~ 139 (156)
T TIGR00531 80 GHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEIL 139 (156)
T ss_pred CCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEE
Confidence 4578999999887533 3345999999999999999999999999999999999999874
No 50
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.14 E-value=1.2e-10 Score=92.66 Aligned_cols=59 Identities=24% Similarity=0.450 Sum_probs=52.0
Q ss_pred ceeeccCCCCCCcccce-eeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 161 GQIINMPSLSPTMTEGT-IVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 161 ~~~i~~P~lg~~~~~~~-i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
...+..|.+|.++.... -..|++++||.|++||+||.+|+||++++|.|+.+|+|.+|+
T Consensus 79 ~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~ 138 (155)
T PRK06302 79 GHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEIL 138 (155)
T ss_pred CCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEE
Confidence 45799999999875433 345999999999999999999999999999999999999874
No 51
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.14 E-value=1.4e-10 Score=117.46 Aligned_cols=63 Identities=29% Similarity=0.390 Sum_probs=60.6
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
..|+|.+|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+. |..|++|+.|+
T Consensus 1139 ~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~-V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1139 YAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDM-VDAGDIVAVLE 1201 (1201)
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCE-eCCCCEEEEeC
Confidence 3599999999999999999999999999999999999999999999999999 99999999873
No 52
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=99.13 E-value=7.6e-11 Score=110.03 Aligned_cols=61 Identities=67% Similarity=1.065 Sum_probs=58.0
Q ss_pred CCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 159 VPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 159 ~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
+.+..+.||.++.++++|+|.+|++++||.|++||+||++|+||+++|++|+.+|+|.+|+
T Consensus 110 ~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~ 170 (539)
T PLN02744 110 PPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 170 (539)
T ss_pred CCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEE
Confidence 3477899999999999999999999999999999999999999999999999999999874
No 53
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.12 E-value=2.2e-10 Score=79.43 Aligned_cols=55 Identities=45% Similarity=0.750 Sum_probs=51.8
Q ss_pred eccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 164 i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
+.+|+++..+.++.+.+|++++|+.|++||+|+.+|+||+..+|.||.+|+|.++
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~ 56 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKV 56 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEE
Confidence 5678888888899999999999999999999999999999999999999999986
No 54
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.12 E-value=1.4e-10 Score=80.30 Aligned_cols=44 Identities=23% Similarity=0.397 Sum_probs=42.2
Q ss_pred cceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
.|+|.+|++++||.|++||+|+.+|+||+..+|.||.+|+|.++
T Consensus 10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i 53 (71)
T PRK05889 10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKV 53 (71)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEE
Confidence 37899999999999999999999999999999999999999986
No 55
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.11 E-value=3.6e-10 Score=95.82 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=49.2
Q ss_pred ceeeccCCCCCCccccee-eeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 161 GQIINMPSLSPTMTEGTI-VKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 161 ~~~i~~P~lg~~~~~~~i-~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
+..+..|..|.++..... ..|+|++||.|++||+|++||+||+.++|.|+.+|+|.+|+
T Consensus 197 ~~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIl 256 (274)
T PLN02983 197 HPPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEIL 256 (274)
T ss_pred CCeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEe
Confidence 457788877766542111 25999999999999999999999999999999999999874
No 56
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.11 E-value=2.7e-10 Score=107.84 Aligned_cols=62 Identities=31% Similarity=0.440 Sum_probs=60.0
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
..|+|.+|+|++||.|++||+|+.||+||+..+|.||.+|+|.++++++|+. |..|++|+.|
T Consensus 531 ~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I 592 (593)
T PRK14040 531 LAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDA-VAVGDTLLTL 592 (593)
T ss_pred ccEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEe
Confidence 3599999999999999999999999999999999999999999999999999 9999999987
No 57
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.10 E-value=2e-10 Score=108.63 Aligned_cols=59 Identities=32% Similarity=0.469 Sum_probs=56.6
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEE
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLI 115 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l 115 (219)
..|+|.+|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++|+. |.+|++|
T Consensus 524 ~~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~-V~~G~~l 582 (582)
T TIGR01108 524 IAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDA-VSVGQVL 582 (582)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCCC
Confidence 3599999999999999999999999999999999999999999999999999 9999864
No 58
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.07 E-value=3.9e-10 Score=113.46 Aligned_cols=62 Identities=23% Similarity=0.409 Sum_probs=60.1
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
..|+|.+|+|++||.|++||+|++||+||+..+|.||.+|+|.++++++|+. |..|++|+.|
T Consensus 1081 ~~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i 1142 (1143)
T TIGR01235 1081 MPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQ-IDAKDLLLVL 1142 (1143)
T ss_pred CCcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEe
Confidence 4599999999999999999999999999999999999999999999999999 9999999987
No 59
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=99.02 E-value=9.7e-10 Score=104.22 Aligned_cols=63 Identities=30% Similarity=0.430 Sum_probs=60.7
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
..|+|.+|+|++||.|++||+|+.||+||+..+|+||.+|+|.+++++.|+. |..|++|+.|.
T Consensus 529 ~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i~ 591 (592)
T PRK09282 529 MPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDR-VNPGDVLMEIE 591 (592)
T ss_pred CcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEec
Confidence 3599999999999999999999999999999999999999999999999999 99999999884
No 60
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.96 E-value=1.4e-09 Score=100.32 Aligned_cols=63 Identities=32% Similarity=0.506 Sum_probs=60.7
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
..|+|+.+.|++|+.|.+||+|+.+|+|||++.|+||.+|+|+++.+.+|+. |..|++|+.++
T Consensus 582 MpG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~-V~~g~vLve~~ 644 (645)
T COG4770 582 MPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQ-VAVGTVLVEFE 644 (645)
T ss_pred CCceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCc-cccCceEEEec
Confidence 3599999999999999999999999999999999999999999999999999 99999999875
No 61
>KOG0559|consensus
Probab=98.94 E-value=2.8e-10 Score=99.67 Aligned_cols=59 Identities=31% Similarity=0.651 Sum_probs=56.3
Q ss_pred ceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 161 GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 161 ~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
.+++..|..++++++|.+.+|++++||.|++++.||+|||||.+++|+||.+|+|.+++
T Consensus 72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~l 130 (457)
T KOG0559|consen 72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELL 130 (457)
T ss_pred eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEe
Confidence 56788999999999999999999999999999999999999999999999999999874
No 62
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.93 E-value=2.9e-09 Score=107.56 Aligned_cols=63 Identities=30% Similarity=0.482 Sum_probs=60.7
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
..|+|.+|+|++||.|++||+|+.+|+||+..+|.||.+|+|.++++++|+. |..|+.|+.|+
T Consensus 1083 m~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~-V~~g~~l~~i~ 1145 (1146)
T PRK12999 1083 MPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQ-VEAGDLLVELE 1145 (1146)
T ss_pred ceEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEc
Confidence 3599999999999999999999999999999999999999999999999999 99999999884
No 63
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=98.88 E-value=2.7e-09 Score=98.46 Aligned_cols=57 Identities=65% Similarity=0.975 Sum_probs=54.9
Q ss_pred eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
.+.+|.++++++++++.+|++++||.|++||.|+++|+||++++++|+.+|+|.+|+
T Consensus 4 ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~ 60 (464)
T PRK11892 4 EILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKIL 60 (464)
T ss_pred ceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEE
Confidence 688999999999999999999999999999999999999999999999999999874
No 64
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.88 E-value=4.1e-09 Score=72.67 Aligned_cols=44 Identities=30% Similarity=0.418 Sum_probs=42.1
Q ss_pred cceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
.|.+.+|++++||.|++||+|+.+|+||+..++.|+.+|+|.++
T Consensus 9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~ 52 (70)
T PRK08225 9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKI 52 (70)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEE
Confidence 37899999999999999999999999999999999999999886
No 65
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=98.85 E-value=6e-09 Score=94.98 Aligned_cols=57 Identities=46% Similarity=0.724 Sum_probs=54.8
Q ss_pred eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
.+.+|.++.++.+|+|.+|++++||.|++||+|+++|+||+..++.||++|+|.+++
T Consensus 4 ~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~ 60 (411)
T PRK11856 4 EFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLL 60 (411)
T ss_pred eEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEe
Confidence 588999999999999999999999999999999999999999999999999999863
No 66
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.82 E-value=7.2e-09 Score=98.82 Aligned_cols=62 Identities=29% Similarity=0.462 Sum_probs=59.8
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
.|.|+++.|+.||+|++||+|+.+|+|||+..|.||.+|+|.+++|..||. |..|+.|..++
T Consensus 1087 pG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~-i~~gDLLi~~~ 1148 (1149)
T COG1038 1087 PGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQ-IDGGDLLVVVE 1148 (1149)
T ss_pred CCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCc-cccCceEEEcc
Confidence 489999999999999999999999999999999999999999999999999 99999998764
No 67
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=98.77 E-value=9.5e-08 Score=90.55 Aligned_cols=44 Identities=27% Similarity=0.445 Sum_probs=42.3
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
|.|.+|+|++||.|++||+|+++|+||+.++|.||.+|+|.+|+
T Consensus 534 G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~ 577 (596)
T PRK14042 534 GSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEIL 577 (596)
T ss_pred eEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEE
Confidence 78999999999999999999999999999999999999999874
No 68
>KOG0558|consensus
Probab=98.75 E-value=3.9e-09 Score=92.26 Aligned_cols=62 Identities=31% Similarity=0.507 Sum_probs=58.3
Q ss_pred CCCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 158 SVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 158 ~~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
......+++.++|+++.+.++.+|+|++||.|+.=|.||+|+.||++++|.+.++|+|++|+
T Consensus 61 ~~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~ 122 (474)
T KOG0558|consen 61 NSGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIY 122 (474)
T ss_pred ccceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEe
Confidence 34467899999999999999999999999999999999999999999999999999999984
No 69
>PRK07051 hypothetical protein; Validated
Probab=98.68 E-value=3e-08 Score=70.23 Aligned_cols=57 Identities=25% Similarity=0.230 Sum_probs=46.4
Q ss_pred eeeccCCCCCCcc-cceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 162 QIINMPSLSPTMT-EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 162 ~~i~~P~lg~~~~-~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
+++.+|..|..+. ...-..|++++||.|++||.|+.+|+||+..+|.||.+|+|.++
T Consensus 4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i 61 (80)
T PRK07051 4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEF 61 (80)
T ss_pred cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEE
Confidence 3566776665543 12223599999999999999999999999999999999999886
No 70
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.67 E-value=6.2e-08 Score=91.84 Aligned_cols=44 Identities=32% Similarity=0.464 Sum_probs=42.2
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
|.|.+|+|++||.|++||+|+++|+||+.++|.||.+|+|.+|+
T Consensus 526 G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~ 569 (582)
T TIGR01108 526 GSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREIL 569 (582)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEE
Confidence 77999999999999999999999999999999999999999873
No 71
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=98.61 E-value=1.2e-07 Score=63.84 Aligned_cols=45 Identities=33% Similarity=0.448 Sum_probs=42.0
Q ss_pred ccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
-.|.+.+|++++|+.|++||.|+.++++|...+|.||.+|+|.++
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~ 50 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEI 50 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEE
Confidence 347888999999999999999999999999999999999999875
No 72
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.60 E-value=1.5e-07 Score=95.09 Aligned_cols=44 Identities=25% Similarity=0.437 Sum_probs=42.4
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
|.|.+|+|++||.|++||+|+++|+||+.++|.||.+|+|.+|+
T Consensus 1083 G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~ 1126 (1143)
T TIGR01235 1083 GVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVL 1126 (1143)
T ss_pred cEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEE
Confidence 78999999999999999999999999999999999999999874
No 73
>KOG0369|consensus
Probab=98.52 E-value=1.7e-07 Score=88.27 Aligned_cols=62 Identities=29% Similarity=0.399 Sum_probs=59.9
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
.|+|+++.|++|++|++||+|+.+.+|||++-|.||.+|+++++++..|+. +..|+.+++++
T Consensus 1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~-~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTK-VEGGDLIVELE 1175 (1176)
T ss_pred CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCc-ccccceEEEcc
Confidence 599999999999999999999999999999999999999999999999999 99999998875
No 74
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.47 E-value=2.9e-07 Score=67.38 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=51.2
Q ss_pred eeEEecCCCCCCCceEEEEE-EEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCe
Q psy10439 43 QQEIKMPSLSPTMTEGTIVK-WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 107 (219)
Q Consensus 43 ~~~i~~P~~~~~~~~g~i~~-w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~ 107 (219)
...+-|-+.+..+ -|.|.. |++++|+.|++||.|+.||++|+..++.||.+|+|.+++.+..+.
T Consensus 15 ~~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 15 IATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred EEEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 3445454444332 377888 566669999999999999999999999999999999998877765
No 75
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.44 E-value=5.8e-07 Score=85.39 Aligned_cols=44 Identities=30% Similarity=0.434 Sum_probs=42.1
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
|.|.+|+|++||.|++||+|+.+|+||+.++|.||.+|+|.+|+
T Consensus 533 G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~ 576 (593)
T PRK14040 533 GNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIA 576 (593)
T ss_pred EEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEE
Confidence 67999999999999999999999999999999999999999873
No 76
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.43 E-value=5.9e-07 Score=65.76 Aligned_cols=43 Identities=26% Similarity=0.338 Sum_probs=39.6
Q ss_pred ceeee-EeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVK-WLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~-~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
|.|.. |++++|+.|++||.|+.+|++|+..+|.||.+|+|.++
T Consensus 29 G~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~ 72 (96)
T cd06848 29 GDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEV 72 (96)
T ss_pred CCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEE
Confidence 66777 77788999999999999999999999999999999886
No 77
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.40 E-value=3.7e-07 Score=92.98 Aligned_cols=45 Identities=31% Similarity=0.381 Sum_probs=42.8
Q ss_pred cceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
.|.|.+|+|++||.|++||+|++||+||+.++|.||.+|+|++|+
T Consensus 1140 ~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~ 1184 (1201)
T TIGR02712 1140 AGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKIL 1184 (1201)
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEE
Confidence 378999999999999999999999999999999999999999874
No 78
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.34 E-value=3e-06 Score=56.69 Aligned_cols=55 Identities=60% Similarity=0.949 Sum_probs=51.1
Q ss_pred eccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 164 i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
+.+|.++.....+.+..|++..|+.+..|+.++.++++|+...+.++.+|++.+.
T Consensus 3 ~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~ 57 (74)
T cd06849 3 IKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKI 57 (74)
T ss_pred EECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEE
Confidence 5678888888899999999999999999999999999999999999999998754
No 79
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=98.27 E-value=1.4e-06 Score=65.50 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=36.8
Q ss_pred ceeeeEee-cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLK-KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
|.|.-+.. ++|+.|++||+++.||++|+..+|.||.+|+|.++
T Consensus 30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~v 73 (110)
T TIGR03077 30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEV 73 (110)
T ss_pred CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEE
Confidence 34444333 67999999999999999999999999999999987
No 80
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.27 E-value=5.3e-06 Score=79.76 Aligned_cols=44 Identities=32% Similarity=0.472 Sum_probs=42.3
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
|.|.++.|+.||+|++||+|+++|+|||..-|.||.+|+|.+++
T Consensus 1088 G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~ 1131 (1149)
T COG1038 1088 GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVL 1131 (1149)
T ss_pred CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEE
Confidence 88999999999999999999999999999999999999999873
No 81
>KOG0238|consensus
Probab=98.26 E-value=8.5e-07 Score=81.33 Aligned_cols=61 Identities=26% Similarity=0.347 Sum_probs=58.7
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
-|.|.+++|++||.|++||.|+.+++|||...++||.+|++..+.++.|+. |..|.+|+++
T Consensus 609 pG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~-v~~g~vlv~~ 669 (670)
T KOG0238|consen 609 PGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGAT-VGDGAVLVEF 669 (670)
T ss_pred CCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcc-cCCCceEEEe
Confidence 489999999999999999999999999999999999999999999999999 9999999876
No 82
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=98.25 E-value=3.2e-06 Score=75.28 Aligned_cols=36 Identities=8% Similarity=0.084 Sum_probs=32.4
Q ss_pred eeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439 87 MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE 123 (219)
Q Consensus 87 ~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~ 123 (219)
..|+||++|+|.++.++.|+. |..|++|+.|.+.+.
T Consensus 209 ~~I~AP~dG~V~~~~~~~G~~-V~~g~~l~~I~~~~~ 244 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVGEF-AAPMQPIFTLIDTDH 244 (346)
T ss_pred CEEECCCCcEEEeeecCCCCC-cCCCCeEEEEecCCC
Confidence 358999999999999999999 999999999976653
No 83
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.25 E-value=1.8e-06 Score=80.11 Aligned_cols=43 Identities=33% Similarity=0.543 Sum_probs=41.7
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
|.|..+.|++|+.|.+||+|+++|+|||.+.|.||.+|+|.+|
T Consensus 584 G~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v 626 (645)
T COG4770 584 GTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKL 626 (645)
T ss_pred ceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEE
Confidence 6799999999999999999999999999999999999999987
No 84
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=98.24 E-value=6.3e-06 Score=75.23 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=59.8
Q ss_pred ceEEEEEEE-eCCCCeEcCCCeEEEEecc------------------------------------------------Cce
Q psy10439 56 TEGTIVKWL-KKEGDAVAPGDVLCEIQTD------------------------------------------------KAV 86 (219)
Q Consensus 56 ~~g~i~~w~-v~~Gd~V~~gd~l~~iet~------------------------------------------------K~~ 86 (219)
..|.|.+++ +.+||.|++||+|++|++. ...
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~ 209 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR 209 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 359999998 9999999999999999831 013
Q ss_pred eeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCcccc
Q psy10439 87 MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQ 126 (219)
Q Consensus 87 ~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~~~~ 126 (219)
..|+||++|+|.++.+..|+. |..|++|+.|.+...-+.
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~~-V~~g~~L~~I~d~~~l~v 248 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQGMDPVWV 248 (409)
T ss_pred EEEECCCCeEEEEEECCCCCE-ECCCCeEEEEEcCCeEEE
Confidence 579999999999999999999 999999999987664433
No 85
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=98.21 E-value=2.2e-06 Score=64.42 Aligned_cols=49 Identities=16% Similarity=0.294 Sum_probs=42.0
Q ss_pred EEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC
Q psy10439 58 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 106 (219)
Q Consensus 58 g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd 106 (219)
|.|..+.. ++|+.|++||.++.||++|+..+|.||.+|+|.+++-+..+
T Consensus 30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~ 79 (110)
T TIGR03077 30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALED 79 (110)
T ss_pred CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhh
Confidence 56666655 66999999999999999999999999999999999755544
No 86
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.20 E-value=2.4e-06 Score=86.80 Aligned_cols=44 Identities=34% Similarity=0.534 Sum_probs=42.3
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
|.|.+|++++||.|++||+|+.+|+||+.++|.||.+|+|++|+
T Consensus 1085 G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~ 1128 (1146)
T PRK12999 1085 GSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVL 1128 (1146)
T ss_pred EEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEE
Confidence 88999999999999999999999999999999999999999873
No 87
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.19 E-value=9.4e-06 Score=77.29 Aligned_cols=45 Identities=33% Similarity=0.462 Sum_probs=42.5
Q ss_pred cceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
.|.|.+|++++||.|++||+|+.+|+||+.++|.||.+|+|.+++
T Consensus 530 ~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~ 574 (592)
T PRK09282 530 PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEIL 574 (592)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEE
Confidence 378999999999999999999999999999999999999998863
No 88
>PRK00624 glycine cleavage system protein H; Provisional
Probab=98.18 E-value=4.5e-06 Score=63.05 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=36.9
Q ss_pred ceeeeEee-cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLK-KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
|.|.-+.. ++|+.|++||.|+.||++|+..+|.||.+|+|.++
T Consensus 32 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~v 75 (114)
T PRK00624 32 GNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEV 75 (114)
T ss_pred CCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEE
Confidence 44444333 66999999999999999999999999999999986
No 89
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=98.15 E-value=8.7e-06 Score=71.75 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=32.6
Q ss_pred eeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439 87 MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE 123 (219)
Q Consensus 87 ~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~ 123 (219)
..|+||++|+|..+.++.|+. |..|++|+.|.+.+.
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~~~ 240 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQV-VSPGQPLMAVVPAEQ 240 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCE-eCCCCeeEEEEcCCc
Confidence 469999999999999999999 999999999976544
No 90
>PRK00624 glycine cleavage system protein H; Provisional
Probab=98.14 E-value=4.8e-06 Score=62.91 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=45.5
Q ss_pred eEEecCCCCCCCceEEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecC
Q psy10439 44 QEIKMPSLSPTMTEGTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104 (219)
Q Consensus 44 ~~i~~P~~~~~~~~g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~ 104 (219)
..|-|-+.+.. .-|.|..+.. ++|+.|++||.+++||++|+..+|.||.+|+|.+++-..
T Consensus 19 ~~vGiT~~a~~-~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l 79 (114)
T PRK00624 19 VRLGLTSKMQE-NLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTAL 79 (114)
T ss_pred EEEeeCHHHHH-hcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHh
Confidence 34444443332 2256666665 569999999999999999999999999999999986433
No 91
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=98.13 E-value=1.2e-05 Score=70.89 Aligned_cols=67 Identities=16% Similarity=0.271 Sum_probs=57.9
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccC---------------------------------------------------
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK--------------------------------------------------- 84 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K--------------------------------------------------- 84 (219)
..|+|.+++|++||.|++||+|+.++...
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~ 133 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT 133 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 34999999999999999999999998721
Q ss_pred -------------------ceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439 85 -------------------AVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE 123 (219)
Q Consensus 85 -------------------~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~ 123 (219)
....|+||++|+|.++.++.|+. |..|++++.+.+...
T Consensus 134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~-V~~g~~l~~Iv~~~~ 190 (310)
T PRK10559 134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEF-ITRGSTAVALVKQNS 190 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCE-ecCCCeeEEEEeCCC
Confidence 01359999999999999999999 999999999876543
No 92
>PRK13380 glycine cleavage system protein H; Provisional
Probab=98.13 E-value=4e-06 Score=65.92 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=51.4
Q ss_pred eeEEecCCCCCCCceEEEEEEEeC-CCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC
Q psy10439 43 QQEIKMPSLSPTMTEGTIVKWLKK-EGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 106 (219)
Q Consensus 43 ~~~i~~P~~~~~~~~g~i~~w~v~-~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd 106 (219)
...|-|-+.... .-|.|..+.++ +|+.|++||.++.||++|+..+|.||.+|+|.+++....+
T Consensus 30 ~~~vGitd~aq~-~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~ 93 (144)
T PRK13380 30 TVTVGITDYAQT-MAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED 93 (144)
T ss_pred EEEEecCHHHHH-hcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence 345555554433 23889998887 8999999999999999999999999999999999876544
No 93
>PRK13380 glycine cleavage system protein H; Provisional
Probab=98.10 E-value=6.8e-06 Score=64.62 Aligned_cols=43 Identities=19% Similarity=0.219 Sum_probs=39.3
Q ss_pred ceeeeEeec-CCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLKK-EGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v~-~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
|.|..+.++ +|+.|++||.++.||++|+..+|.||.+|+|.++
T Consensus 44 G~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~v 87 (144)
T PRK13380 44 GDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEV 87 (144)
T ss_pred CCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEE
Confidence 667776665 8999999999999999999999999999999986
No 94
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=98.06 E-value=1.1e-05 Score=70.18 Aligned_cols=66 Identities=26% Similarity=0.401 Sum_probs=57.6
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCc--------------------------------------------------
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKA-------------------------------------------------- 85 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~-------------------------------------------------- 85 (219)
..|+|.+++|++||.|++||+|+.+++...
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~ 112 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE 112 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 349999999999999999999999975211
Q ss_pred ---------------------eeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 86 ---------------------VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 86 ---------------------~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
...|+||.+|+|..+.+..|+. +..|++|+.+.+..
T Consensus 113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAY-VTAGQTLATIVDLD 169 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCce-eCCCCcEEEEEcCC
Confidence 2369999999999999999999 99999999997654
No 95
>KOG0368|consensus
Probab=98.00 E-value=1.2e-05 Score=81.17 Aligned_cols=66 Identities=23% Similarity=0.512 Sum_probs=61.1
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE 123 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~ 123 (219)
+.|++++|+|+.|++|..||.-++||.|||.+.+.|+.+|+| +...++|+. +..|.+|+.+..+.+
T Consensus 692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~-i~aG~vlakL~lDdp 757 (2196)
T KOG0368|consen 692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDA-IEAGSVLAKLTLDDP 757 (2196)
T ss_pred CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCc-cCccceeEEeecCCh
Confidence 569999999999999999999999999999999999999998 777899999 999999999875543
No 96
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.96 E-value=1.1e-05 Score=62.11 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=33.7
Q ss_pred cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 184 KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 184 ~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
++|++|++||+++.||++|+..+|.||.+|+|.++
T Consensus 45 ~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~v 79 (127)
T TIGR00527 45 EVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEV 79 (127)
T ss_pred CCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEe
Confidence 68999999999999999999999999999999986
No 97
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.92 E-value=1.6e-05 Score=61.30 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=33.7
Q ss_pred cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 184 KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 184 ~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
++|+.|++||+++.||++|+..+|.||.+|+|.++
T Consensus 46 ~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~v 80 (127)
T PRK01202 46 EVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEV 80 (127)
T ss_pred CCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEE
Confidence 67999999999999999999999999999999986
No 98
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.91 E-value=4.3e-05 Score=69.39 Aligned_cols=66 Identities=26% Similarity=0.312 Sum_probs=55.2
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccC---------------------------------------------------
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK--------------------------------------------------- 84 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K--------------------------------------------------- 84 (219)
..|+|.+++|++||.|++||+|+.|+...
T Consensus 72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~ 151 (397)
T PRK15030 72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 151 (397)
T ss_pred CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 34999999999999999999999998510
Q ss_pred --------------------ceeeEecCCCeEEEEEEecCCCeeeecCcE--EEEEeecC
Q psy10439 85 --------------------AVMSFETEEEGILAKILVPENTTDVKVGTL--IAVMVEEG 122 (219)
Q Consensus 85 --------------------~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~--l~~i~~~~ 122 (219)
....|+||++|+|.+.+++.|+. |..|++ |+.+.+..
T Consensus 152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~~~ 210 (397)
T PRK15030 152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQLD 210 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCE-ECCCCCceEEEEEecC
Confidence 01359999999999999999999 999985 67765444
No 99
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.90 E-value=4.1e-05 Score=69.51 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=32.6
Q ss_pred eeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439 87 MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE 123 (219)
Q Consensus 87 ~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~ 123 (219)
..|+||++|+|..+.++.|+. |..|++|+.|.+...
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~-V~~g~pl~~Iv~~~~ 251 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQ-ISPTTPLMAVVPATN 251 (390)
T ss_pred CEEECCCCeEEEEEecCCCCE-eCCCCeEEEEEeCCc
Confidence 369999999999999999999 999999999976553
No 100
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.90 E-value=5e-05 Score=68.60 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=55.7
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCc--------------------------------------------------
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKA-------------------------------------------------- 85 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~-------------------------------------------------- 85 (219)
..|+|.++++++||.|++||+|+.|+....
T Consensus 70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~ 149 (385)
T PRK09578 70 VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADER 149 (385)
T ss_pred CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 459999999999999999999999977210
Q ss_pred ---------------------eeeEecCCCeEEEEEEecCCCeeeecC--cEEEEEeecC
Q psy10439 86 ---------------------VMSFETEEEGILAKILVPENTTDVKVG--TLIAVMVEEG 122 (219)
Q Consensus 86 ---------------------~~~i~ap~~G~v~~i~v~~Gd~~V~~G--~~l~~i~~~~ 122 (219)
...|+||++|+|.+.+++.|+. |..| .+|+.|.+..
T Consensus 150 ~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~-V~~g~~~~l~~i~~~~ 208 (385)
T PRK09578 150 QAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGAL-VGQDQATPLTTVEQLD 208 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCe-ecCCCCcceEEEEecC
Confidence 1369999999999999999999 9885 4888886543
No 101
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.89 E-value=4.4e-05 Score=58.81 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=52.9
Q ss_pred eEEecCCCCCCCceEEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCC---Ceeee---cC-cEE
Q psy10439 44 QEIKMPSLSPTMTEGTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN---TTDVK---VG-TLI 115 (219)
Q Consensus 44 ~~i~~P~~~~~~~~g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~G---d~~V~---~G-~~l 115 (219)
..|-|-+.+.. .=|.|..+.. +.|++|++||.++.||++|...+|.||.+|+|.+++.... +. +. -| .-|
T Consensus 24 ~~vGit~~a~~-~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~-ln~~p~~~gWl 101 (127)
T PRK01202 24 ATVGITDHAQE-QLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPEL-VNEDPYGEGWL 101 (127)
T ss_pred EEEeeCHHHHh-hcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHh-hcCCCCCCceE
Confidence 44444443322 2256655554 5699999999999999999999999999999999954433 33 33 33 367
Q ss_pred EEEeec
Q psy10439 116 AVMVEE 121 (219)
Q Consensus 116 ~~i~~~ 121 (219)
+.+...
T Consensus 102 ~~v~~~ 107 (127)
T PRK01202 102 FKIKPS 107 (127)
T ss_pred EEEEeC
Confidence 776543
No 102
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.82 E-value=6.9e-05 Score=67.71 Aligned_cols=66 Identities=23% Similarity=0.259 Sum_probs=55.7
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccC---------------------------------------------------
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK--------------------------------------------------- 84 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K--------------------------------------------------- 84 (219)
..|+|.++++++||.|++||+|+.|+...
T Consensus 68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~ 147 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN 147 (385)
T ss_pred CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 35999999999999999999999998620
Q ss_pred --------------------ceeeEecCCCeEEEEEEecCCCeeeecCc--EEEEEeecC
Q psy10439 85 --------------------AVMSFETEEEGILAKILVPENTTDVKVGT--LIAVMVEEG 122 (219)
Q Consensus 85 --------------------~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~--~l~~i~~~~ 122 (219)
....|+||++|+|.+.+++.|+. |..|+ +|+.+.+..
T Consensus 148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~~~ 206 (385)
T PRK09859 148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGAL-VTANQADSLVTVQRLD 206 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCe-ECCCCCcceEEEEecC
Confidence 11469999999999999999999 99985 688776544
No 103
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.80 E-value=5.4e-05 Score=66.93 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=31.9
Q ss_pred eeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 87 MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 87 ~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
..|+||++|+|..+.+..|+. |..|++|+.|.+..
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~-V~~G~~l~~I~~~~ 238 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTM-LNAGSTVFTLSLTR 238 (331)
T ss_pred CEEECCCCeEEEeccCCCCCC-cCCCCeEEEEecCC
Confidence 479999999999999999999 99999999997554
No 104
>KOG0369|consensus
Probab=97.74 E-value=4.7e-05 Score=72.25 Aligned_cols=43 Identities=28% Similarity=0.418 Sum_probs=41.8
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
|+|+++.|++|++|++||+|+.+.+|||.+=|.||.+|+|+++
T Consensus 1115 G~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v 1157 (1176)
T KOG0369|consen 1115 GTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKV 1157 (1176)
T ss_pred CceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEE
Confidence 7799999999999999999999999999999999999999986
No 105
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.74 E-value=4.1e-05 Score=49.27 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=26.5
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCc
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA 85 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~ 85 (219)
.|+|.+|+|++||.|++||+|+.+++...
T Consensus 10 ~G~V~~v~V~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 10 SGRVESVYVKEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred CEEEEEEEecCCCEEcCCCEEEEECcHHH
Confidence 59999999999999999999999987654
No 106
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.73 E-value=4.4e-05 Score=58.80 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=41.1
Q ss_pred EEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC
Q psy10439 58 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 106 (219)
Q Consensus 58 g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd 106 (219)
|.|..+.. ++|++|++||.++.||++|+..+|.||.+|+|.+++-..-+
T Consensus 36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~ 85 (127)
T TIGR00527 36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALED 85 (127)
T ss_pred CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhh
Confidence 55555543 57999999999999999999999999999999998755433
No 107
>PRK12784 hypothetical protein; Provisional
Probab=97.67 E-value=0.00037 Score=48.46 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=58.7
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCc-eeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKA-VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~-~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
-.|+|.++++.+++.|-+.+.|+-|+++.. ...|.-..+|.|..++++.|+. |..+..|+.++++
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~-i~~dtlL~~~edD 77 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQ-IHTDTLLVRLEDD 77 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCce-ecCCcEEEEEeec
Confidence 359999999999999999999999998655 5568889999999999999999 9999999998754
No 108
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.66 E-value=0.00013 Score=66.82 Aligned_cols=65 Identities=22% Similarity=0.321 Sum_probs=54.4
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccC---------------------------------------------------
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK--------------------------------------------------- 84 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K--------------------------------------------------- 84 (219)
..|+|.++++++||.|++||+|+.|+...
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~ 173 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS 173 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 45999999999999999999999996521
Q ss_pred --------------------ceeeEecCCCeEEEEEEecCCCeeeecCc--EEEEEeec
Q psy10439 85 --------------------AVMSFETEEEGILAKILVPENTTDVKVGT--LIAVMVEE 121 (219)
Q Consensus 85 --------------------~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~--~l~~i~~~ 121 (219)
....|+||++|+|..+.+..|+. |..|+ +++.|.+.
T Consensus 174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~-V~~g~~~~l~~i~~~ 231 (415)
T PRK11556 174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQ-ISSGDTTGIVVITQT 231 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCce-ecCCCCceeEEEecC
Confidence 02369999999999999999999 99984 67776543
No 109
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.64 E-value=0.00019 Score=64.46 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=54.3
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccC----------------------------------------------------
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDK---------------------------------------------------- 84 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K---------------------------------------------------- 84 (219)
.|.|.++++++||.|++||+|+.++...
T Consensus 69 ~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~ 148 (370)
T PRK11578 69 SGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDT 148 (370)
T ss_pred ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 4999999999999999999999998631
Q ss_pred ---------------------------------ceeeEecCCCeEEEEEEecCCCeeeecC---cEEEEEeecC
Q psy10439 85 ---------------------------------AVMSFETEEEGILAKILVPENTTDVKVG---TLIAVMVEEG 122 (219)
Q Consensus 85 ---------------------------------~~~~i~ap~~G~v~~i~v~~Gd~~V~~G---~~l~~i~~~~ 122 (219)
....|+||++|+|..+++..|+. |..| .+|+.|.+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~-V~~~~~~~~l~~i~~~~ 221 (370)
T PRK11578 149 AATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADMS 221 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcE-eecccCCceEEEEecCC
Confidence 01269999999999999999999 9765 3688775543
No 110
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.60 E-value=0.00012 Score=47.05 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=32.4
Q ss_pred eeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 86 VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 86 ~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
+..|.+|.+|+|.++++++|+. |+.|++|+.+....
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~~-VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQQ-VKKGDVLLVLDSPD 37 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCCE-EcCCCEEEEECcHH
Confidence 3578999999999999999999 99999999997543
No 111
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=97.54 E-value=0.0002 Score=54.77 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=35.7
Q ss_pred EEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecC
Q psy10439 58 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104 (219)
Q Consensus 58 g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~ 104 (219)
|.|+.+.. ++|+.+++|+.++.||+.|...++.||.+|+|.+++-..
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l 78 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEEL 78 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHH
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcccc
Confidence 55555544 559999999999999999999999999999999987543
No 112
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=97.47 E-value=0.00012 Score=63.79 Aligned_cols=25 Identities=40% Similarity=0.625 Sum_probs=19.7
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
.|+| +|+|++||.|++||+|+.+++
T Consensus 29 ~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 29 SGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp -EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred CEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 4999 999999999999999999988
No 113
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=97.44 E-value=0.00034 Score=53.47 Aligned_cols=43 Identities=28% Similarity=0.402 Sum_probs=33.8
Q ss_pred ceeeeEe-ecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWL-KKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~-v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
|.|..+. .++|+.+++|++++.||+.|+..++.||.+|+|.++
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~v 74 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEV 74 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEE
Confidence 4454433 366999999999999999999999999999999986
No 114
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=97.37 E-value=0.00057 Score=60.15 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=29.0
Q ss_pred eEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439 88 SFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE 123 (219)
Q Consensus 88 ~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~ 123 (219)
.|+||++|+|..+++..|+. |.. ++|+.|.+...
T Consensus 206 ~i~AP~dG~V~~~~~~~G~~-v~~-~~l~~i~~~~~ 239 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGEV-IGS-EGILEMGDTSQ 239 (327)
T ss_pred EEECCCCeEEEEEecCCCCc-cCC-CccEEEecCCc
Confidence 57899999999999999998 886 88888876543
No 115
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=97.34 E-value=0.00024 Score=54.60 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=34.0
Q ss_pred ecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 183 KKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 183 v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
.++|+.|++|+.++.||+-|+..+|.||.+|+|.++
T Consensus 47 pe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvev 82 (131)
T COG0509 47 PEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEV 82 (131)
T ss_pred CCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEe
Confidence 478899999999999999999999999999999886
No 116
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=97.27 E-value=0.0014 Score=59.92 Aligned_cols=65 Identities=28% Similarity=0.358 Sum_probs=53.1
Q ss_pred CCeEEEEEEecCCCeeeecCcEEEEEeecCccccccccccCCCCccccCCCCCCCCCCCCCCCCCCCCceeeccCCCCCC
Q psy10439 93 EEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPT 172 (219)
Q Consensus 93 ~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~~~~~~~~~~~~~a~~a~a~a~a~~~a~~~aa~~~~~~~~~i~~P~lg~~ 172 (219)
..|.|.++++++||. |..|++|+.++.+..... +..|
T Consensus 13 ~eg~i~~w~v~~Gd~-V~~g~~l~~vEtdK~~~e-------------------------------------i~a~----- 49 (403)
T TIGR01347 13 TEGTVAEWHKKVGDT-VKRDENIVEIETDKVVLE-------------------------------------VPSP----- 49 (403)
T ss_pred ceEEEEEEEeCCcCE-eCCCCEEEEEEEcceeeE-------------------------------------EecC-----
Confidence 469999999999999 999999999976543211 1111
Q ss_pred cccceeeeEeecCCCeecCCCeEEEEeec
Q psy10439 173 MTEGTIVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 173 ~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
.+|.+.++++++|+.|..|++|+.++.+
T Consensus 50 -~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 50 -ADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred -CCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 3589999999999999999999999865
No 117
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=97.22 E-value=0.00056 Score=52.60 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=45.9
Q ss_pred eeEEecCCCCCCCceEEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecC
Q psy10439 43 QQEIKMPSLSPTMTEGTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104 (219)
Q Consensus 43 ~~~i~~P~~~~~~~~g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~ 104 (219)
...|-|-+.+.. .=|.|+-+.. +.|+.|++|+.++.||+-|+..++.||.+|.|.+++-..
T Consensus 25 ~~tvGiT~~aq~-~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l 86 (131)
T COG0509 25 TATVGITDYAQD-QLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEAL 86 (131)
T ss_pred EEEEeCCHHHHH-hcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhh
Confidence 334444444332 2266666644 779999999999999999999999999999998887443
No 118
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=97.09 E-value=0.0031 Score=56.51 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=31.8
Q ss_pred eEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439 88 SFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE 123 (219)
Q Consensus 88 ~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~ 123 (219)
.|+||.+|+|.+..+..|++ |..|.+|+.+.+...
T Consensus 210 ~IrAP~dG~V~~~~v~~G~~-V~~G~~l~alVp~~~ 244 (352)
T COG1566 210 VIRAPVDGYVTNLSVRVGQY-VSAGTPLMALVPLDS 244 (352)
T ss_pred EEECCCCceEEeecccCCCe-ecCCCceEEEecccc
Confidence 39999999999999999999 999999999877543
No 119
>KOG0238|consensus
Probab=97.08 E-value=0.00047 Score=63.73 Aligned_cols=43 Identities=30% Similarity=0.402 Sum_probs=41.2
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
|.|.+++|++||+|++||.|+.+++||+..-+.||.+|+|+.+
T Consensus 610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v 652 (670)
T KOG0238|consen 610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDV 652 (670)
T ss_pred CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeE
Confidence 5789999999999999999999999999999999999999876
No 120
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=97.07 E-value=0.0017 Score=55.07 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=30.6
Q ss_pred eEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 88 SFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 88 ~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
.|+||++|+|..+.+..|+. |..|++|+.|.+..
T Consensus 90 ~i~AP~dG~V~~~~~~~G~~-v~~g~~l~~i~~~~ 123 (265)
T TIGR00999 90 EVRSPFDGYITQKSVTLGDY-VAPQAELFRVADLG 123 (265)
T ss_pred EEECCCCeEEEEEEcCCCCE-eCCCCceEEEEcCC
Confidence 47999999999999999999 99999999987644
No 121
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=96.95 E-value=0.0015 Score=48.33 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=37.7
Q ss_pred cceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
-|...+..|++||+|++||.|+.-+. -....|-|+.+|+|..|
T Consensus 38 ~G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I 80 (101)
T PF13375_consen 38 IGAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAI 80 (101)
T ss_pred CCCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEE
Confidence 36667899999999999999999874 55789999999999987
No 122
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=96.94 E-value=0.0043 Score=56.90 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=52.7
Q ss_pred CCeEEEEEEecCCCeeeecCcEEEEEeecCccccccccccCCCCccccCCCCCCCCCCCCCCCCCCCCceeeccCCCCCC
Q psy10439 93 EEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPT 172 (219)
Q Consensus 93 ~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~~~~~~~~~~~~~a~~a~a~a~a~~~a~~~aa~~~~~~~~~i~~P~lg~~ 172 (219)
..|.|.++++++||. |..|++|+.++.+..... +..|
T Consensus 11 ~eg~i~~w~v~~Gd~-V~~g~~l~~vEtdK~~~e-------------------------------------v~a~----- 47 (416)
T PLN02528 11 AECELLRWFVKEGDQ-VEEFQPLCEVQSDKATIE-------------------------------------ITSR----- 47 (416)
T ss_pred cEEEEEEEEeCCCCE-ECCCCEEEEEEeCceeEE-------------------------------------EecC-----
Confidence 468999999999999 999999999975543211 1111
Q ss_pred cccceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439 173 MTEGTIVKWLKKEGDAVVPGDVLCEIQTDK 202 (219)
Q Consensus 173 ~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K 202 (219)
..|.+.+|++++|+.|..|++|+.++.+.
T Consensus 48 -~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 48 -YKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred -CCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 34889999999999999999999997654
No 123
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=96.88 E-value=0.0039 Score=53.25 Aligned_cols=59 Identities=29% Similarity=0.427 Sum_probs=49.6
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
.|.+ +..++.||.|++||+|+.|.. .+|+||.+|+|.- ++++|-. |..|..|+.|.+-.
T Consensus 172 ~Gi~-~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrG-lirdG~~-V~~G~Ki~dIDPR~ 230 (256)
T TIGR03309 172 DGIV-TPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRG-LIHEGLT-VTEGLKIGDVDPRG 230 (256)
T ss_pred CeEE-eeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEE-EecCCCC-cCCCCEEEEECCCC
Confidence 3555 559999999999999999975 7999999999954 5678888 99999999986543
No 124
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=96.82 E-value=0.0057 Score=45.21 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=40.1
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecC
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~ 104 (219)
-|.-.+-.|++||.|++||.|++-+. -....|.|+.+|+|..+.-..
T Consensus 38 ~G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~~~ 84 (101)
T PF13375_consen 38 IGAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEKRP 84 (101)
T ss_pred CCCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEeeeE
Confidence 36666889999999999999999974 568899999999999987544
No 125
>PRK12784 hypothetical protein; Provisional
Probab=96.69 E-value=0.013 Score=40.93 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=58.6
Q ss_pred eeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCccccccccccCCCCccccCCCCCCCCCCCCCCCCCCCCceeecc
Q psy10439 87 MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINM 166 (219)
Q Consensus 87 ~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~~~~~~~~~~~~~a~~a~a~a~a~~~a~~~aa~~~~~~~~~i~~ 166 (219)
-+|.||.-|+|.++++.++++ |-.=.+|+.|..-+.... ++.
T Consensus 6 e~iyS~~~G~Vekifi~esSy-VYEWEkL~~I~~~dg~le------------------------------------~v~- 47 (84)
T PRK12784 6 EEICSSYEGKVEEIFVNESSY-VYEWEKLMMIRKNNGELE------------------------------------KVA- 47 (84)
T ss_pred hhhcCccccEEEEEEEcCCce-EEeeeeeeEEeecCCcEE------------------------------------EEE-
Confidence 358999999999999999999 999999999864432211 011
Q ss_pred CCCCCCcccceeeeEeecCCCeecCCCeEEEEeecce
Q psy10439 167 PSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKA 203 (219)
Q Consensus 167 P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~ 203 (219)
+| -.|.|....|.+||.|..+..|+.+|.|-.
T Consensus 48 --vG---iSG~I~~v~Ve~Gq~i~~dtlL~~~edDll 79 (84)
T PRK12784 48 --VG---ISGNIRLVNVVVGQQIHTDTLLVRLEDDLL 79 (84)
T ss_pred --Ee---eeeeEEEEEeecCceecCCcEEEEEeeceE
Confidence 11 248899999999999999999999998853
No 126
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=96.54 E-value=0.0096 Score=54.97 Aligned_cols=67 Identities=27% Similarity=0.320 Sum_probs=53.1
Q ss_pred CCCeEEEEEEecCCCeeeecCcEEEEEeecCccccccccccCCCCccccCCCCCCCCCCCCCCCCCCCCceeeccCCCCC
Q psy10439 92 EEEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSP 171 (219)
Q Consensus 92 p~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~~~~~~~~~~~~~a~~a~a~a~a~~~a~~~aa~~~~~~~~~i~~P~lg~ 171 (219)
-.+|.|.++++++||. |..|++|+.++.+..... +..|
T Consensus 11 ~~eg~i~~w~v~~Gd~-V~~g~~l~~vetdKa~~e-------------------------------------i~a~---- 48 (435)
T TIGR01349 11 MTTGNLAKWLKKEGDK-VNPGDVIAEIETDKATME-------------------------------------FEAV---- 48 (435)
T ss_pred cceEEEEEEEeCCCCc-cCCCCEEEEEEecceeeE-------------------------------------EcCC----
Confidence 3578999999999999 999999999965443211 1111
Q ss_pred CcccceeeeEeecCCCe-ecCCCeEEEEeecc
Q psy10439 172 TMTEGTIVKWLKKEGDA-VVPGDVLCEIQTDK 202 (219)
Q Consensus 172 ~~~~~~i~~~~v~~Gd~-V~~g~~l~~ve~~K 202 (219)
..|.+.++++++|+. |..|++|+.++.+.
T Consensus 49 --~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 49 --EEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred --CCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 348899999999999 99999999997653
No 127
>COG3608 Predicted deacylase [General function prediction only]
Probab=96.39 E-value=0.011 Score=52.47 Aligned_cols=60 Identities=28% Similarity=0.418 Sum_probs=48.7
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEecc---CceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTD---KAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~---K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
++-+++.+|+.||+|++||.|+.|-.. +...+|+|+.+|+|..+.... . ++.|+.++.+.
T Consensus 263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~--~-v~~Gdl~~~v~ 325 (331)
T COG3608 263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLR--L-VQPGDLLKVVG 325 (331)
T ss_pred CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeecc--c-cCCCCeeeeec
Confidence 466789999999999999999999764 678999999999998876433 4 66776666654
No 128
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=96.25 E-value=0.0072 Score=51.78 Aligned_cols=44 Identities=34% Similarity=0.400 Sum_probs=37.1
Q ss_pred EEEEEEeCCCCeEcCCCeEEEEeccCce--eeEecCCCeEEEEEEecCCCe
Q psy10439 59 TIVKWLKKEGDAVAPGDVLCEIQTDKAV--MSFETEEEGILAKILVPENTT 107 (219)
Q Consensus 59 ~i~~w~v~~Gd~V~~gd~l~~iet~K~~--~~i~ap~~G~v~~i~v~~Gd~ 107 (219)
-.-+..|++||+|+.||+|++ ||.. +-+.||.+|+|.+|.- |++
T Consensus 39 ~~Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R--G~r 84 (257)
T PF05896_consen 39 MKPKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR--GER 84 (257)
T ss_pred CCccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec--CCC
Confidence 335899999999999999998 7764 6678999999999874 665
No 129
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=96.23 E-value=0.0055 Score=52.51 Aligned_cols=37 Identities=41% Similarity=0.498 Sum_probs=32.8
Q ss_pred eeEeecCCCeecCCCeEEEEeecceeee--eeCCCCeEEEEc
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQTDKAVMS--FETEEEGILAKI 218 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve~~K~~~~--i~a~~~G~v~~i 218 (219)
-+.+|++||+|+.||+|+. ||..-+ +.||.+|+|.+|
T Consensus 41 Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I 79 (257)
T PF05896_consen 41 PKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAI 79 (257)
T ss_pred ccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEE
Confidence 4788999999999999998 786655 789999999987
No 130
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=96.21 E-value=0.038 Score=50.49 Aligned_cols=116 Identities=14% Similarity=0.179 Sum_probs=66.4
Q ss_pred EEEEeccC-ceeeEecCCCeEEEEEE-ecCCCeeeecCcEEEEEeecCccccc--cc-cccCCCCccccC-------CCC
Q psy10439 77 LCEIQTDK-AVMSFETEEEGILAKIL-VPENTTDVKVGTLIAVMVEEGEDWQN--VS-VSATSPSATASA-------SSA 144 (219)
Q Consensus 77 l~~iet~K-~~~~i~ap~~G~v~~i~-v~~Gd~~V~~G~~l~~i~~~~~~~~~--~~-~~~~~~a~~a~a-------~a~ 144 (219)
...|+.+. ....|.++.+|+|.+++ +..||. |+.|++|+.|...+-..+. .. ............ ...
T Consensus 113 ~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~-VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~ 191 (409)
T PRK09783 113 PANVSYNEYQYAIVQARAAGFIDKVYPLTVGDK-VQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAG 191 (409)
T ss_pred eEEEEECCCceEEEeCCcCEEEEEEEecCCCCE-ECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcC
Confidence 34455443 35679999999999998 899999 9999999999643211000 00 000000000000 000
Q ss_pred CCCCC-CCCCCCCCCCCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEe
Q psy10439 145 SPPPP-PPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQ 199 (219)
Q Consensus 145 a~~~a-~~~aa~~~~~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve 199 (219)
.+... ..-...........|..| -.|.|.+..+.+|+.|..|+.|+.|.
T Consensus 192 i~~~~i~~l~~~~~~~~~~~I~AP------~dGvV~~~~v~~G~~V~~g~~L~~I~ 241 (409)
T PRK09783 192 MPEADIRRLIATRKIQTRFTLKAP------IDGVITAFDLRAGMNIAKDNVVAKIQ 241 (409)
T ss_pred CCHHHHHHHHHcCCCCCcEEEECC------CCeEEEEEECCCCCEECCCCeEEEEE
Confidence 00000 000000011123467777 35889999999999999999999984
No 131
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.14 E-value=0.027 Score=49.08 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=45.2
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEecc--CceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQTD--KAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet~--K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
+-+.+..++.||.|++||+|+.|..- ....+++||.+|+|.-+. ..-. |..|+.++.|
T Consensus 227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~-v~~G~~l~~i 286 (287)
T cd06251 227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPL-VNEGDALFHI 286 (287)
T ss_pred CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCc-cCCCCEEEEe
Confidence 34457899999999999999999652 234789999999995554 4445 8888888865
No 132
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.10 E-value=0.027 Score=49.43 Aligned_cols=59 Identities=29% Similarity=0.321 Sum_probs=48.0
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEec---cCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQT---DKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet---~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
.+-+....++.||.|++||.|++|-. +....++.||.+|+|.-+.. .-. |..|+.|+.|
T Consensus 236 ~~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~~--~p~-v~~G~~l~~i 297 (298)
T cd06253 236 TSGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLRE--YPL-VYEGSLVARI 297 (298)
T ss_pred CCeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEeec--CCe-ecCCceEEEe
Confidence 35567888999999999999999965 34577899999999977654 446 8899988876
No 133
>KOG0368|consensus
Probab=96.07 E-value=0.0078 Score=61.78 Aligned_cols=45 Identities=29% Similarity=0.528 Sum_probs=42.3
Q ss_pred ccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
..|+..+|+|+.|++|..||+-+++|.|||.+.+.|+.+|+|.-|
T Consensus 692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~~i 736 (2196)
T KOG0368|consen 692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQLI 736 (2196)
T ss_pred CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceEEEe
Confidence 458899999999999999999999999999999999999999865
No 134
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.88 E-value=0.044 Score=48.39 Aligned_cols=60 Identities=25% Similarity=0.369 Sum_probs=47.8
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEecc----CceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTD----KAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~----K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
.+-+....++.||.|++||+|++|-.- ....+++||.+|+|.-+... -. |..|+.|+.+.
T Consensus 251 ~~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~~~--~~-v~~G~~l~~i~ 314 (316)
T cd06252 251 HPGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARRPP--GL-VRRGDCLAVLA 314 (316)
T ss_pred CCeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEeeCC--Cc-cCCCCEEEEEe
Confidence 456778999999999999999998653 44678999999999866543 34 77888888774
No 135
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=95.82 E-value=0.038 Score=49.78 Aligned_cols=59 Identities=27% Similarity=0.403 Sum_probs=46.7
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEec----cCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQT----DKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet----~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
.|-+...+++.||.|++||.|++|-. +....+|.||.+|+|.-+. ..-. |..|+.|+.|
T Consensus 296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~--~~~~-V~~G~~l~~I 358 (359)
T cd06250 296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARA--SRRF-VRAGDELAKI 358 (359)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEec--CCcc-ccCCCeEEEe
Confidence 46677899999999999999999954 2334457999999987665 4446 8889988876
No 136
>PF13437 HlyD_3: HlyD family secretion protein
Probab=95.60 E-value=0.023 Score=41.40 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=29.3
Q ss_pred eEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 88 SFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 88 ~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
.|+||++|+|..+.++.|+. |..|++|+.+.+..
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~~ 34 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEV-VSAGQPLAEIVDTD 34 (105)
T ss_pred CEECCCCEEEEEEeCCCCCE-ECCCCEEEEEEccc
Confidence 37899999999999999999 99999999887653
No 137
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=95.55 E-value=0.06 Score=47.88 Aligned_cols=59 Identities=25% Similarity=0.477 Sum_probs=47.3
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEec----cCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQT----DKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet----~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
.+-+....++.||.|++||.|++|-. .....++.||.+|+|.-+. ..-. |..|+.|+.+
T Consensus 262 ~~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~-V~~Gd~l~~i 324 (325)
T TIGR02994 262 DDGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGL-IKSGDCIAVL 324 (325)
T ss_pred CCeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCc-cCCCCEEEEe
Confidence 35566889999999999999999965 2246789999999998755 4456 8889988875
No 138
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=95.43 E-value=0.025 Score=44.69 Aligned_cols=49 Identities=29% Similarity=0.313 Sum_probs=36.6
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCce-eeEecCCCeEEEEEEecC
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAV-MSFETEEEGILAKILVPE 104 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~-~~i~ap~~G~v~~i~v~~ 104 (219)
.+|..+-..+.+||.|.+||.|+.+.|.|-. .-++||.+|+|.-+.--.
T Consensus 87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~p 136 (150)
T PF09891_consen 87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEIP 136 (150)
T ss_dssp EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEET
T ss_pred ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEecC
Confidence 4677788899999999999999999999996 559999999998776433
No 139
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=94.97 E-value=0.044 Score=46.92 Aligned_cols=47 Identities=26% Similarity=0.433 Sum_probs=38.0
Q ss_pred ceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 161 GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 161 ~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
..-+..|.-| +....++.||.|++||+|+.+.. .+|.||.+|+|..+
T Consensus 164 Er~IrAp~~G-------i~~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl 210 (256)
T TIGR03309 164 ERVLRAPADG-------IVTPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL 210 (256)
T ss_pred eEEEECCCCe-------EEeeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE
Confidence 3456666443 44668999999999999999965 79999999999865
No 140
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=94.79 E-value=0.037 Score=51.24 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=35.4
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
|...+.+|++||+|++||+|++-... ....+.||.+|+|++|
T Consensus 38 G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I 79 (447)
T TIGR01936 38 GMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAI 79 (447)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEE
Confidence 55667999999999999999985322 5677999999999987
No 141
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=94.76 E-value=0.064 Score=49.71 Aligned_cols=44 Identities=25% Similarity=0.282 Sum_probs=37.1
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEe
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 102 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v 102 (219)
|.-.+..|++||+|+.||+|++-.. -....+.||.+|+|..|.-
T Consensus 38 G~~~k~~Vk~GD~V~~Gq~I~~~~~-~~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 38 GMRPKMKVRPGDKVKAGQPLFEDKK-NPGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCC-CceEEEEcCCCeEEEEEec
Confidence 5666899999999999999998542 2578899999999999953
No 142
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=94.75 E-value=0.031 Score=48.09 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=24.0
Q ss_pred eeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 87 MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 87 ~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
..|.++..|+|.+++|++|+. |+.|++|+.|++.
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~-VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQR-VKKGQVLARLDPT 35 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEE-E-TTSECEEE--H
T ss_pred EEEeCCCCeEEEEEEccCcCE-EeCCCEEEEEEee
Confidence 468899999999999999999 9999999999753
No 143
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=94.68 E-value=0.023 Score=48.90 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=20.2
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
..|.|.+++|++||.|++||+|++|+.
T Consensus 8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~ 34 (305)
T PF00529_consen 8 VGGIVTEILVKEGQRVKKGQVLARLDP 34 (305)
T ss_dssp S-EEEEEE-S-TTEEE-TTSECEEE--
T ss_pred CCeEEEEEEccCcCEEeCCCEEEEEEe
Confidence 349999999999999999999999985
No 144
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=94.54 E-value=0.046 Score=50.65 Aligned_cols=42 Identities=31% Similarity=0.391 Sum_probs=35.3
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
|...+.+|++||+|++||.|+.-... ....+.||.+|+|++|
T Consensus 39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I 80 (448)
T PRK05352 39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAI 80 (448)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEE
Confidence 55668999999999999999964332 4678999999999987
No 145
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.43 E-value=0.12 Score=44.91 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=41.9
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEec--cCceeeEecCCCeEEEEEEecCCCeeeecCcEE
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQT--DKAVMSFETEEEGILAKILVPENTTDVKVGTLI 115 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet--~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l 115 (219)
.+-+.+.+++.||.|++||+|++|-. .....+|.||.+|+|.-+... -. |..|+.|
T Consensus 230 ~~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~~--~~-v~~G~~l 287 (288)
T cd06254 230 ASGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTAT--LP-VRKGDPL 287 (288)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeCC--Cc-cCCCCcc
Confidence 45677888999999999999999843 244678999999999776543 23 5555544
No 146
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=94.21 E-value=0.093 Score=46.65 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=30.4
Q ss_pred eeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 86 VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 86 ~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
...|.++.+|+|.++++++|+. |+.|++|+.|+..
T Consensus 48 ~v~v~~~v~G~V~~v~V~~G~~-VkkGq~L~~ld~~ 82 (346)
T PRK10476 48 VVHVASEVGGRIVELAVTENQA-VKKGDLLFRIDPR 82 (346)
T ss_pred eEEEcccCceEEEEEEeCCCCE-EcCCCEEEEECcH
Confidence 6778889999999999999998 9999999998754
No 147
>KOG3373|consensus
Probab=94.20 E-value=0.031 Score=44.38 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=33.8
Q ss_pred ecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 183 KKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 183 v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
-++|..|.+||.++.+|.=|+..+|.+|.+|+|.+|
T Consensus 88 Pe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEi 123 (172)
T KOG3373|consen 88 PEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEI 123 (172)
T ss_pred CCCCCccccCcceeeeeehhhhhhhhCcCCceEEEe
Confidence 367889999999999999999999999999999997
No 148
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=94.19 E-value=0.083 Score=46.41 Aligned_cols=42 Identities=19% Similarity=0.383 Sum_probs=34.7
Q ss_pred EEeccCceeeEecCCC---eEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 79 EIQTDKAVMSFETEEE---GILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 79 ~iet~K~~~~i~ap~~---G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
.|+...-...|.++.+ |+|.++++++|+. |+.|++|+.|++.
T Consensus 6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~-V~~G~~L~~ld~~ 50 (327)
T TIGR02971 6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDR-VQAGQVLAELDSR 50 (327)
T ss_pred eEeecCceEEecCCCCCCCcEEEEEEccCCCE-ecCCcEEEEecCc
Confidence 3444444567889999 9999999999999 9999999999764
No 149
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=94.16 E-value=0.062 Score=48.02 Aligned_cols=41 Identities=34% Similarity=0.447 Sum_probs=35.2
Q ss_pred EEEeCCCCeEcCCCeEEEEeccCc--eeeEecCCCeEEEEEEecCCCe
Q psy10439 62 KWLKKEGDAVAPGDVLCEIQTDKA--VMSFETEEEGILAKILVPENTT 107 (219)
Q Consensus 62 ~w~v~~Gd~V~~gd~l~~iet~K~--~~~i~ap~~G~v~~i~v~~Gd~ 107 (219)
..+|++||.|++||+|++ ||- .+-+.||.+|+|..|+ .|+.
T Consensus 42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~--RG~K 84 (447)
T COG1726 42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIH--RGEK 84 (447)
T ss_pred cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEee--cccc
Confidence 578999999999999998 776 4678999999999987 5555
No 150
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=94.10 E-value=0.069 Score=46.94 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=32.2
Q ss_pred ceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 85 AVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 85 ~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
....|.++.+|+|.++++++|+. |+.|++|+.|+...
T Consensus 41 ~~~~v~a~~~G~V~~i~v~~G~~-V~kGq~L~~ld~~~ 77 (334)
T TIGR00998 41 NQLQVSSQVSGSVIEVNVDDTDY-VKQGDVLVRLDPTN 77 (334)
T ss_pred ceEEEcccCceEEEEEEeCCCCE-EcCCCEEEEECchH
Confidence 36788999999999999999999 99999999997543
No 151
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=93.91 E-value=0.064 Score=49.51 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=35.5
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
|...+..|++||+|++||+|+.-+ ......|.||.+|+|++|
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i 81 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAI 81 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEe
Confidence 455678999999999999999972 225788999999999987
No 152
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=93.69 E-value=0.062 Score=48.05 Aligned_cols=37 Identities=38% Similarity=0.487 Sum_probs=31.3
Q ss_pred eEeecCCCeecCCCeEEEEeeccee--eeeeCCCCeEEEEcC
Q psy10439 180 KWLKKEGDAVVPGDVLCEIQTDKAV--MSFETEEEGILAKIL 219 (219)
Q Consensus 180 ~~~v~~Gd~V~~g~~l~~ve~~K~~--~~i~a~~~G~v~~i~ 219 (219)
..+|.+||.|++||+|++ ||-. .-+.||.+|+|.+|.
T Consensus 42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~ 80 (447)
T COG1726 42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIH 80 (447)
T ss_pred cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEee
Confidence 467899999999999998 5644 448999999999883
No 153
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=93.63 E-value=0.18 Score=46.63 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=39.5
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
|+|-.+-...| .|....-...|.++..|+|.+++|++||. |+.|++|+.+.+.
T Consensus 41 ~~~~~~v~a~G----------~v~p~~~~~~vq~~~~G~v~~i~V~eG~~-V~~G~~L~~ld~~ 93 (457)
T TIGR01000 41 AKKEIVIRTTG----------TIEPAKILSKIQSTSNNAIKENYLKENKF-VKKGDLLVVYDNG 93 (457)
T ss_pred EeeeEEEEEeE----------EEEecCceEEEEcCCCcEEEEEEcCCCCE-ecCCCEEEEECch
Confidence 45545555555 33434445678899999999999999999 9999999999753
No 154
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=93.37 E-value=0.16 Score=40.16 Aligned_cols=44 Identities=32% Similarity=0.392 Sum_probs=33.3
Q ss_pred cceeeeEeecCCCeecCCCeEEEEeecceeee-eeCCCCeEEEEc
Q psy10439 175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMS-FETEEEGILAKI 218 (219)
Q Consensus 175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~-i~a~~~G~v~~i 218 (219)
+|...-..+.+|+.|.+||.|+.+.|-|-..- +.||.+|+|.-|
T Consensus 88 eG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v 132 (150)
T PF09891_consen 88 EGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFV 132 (150)
T ss_dssp ESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEE
T ss_pred cceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEE
Confidence 56777788999999999999999999997665 999999999754
No 155
>COG3608 Predicted deacylase [General function prediction only]
Probab=93.36 E-value=0.16 Score=45.20 Aligned_cols=44 Identities=30% Similarity=0.468 Sum_probs=38.7
Q ss_pred cceeeeEeecCCCeecCCCeEEEEeec---ceeeeeeCCCCeEEEEc
Q psy10439 175 EGTIVKWLKKEGDAVVPGDVLCEIQTD---KAVMSFETEEEGILAKI 218 (219)
Q Consensus 175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~---K~~~~i~a~~~G~v~~i 218 (219)
++-+.+.+++.||+|++||+|+.+-.. +...||.|+.+|+|..+
T Consensus 263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~ 309 (331)
T COG3608 263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIAR 309 (331)
T ss_pred CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEE
Confidence 445789999999999999999999775 78899999999999764
No 156
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=93.31 E-value=0.09 Score=48.76 Aligned_cols=44 Identities=30% Similarity=0.345 Sum_probs=36.6
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEe
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 102 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v 102 (219)
|.-.+..|++||+|++||.|++-... .+..+.||.+|+|..|..
T Consensus 39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR 82 (448)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence 55668899999999999999964422 468899999999999953
No 157
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=93.12 E-value=0.21 Score=45.78 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=46.0
Q ss_pred EEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 60 IVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 60 i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
|.-..++.|+.-..=+....|+. .-...|.++.+|+|.++++++|+. |+.|++|+.|.+.
T Consensus 62 V~v~~v~~~~~~~~i~~~Gtv~a-~~~v~v~~~vsG~V~~i~v~eG~~-VkkGq~La~ld~~ 121 (415)
T PRK11556 62 VQAATATEQAVPRYLTGLGTVTA-ANTVTVRSRVDGQLMALHFQEGQQ-VKAGDLLAEIDPR 121 (415)
T ss_pred eEEEEEEEeccceEEEEEEEEEe-eeEEEEEccccEEEEEEECCCCCE-ecCCCEEEEECcH
Confidence 44445555554444445567776 356789999999999999999999 9999999999754
No 158
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=93.12 E-value=0.91 Score=34.76 Aligned_cols=26 Identities=31% Similarity=0.310 Sum_probs=22.6
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeec
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
|+--++++++||.|++||+|+.+.-+
T Consensus 79 g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 79 GEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCceEEEecCCCEEcCCCEEEEEcHH
Confidence 56678999999999999999998543
No 159
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=93.12 E-value=0.71 Score=35.74 Aligned_cols=27 Identities=41% Similarity=0.501 Sum_probs=20.7
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDK 202 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K 202 (219)
|+.-++++++||+|++||+|+.+.-++
T Consensus 83 G~gF~~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 83 GEGFETLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp TTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred CcceEEEEeCCCEEECCCEEEEEcHHH
Confidence 667899999999999999999985444
No 160
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=92.98 E-value=0.12 Score=47.61 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=36.6
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEE
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 101 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~ 101 (219)
|.-.+-.|++||+|+.||.|++.+ ......+.||.+|+|.+|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 444578999999999999999973 3358899999999999986
No 161
>KOG3373|consensus
Probab=92.92 E-value=0.079 Score=42.12 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=38.2
Q ss_pred CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCe
Q psy10439 66 KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 107 (219)
Q Consensus 66 ~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~ 107 (219)
+.|-.|.+||.++.+|+=|+..+|.+|.+|.|.+|+-+-.+.
T Consensus 89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~En 130 (172)
T KOG3373|consen 89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEEN 130 (172)
T ss_pred CCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccccC
Confidence 678999999999999999999999999999999998765553
No 162
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=92.83 E-value=0.29 Score=44.25 Aligned_cols=56 Identities=14% Similarity=0.098 Sum_probs=44.1
Q ss_pred EeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 64 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 64 ~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
.++.|+....-+....|+.. -...|.++.+|+|.++++++|+. |+.|++|+.|++.
T Consensus 40 ~v~~~~~~~~~~~~G~v~~~-~~~~l~~~v~G~V~~i~v~~G~~-VkkGqvLa~ld~~ 95 (385)
T PRK09859 40 TLSPGSVNVLSELPGRTVPY-EVAEIRPQVGGIIIKRNFIEGDK-VNQGDSLYQIDPA 95 (385)
T ss_pred EeEEEeccceEEEEEEEEEE-EEEEEeccCcEEEEEEEcCCcCE-ecCCCEEEEECcH
Confidence 44555544444556677655 36789999999999999999999 9999999999754
No 163
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.82 E-value=0.21 Score=45.06 Aligned_cols=33 Identities=36% Similarity=0.556 Sum_probs=26.0
Q ss_pred eeeccCCCCCCcccceeeeEee-cCCCeecCCCeEEEEee
Q psy10439 162 QIINMPSLSPTMTEGTIVKWLK-KEGDAVVPGDVLCEIQT 200 (219)
Q Consensus 162 ~~i~~P~lg~~~~~~~i~~~~v-~~Gd~V~~g~~l~~ve~ 200 (219)
..+..| -.|.|..+.+ .+|+.|..|++|+.+-.
T Consensus 272 ~~i~AP------~dG~V~~~~~~~~G~~v~~g~~l~~i~~ 305 (423)
T TIGR01843 272 LIIRSP------VDGTVQSLKVHTVGGVVQPGETLMEIVP 305 (423)
T ss_pred cEEECC------CCcEEEEEEEEccCceecCCCeeEEEec
Confidence 456666 4577888775 79999999999999953
No 164
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=92.80 E-value=0.14 Score=50.10 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=34.8
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
|...+.+|++||+|.+||+|+.-.. -....|.||.+|+|..|
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~~~-~~s~~vhApvSG~V~~I 87 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQGDG-RMSLPVHAPTSGTVVAI 87 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeecCC-CceeEEeCCCCeEEeee
Confidence 5556789999999999999996432 14688999999999987
No 165
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=92.74 E-value=0.28 Score=44.02 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=34.5
Q ss_pred EEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 79 EIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 79 ~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
.++.. -...|.++.+|+|.++++++|+. |+.|++|+.+...
T Consensus 55 ~v~~~-~~~~l~a~~~G~V~~v~v~~G~~-V~kG~~L~~ld~~ 95 (370)
T PRK11578 55 KLDAL-RKVDVGAQVSGQLKTLSVAIGDK-VKKDQLLGVIDPE 95 (370)
T ss_pred EEEee-eEEEEecccceEEEEEEcCCCCE-EcCCCEEEEECcH
Confidence 44433 35689999999999999999999 9999999999653
No 166
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=92.70 E-value=0.14 Score=44.43 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=27.7
Q ss_pred EEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 79 EIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 79 ~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
.++. -...+.++.+|+| ++++++|+. |..|++|+.+....
T Consensus 16 ~v~~--~~~~v~~~~~G~v-~~~v~~G~~-V~kG~~L~~ld~~~ 55 (328)
T PF12700_consen 16 TVEP--NEVSVSAPVSGRV-SVNVKEGDK-VKKGQVLAELDSSD 55 (328)
T ss_dssp EEEE--SEEEE--SS-EEE-EE-S-TTSE-EETT-EEEEEE-HH
T ss_pred EEEE--EEEEEECCCCEEE-EEEeCCcCE-ECCCCEEEEEEChh
Confidence 4443 5677999999999 999999999 99999999997543
No 167
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=92.70 E-value=1.1 Score=36.25 Aligned_cols=27 Identities=30% Similarity=0.376 Sum_probs=23.2
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDK 202 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K 202 (219)
|+--+++++.||+|++||+|+++.-+.
T Consensus 101 G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 101 GEGFKRIAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred CCceEEEecCCCEEeCCCEEEEEcHHH
Confidence 667899999999999999999985443
No 168
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=92.67 E-value=0.11 Score=48.54 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=36.7
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
|.-...+|++||+|.+||.|..-+. -+..+.||.+|+|.+|
T Consensus 42 g~~~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I 82 (529)
T COG4656 42 GAPGILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAI 82 (529)
T ss_pred CCccceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeee
Confidence 4456789999999999999998776 8899999999999987
No 169
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=92.65 E-value=0.16 Score=43.95 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=32.1
Q ss_pred eeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 86 VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 86 ~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
...+.+|.+|+|.+++++.|+. |+.|++|+.+...
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~-V~kG~~L~~l~~~ 60 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQK-VKKGQVLARLDDD 60 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCE-EcCCCEEEEECCH
Confidence 5679999999999999999999 9999999999653
No 170
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=92.63 E-value=0.16 Score=44.87 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=31.1
Q ss_pred eeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 86 VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 86 ~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
...|.++.+|+|.++++++||. |+.|++|+.+...
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~-V~kG~~L~~ld~~ 77 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDA-VKAGQVLGELDAA 77 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCE-EcCCCEEEEEChH
Confidence 5678999999999999999999 9999999999654
No 171
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=92.58 E-value=1.2 Score=34.01 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=23.0
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDK 202 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K 202 (219)
|+--+++++.||+|++||+|+.+.-+.
T Consensus 79 G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 105 (121)
T TIGR00830 79 GEGFTSHVEEGQRVKKGDPLLEFDLKA 105 (121)
T ss_pred CCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 566789999999999999999986443
No 172
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=92.56 E-value=0.13 Score=35.81 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=21.6
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccC
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK 84 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K 84 (219)
..+.=..++++.||.|++||+|++|=++.
T Consensus 29 D~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 29 DPAVGIELHKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp -TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred CcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence 33444589999999999999999997654
No 173
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=92.52 E-value=0.17 Score=44.58 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=31.8
Q ss_pred eeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 87 MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 87 ~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
..|.++.+|+|.++++++|+. |+.|++|+.++...
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~-VkkGqvLa~Ld~~~ 82 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQL-VKKGQVLFTIDQPR 82 (310)
T ss_pred EEEccCCceEEEEEEeCCcCE-EcCCCEEEEECcHH
Confidence 458999999999999999999 99999999997643
No 174
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.51 E-value=0.12 Score=46.49 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=28.8
Q ss_pred EecCCCeEEEEEEe-cCCCeeeecCcEEEEEeec
Q psy10439 89 FETEEEGILAKILV-PENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 89 i~ap~~G~v~~i~v-~~Gd~~V~~G~~l~~i~~~ 121 (219)
|+||++|+|..+.+ ..|+. |..|++|+.|.+.
T Consensus 274 i~AP~dG~V~~~~~~~~G~~-v~~g~~l~~i~~~ 306 (423)
T TIGR01843 274 IRSPVDGTVQSLKVHTVGGV-VQPGETLMEIVPE 306 (423)
T ss_pred EECCCCcEEEEEEEEccCce-ecCCCeeEEEecC
Confidence 88999999999876 69999 9999999999754
No 175
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=92.45 E-value=0.2 Score=45.56 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=31.5
Q ss_pred eeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 86 VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 86 ~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
...|.++.+|+|.++++++|+. |+.|++|+.|++.
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~-VkkGqvL~~LD~~ 95 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDF-VKEGDVLVTLDPT 95 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCE-ECCCCEEEEECcH
Confidence 6788999999999999999999 9999999999754
No 176
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=92.30 E-value=0.27 Score=44.98 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=27.0
Q ss_pred eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEee
Q psy10439 163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQT 200 (219)
Q Consensus 163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~ 200 (219)
.+..| -.|.|....+.+|+.|..|++|+.|..
T Consensus 255 ~i~AP------~dG~V~~~~~~~G~~v~~g~~l~~i~~ 286 (421)
T TIGR03794 255 RIVSQ------HSGRVIELNYTPGQLVAAGAPLASLEV 286 (421)
T ss_pred eEEcC------CCeEEEEeeCCCCCEecCCCcEEEEEc
Confidence 45566 467899999999999999999999954
No 177
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=92.19 E-value=0.38 Score=43.41 Aligned_cols=56 Identities=11% Similarity=0.092 Sum_probs=42.3
Q ss_pred EeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 64 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 64 ~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
.++.++.-..-.....|+.. -...|.++.+|+|.++++++|+. |+.|++|+.|.+.
T Consensus 42 ~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~-VkkGq~La~ld~~ 97 (385)
T PRK09578 42 TVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQE-VKQGAVLFRIDPA 97 (385)
T ss_pred EEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCE-EcCCCEEEEECCH
Confidence 44444433333444566654 46789999999999999999999 9999999999653
No 178
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=92.15 E-value=0.41 Score=41.66 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=33.7
Q ss_pred eeeEeecCCCeecCCCeEEEEeec--ceeeeeeCCCCeEEEEc
Q psy10439 178 IVKWLKKEGDAVVPGDVLCEIQTD--KAVMSFETEEEGILAKI 218 (219)
Q Consensus 178 i~~~~v~~Gd~V~~g~~l~~ve~~--K~~~~i~a~~~G~v~~i 218 (219)
+....++.||.|++||+|+.+... ....++.||.+|+|..+
T Consensus 229 ~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~ 271 (287)
T cd06251 229 LLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGR 271 (287)
T ss_pred EEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEe
Confidence 567899999999999999999542 23478999999999653
No 179
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=92.15 E-value=0.17 Score=46.28 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=29.4
Q ss_pred eEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439 88 SFETEEEGILAKILVPENTTDVKVGTLIAVMVE 120 (219)
Q Consensus 88 ~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~ 120 (219)
.|+||++|+|..+.+..|+. |..|++|+.|..
T Consensus 255 ~i~AP~dG~V~~~~~~~G~~-v~~g~~l~~i~~ 286 (421)
T TIGR03794 255 RIVSQHSGRVIELNYTPGQL-VAAGAPLASLEV 286 (421)
T ss_pred eEEcCCCeEEEEeeCCCCCE-ecCCCcEEEEEc
Confidence 48899999999999999999 999999999953
No 180
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=92.02 E-value=0.61 Score=40.75 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=32.7
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEecc--CceeeEecCCCeEEEEE
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQTD--KAVMSFETEEEGILAKI 100 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet~--K~~~~i~ap~~G~v~~i 100 (219)
+-+.+..++.||.|++||.|++|-.- ....++.||.+|+|.-+
T Consensus 239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 55667888999999999999988542 22456889999988665
No 181
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=91.96 E-value=0.4 Score=42.05 Aligned_cols=43 Identities=30% Similarity=0.346 Sum_probs=35.8
Q ss_pred ceeeeEeecCCCeecCCCeEEEEee---cceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQT---DKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~---~K~~~~i~a~~~G~v~~i 218 (219)
+-+....++.||.|++||+|.+|=. +....++.||.+|+|-.+
T Consensus 237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~ 282 (298)
T cd06253 237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTL 282 (298)
T ss_pred CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEe
Confidence 3367888999999999999999955 345778999999999754
No 182
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=91.87 E-value=0.26 Score=34.30 Aligned_cols=29 Identities=31% Similarity=0.378 Sum_probs=22.5
Q ss_pred ccceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439 174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDK 202 (219)
Q Consensus 174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K 202 (219)
+.+.-..++++.||.|++||+|+.|-++.
T Consensus 29 D~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 29 DPAVGIELHKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp -TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred CcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence 34555789999999999999999997665
No 183
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.83 E-value=0.17 Score=46.90 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=25.0
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
..|.|.+++|++||.|++||+|+.++.
T Consensus 66 ~~G~v~~i~V~eG~~V~~G~~L~~ld~ 92 (457)
T TIGR01000 66 SNNAIKENYLKENKFVKKGDLLVVYDN 92 (457)
T ss_pred CCcEEEEEEcCCCCEecCCCEEEEECc
Confidence 349999999999999999999999987
No 184
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=91.38 E-value=0.44 Score=42.95 Aligned_cols=43 Identities=30% Similarity=0.438 Sum_probs=33.9
Q ss_pred ceeeeEeecCCCeecCCCeEEEEe----ecceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQ----TDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve----~~K~~~~i~a~~~G~v~~i 218 (219)
+-+....+++||.|++||+|+.|- .+....+|.||.+|+|..+
T Consensus 297 ~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~ 343 (359)
T cd06250 297 GGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFAR 343 (359)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEe
Confidence 446789999999999999999993 2233444699999998754
No 185
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=90.97 E-value=0.34 Score=43.98 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=35.7
Q ss_pred EEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 78 CEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 78 ~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
..++. .-...|.+..+|+|.++++++|+. |+.|++|+.|+..
T Consensus 58 G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~-VkkGqvLa~ld~~ 99 (397)
T PRK15030 58 GRTSA-YRIAEVRPQVSGIILKRNFKEGSD-IEAGVSLYQIDPA 99 (397)
T ss_pred EEEEE-EEEEEEEecCcEEEEEEEcCCCCE-ecCCCEEEEECCH
Confidence 34543 346789999999999999999999 9999999999754
No 186
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=90.80 E-value=0.65 Score=40.40 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=34.9
Q ss_pred ceeeeEeecCCCeecCCCeEEEEee--cceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQT--DKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~--~K~~~~i~a~~~G~v~~i 218 (219)
+-+...+++.||.|++||+|+.+-. .....+|.||.+|+|..+
T Consensus 231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~ 275 (288)
T cd06254 231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYN 275 (288)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 4467888999999999999999933 234678999999998653
No 187
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=90.73 E-value=0.56 Score=41.41 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=34.9
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeec----ceeeeeeCCCCeEEEE
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTD----KAVMSFETEEEGILAK 217 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~----K~~~~i~a~~~G~v~~ 217 (219)
+-+....++.||.|++||+|+.|-.. ....++.||.+|+|..
T Consensus 252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~ 297 (316)
T cd06252 252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAA 297 (316)
T ss_pred CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEE
Confidence 33678889999999999999999553 3466899999999865
No 188
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.66 E-value=0.62 Score=36.14 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=40.3
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceee-EecCCCeEEEEEE
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMS-FETEEEGILAKIL 101 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~-i~ap~~G~v~~i~ 101 (219)
.||-++.--+..|+.|.+||+++-+.|.|..+. +++|.+|++.-+.
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~ 144 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYID 144 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEEe
Confidence 468999999999999999999999999998755 8899999987654
No 189
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=90.27 E-value=0.28 Score=48.01 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=36.0
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEE
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 101 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~ 101 (219)
|.-.+..|++||+|.+||+|++-. .-.+..|.||.+|+|..|.
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 555678999999999999999653 2356889999999999986
No 190
>PF13437 HlyD_3: HlyD family secretion protein
Probab=89.93 E-value=0.71 Score=33.38 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=25.5
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEecc
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTD 83 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~ 83 (219)
..|.|..+.+++|+.|..|+.|+.|...
T Consensus 6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 6 FDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 4599999999999999999999999864
No 191
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=89.72 E-value=0.36 Score=41.68 Aligned_cols=65 Identities=26% Similarity=0.418 Sum_probs=52.8
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEec-c-------------------------------------C-----c-------
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQT-D-------------------------------------K-----A------- 85 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet-~-------------------------------------K-----~------- 85 (219)
..|.|.+++|++||.|++||+|+.++. . + .
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~ 152 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDPSAVLQAALDQAEAQLARAQALLAPAELGDLQREAKLAAEKAAVSQAELDAAQA 152 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 469999999999999999999999987 0 0 0
Q ss_pred ------------------------eeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 86 ------------------------VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 86 ------------------------~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
...+.+|.+|++....+..|+. +..++.+..+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a~~~g~~~~~~~~~g~~-v~~~~~~~~~~~~ 211 (372)
T COG0845 153 LLRAAEALVEAAQAALASAKLNLEYTRITAPISGVIGARLVRVGQL-VSAGQALATIADL 211 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCeeEEeCCCCceEeeeEcCcCce-EcCCCcceEEEEe
Confidence 0118999999999999999999 9988666655433
No 192
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=89.68 E-value=0.72 Score=41.01 Aligned_cols=43 Identities=23% Similarity=0.486 Sum_probs=35.1
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeec----ceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTD----KAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~----K~~~~i~a~~~G~v~~i 218 (219)
+-+....++.||.|++||+|+.|-.- ....++.||.+|+|-.+
T Consensus 263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~ 309 (325)
T TIGR02994 263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAAR 309 (325)
T ss_pred CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEE
Confidence 33677889999999999999999652 24668999999998653
No 193
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=89.50 E-value=0.38 Score=45.11 Aligned_cols=42 Identities=24% Similarity=0.273 Sum_probs=37.1
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEE
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 101 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~ 101 (219)
|.=....|++||+|.+||.|..=+. ....+.||.+|+|.+|.
T Consensus 42 g~~~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 42 GAPGILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred CCccceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 4445789999999999999998775 88889999999999998
No 194
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=89.07 E-value=3.9 Score=33.38 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=55.4
Q ss_pred eEEEEEEEeCCCCeEc--------CCCeE-EEEeccCceeeEecCCCeEE-EEE--EecCCCeeeecCcEEEEEeecCcc
Q psy10439 57 EGTIVKWLKKEGDAVA--------PGDVL-CEIQTDKAVMSFETEEEGIL-AKI--LVPENTTDVKVGTLIAVMVEEGED 124 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~--------~gd~l-~~iet~K~~~~i~ap~~G~v-~~i--~v~~Gd~~V~~G~~l~~i~~~~~~ 124 (219)
.|+|.+....+|+... .++.+ +.+|++...+-+.. ..|.+ .++ ++++|+. +..|+.++.+.-.
T Consensus 80 ~G~v~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~G~v~~v~-v~~~~~~~i~~~~~~g~~-v~kGeeiG~f~fG--- 154 (189)
T TIGR00164 80 GGKVTYVKHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVVQ-IAGFVARRIVCYVKEGEK-VSRGQRIGMIRFG--- 154 (189)
T ss_pred ccEEEEEEEECCeEeecccCcccccceeEEEEEEcCCCCEEEEE-ECeEEccEEEEecCCCCE-EecCcEEEEEecC---
Confidence 5888888888886332 34443 56676543222221 12322 222 4567887 8888888877421
Q ss_pred ccccccccCCCCccccCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEE
Q psy10439 125 WQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCE 197 (219)
Q Consensus 125 ~~~~~~~~~~~a~~a~a~a~a~~~a~~~aa~~~~~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ 197 (219)
+...+.+|. + .+|.+++||+|+-||.|+-
T Consensus 155 -----------------------------------Stv~ll~p~-------~--~~~~v~~G~~V~~G~tli~ 183 (189)
T TIGR00164 155 -----------------------------------SRVDLYLPE-------N--AQAQVKVGEKVTAGETVLA 183 (189)
T ss_pred -----------------------------------CeEEEEEcC-------C--CccccCCCCEEEeceEEEE
Confidence 123455552 1 3678999999999997753
No 195
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=88.16 E-value=1.5 Score=35.88 Aligned_cols=53 Identities=25% Similarity=0.287 Sum_probs=42.0
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEE
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIA 116 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~ 116 (219)
++|.. ++++|+.+++||.+.-++-. .++.+-.|.+ .++.++.|+. |..|+.|.
T Consensus 130 ~~i~~-~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~-V~~G~tli 182 (189)
T TIGR00164 130 RRIVC-YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEK-VTAGETVL 182 (189)
T ss_pred cEEEE-ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCE-EEeceEEE
Confidence 34433 45899999999999999966 6666777765 3788999999 99999764
No 196
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=88.05 E-value=1.3 Score=38.10 Aligned_cols=59 Identities=31% Similarity=0.415 Sum_probs=45.8
Q ss_pred EEEEEEEeCCCCeEcCCCeE--EEEec--cCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439 58 GTIVKWLKKEGDAVAPGDVL--CEIQT--DKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l--~~iet--~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
+-+....++.||.|++||+| ..+-. +-...++.||.+|+|.-+ ...-. |..|+.|+.+.
T Consensus 228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~~--~~~~~-v~~G~~l~~v~ 290 (292)
T PF04952_consen 228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIFI--RESPY-VEQGDALAKVA 290 (292)
T ss_dssp SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEESE--CTSSE-CTTTEEEEEEE
T ss_pred cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEEe--Ccccc-cCCCCeEEEEe
Confidence 55669999999999999999 55532 233568999999999544 46667 88999998774
No 197
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=87.89 E-value=0.47 Score=33.82 Aligned_cols=22 Identities=59% Similarity=1.103 Sum_probs=18.3
Q ss_pred EEEEeCCCCeEcCCCeEEEEec
Q psy10439 61 VKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 61 ~~w~v~~Gd~V~~gd~l~~iet 82 (219)
++|+++.|+.|++|+.|++++-
T Consensus 47 v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 47 VEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EEESS-TT-EEETTCEEEEEEE
T ss_pred EEEEeCCCCCccCCcEEEEEEe
Confidence 4799999999999999999985
No 198
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=87.65 E-value=1.7 Score=34.61 Aligned_cols=29 Identities=41% Similarity=0.486 Sum_probs=25.5
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCc
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA 85 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~ 85 (219)
+|+--+-+|++||+|++||.|+++.-+..
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~I 113 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLDLI 113 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHHHH
Confidence 47777999999999999999999988754
No 199
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=87.51 E-value=1.6 Score=36.13 Aligned_cols=52 Identities=25% Similarity=0.252 Sum_probs=41.9
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEE
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLI 115 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l 115 (219)
+.|.. ++++|+.+++||.+.-++-. .++++--|.+ .++.++.|++ |..|+.+
T Consensus 150 r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~k-V~~Getv 201 (206)
T PRK05305 150 RRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQK-VVAGETV 201 (206)
T ss_pred cEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCE-EEcccEE
Confidence 45544 56899999999999999976 5677777765 3889999999 9999855
No 200
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=87.39 E-value=1.2 Score=38.94 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=33.9
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeec--ceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTD--KAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~--K~~~~i~a~~~G~v~~i 218 (219)
+-+....++.|+.|++||+|+.|-.- ....++.||.+|+|-.+
T Consensus 239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 44678899999999999999999321 12456899999998653
No 201
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.13 E-value=1.3 Score=34.36 Aligned_cols=45 Identities=24% Similarity=0.362 Sum_probs=40.2
Q ss_pred ccceeeeEeecCCCeecCCCeEEEEeecceeee-eeCCCCeEEEEc
Q psy10439 174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMS-FETEEEGILAKI 218 (219)
Q Consensus 174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~-i~a~~~G~v~~i 218 (219)
.+|-+...-..+|+.|.+||.++-+.+-|.... +.+|.+|+|.-|
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi 143 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI 143 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence 467888888999999999999999999998777 789999999765
No 202
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=87.09 E-value=1.9 Score=37.13 Aligned_cols=41 Identities=29% Similarity=0.401 Sum_probs=34.1
Q ss_pred EEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439 78 CEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE 120 (219)
Q Consensus 78 ~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~ 120 (219)
..++. .....+.++..|.+.++++++|+. |+.|+.|+.+++
T Consensus 59 G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~-Vk~Gq~L~~ld~ 99 (372)
T COG0845 59 GRVEA-TRSVEVLARVAGIVAEILVKEGDR-VKKGQLLARLDP 99 (372)
T ss_pred eEEEe-eeeeeEecccccEEEEEEccCCCe-ecCCCEEEEECC
Confidence 34444 334478888999999999999999 999999999976
No 203
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=86.66 E-value=1.1 Score=40.39 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=30.8
Q ss_pred eeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 86 VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 86 ~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
...|-+..+|+|.++++.+++. |+.|++|+.|++.
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~-Vk~Gd~L~~iD~~ 87 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQL-VKKGDVLFRIDPR 87 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCE-ecCCCeEEEECcH
Confidence 4567888899999999999999 9999999999764
No 204
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=86.58 E-value=0.68 Score=35.30 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=24.3
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCc
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA 85 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~ 85 (219)
+|+--+++|++||+|++||.|+++.-+..
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~i 106 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLKAI 106 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHHH
Confidence 46667999999999999999999876543
No 205
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=86.57 E-value=4.7 Score=36.67 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=31.4
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEe-------cCCCeeeecCcEEE
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV-------PENTTDVKVGTLIA 116 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v-------~~Gd~~V~~G~~l~ 116 (219)
+|+-..+.|.+-... +...+..-.+|-|-.+|+|.++.+ +.||. |..||+|.
T Consensus 167 ~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~-VkkGdvLI 225 (385)
T PF06898_consen 167 KGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDT-VKKGDVLI 225 (385)
T ss_pred EeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCCE-ECCCCEEE
Confidence 566666666654433 222234456788888888888765 44555 55555554
No 206
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=86.54 E-value=3.6 Score=40.05 Aligned_cols=28 Identities=36% Similarity=0.462 Sum_probs=24.1
Q ss_pred cceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439 175 EGTIVKWLKKEGDAVVPGDVLCEIQTDK 202 (219)
Q Consensus 175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K 202 (219)
.|+--+.+|++||+|++||+|+++.-++
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~ 605 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDY 605 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 4677889999999999999999996554
No 207
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=86.31 E-value=8.3 Score=31.91 Aligned_cols=92 Identities=18% Similarity=0.219 Sum_probs=55.7
Q ss_pred ceEEEEEEEeCCCCeEcC--------CC-eEEEEeccCce-ee---EecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 56 TEGTIVKWLKKEGDAVAP--------GD-VLCEIQTDKAV-MS---FETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~--------gd-~l~~iet~K~~-~~---i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
-+|+|.++...+|+.... ++ .+..+|+++.. +. +-+-..+.+. .++.+|+. +..|+.++.+.-.
T Consensus 98 ~~G~V~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I~-~~~~~g~~-v~kGe~~G~f~fG- 174 (206)
T PRK05305 98 VSGTVTKVEYRPGKFLNAFLDKASEENERNAVVIETADGGEIGVVQIAGLIARRIV-CYVKEGDE-VERGERFGLIRFG- 174 (206)
T ss_pred ccCEEEEEEEECCeEEecCCCcccccCceEEEEEEeCCCCEEEEEEeCeEEccEEE-EeCCCCCE-EccCcEEeEEecC-
Confidence 368999988888874443 33 33466665321 21 2222222221 24577888 9999988887421
Q ss_pred ccccccccccCCCCccccCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEE
Q psy10439 123 EDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLC 196 (219)
Q Consensus 123 ~~~~~~~~~~~~~a~~a~a~a~a~~~a~~~aa~~~~~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~ 196 (219)
+...+.+|. + .+|.+++||+|+.||.++
T Consensus 175 -------------------------------------StV~l~~p~-------~--~~~~V~~G~kV~~Getvi 202 (206)
T PRK05305 175 -------------------------------------SRVDVYLPL-------G--TEPLVSVGQKVVAGETVL 202 (206)
T ss_pred -------------------------------------CeEEEEEcC-------C--CcccccCCCEEEcccEEE
Confidence 123455552 1 278899999999999664
No 208
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=85.79 E-value=0.83 Score=34.98 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=24.5
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCc
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA 85 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~ 85 (219)
+|+--++++++||+|++||+|+++.-+..
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~~i 106 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLPAI 106 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHHH
Confidence 46777999999999999999999876543
No 209
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=84.09 E-value=1.1 Score=31.91 Aligned_cols=24 Identities=54% Similarity=0.938 Sum_probs=19.1
Q ss_pred eeeEeecCCCeecCCCeEEEEeec
Q psy10439 178 IVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 178 i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
-.+|++++|+.|++||+|++++.+
T Consensus 46 ~v~~~~~dG~~v~~g~~i~~i~G~ 69 (88)
T PF02749_consen 46 EVEWLVKDGDRVEPGDVILEIEGP 69 (88)
T ss_dssp EEEESS-TT-EEETTCEEEEEEEE
T ss_pred EEEEEeCCCCCccCCcEEEEEEeC
Confidence 357999999999999999999753
No 210
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=83.14 E-value=1.1 Score=36.08 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=24.2
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCc
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA 85 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~ 85 (219)
+|+--+++|++||+|++||+|+++.-+..
T Consensus 100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~i 128 (169)
T PRK09439 100 KGEGFKRIAEEGQRVKVGDPIIEFDLPLL 128 (169)
T ss_pred CCCceEEEecCCCEEeCCCEEEEEcHHHH
Confidence 46777899999999999999999876543
No 211
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=82.75 E-value=2.9 Score=34.35 Aligned_cols=58 Identities=26% Similarity=0.337 Sum_probs=43.9
Q ss_pred ceEEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEE
Q psy10439 56 TEGTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIA 116 (219)
Q Consensus 56 ~~g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~ 116 (219)
.-|+|.-+.- ++|+.|++||.+..++= -.++.+--|.+-.. ++.++.|+. |..|+.|+
T Consensus 143 ~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~-~~~v~~g~~-V~~Ge~i~ 201 (202)
T PF02666_consen 143 LVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIF-EWSVKPGQK-VRAGETIG 201 (202)
T ss_pred eeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCcc-ccccCCCCE-EEeeeEEe
Confidence 3467766554 69999999999999986 55555555544333 889999999 99999886
No 212
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=82.31 E-value=0.83 Score=35.36 Aligned_cols=29 Identities=38% Similarity=0.483 Sum_probs=22.2
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCc
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA 85 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~ 85 (219)
+|+--+++|++||+|++||+|+++.-++.
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~i 110 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEKI 110 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHHH
Confidence 46677999999999999999999986554
No 213
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=82.30 E-value=11 Score=42.20 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=37.2
Q ss_pred EEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCe
Q psy10439 62 KWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 107 (219)
Q Consensus 62 ~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~ 107 (219)
.++|+.|+.|++|+.||+.. --+..|-+..+|++.-..+.+|-.
T Consensus 2423 ~l~v~~g~~V~~g~~la~wd--p~~~piisE~~G~v~f~d~~~g~t 2466 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEWD--PYTLPIITEKTGTVSYQDLKDGIS 2466 (2836)
T ss_pred EEEecCCCEecCCCEEEEEc--CCCcceEeecceEEEEEEEeccee
Confidence 57899999999999999875 557778899999998887777765
No 214
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=81.96 E-value=2.2 Score=41.21 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=25.1
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCc
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA 85 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~ 85 (219)
+|+--+.+|++||+|++||.|++++-++.
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~i 570 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLDKI 570 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHHHH
Confidence 57777999999999999999999987644
No 215
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=81.14 E-value=6.7 Score=37.95 Aligned_cols=28 Identities=36% Similarity=0.462 Sum_probs=24.2
Q ss_pred cceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439 175 EGTIVKWLKKEGDAVVPGDVLCEIQTDK 202 (219)
Q Consensus 175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K 202 (219)
+|+--+.++++||+|++||+|+++.-++
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~ 569 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLDK 569 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHHH
Confidence 4777899999999999999999995544
No 216
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=80.34 E-value=6.2 Score=38.29 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=24.0
Q ss_pred cceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439 175 EGTIVKWLKKEGDAVVPGDVLCEIQTDK 202 (219)
Q Consensus 175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K 202 (219)
+|+--+.++++||+|++||+|+++.-++
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 585 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIPA 585 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 4677899999999999999999996544
No 217
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=78.37 E-value=3.3 Score=40.15 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=24.7
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCc
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA 85 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~ 85 (219)
+|+--+.+|++||+|++||+|++++-+..
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~i 586 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIPAI 586 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 46667999999999999999999987643
No 218
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=76.81 E-value=2.2 Score=33.97 Aligned_cols=28 Identities=43% Similarity=0.497 Sum_probs=24.6
Q ss_pred cceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439 175 EGTIVKWLKKEGDAVVPGDVLCEIQTDK 202 (219)
Q Consensus 175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K 202 (219)
+|+--+.++++||+|++||.|+++.-+.
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~ 112 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLDL 112 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHHH
Confidence 4778899999999999999999996654
No 219
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=76.75 E-value=27 Score=36.89 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=31.7
Q ss_pred EEEeCCCCeEcCCCeEEEEecc-------CceeeEecCCCeEEEE
Q psy10439 62 KWLKKEGDAVAPGDVLCEIQTD-------KAVMSFETEEEGILAK 99 (219)
Q Consensus 62 ~w~v~~Gd~V~~gd~l~~iet~-------K~~~~i~ap~~G~v~~ 99 (219)
-++|+.|+.|+.+|+|+++-+. |..-.|.|+.+|.|.-
T Consensus 404 ~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~f 448 (1331)
T PRK02597 404 LLFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVRF 448 (1331)
T ss_pred EEEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEEE
Confidence 3689999999999999999873 4567799999997743
No 220
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=72.75 E-value=4.2 Score=35.36 Aligned_cols=25 Identities=52% Similarity=0.955 Sum_probs=22.1
Q ss_pred EEEEEEeCCCCeEcCCCeEEEEecc
Q psy10439 59 TIVKWLKKEGDAVAPGDVLCEIQTD 83 (219)
Q Consensus 59 ~i~~w~v~~Gd~V~~gd~l~~iet~ 83 (219)
--..|+++.||.|+.||+|++++-+
T Consensus 64 i~~~~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 64 IEIQWLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEecc
Confidence 3458999999999999999999973
No 221
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=71.19 E-value=14 Score=37.87 Aligned_cols=69 Identities=28% Similarity=0.409 Sum_probs=49.2
Q ss_pred EEecCCCCCCCceEEEEEEE----eCCCCeEcCCCeEEEEe-ccCceeeE--ecCCCeEEEEEEecCCCeeeecCcEEEE
Q psy10439 45 EIKMPSLSPTMTEGTIVKWL----KKEGDAVAPGDVLCEIQ-TDKAVMSF--ETEEEGILAKILVPENTTDVKVGTLIAV 117 (219)
Q Consensus 45 ~i~~P~~~~~~~~g~i~~w~----v~~Gd~V~~gd~l~~ie-t~K~~~~i--~ap~~G~v~~i~v~~Gd~~V~~G~~l~~ 117 (219)
-+.+|.|.... +|+ +++||+|..||++.+|. +.-..+.| +.-..|+|+.| +..|++ .+.+.++.
T Consensus 106 g~~~~~l~~~~------~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~~--~~~~~~~~ 176 (1017)
T PRK14698 106 GISAPALPRDK------KWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGEY--TIEEVIAK 176 (1017)
T ss_pred CCCCCCCCCCC------eeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCCc--ceeeEEEE
Confidence 45677776542 564 67899999999999884 44445554 44458999877 457875 66799999
Q ss_pred EeecC
Q psy10439 118 MVEEG 122 (219)
Q Consensus 118 i~~~~ 122 (219)
++...
T Consensus 177 ~~~~~ 181 (1017)
T PRK14698 177 VKTPS 181 (1017)
T ss_pred EEcCC
Confidence 98643
No 222
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=70.52 E-value=8.9 Score=33.07 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=40.1
Q ss_pred EEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 59 TIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 59 ~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
.|..|.. +|+.|++||.+..++-. .++.+--|.+ .+ ++.++.|+. |..|+.|+.|
T Consensus 211 ~i~~~~~-~~~~v~kGee~G~F~fG-STVvllf~~~-~~-~~~v~~g~~-V~~Ge~ig~~ 265 (265)
T PRK03934 211 FIQTYEY-ENLKLKKGEELGNFEMG-STIVLFSQKG-SL-EFNLKAGKS-VKFGESIGEI 265 (265)
T ss_pred ceeeecc-CCceEccccEeeEEccC-CEEEEEEeCC-cc-eEccCCCCE-EEcchhhccC
Confidence 4444543 49999999999999874 5555555543 33 677899999 9999988653
No 223
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=68.38 E-value=4.7 Score=37.38 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=21.4
Q ss_pred CceEEEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 55 MTEGTIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 55 ~~~g~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
++.+-=+.++++.||.|++||+|+.|-+
T Consensus 376 iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~ 403 (437)
T TIGR02643 376 IDYSVGLTDLLPLGDRVEKGEPLAVVHA 403 (437)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEEC
Confidence 3444456888999999999999888863
No 224
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=68.07 E-value=21 Score=32.44 Aligned_cols=68 Identities=26% Similarity=0.451 Sum_probs=45.9
Q ss_pred EecCCCCCCCceEEEEEE----EeCCCCeEcCCCeEEEEe-ccCceeeEec--CCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 46 IKMPSLSPTMTEGTIVKW----LKKEGDAVAPGDVLCEIQ-TDKAVMSFET--EEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 46 i~~P~~~~~~~~g~i~~w----~v~~Gd~V~~gd~l~~ie-t~K~~~~i~a--p~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
+.+|.|... + +| .+++||.|..||.+..+. +.-..+.|-. -..|++..+ +..|+. .+.+.++.+
T Consensus 38 ~~~~~ld~~----~--~w~f~p~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~~--~~~~~~~~~ 108 (369)
T cd01134 38 VNVPALDRD----K--KWDFKPLVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGDY--TVDDVILEV 108 (369)
T ss_pred CCCCCCCCC----C--eeeeEeccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCCe--eEEEEEEEE
Confidence 566766543 2 44 368999999999999885 4335555544 458998774 456775 556778888
Q ss_pred eecC
Q psy10439 119 VEEG 122 (219)
Q Consensus 119 ~~~~ 122 (219)
+..+
T Consensus 109 ~~~g 112 (369)
T cd01134 109 EFDG 112 (369)
T ss_pred EeCC
Confidence 7533
No 225
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=68.02 E-value=5.6 Score=34.61 Aligned_cols=24 Identities=54% Similarity=0.985 Sum_probs=21.5
Q ss_pred eeeEeecCCCeecCCCeEEEEeec
Q psy10439 178 IVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 178 i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
-..|+++.|+.|+.||+|++++.+
T Consensus 65 ~~~~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 65 EIQWLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred EEEEEcCCCCEeCCCCEEEEEecc
Confidence 357999999999999999999865
No 226
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=67.38 E-value=5.1 Score=37.21 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=21.8
Q ss_pred CceEEEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 55 MTEGTIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 55 ~~~g~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
++.+-=+.++++.||.|++||+|+.|-+
T Consensus 377 id~~aGi~l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 377 IDYSVGLTLHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred CCcCCCeEEccCCcCEECCCCeEEEEeC
Confidence 3444456889999999999999998874
No 227
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=67.23 E-value=8.8 Score=32.99 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=39.6
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEE
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~ 117 (219)
|.|. | ..+|+.|++||.+.-++-. .++.+--|.+-.--...+.+|+. |..|+.|+.
T Consensus 202 g~I~-~-~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~-V~~Ge~ig~ 257 (259)
T PRK03140 202 NSIE-L-THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQE-VRLGEKIGT 257 (259)
T ss_pred eEEE-E-ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCE-EEcChhhcc
Confidence 5555 3 4579999999999988877 66666555442222456788888 999988864
No 228
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=66.82 E-value=16 Score=35.15 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=41.5
Q ss_pred EeCCCCeEcCCCeEEEE-eccCceeeE--ecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 64 LKKEGDAVAPGDVLCEI-QTDKAVMSF--ETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 64 ~v~~Gd~V~~gd~l~~i-et~K~~~~i--~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
.+++||.|..||++.++ ||.-..+.| +....|+|.++ +.+|++ .+.+.++.++..+
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~y--tv~~~i~~~~~~g 181 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGNY--TVDDTVLEVEFQG 181 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCCc--eeeeEEEEEeeCC
Confidence 57889999999999977 444445554 44458999876 567875 6789999998533
No 229
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=66.28 E-value=10 Score=36.95 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=24.6
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCc
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA 85 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~ 85 (219)
+|+--+.+|++||+|++||.|+++.-++.
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i 606 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDYL 606 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 46667899999999999999999987654
No 230
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=66.01 E-value=20 Score=34.12 Aligned_cols=57 Identities=30% Similarity=0.320 Sum_probs=42.2
Q ss_pred eCCCCeEcCCCeEEEEe-ccCc-eeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439 65 KKEGDAVAPGDVLCEIQ-TDKA-VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE 123 (219)
Q Consensus 65 v~~Gd~V~~gd~l~~ie-t~K~-~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~ 123 (219)
++.||.|..||+|..|. +.-. ..-++.+..|.+..+....|+. .+.+.|+.++....
T Consensus 122 ~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~y--tv~d~ia~v~~~~g 180 (588)
T COG1155 122 VKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGEY--TVEDVIATVSTEGG 180 (588)
T ss_pred cccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCCc--eeeEEEEEEecCCC
Confidence 47999999999999884 3323 2235566677777888888986 77799999976554
No 231
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=65.49 E-value=45 Score=27.29 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=57.8
Q ss_pred ceEEEEEEEeCCCCeEcC---------------CCeEEEEeccCc---eeeEecCCCeEEEEEEe-cCCCeeeecCcEEE
Q psy10439 56 TEGTIVKWLKKEGDAVAP---------------GDVLCEIQTDKA---VMSFETEEEGILAKILV-PENTTDVKVGTLIA 116 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~---------------gd~l~~iet~K~---~~~i~ap~~G~v~~i~v-~~Gd~~V~~G~~l~ 116 (219)
..|+|.+...-+|+.... ...++.++++.. .+.|-+-..|.|.-..- +.|+. +..|+.++
T Consensus 88 v~G~v~~~~~i~G~~~~v~~~~~~~~~~~~~~NeR~~~~i~~~~G~v~~v~Vga~~v~~I~~~~~~~~g~~-v~kG~e~G 166 (202)
T PF02666_consen 88 VDGRVEEVRYIPGKLLPVNPPALSHIPGLFAENERVVLVIETKFGKVAVVQVGALLVGSIVLTVDPKEGDE-VKKGEELG 166 (202)
T ss_pred CCEEEEEEEEECccccccChHHhhccCCeeEEeeEEEEEEEECCCEEEEEEeccceeceeEEEecccCCCE-EecCcEeC
Confidence 459999999999988642 223334454332 24455555555533332 46777 88888777
Q ss_pred EEeecCccccccccccCCCCccccCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEE
Q psy10439 117 VMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLC 196 (219)
Q Consensus 117 ~i~~~~~~~~~~~~~~~~~a~~a~a~a~a~~~a~~~aa~~~~~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~ 196 (219)
.+.= +. ...+.+|. +.+.+|.+++|++|+-||.|+
T Consensus 167 ~f~f-GS-------------------------------------tvvl~f~~-------~~~~~~~v~~g~~V~~Ge~i~ 201 (202)
T PF02666_consen 167 YFRF-GS-------------------------------------TVVLLFPK-------DKIFEWSVKPGQKVRAGETIG 201 (202)
T ss_pred EEec-CC-------------------------------------eEEEEEeC-------CCccccccCCCCEEEeeeEEe
Confidence 7642 11 22333331 223489999999999999986
No 232
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=65.44 E-value=6.2 Score=36.57 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=24.0
Q ss_pred CceEEEEEEEeCCCCeEcCCCeEEEEeccC
Q psy10439 55 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDK 84 (219)
Q Consensus 55 ~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K 84 (219)
++.+-=+.++++.||.|++||+|+.|-+++
T Consensus 372 id~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 372 IDLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 344555689999999999999999987654
No 233
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=65.32 E-value=5.6 Score=28.20 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=17.7
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEecc
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQTD 83 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet~ 83 (219)
+-+....|+.||.|++||.|..+...
T Consensus 50 ~~l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 50 GHLDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp EEESEESS-TTSEE-TTCEEEEEBSC
T ss_pred eccccccceecccccCCCEEEecCCC
Confidence 33445568899999999999988743
No 234
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=63.75 E-value=14 Score=31.71 Aligned_cols=42 Identities=31% Similarity=0.396 Sum_probs=32.6
Q ss_pred ceeeeEeecCCCeecCCCeE--EEEe--ecceeeeeeCCCCeEEEE
Q psy10439 176 GTIVKWLKKEGDAVVPGDVL--CEIQ--TDKAVMSFETEEEGILAK 217 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l--~~ve--~~K~~~~i~a~~~G~v~~ 217 (219)
+-+....++.||.|++||+| ..+= .+-...++.||.+|+|.-
T Consensus 228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~ 273 (292)
T PF04952_consen 228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIF 273 (292)
T ss_dssp SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEES
T ss_pred cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEE
Confidence 44668899999999999999 5552 223446899999999864
No 235
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=63.53 E-value=8.8 Score=33.40 Aligned_cols=22 Identities=36% Similarity=0.666 Sum_probs=20.9
Q ss_pred EEEEeCCCCeEcCCCeEEEEec
Q psy10439 61 VKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 61 ~~w~v~~Gd~V~~gd~l~~iet 82 (219)
++|+++.|+.|++||+|++++-
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~G 87 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQG 87 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEE
Confidence 5999999999999999999987
No 236
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=63.46 E-value=8.1 Score=35.50 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=23.8
Q ss_pred CceEEEEEEEeCCCCeEcCCCeEEEEecc
Q psy10439 55 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD 83 (219)
Q Consensus 55 ~~~g~i~~w~v~~Gd~V~~gd~l~~iet~ 83 (219)
++.+-=+.++++.||.|++||+|+.|-++
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 44455568999999999999999999754
No 237
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=63.01 E-value=7.8 Score=36.48 Aligned_cols=29 Identities=34% Similarity=0.377 Sum_probs=21.3
Q ss_pred CCceEEEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 54 TMTEGTIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 54 ~~~~g~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
.++.+-=+.++++.||.|++||+|+.|-+
T Consensus 442 p~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a 470 (493)
T TIGR02645 442 PNDKGAGVELHVKVGDQVKKGDPLYTIYA 470 (493)
T ss_pred CcCcCcCeEEeccCCCEecCCCeEEEEEC
Confidence 34445556788888888888888888764
No 238
>PRK04350 thymidine phosphorylase; Provisional
Probab=62.07 E-value=8.5 Score=36.23 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=21.8
Q ss_pred CCceEEEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 54 TMTEGTIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 54 ~~~~g~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
-++.+-=+.++++.||.|++||+|+.|-+
T Consensus 434 p~d~~aGi~l~~k~Gd~V~~G~~l~~i~a 462 (490)
T PRK04350 434 PKDKGAGIDLHVKVGDKVKKGDPLYTIHA 462 (490)
T ss_pred CcCcccCeEEeccCCCEecCCCeEEEEec
Confidence 34455556888888888888888888864
No 239
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=61.47 E-value=15 Score=33.41 Aligned_cols=36 Identities=28% Similarity=0.307 Sum_probs=23.8
Q ss_pred EeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEE
Q psy10439 181 WLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILA 216 (219)
Q Consensus 181 ~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~ 216 (219)
..|++||.|++||+|..=.-.+-...-.-.++|.|.
T Consensus 207 p~Vk~GD~VkkGqvLIsG~i~~~~~~~~v~A~g~V~ 242 (382)
T TIGR02876 207 PVVKKGDVVKKGDLLISGILGKEGKTYTVHAEGEVF 242 (382)
T ss_pred EEEccCCEEcCCCEEEEeEeCCCCceEEEccceEEE
Confidence 568999999999999974443333222335566654
No 240
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=60.84 E-value=8.8 Score=36.20 Aligned_cols=29 Identities=31% Similarity=0.314 Sum_probs=20.6
Q ss_pred CCceEEEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 54 TMTEGTIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 54 ~~~~g~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
.++.+-=+.++++.||.|++||+|+.|-+
T Consensus 443 ~id~~aGi~l~~k~Gd~V~~G~pl~~i~a 471 (500)
T TIGR03327 443 PNDKGAGVYLHVKVGEKVKKGDPLYTIYA 471 (500)
T ss_pred CcCcccCeEEeccCcCEeCCCCeEEEEEC
Confidence 34445556788888888888888888763
No 241
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=59.81 E-value=11 Score=32.91 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=21.2
Q ss_pred EEEEEeCCCCeEcCCCeEEEEec
Q psy10439 60 IVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 60 i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
=++|+++.|+.|++|+.|++++-
T Consensus 62 ~v~~~~~dG~~v~~G~~i~~~~G 84 (284)
T PRK06096 62 TIDDAVSDGSQANAGQRLISAQG 84 (284)
T ss_pred EEEEEeCCCCEeCCCCEEEEEEe
Confidence 35999999999999999999986
No 242
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=59.76 E-value=11 Score=32.80 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=21.3
Q ss_pred EEEEEeCCCCeEcCCCeEEEEec
Q psy10439 60 IVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 60 i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
=++|+++.|+.|+.||.|++++-
T Consensus 66 ~v~~~~~dG~~v~~G~~i~~~~G 88 (281)
T PRK06543 66 TVTLAVADGERFEAGDILATVTG 88 (281)
T ss_pred EEEEEeCCCCEecCCCEEEEEEe
Confidence 45999999999999999999986
No 243
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=59.61 E-value=10 Score=35.21 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=24.9
Q ss_pred ccceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439 174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDK 202 (219)
Q Consensus 174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K 202 (219)
+-+.-+.++++.||.|++||+|+.|-+++
T Consensus 373 d~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 373 DLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred CcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 45566789999999999999999998665
No 244
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=59.10 E-value=13 Score=32.20 Aligned_cols=25 Identities=48% Similarity=0.946 Sum_probs=22.6
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
+--++|+++.|+.|+.|++|++++-
T Consensus 57 ~l~v~~~~~dG~~v~~g~~i~~i~G 81 (268)
T cd01572 57 GIEVEWLVKDGDRVEPGQVLATVEG 81 (268)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEE
Confidence 5556899999999999999999987
No 245
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.87 E-value=12 Score=32.58 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=21.1
Q ss_pred EEEEeCCCCeEcCCCeEEEEec
Q psy10439 61 VKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 61 ~~w~v~~Gd~V~~gd~l~~iet 82 (219)
.+|+++.|+.|++||+|++++-
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~G 89 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLEG 89 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEE
Confidence 6999999999999999999987
No 246
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=57.58 E-value=13 Score=32.80 Aligned_cols=22 Identities=23% Similarity=0.656 Sum_probs=20.8
Q ss_pred EEEEeCCCCeEcCCCeEEEEec
Q psy10439 61 VKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 61 ~~w~v~~Gd~V~~gd~l~~iet 82 (219)
++|+++.|+.|++||.|++++-
T Consensus 87 v~~~~~dG~~v~~G~~i~~i~G 108 (296)
T PRK09016 87 IEWHVDDGDVITANQTLFELTG 108 (296)
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 5899999999999999999987
No 247
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=57.53 E-value=13 Score=32.25 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.6
Q ss_pred EEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 59 TIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 59 ~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
--++|++++|+.|+.||+|++++-
T Consensus 56 ~~v~~~~~dG~~v~~g~~i~~i~G 79 (272)
T cd01573 56 LEVDLAAASGSRVAAGAVLLEAEG 79 (272)
T ss_pred cEEEEEcCCCCEecCCCEEEEEEE
Confidence 345899999999999999999987
No 248
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=57.30 E-value=14 Score=30.97 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=27.3
Q ss_pred EEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 45 ~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
.|+-| ..|.|..+++.+|+.|..|++|+.|-.
T Consensus 90 ~i~AP------~dG~V~~~~~~~G~~v~~g~~l~~i~~ 121 (265)
T TIGR00999 90 EVRSP------FDGYITQKSVTLGDYVAPQAELFRVAD 121 (265)
T ss_pred EEECC------CCeEEEEEEcCCCCEeCCCCceEEEEc
Confidence 46666 459999999999999999999998753
No 249
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=57.02 E-value=13 Score=31.99 Aligned_cols=25 Identities=48% Similarity=0.872 Sum_probs=22.1
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
+-=++|++++|+.|+.|++|++++-
T Consensus 56 ~~~v~~~~~dG~~v~~g~~i~~i~G 80 (269)
T cd01568 56 GIEVEWLVKDGDRVEAGQVLLEVEG 80 (269)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEE
Confidence 3345899999999999999999987
No 250
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.96 E-value=13 Score=32.64 Aligned_cols=23 Identities=30% Similarity=0.741 Sum_probs=21.2
Q ss_pred EEEEEeCCCCeEcCCCeEEEEec
Q psy10439 60 IVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 60 i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
-++|+++.|+.|++|++|++++-
T Consensus 83 ~v~~~~~dG~~v~~G~~i~~~~G 105 (294)
T PRK06978 83 EVTWRYREGDRMTADSTVCELEG 105 (294)
T ss_pred EEEEEcCCCCEeCCCCEEEEEEe
Confidence 46999999999999999999986
No 251
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=56.77 E-value=13 Score=34.55 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.0
Q ss_pred ccceeeeEeecCCCeecCCCeEEEEee
Q psy10439 174 TEGTIVKWLKKEGDAVVPGDVLCEIQT 200 (219)
Q Consensus 174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~ 200 (219)
+.+.-+.++++.||+|++||+|+.|-+
T Consensus 377 D~~aGi~l~~k~Gd~V~~Gd~l~~i~~ 403 (437)
T TIGR02643 377 DYSVGLTDLLPLGDRVEKGEPLAVVHA 403 (437)
T ss_pred CcccCeEeccCCcCEeCCCCeEEEEEC
Confidence 445557899999999999999999973
No 252
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=56.58 E-value=15 Score=31.16 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=36.3
Q ss_pred CCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEE
Q psy10439 68 GDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117 (219)
Q Consensus 68 Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~ 117 (219)
|+.|++||.+.-++-. .++.+--|.+-+--...+..|+. |..|+.|+.
T Consensus 189 g~~v~kGee~G~F~fG-StVvllf~~~~~~~~~~v~~g~k-V~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELG-STVILLFEADAFQLSAHLAVGQE-VKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCC-CeEEEEEeCCCcccChhhccCCE-EEcChhhcc
Confidence 9999999999999874 56666555432223677889998 999998853
No 253
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=56.53 E-value=14 Score=34.03 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=24.2
Q ss_pred cccceeeeEeecCCCeecCCCeEEEEeec
Q psy10439 173 MTEGTIVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 173 ~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
++.+.-+.++++.||.|++||+|+.|-++
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 34555678999999999999999999754
No 254
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.20 E-value=14 Score=32.13 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.9
Q ss_pred EEEEeCCCCeEcCCCeEEEEec
Q psy10439 61 VKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 61 ~~w~v~~Gd~V~~gd~l~~iet 82 (219)
.+|+++.|+.|+.||+|++++-
T Consensus 60 ~~~~~~dG~~v~~g~~i~~i~G 81 (273)
T PRK05848 60 CVFTIKDGERFKKGDILMEIEG 81 (273)
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 5999999999999999999986
No 255
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=56.07 E-value=28 Score=26.29 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=11.9
Q ss_pred EecCCCeEEEEEEecC
Q psy10439 89 FETEEEGILAKILVPE 104 (219)
Q Consensus 89 i~ap~~G~v~~i~v~~ 104 (219)
+.|+.+|+|.+|.-.+
T Consensus 5 ~~As~~G~I~~I~~~e 20 (118)
T PF01333_consen 5 YNASAAGTITKITRKE 20 (118)
T ss_dssp -B-SSSEEEEEEEEET
T ss_pred EcccCCeEEEEEEEcC
Confidence 5789999999998654
No 256
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=56.01 E-value=14 Score=34.41 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=23.1
Q ss_pred ccceeeeEeecCCCeecCCCeEEEEeec
Q psy10439 174 TEGTIVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
+.+.-+.++++.||.|++||+|+.|-++
T Consensus 378 d~~aGi~l~~k~G~~V~~Gd~l~~i~~~ 405 (440)
T PRK05820 378 DYSVGLTLHARLGDRVDAGEPLATLHAD 405 (440)
T ss_pred CcCCCeEEccCCcCEECCCCeEEEEeCC
Confidence 3344578999999999999999999743
No 257
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=55.87 E-value=14 Score=32.65 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.4
Q ss_pred EEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 59 TIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 59 ~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
--++|+++.|+.|++|++|++++-
T Consensus 78 ~~v~~~~~dG~~v~~G~~i~~v~G 101 (308)
T PLN02716 78 LKVEWAAIDGDFVHKGLKFGKVTG 101 (308)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEE
Confidence 345799999999999999999986
No 258
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=55.80 E-value=12 Score=26.49 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=17.7
Q ss_pred eeeEeecCCCeecCCCeEEEEeec
Q psy10439 178 IVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 178 i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
+....++.||.|++||.|..+-..
T Consensus 52 l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 52 LDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp ESEESS-TTSEE-TTCEEEEEBSC
T ss_pred cccccceecccccCCCEEEecCCC
Confidence 445568999999999999998643
No 259
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.62 E-value=14 Score=32.34 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.2
Q ss_pred EEEEEeCCCCeEcCCCeEEEEec
Q psy10439 60 IVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 60 i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
=++|+++.|+.|++||+|++++-
T Consensus 77 ~v~~~~~dG~~v~~g~~i~~i~G 99 (289)
T PRK07896 77 EVLDRVEDGARVPPGQALLTVTA 99 (289)
T ss_pred EEEEEcCCCCEecCCCEEEEEEE
Confidence 45899999999999999999987
No 260
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.33 E-value=14 Score=32.26 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=21.0
Q ss_pred EEEEEeCCCCeEcCCCeEEEEec
Q psy10439 60 IVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 60 i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
-.+|+++.|+.|++||+|++++-
T Consensus 73 ~~~~~~~dG~~v~~g~~i~~~~G 95 (288)
T PRK07428 73 SFTPLVAEGAACESGQVVAEIEG 95 (288)
T ss_pred EEEEEcCCCCEecCCCEEEEEEE
Confidence 34799999999999999999986
No 261
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.82 E-value=15 Score=32.01 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.8
Q ss_pred EEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 59 TIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 59 ~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
--++|+++.|+.|++||+|++++-
T Consensus 70 ~~~~~~~~dG~~v~~g~~i~~i~G 93 (281)
T PRK06106 70 IEMRRHLPDGAAVAPGDVIATISG 93 (281)
T ss_pred eEEEEEeCCCCEEcCCCEEEEEEE
Confidence 446999999999999999999986
No 262
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=54.78 E-value=16 Score=34.45 Aligned_cols=29 Identities=34% Similarity=0.392 Sum_probs=24.3
Q ss_pred cccceeeeEeecCCCeecCCCeEEEEeec
Q psy10439 173 MTEGTIVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 173 ~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
++.+.-+.++++.||.|++||+|+.|-+.
T Consensus 443 ~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 443 NDKGAGVELHVKVGDQVKKGDPLYTIYAE 471 (493)
T ss_pred cCcCcCeEEeccCCCEecCCCeEEEEECC
Confidence 34566678999999999999999999754
No 263
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.49 E-value=15 Score=31.87 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=21.0
Q ss_pred eeEeecCCCeecCCCeEEEEeec
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
..|++++|+.|++||+|++++..
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~G~ 88 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQGP 88 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEEC
Confidence 58999999999999999999754
No 264
>PRK04350 thymidine phosphorylase; Provisional
Probab=54.14 E-value=16 Score=34.34 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=24.5
Q ss_pred cccceeeeEeecCCCeecCCCeEEEEeec
Q psy10439 173 MTEGTIVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 173 ~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
++.+.-+.++++.||.|++||+|+.|-+.
T Consensus 435 ~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~ 463 (490)
T PRK04350 435 KDKGAGIDLHVKVGDKVKKGDPLYTIHAE 463 (490)
T ss_pred cCcccCeEEeccCCCEecCCCeEEEEecC
Confidence 34566678999999999999999999744
No 265
>KOG1668|consensus
Probab=53.80 E-value=7.7 Score=32.79 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=25.3
Q ss_pred eEeecCCCeecCCCeEEEEeecceeee
Q psy10439 180 KWLKKEGDAVVPGDVLCEIQTDKAVMS 206 (219)
Q Consensus 180 ~~~v~~Gd~V~~g~~l~~ve~~K~~~~ 206 (219)
.|++.+|..|++=|..|.||+||.+.+
T Consensus 181 sklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 181 SKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred ccccccccceeeEEEEEEEEcCccccc
Confidence 499999999999999999999998876
No 266
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=53.44 E-value=17 Score=31.72 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.6
Q ss_pred EEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 59 TIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 59 ~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
--++|+++.|+.|+.|+.|++++-
T Consensus 60 ~~~~~~~~dG~~v~~g~~i~~~~G 83 (277)
T TIGR01334 60 ASIDYAVPSGSRALAGTLLLEAKG 83 (277)
T ss_pred CEEEEEeCCCCEeCCCCEEEEEEe
Confidence 345899999999999999999986
No 267
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.14 E-value=17 Score=31.75 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.5
Q ss_pred EEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 59 TIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 59 ~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
--++|+++.|+.|+.|++|++++-
T Consensus 58 ~~v~~~~~dG~~v~~g~~i~~i~G 81 (278)
T PRK08385 58 VKVEVRKRDGEEVKAGEVILELKG 81 (278)
T ss_pred CEEEEEcCCCCEecCCCEEEEEEE
Confidence 345899999999999999999987
No 268
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=52.64 E-value=38 Score=32.69 Aligned_cols=57 Identities=30% Similarity=0.384 Sum_probs=41.4
Q ss_pred EeCCCCeEcCCCeEEEEecc-Cceee--EecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439 64 LKKEGDAVAPGDVLCEIQTD-KAVMS--FETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE 123 (219)
Q Consensus 64 ~v~~Gd~V~~gd~l~~iet~-K~~~~--i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~ 123 (219)
.+++||.|..||.|..|.-. -..+. ++.-..|++.++ +..|+. .+.+.++.+.+...
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~y--tv~~~i~~~~~~~G 182 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGDY--TVDDTIAVLEDEDG 182 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCCc--eeeeEEEEEEccCC
Confidence 47889999999999998644 23333 445558999666 567875 66799999876444
No 269
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=52.60 E-value=18 Score=31.26 Aligned_cols=22 Identities=50% Similarity=1.075 Sum_probs=20.5
Q ss_pred EEEEeCCCCeEcCCCeEEEEec
Q psy10439 61 VKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 61 ~~w~v~~Gd~V~~gd~l~~iet 82 (219)
++|+++.|+.|+.|++|++++-
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~G 77 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVEG 77 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEEE
Confidence 3799999999999999999987
No 270
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=52.53 E-value=20 Score=30.89 Aligned_cols=26 Identities=46% Similarity=0.877 Sum_probs=22.6
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeec
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
+--..|++++|+.|+.||+|+.++..
T Consensus 57 ~l~v~~~~~dG~~v~~g~~i~~i~G~ 82 (268)
T cd01572 57 GIEVEWLVKDGDRVEPGQVLATVEGP 82 (268)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEEC
Confidence 44568999999999999999999864
No 271
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=51.72 E-value=18 Score=34.16 Aligned_cols=29 Identities=31% Similarity=0.329 Sum_probs=24.3
Q ss_pred cccceeeeEeecCCCeecCCCeEEEEeec
Q psy10439 173 MTEGTIVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 173 ~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
++.+.-+.++++.||.|++||+|+.|-+.
T Consensus 444 id~~aGi~l~~k~Gd~V~~G~pl~~i~a~ 472 (500)
T TIGR03327 444 NDKGAGVYLHVKVGEKVKKGDPLYTIYAE 472 (500)
T ss_pred cCcccCeEEeccCcCEeCCCCeEEEEECC
Confidence 34566678999999999999999999744
No 272
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=51.22 E-value=18 Score=31.55 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=21.3
Q ss_pred eeeEeecCCCeecCCCeEEEEeec
Q psy10439 178 IVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 178 i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
-.+|+++.|+.|++|++|+.++..
T Consensus 62 ~v~~~~~dG~~v~~G~~i~~~~G~ 85 (284)
T PRK06096 62 TIDDAVSDGSQANAGQRLISAQGN 85 (284)
T ss_pred EEEEEeCCCCEeCCCCEEEEEEeC
Confidence 358999999999999999999754
No 273
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.12 E-value=19 Score=31.44 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.4
Q ss_pred eeeEeecCCCeecCCCeEEEEeec
Q psy10439 178 IVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 178 i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
-..|+++.|+.|++||+|++++..
T Consensus 66 ~v~~~~~dG~~v~~G~~i~~~~G~ 89 (281)
T PRK06543 66 TVTLAVADGERFEAGDILATVTGP 89 (281)
T ss_pred EEEEEeCCCCEecCCCEEEEEEec
Confidence 458999999999999999999754
No 274
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=51.09 E-value=23 Score=32.16 Aligned_cols=29 Identities=38% Similarity=0.581 Sum_probs=22.4
Q ss_pred CceEEEEEEE-------eCCCCeEcCCCeEE--EEecc
Q psy10439 55 MTEGTIVKWL-------KKEGDAVAPGDVLC--EIQTD 83 (219)
Q Consensus 55 ~~~g~i~~w~-------v~~Gd~V~~gd~l~--~iet~ 83 (219)
-..|.|.++. |++||.|++||+|. .++.+
T Consensus 195 ~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG~i~~~ 232 (385)
T PF06898_consen 195 KKDGVITSIIVRSGTPLVKVGDTVKKGDVLISGVIEIE 232 (385)
T ss_pred CCCCEEEEEEecCCeEEecCCCEECCCCEEEeeeEcCC
Confidence 3578888874 78999999999998 44433
No 275
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.73 E-value=19 Score=31.30 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=21.1
Q ss_pred eeEeecCCCeecCCCeEEEEeec
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
.+|+++.|+.|++||+|++++..
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~G~ 90 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLEGP 90 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEEc
Confidence 68999999999999999999764
No 276
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=49.89 E-value=22 Score=30.99 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=40.0
Q ss_pred EEEEEEeCC----CCeEcCCCeEEEEeccCceeeEecCCCeEEE-EEEecCCCeeeecCcEEEEEe
Q psy10439 59 TIVKWLKKE----GDAVAPGDVLCEIQTDKAVMSFETEEEGILA-KILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 59 ~i~~w~v~~----Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~-~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
.+..|.... |..|++||.+...+=. .++.+--|.. .+. ...+..|+. |..|+.|+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~k-V~~Ge~ig~~~ 286 (288)
T PRK00044 224 IIKRWDYPEAGDGAITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGSV-VRMGQPLAHIT 286 (288)
T ss_pred cceeeeccccccCCCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCCE-EEcChhhcCcc
Confidence 455555432 7799999999998874 5555555543 332 345788998 99999997653
No 277
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=48.90 E-value=11 Score=33.55 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=13.7
Q ss_pred EEeCCCCeEcCCCeEEEEec
Q psy10439 63 WLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 63 w~v~~Gd~V~~gd~l~~iet 82 (219)
++|++||.|++||.|+.+-.
T Consensus 272 i~Vk~Gq~V~~Gq~Ig~~G~ 291 (319)
T PRK10871 272 MLVREQQEVKAGQKIATMGS 291 (319)
T ss_pred cccCCcCEECCCCeEEeEcC
Confidence 45677777777777776653
No 278
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=48.74 E-value=66 Score=36.65 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=17.3
Q ss_pred EEeCCCCeEcCCCeEEEEe
Q psy10439 63 WLKKEGDAVAPGDVLCEIQ 81 (219)
Q Consensus 63 w~v~~Gd~V~~gd~l~~ie 81 (219)
+.|++||.|+.||+|+.+-
T Consensus 2616 l~v~~g~~v~~gdilak~p 2634 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKIP 2634 (2890)
T ss_pred EEecCCCEecccceEeecc
Confidence 6799999999999999874
No 279
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.18 E-value=22 Score=31.32 Aligned_cols=24 Identities=29% Similarity=0.692 Sum_probs=21.3
Q ss_pred eeeEeecCCCeecCCCeEEEEeec
Q psy10439 178 IVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 178 i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
-.+|+++.|+.|++|++|+.++..
T Consensus 83 ~v~~~~~dG~~v~~G~~i~~~~G~ 106 (294)
T PRK06978 83 EVTWRYREGDRMTADSTVCELEGP 106 (294)
T ss_pred EEEEEcCCCCEeCCCCEEEEEEeC
Confidence 468999999999999999999754
No 280
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=47.79 E-value=28 Score=36.74 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=31.8
Q ss_pred EeecCCCeecCCCeEEEEee-------cceeeeeeCCCCeEEE
Q psy10439 181 WLKKEGDAVVPGDVLCEIQT-------DKAVMSFETEEEGILA 216 (219)
Q Consensus 181 ~~v~~Gd~V~~g~~l~~ve~-------~K~~~~i~a~~~G~v~ 216 (219)
.+|+.|+.|+++|+|+++-+ +|..-+|-|+.+|.|.
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~ 447 (1331)
T PRK02597 405 LFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVR 447 (1331)
T ss_pred EEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEE
Confidence 78999999999999999976 3577789999999885
No 281
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=47.63 E-value=24 Score=37.36 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=31.6
Q ss_pred eEeecCCCeecCCCeEEEEee--------cceeeeeeCCCCeEEE
Q psy10439 180 KWLKKEGDAVVPGDVLCEIQT--------DKAVMSFETEEEGILA 216 (219)
Q Consensus 180 ~~~v~~Gd~V~~g~~l~~ve~--------~K~~~~i~a~~~G~v~ 216 (219)
..+|+.|+.|++||+|+++.. +|....|-|..+|.|.
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~ 449 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMH 449 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEE
Confidence 478999999999999999964 4556889999999874
No 282
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.38 E-value=23 Score=31.06 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.5
Q ss_pred eeEeecCCCeecCCCeEEEEeec
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
.+|+++.|+.|++||+|++++.+
T Consensus 74 ~~~~~~dG~~v~~g~~i~~~~G~ 96 (288)
T PRK07428 74 FTPLVAEGAACESGQVVAEIEGP 96 (288)
T ss_pred EEEEcCCCCEecCCCEEEEEEEc
Confidence 46999999999999999999754
No 283
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=47.09 E-value=23 Score=31.19 Aligned_cols=23 Identities=22% Similarity=0.609 Sum_probs=21.0
Q ss_pred eeEeecCCCeecCCCeEEEEeec
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
.+|+++.|+.|++||+|+.++.+
T Consensus 87 v~~~~~dG~~v~~G~~i~~i~G~ 109 (296)
T PRK09016 87 IEWHVDDGDVITANQTLFELTGP 109 (296)
T ss_pred EEEEcCCCCEecCCCEEEEEEEC
Confidence 58999999999999999999764
No 284
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.78 E-value=23 Score=31.00 Aligned_cols=24 Identities=25% Similarity=0.298 Sum_probs=21.3
Q ss_pred eeeEeecCCCeecCCCeEEEEeec
Q psy10439 178 IVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 178 i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
-.+|+++.|+.|++||+|++++.+
T Consensus 77 ~v~~~~~dG~~v~~g~~i~~i~G~ 100 (289)
T PRK07896 77 EVLDRVEDGARVPPGQALLTVTAP 100 (289)
T ss_pred EEEEEcCCCCEecCCCEEEEEEEC
Confidence 357999999999999999999754
No 285
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=46.59 E-value=25 Score=30.36 Aligned_cols=24 Identities=46% Similarity=0.789 Sum_probs=21.3
Q ss_pred eeeEeecCCCeecCCCeEEEEeec
Q psy10439 178 IVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 178 i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
-..|++++|+.|+.|++|+.++.+
T Consensus 58 ~v~~~~~dG~~v~~g~~i~~i~G~ 81 (269)
T cd01568 58 EVEWLVKDGDRVEAGQVLLEVEGP 81 (269)
T ss_pred EEEEEeCCCCEecCCCEEEEEEEc
Confidence 457999999999999999999864
No 286
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=46.20 E-value=24 Score=30.53 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.2
Q ss_pred eeeEeecCCCeecCCCeEEEEeec
Q psy10439 178 IVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 178 i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
-..|++++|+.|+.||+|+.++.+
T Consensus 57 ~v~~~~~dG~~v~~g~~i~~i~G~ 80 (272)
T cd01573 57 EVDLAAASGSRVAAGAVLLEAEGP 80 (272)
T ss_pred EEEEEcCCCCEecCCCEEEEEEEc
Confidence 357999999999999999999864
No 287
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=45.56 E-value=26 Score=31.04 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.6
Q ss_pred eeeeEeecCCCeecCCCeEEEEeec
Q psy10439 177 TIVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 177 ~i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
--.+|+++.|+.|++|++|+.++..
T Consensus 78 ~~v~~~~~dG~~v~~G~~i~~v~G~ 102 (308)
T PLN02716 78 LKVEWAAIDGDFVHKGLKFGKVTGP 102 (308)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEEC
Confidence 3457999999999999999999754
No 288
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.37 E-value=26 Score=30.57 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=21.7
Q ss_pred eeeeEeecCCCeecCCCeEEEEeec
Q psy10439 177 TIVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 177 ~i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
--.+|+++.|+.|++||+|++++..
T Consensus 70 ~~~~~~~~dG~~v~~g~~i~~i~G~ 94 (281)
T PRK06106 70 IEMRRHLPDGAAVAPGDVIATISGP 94 (281)
T ss_pred eEEEEEeCCCCEEcCCCEEEEEEEC
Confidence 3468999999999999999999754
No 289
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=45.13 E-value=40 Score=28.98 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=30.1
Q ss_pred eCCCCeEcC-CCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEE
Q psy10439 65 KKEGDAVAP-GDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117 (219)
Q Consensus 65 v~~Gd~V~~-gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~ 117 (219)
+..|+.|.+ |++|+... ..++++|.+|.+. +-.... +.+|+..+.
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~vl---~~p~~~-~~~G~~~~~ 271 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCVL---IMPSLR-PLRGQTAVR 271 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEEE---EccCCC-CCCCceeee
Confidence 456888888 99988832 3788899998653 234444 556665543
No 290
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.59 E-value=27 Score=30.36 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=21.0
Q ss_pred eeEeecCCCeecCCCeEEEEeec
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
..|+++.|+.|+.||+|+.++..
T Consensus 60 ~~~~~~dG~~v~~g~~i~~i~G~ 82 (273)
T PRK05848 60 CVFTIKDGERFKKGDILMEIEGD 82 (273)
T ss_pred EEEEcCCCCEecCCCEEEEEEEC
Confidence 58999999999999999999754
No 291
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=44.03 E-value=28 Score=30.31 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=21.3
Q ss_pred eeeEeecCCCeecCCCeEEEEeec
Q psy10439 178 IVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 178 i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
-..|+++.|+.|+.|++|++++.+
T Consensus 61 ~~~~~~~dG~~v~~g~~i~~~~G~ 84 (277)
T TIGR01334 61 SIDYAVPSGSRALAGTLLLEAKGS 84 (277)
T ss_pred EEEEEeCCCCEeCCCCEEEEEEec
Confidence 458999999999999999999754
No 292
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=43.24 E-value=60 Score=31.30 Aligned_cols=53 Identities=30% Similarity=0.376 Sum_probs=39.7
Q ss_pred eCCCCeEcCCCeEEEE-eccCceeeE--ecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439 65 KKEGDAVAPGDVLCEI-QTDKAVMSF--ETEEEGILAKILVPENTTDVKVGTLIAVMVE 120 (219)
Q Consensus 65 v~~Gd~V~~gd~l~~i-et~K~~~~i--~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~ 120 (219)
++.||.|..||.+..+ |+.-..+.| +.-..|+|..+ +.+|++ .+.+.++.++.
T Consensus 121 ~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~~--~~~~~v~~~~~ 176 (578)
T TIGR01043 121 VKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGDY--TVEDTIAVVDT 176 (578)
T ss_pred cccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCCc--eeeeeEEEEec
Confidence 7899999999999988 444444443 34469998777 567875 66788888875
No 293
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.71 E-value=30 Score=30.17 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=21.3
Q ss_pred eeeEeecCCCeecCCCeEEEEeec
Q psy10439 178 IVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 178 i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
-..|+++.|+.|+.|++|+.++..
T Consensus 59 ~v~~~~~dG~~v~~g~~i~~i~G~ 82 (278)
T PRK08385 59 KVEVRKRDGEEVKAGEVILELKGN 82 (278)
T ss_pred EEEEEcCCCCEecCCCEEEEEEEC
Confidence 357999999999999999999864
No 294
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=42.37 E-value=31 Score=31.88 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=24.0
Q ss_pred cccceeeeEeecCCCeecCCCeEEEEee
Q psy10439 173 MTEGTIVKWLKKEGDAVVPGDVLCEIQT 200 (219)
Q Consensus 173 ~~~~~i~~~~v~~Gd~V~~g~~l~~ve~ 200 (219)
++-+.-+..+++.||.|++||+|+.+-+
T Consensus 373 iD~~aGi~l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 373 IDKGAGIYLHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred cCcccceEEEecCCCeeccCCeEEEEec
Confidence 3455667899999999999999999987
No 295
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=41.31 E-value=42 Score=35.70 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=32.1
Q ss_pred EEEeCCCCeEcCCCeEEEEec--------cCceeeEecCCCeEEEEEE
Q psy10439 62 KWLKKEGDAVAPGDVLCEIQT--------DKAVMSFETEEEGILAKIL 101 (219)
Q Consensus 62 ~w~v~~Gd~V~~gd~l~~iet--------~K~~~~i~ap~~G~v~~i~ 101 (219)
.++|+.||.|++||+|+++.. .|....|-+..+|.+.--.
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~~~~ 452 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMHWST 452 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEEccc
Confidence 478999999999999999986 3445788899999865443
No 296
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=40.20 E-value=33 Score=30.79 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=21.4
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
.+++ |++++|+.|..|+++++|+.
T Consensus 69 ~~~v--~~~~dG~~v~~g~~il~i~G 92 (343)
T PRK08662 69 PVDV--YALPEGTLFDPKEPVMRIEG 92 (343)
T ss_pred CcEE--EEeCCCCEecCCceEEEEEE
Confidence 3564 89999999999999999997
No 297
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=40.04 E-value=36 Score=29.35 Aligned_cols=23 Identities=48% Similarity=0.991 Sum_probs=20.6
Q ss_pred eeEeecCCCeecCCCeEEEEeec
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
..|+++.|+.|+.||+|+.++..
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~G~ 78 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVEGP 78 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEEEc
Confidence 37999999999999999999754
No 298
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.90 E-value=35 Score=29.97 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.3
Q ss_pred EEEEEEe--CCCCeEcCCCeEEEEec
Q psy10439 59 TIVKWLK--KEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 59 ~i~~w~v--~~Gd~V~~gd~l~~iet 82 (219)
.-..|++ +.|+.|++|+.|++++-
T Consensus 71 ~~~~~~~~~~dG~~v~~G~~i~~v~G 96 (290)
T PRK06559 71 VTFQNPHQFKDGDRLTSGDLVLEIIG 96 (290)
T ss_pred EEEEEeecCCCCCEecCCCEEEEEEE
Confidence 4457888 99999999999999987
No 299
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=39.60 E-value=34 Score=31.57 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=10.2
Q ss_pred EEecCCCeeeecCcEEEEEee
Q psy10439 100 ILVPENTTDVKVGTLIAVMVE 120 (219)
Q Consensus 100 i~v~~Gd~~V~~G~~l~~i~~ 120 (219)
++.+.||. |+.|++|++|-.
T Consensus 381 l~kk~ge~-Vk~Gd~l~tiya 400 (435)
T COG0213 381 LHKKLGEK-VKKGDPLATIYA 400 (435)
T ss_pred EEecCCCe-eccCCeEEEEec
Confidence 34445555 555555555543
No 300
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=34.71 E-value=28 Score=31.02 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=17.2
Q ss_pred eEeecCCCeecCCCeEEEEe
Q psy10439 180 KWLKKEGDAVVPGDVLCEIQ 199 (219)
Q Consensus 180 ~~~v~~Gd~V~~g~~l~~ve 199 (219)
+++|++||.|++||.|+.+-
T Consensus 271 ~i~Vk~Gq~V~~Gq~Ig~~G 290 (319)
T PRK10871 271 TMLVREQQEVKAGQKIATMG 290 (319)
T ss_pred ccccCCcCEECCCCeEEeEc
Confidence 35689999999999999873
No 301
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=32.82 E-value=54 Score=29.57 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.0
Q ss_pred EEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 59 TIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 59 ~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
.+..|.+++|+.|..|++|++|+.
T Consensus 71 ~~~i~a~~eG~~v~~gepvl~i~G 94 (352)
T PRK07188 71 KLKIRYLKDGDIINPFETVLEIEG 94 (352)
T ss_pred ceEEEEcCCCCEecCCCEEEEEEE
Confidence 466899999999999999999997
No 302
>KOG1668|consensus
Probab=32.78 E-value=27 Score=29.60 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=25.1
Q ss_pred EEEeCCCCeEcCCCeEEEEeccCceee
Q psy10439 62 KWLKKEGDAVAPGDVLCEIQTDKAVMS 88 (219)
Q Consensus 62 ~w~v~~Gd~V~~gd~l~~iet~K~~~~ 88 (219)
.|+|..|..+++=|+.|.||.||.+.+
T Consensus 181 sklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 181 SKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred ccccccccceeeEEEEEEEEcCccccc
Confidence 599999999999999999999998765
No 303
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=32.27 E-value=79 Score=28.75 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=25.8
Q ss_pred eecCCCeecCCCeEEEEe-ecceeeeeeC--CCCeEEEEc
Q psy10439 182 LKKEGDAVVPGDVLCEIQ-TDKAVMSFET--EEEGILAKI 218 (219)
Q Consensus 182 ~v~~Gd~V~~g~~l~~ve-~~K~~~~i~a--~~~G~v~~i 218 (219)
.+++||.|..||.+..|. +.-....|.. ...|+|+.|
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~ 93 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI 93 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE
Confidence 468999999999999985 3223333433 448888776
No 304
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.81 E-value=56 Score=28.70 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.2
Q ss_pred eeeeEee--cCCCeecCCCeEEEEeec
Q psy10439 177 TIVKWLK--KEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 177 ~i~~~~v--~~Gd~V~~g~~l~~ve~~ 201 (219)
....|++ +.|+.|++||+|++++..
T Consensus 71 ~~~~~~~~~~dG~~v~~G~~i~~v~G~ 97 (290)
T PRK06559 71 VTFQNPHQFKDGDRLTSGDLVLEIIGS 97 (290)
T ss_pred EEEEEeecCCCCCEecCCCEEEEEEEC
Confidence 3457888 999999999999999754
No 305
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=31.56 E-value=56 Score=27.93 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=23.3
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEecc
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQTD 83 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet~ 83 (219)
+....|.+++|+.|..|+++++|+-.
T Consensus 49 ~~~~~~~~~eG~~v~~g~~vl~i~G~ 74 (281)
T cd00516 49 GPLVILAVPEGTVVEPGEPLLTIEGP 74 (281)
T ss_pred CceEEEECCCCCEecCCCEEEEEEEc
Confidence 56779999999999999999999973
No 306
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]
Probab=29.88 E-value=36 Score=28.55 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=17.7
Q ss_pred EEEeCCCCeEcCCCeEEEEe
Q psy10439 62 KWLKKEGDAVAPGDVLCEIQ 81 (219)
Q Consensus 62 ~w~v~~Gd~V~~gd~l~~ie 81 (219)
+..|++||.|++||.|..+-
T Consensus 215 ~~~V~~G~~V~~G~~Ig~~G 234 (277)
T COG0739 215 SILVKEGQKVKAGQVIGYVG 234 (277)
T ss_pred hhccCCCCEeccCCEEEEec
Confidence 57889999999999999874
No 307
>PF09923 DUF2155: Uncharacterized protein conserved in bacteria (DUF2155); InterPro: IPR019225 This entry contains various hypothetical prokaryotic proteins that have no known function.
Probab=28.42 E-value=1.2e+02 Score=21.73 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=36.0
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 106 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd 106 (219)
..|++..+.++.|+.+.-|.....+..-........|...-...+.+.+..
T Consensus 9 itg~~~~~~v~~G~~~~~g~L~i~~~~C~~r~p~~~p~~~Af~~v~~~~~~ 59 (90)
T PF09923_consen 9 ITGRVTDFEVPVGETVQFGNLTITLRACVSRPPTENPDTDAFVQVTIREQG 59 (90)
T ss_pred ccCeEEEEEEcCCCEEEEccEEEEhhheecCCCCCCcCccceEEEEEcCCC
Confidence 358889999999999999988777766655555556666666666554443
No 308
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=27.33 E-value=78 Score=28.61 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=40.2
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEeccCceee-EecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMS-FETEEEGILAKILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~-i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
|.+..|.-..+..|++||.+..-+-.-+.+- .+++. .+ +..++.|+. |..|+.|+.+.
T Consensus 281 ~~~~~~~y~~~~~v~KGeElG~F~~GSTVVllFe~~~--~~-~~~l~~g~~-Vr~Gq~lg~~~ 339 (353)
T PTZ00403 281 GDINTKIYDSYKSVEVGDEVGEFRMGSSIVVIFENKK--NF-SWNVKPNQT-VSVGQRLGGVG 339 (353)
T ss_pred CcceeeecCCCCcccccceeeEeccCCeEEEEEeCCC--cC-CcccCCCCE-EEeeeeccccC
Confidence 4455566666789999999998886443332 33443 22 556789998 99999997663
No 309
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=27.01 E-value=1.6e+02 Score=26.71 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=35.2
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEe-------cCCCeeeecCcEEEE
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV-------PENTTDVKVGTLIAV 117 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v-------~~Gd~~V~~G~~l~~ 117 (219)
+|+-..+.|.+...... .+.+..-.+|-|-.+|+|.++.+ +.||. |..||.|..
T Consensus 163 ~GTrl~i~v~Ek~~~p~------~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~-VkkGqvLIs 223 (382)
T TIGR02876 163 RGTTLVIKVVEKQEPKP------VLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDV-VKKGDLLIS 223 (382)
T ss_pred EeEEEEEEEEecCCCCC------ccccCCCccEEECCCCEEEEEEEcCCeEEEccCCE-EcCCCEEEE
Confidence 56666777766543111 11223346789999999999876 56777 888887763
No 310
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=26.92 E-value=94 Score=32.74 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=31.0
Q ss_pred EeecCCCeecCCCeEEEEee-------cceeeeeeCCCCeEEE
Q psy10439 181 WLKKEGDAVVPGDVLCEIQT-------DKAVMSFETEEEGILA 216 (219)
Q Consensus 181 ~~v~~Gd~V~~g~~l~~ve~-------~K~~~~i~a~~~G~v~ 216 (219)
.+|+.|+.|+++|+|+++-+ +|..-+|-|..+|.|.
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~k~i~s~~~Ge~~ 447 (1227)
T TIGR02388 405 LFVEDGQTVDAGQLLAEIALGAVRKSTEKATKDVASDLAGEVK 447 (1227)
T ss_pred EEEECCCEEecCcEEEEeccCCcccceeEEEEEEecCCCceEE
Confidence 78999999999999999975 3667789999999764
No 311
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=26.65 E-value=79 Score=36.01 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=30.7
Q ss_pred eeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEE
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILA 216 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~ 216 (219)
+..+|+.|+.|++||+||+. |=-+..|-+..+|+|.
T Consensus 2422 a~l~v~~g~~V~~g~~la~w--dp~~~piisE~~G~v~ 2457 (2836)
T PRK14844 2422 AKLYVDEGGSVKIGDKVAEW--DPYTLPIITEKTGTVS 2457 (2836)
T ss_pred cEEEecCCCEecCCCEEEEE--cCCCcceEeecceEEE
Confidence 45889999999999999988 5667778889999875
No 312
>PRK11649 putative peptidase; Provisional
Probab=26.34 E-value=44 Score=31.03 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=11.2
Q ss_pred EEeCCCCeEcCCCeEEEEe
Q psy10439 63 WLKKEGDAVAPGDVLCEIQ 81 (219)
Q Consensus 63 w~v~~Gd~V~~gd~l~~ie 81 (219)
+.|+.||.|++||+|+.+-
T Consensus 365 ~~v~~Gq~V~~Gq~IG~vG 383 (439)
T PRK11649 365 LLVKPGQKVKRGDRIALSG 383 (439)
T ss_pred ccCCCcCEECCCCeEEEEc
Confidence 3466666666666666543
No 313
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=26.14 E-value=69 Score=28.71 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=19.6
Q ss_pred EeecCCCeecCCCeEEEEeec
Q psy10439 181 WLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 181 ~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
|++++|+.|..|++|+.+|..
T Consensus 73 ~~~~dG~~v~~g~~il~i~G~ 93 (343)
T PRK08662 73 YALPEGTLFDPKEPVMRIEGP 93 (343)
T ss_pred EEeCCCCEecCCceEEEEEEc
Confidence 899999999999999999864
No 314
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=25.50 E-value=86 Score=27.51 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.1
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
.++ . .+++|+.|..|++|++|+.
T Consensus 53 ~~i-~-~~~dG~~v~~g~~i~~i~G 75 (302)
T cd01571 53 VKV-Y-ALPEGTIFNPKEPVLRIEG 75 (302)
T ss_pred eEE-E-EeCCCCEECCCCcEEEEEe
Confidence 566 3 5999999999999999997
No 315
>PRK11637 AmiB activator; Provisional
Probab=25.23 E-value=30 Score=31.69 Aligned_cols=19 Identities=21% Similarity=0.344 Sum_probs=11.6
Q ss_pred EeCCCCeEcCCCeEEEEec
Q psy10439 64 LKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 64 ~v~~Gd~V~~gd~l~~iet 82 (219)
.|++||.|..||+|+.+-+
T Consensus 382 ~v~~G~~V~~G~~ig~~g~ 400 (428)
T PRK11637 382 LVSVGAQVRAGQPIALVGS 400 (428)
T ss_pred CCCCcCEECCCCeEEeecC
Confidence 3566666666666666543
No 316
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=24.78 E-value=87 Score=28.26 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.5
Q ss_pred eeeEeecCCCeecCCCeEEEEeec
Q psy10439 178 IVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 178 i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
+..|.+++|+.|..|++|+.+|..
T Consensus 72 ~~i~a~~eG~~v~~gepvl~i~G~ 95 (352)
T PRK07188 72 LKIRYLKDGDIINPFETVLEIEGP 95 (352)
T ss_pred eEEEEcCCCCEecCCCEEEEEEEc
Confidence 567899999999999999999864
No 317
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.78 E-value=1.3e+02 Score=25.12 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=52.4
Q ss_pred EecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCc--------------eee-EecCCCeEEEEEEecCCCeeee
Q psy10439 46 IKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKA--------------VMS-FETEEEGILAKILVPENTTDVK 110 (219)
Q Consensus 46 i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~--------------~~~-i~ap~~G~v~~i~v~~Gd~~V~ 110 (219)
+.-+.+|++++---|.+-.+..||.+.-|+.|.+|---.. ... -.+...|+..+++ ++| . |.
T Consensus 76 l~pg~fGENltt~Gl~e~~l~iGdr~riG~allEVSqpR~PC~~l~~~~~~~~~~~~~~~~G~~G~y~RVL-~~G-~-v~ 152 (210)
T COG2258 76 LQPGAFGENLTTSGLDEANLCIGDRFRIGEALLEVTQPRKPCSKLNKRFGIPDLAKRFQQTGRTGWYARVL-EEG-K-VR 152 (210)
T ss_pred CCcccccCceeecCcchhhccccCEEEeccEEEEecCCCCchHHHHHhcCCccHHHHhhccCcccEEEEEc-ccc-e-ec
Confidence 4556789998888888999999999999999999865211 111 1234467776665 334 5 89
Q ss_pred cCcEEEEEeecC
Q psy10439 111 VGTLIAVMVEEG 122 (219)
Q Consensus 111 ~G~~l~~i~~~~ 122 (219)
.|++|-.+....
T Consensus 153 ~gD~l~l~~r~~ 164 (210)
T COG2258 153 AGDPLKLIPRPS 164 (210)
T ss_pred CCCceEEecCCC
Confidence 999998775443
No 318
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]
Probab=22.49 E-value=58 Score=27.24 Aligned_cols=19 Identities=37% Similarity=0.503 Sum_probs=17.5
Q ss_pred eEeecCCCeecCCCeEEEE
Q psy10439 180 KWLKKEGDAVVPGDVLCEI 198 (219)
Q Consensus 180 ~~~v~~Gd~V~~g~~l~~v 198 (219)
...|++|+.|++||.|..+
T Consensus 215 ~~~V~~G~~V~~G~~Ig~~ 233 (277)
T COG0739 215 SILVKEGQKVKAGQVIGYV 233 (277)
T ss_pred hhccCCCCEeccCCEEEEe
Confidence 6789999999999999987
No 319
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=22.46 E-value=5.1e+02 Score=30.21 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=34.9
Q ss_pred EEEEeCCCCeEcCC-----------CeEEEEeccCceeeEecCCCeEEEEEEecCCCe
Q psy10439 61 VKWLKKEGDAVAPG-----------DVLCEIQTDKAVMSFETEEEGILAKILVPENTT 107 (219)
Q Consensus 61 ~~w~v~~Gd~V~~g-----------d~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~ 107 (219)
..++|..|+.|++| +.|++- |--...|-|..+|+|.-..+.+|-.
T Consensus 2513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w--dp~~~pii~e~~G~v~f~d~~~g~t 2568 (2890)
T PRK09603 2513 SEILIDDNSEVSANSVISKPTTNTFKTIATW--DPYNTPIIADFKGKVSFVDIIAGVT 2568 (2890)
T ss_pred ccccccccccccCCccccccccccccEEEEe--CCCCCcEEeecceEEEEEeeecCce
Confidence 45789999999999 666654 3556778899999998877777765
No 320
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=21.38 E-value=1.3e+02 Score=25.41 Aligned_cols=73 Identities=12% Similarity=0.202 Sum_probs=51.4
Q ss_pred EecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEecc-----Cce----------eeEecCCCeEEEEEEecCCCeeee
Q psy10439 46 IKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTD-----KAV----------MSFETEEEGILAKILVPENTTDVK 110 (219)
Q Consensus 46 i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~-----K~~----------~~i~ap~~G~v~~i~v~~Gd~~V~ 110 (219)
+....+|++++---+.+-.|-.||.+.-|+.+++|-.- |.. .-.+....|+..+++ ++| . |.
T Consensus 79 l~~G~fGENLtv~Gl~e~~v~IGD~~riG~avleVsqpR~PC~kl~~r~~~~~~~~~~~~~g~~G~Y~RVL-~~G-~-V~ 155 (223)
T PRK11536 79 FVAPAFGENLSTDGLTESNVFIGDIFRWGEALIQVTQPRSPCYKLNYHFDISDIAQLMQNSGKCGWLYRVI-APG-K-VS 155 (223)
T ss_pred cCCCCccCCEEecCcChhhCCccCEEEECCEEEEEecCCCCCCchhhhccchhHHHHHHhhCCcEEEEEEE-CCc-E-Ec
Confidence 45567888876656777889999999999998888542 111 112345668876665 444 5 99
Q ss_pred cCcEEEEEeec
Q psy10439 111 VGTLIAVMVEE 121 (219)
Q Consensus 111 ~G~~l~~i~~~ 121 (219)
.|+.|..++..
T Consensus 156 ~GD~v~l~~r~ 166 (223)
T PRK11536 156 ADAPLELVSRV 166 (223)
T ss_pred CCCEEEEEeCC
Confidence 99999888654
No 321
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=21.34 E-value=1.2e+02 Score=32.01 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=30.8
Q ss_pred EEEeCCCCeEcCCCeEEEEecc-------CceeeEecCCCeEEEE
Q psy10439 62 KWLKKEGDAVAPGDVLCEIQTD-------KAVMSFETEEEGILAK 99 (219)
Q Consensus 62 ~w~v~~Gd~V~~gd~l~~iet~-------K~~~~i~ap~~G~v~~ 99 (219)
-++|+.|+.|+.+|+|+++-+. |..-.|.+..+|-+..
T Consensus 404 ~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~k~i~s~~~Ge~~~ 448 (1227)
T TIGR02388 404 LLFVEDGQTVDAGQLLAEIALGAVRKSTEKATKDVASDLAGEVKF 448 (1227)
T ss_pred EEEEECCCEEecCcEEEEeccCCcccceeEEEEEEecCCCceEEe
Confidence 3689999999999999999863 4556788888886654
No 322
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=20.92 E-value=1.1e+02 Score=26.17 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=24.5
Q ss_pred ecCCCeecC-CCeEEEEeecceeeeeeCCCCeEEE
Q psy10439 183 KKEGDAVVP-GDVLCEIQTDKAVMSFETEEEGILA 216 (219)
Q Consensus 183 v~~Gd~V~~-g~~l~~ve~~K~~~~i~a~~~G~v~ 216 (219)
+..|+.+.+ |++|+..- ..++.+|++|.|.
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~vl 256 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCVL 256 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEEE
Confidence 456899999 99999942 3889999999774
No 323
>PHA01474 nonstructural protein
Probab=20.57 E-value=44 Score=20.61 Aligned_cols=17 Identities=24% Similarity=-0.019 Sum_probs=12.2
Q ss_pred Ccchhhhhhcc-cccccc
Q psy10439 1 MSFLVRSRLTK-LASKFI 17 (219)
Q Consensus 1 ~~~~~~s~~~~-~~~~~~ 17 (219)
|.|+..||-|+ +|++.+
T Consensus 1 mwriyesrttyeysrfss 18 (52)
T PHA01474 1 MWRIYESRTTYEYSRFSS 18 (52)
T ss_pred CceEeeccceeeehhhhh
Confidence 77888899998 554433
Done!