Query psy10439
Match_columns 219
No_of_seqs 277 out of 2255
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 18:11:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y8o_B Dihydrolipoyllysine-res 99.9 2.2E-21 7.4E-26 148.4 12.1 96 30-126 14-110 (128)
2 2dne_A Dihydrolipoyllysine-res 99.9 1.8E-21 6.3E-26 144.9 9.7 88 39-127 3-91 (108)
3 2dnc_A Pyruvate dehydrogenase 99.8 2.7E-20 9.3E-25 136.2 10.5 84 39-123 3-87 (98)
4 3crk_C Dihydrolipoyllysine-res 99.8 5E-20 1.7E-24 131.8 11.4 82 40-122 2-84 (87)
5 1k8m_A E2 component of branche 99.8 2.7E-19 9.4E-24 129.6 9.9 79 42-121 3-81 (93)
6 1ghj_A E2, E2, the dihydrolipo 99.8 1.2E-18 4E-23 122.2 8.4 76 44-120 2-77 (79)
7 3dva_I Dihydrolipoyllysine-res 99.8 7E-20 2.4E-24 165.9 0.0 82 42-124 1-82 (428)
8 1qjo_A Dihydrolipoamide acetyl 99.7 4.8E-18 1.6E-22 119.2 8.4 77 42-121 1-77 (80)
9 1pmr_A Dihydrolipoyl succinylt 99.7 1.3E-19 4.5E-24 127.5 -0.5 77 42-119 1-77 (80)
10 2l5t_A Lipoamide acyltransfera 99.7 7.5E-18 2.6E-22 117.4 8.2 75 44-119 2-76 (77)
11 1zy8_K Pyruvate dehydrogenase 99.7 5.9E-19 2E-23 147.5 0.0 81 42-122 2-82 (229)
12 1iyu_A E2P, dihydrolipoamide a 99.7 9.4E-17 3.2E-21 112.4 9.5 74 44-121 2-75 (79)
13 1gjx_A Pyruvate dehydrogenase; 99.7 3E-17 1E-21 115.5 4.1 76 43-120 2-77 (81)
14 2k7v_A Dihydrolipoyllysine-res 99.6 1.6E-16 5.3E-21 113.0 0.4 73 42-121 1-73 (85)
15 2jku_A Propionyl-COA carboxyla 99.5 5.8E-15 2E-19 106.9 2.7 84 34-118 6-93 (94)
16 1z6h_A Biotin/lipoyl attachmen 99.5 1E-13 3.5E-18 94.8 8.1 64 56-120 6-69 (72)
17 2kcc_A Acetyl-COA carboxylase 99.5 6.2E-14 2.1E-18 99.3 5.3 65 56-122 12-76 (84)
18 2dnc_A Pyruvate dehydrogenase 99.4 2.3E-13 7.9E-18 99.2 7.9 59 161-219 7-65 (98)
19 3crk_C Dihydrolipoyllysine-res 99.4 2.6E-13 9E-18 96.6 7.6 59 161-219 5-63 (87)
20 2dn8_A Acetyl-COA carboxylase 99.4 4.3E-13 1.5E-17 98.0 8.2 64 56-121 24-87 (100)
21 2dne_A Dihydrolipoyllysine-res 99.4 4E-13 1.4E-17 99.7 7.7 59 161-219 7-65 (108)
22 1y8o_B Dihydrolipoyllysine-res 99.4 4.4E-13 1.5E-17 102.2 7.9 59 161-219 27-85 (128)
23 2d5d_A Methylmalonyl-COA decar 99.4 1.2E-12 4.3E-17 89.6 8.6 62 56-118 12-73 (74)
24 1k8m_A E2 component of branche 99.4 5.2E-13 1.8E-17 96.4 6.5 58 162-219 5-62 (93)
25 1dcz_A Transcarboxylase 1.3S s 99.4 1.6E-12 5.4E-17 90.0 7.8 62 56-118 15-76 (77)
26 1bdo_A Acetyl-COA carboxylase; 99.4 1.3E-12 4.5E-17 91.2 6.6 60 58-118 13-79 (80)
27 2ejm_A Methylcrotonoyl-COA car 99.4 2E-12 6.9E-17 94.2 7.8 66 56-122 21-86 (99)
28 1ghj_A E2, E2, the dihydrolipo 99.3 2E-12 6.9E-17 90.1 6.6 58 162-219 2-59 (79)
29 1pmr_A Dihydrolipoyl succinylt 99.3 6.4E-13 2.2E-17 93.0 0.7 57 163-219 4-60 (80)
30 1zy8_K Pyruvate dehydrogenase 99.3 5.5E-13 1.9E-17 111.3 0.0 58 162-219 4-61 (229)
31 3n6r_A Propionyl-COA carboxyla 99.2 1.1E-11 3.8E-16 118.0 8.7 63 56-119 619-681 (681)
32 2l5t_A Lipoamide acyltransfera 99.2 1.1E-11 3.8E-16 85.9 5.7 57 163-219 3-59 (77)
33 3dva_I Dihydrolipoyllysine-res 99.2 1.2E-12 4.3E-17 118.3 0.0 58 162-219 3-60 (428)
34 1qjo_A Dihydrolipoamide acetyl 99.2 3.3E-11 1.1E-15 84.0 6.8 56 162-219 3-58 (80)
35 3hbl_A Pyruvate carboxylase; T 99.2 3.6E-11 1.2E-15 120.1 8.7 64 56-120 1084-1147(1150)
36 3va7_A KLLA0E08119P; carboxyla 99.2 3.5E-11 1.2E-15 120.8 8.3 61 57-118 1175-1235(1236)
37 1gjx_A Pyruvate dehydrogenase; 99.2 2.4E-11 8.2E-16 84.9 4.4 56 162-218 3-58 (81)
38 1iyu_A E2P, dihydrolipoamide a 99.1 7.5E-11 2.5E-15 82.1 6.6 54 163-219 3-56 (79)
39 3u9t_A MCC alpha, methylcroton 99.1 4.1E-12 1.4E-16 120.9 0.0 64 56-120 609-672 (675)
40 2k32_A A; NMR {Campylobacter j 99.0 3.3E-10 1.1E-14 84.3 5.9 69 56-125 8-106 (116)
41 2kcc_A Acetyl-COA carboxylase 98.9 1.1E-09 3.8E-14 77.2 5.7 46 174-219 12-57 (84)
42 3bg3_A Pyruvate carboxylase, m 98.9 2.5E-10 8.5E-15 109.0 2.7 62 56-118 656-717 (718)
43 1zko_A Glycine cleavage system 98.9 1.9E-09 6.4E-14 82.9 6.2 71 45-122 38-116 (136)
44 2qf7_A Pyruvate carboxylase pr 98.9 8.3E-10 2.8E-14 110.6 5.3 63 56-119 1102-1164(1165)
45 3va7_A KLLA0E08119P; carboxyla 98.9 1E-10 3.4E-15 117.6 -2.0 54 160-219 1166-1219(1236)
46 2k7v_A Dihydrolipoyllysine-res 98.8 4.1E-10 1.4E-14 79.5 0.5 51 163-219 4-54 (85)
47 1z6h_A Biotin/lipoyl attachmen 98.8 1E-08 3.5E-13 69.5 6.4 44 175-218 7-50 (72)
48 1bdo_A Acetyl-COA carboxylase; 98.8 7.8E-09 2.7E-13 71.8 5.0 43 177-219 21-63 (80)
49 2dn8_A Acetyl-COA carboxylase 98.7 1.2E-08 4E-13 74.2 5.7 43 174-216 24-66 (100)
50 1dcz_A Transcarboxylase 1.3S s 98.7 5.5E-08 1.9E-12 66.7 7.9 45 174-218 15-59 (77)
51 2jku_A Propionyl-COA carboxyla 98.7 6.3E-09 2.1E-13 74.9 3.1 45 174-218 32-76 (94)
52 2d5d_A Methylmalonyl-COA decar 98.7 4.4E-08 1.5E-12 66.5 6.4 45 174-218 12-56 (74)
53 3n6r_A Propionyl-COA carboxyla 98.7 3.9E-08 1.3E-12 93.7 8.1 44 176-219 621-664 (681)
54 1zko_A Glycine cleavage system 98.6 4.2E-08 1.4E-12 75.3 6.3 43 176-218 45-88 (136)
55 1hpc_A H protein of the glycin 98.6 6.3E-08 2.2E-12 73.8 6.3 44 176-219 36-80 (131)
56 2ejm_A Methylcrotonoyl-COA car 98.6 7E-08 2.4E-12 69.9 5.7 45 174-218 21-65 (99)
57 1onl_A Glycine cleavage system 98.6 9.3E-08 3.2E-12 72.6 6.6 44 176-219 36-80 (128)
58 1hpc_A H protein of the glycin 98.6 3E-08 1E-12 75.7 3.7 71 44-121 28-106 (131)
59 3a7l_A H-protein, glycine clea 98.6 7.5E-08 2.5E-12 73.2 5.5 71 44-121 29-107 (128)
60 3a7l_A H-protein, glycine clea 98.6 1.2E-07 4E-12 72.1 6.5 44 176-219 37-81 (128)
61 3hbl_A Pyruvate carboxylase; T 98.6 1.4E-07 4.9E-12 94.4 9.0 44 176-219 1086-1129(1150)
62 1onl_A Glycine cleavage system 98.5 1.4E-07 4.9E-12 71.6 5.6 71 44-121 28-106 (128)
63 3u9t_A MCC alpha, methylcroton 98.4 2.8E-08 9.6E-13 94.5 0.0 44 176-219 611-654 (675)
64 3ne5_B Cation efflux system pr 98.2 1.9E-06 6.4E-11 77.3 7.4 67 56-123 128-243 (413)
65 3bg3_A Pyruvate carboxylase, m 98.2 8.1E-07 2.8E-11 84.9 4.7 45 175-219 657-701 (718)
66 3lnn_A Membrane fusion protein 98.2 1.7E-06 5.8E-11 75.5 6.4 66 57-123 65-207 (359)
67 2f1m_A Acriflavine resistance 98.2 5.4E-07 1.8E-11 76.0 3.0 66 57-123 30-168 (277)
68 3fpp_A Macrolide-specific effl 98.2 1.8E-06 6E-11 74.9 6.0 65 57-122 39-191 (341)
69 3klr_A Glycine cleavage system 98.2 4E-06 1.4E-10 63.2 6.5 43 176-218 32-75 (125)
70 2qf7_A Pyruvate carboxylase pr 98.1 1.4E-06 4.8E-11 87.4 4.9 45 175-219 1103-1147(1165)
71 3klr_A Glycine cleavage system 98.1 4.8E-06 1.6E-10 62.8 5.9 49 58-106 32-81 (125)
72 3mxu_A Glycine cleavage system 98.0 8.9E-06 3.1E-10 62.6 6.5 43 176-218 54-97 (143)
73 3tzu_A GCVH, glycine cleavage 98.0 8.8E-06 3E-10 62.2 5.7 43 176-218 49-92 (137)
74 3mxu_A Glycine cleavage system 98.0 1.1E-05 3.8E-10 62.1 5.9 49 58-106 54-103 (143)
75 1vf7_A Multidrug resistance pr 97.9 3.3E-06 1.1E-10 74.4 2.9 65 57-122 51-174 (369)
76 2k32_A A; NMR {Campylobacter j 97.9 8.4E-06 2.9E-10 60.1 4.5 45 174-218 8-81 (116)
77 3tzu_A GCVH, glycine cleavage 97.9 1.1E-05 3.7E-10 61.7 5.1 46 58-103 49-95 (137)
78 3hgb_A Glycine cleavage system 97.7 6E-05 2E-09 58.7 6.5 43 176-218 59-102 (155)
79 3hgb_A Glycine cleavage system 97.7 5.3E-05 1.8E-09 59.0 5.9 45 58-102 59-104 (155)
80 4dk0_A Putative MACA; alpha-ha 97.6 2.8E-06 9.7E-11 74.3 -3.2 64 56-120 39-190 (369)
81 2xha_A NUSG, transcription ant 97.1 0.0024 8.3E-08 51.3 8.7 32 62-99 22-53 (193)
82 3cdx_A Succinylglutamatedesucc 97.0 0.0026 8.8E-08 55.7 9.1 61 59-122 276-340 (354)
83 3na6_A Succinylglutamate desuc 97.0 0.0026 8.8E-08 55.3 8.8 61 58-121 265-329 (331)
84 2xhc_A Transcription antitermi 96.8 0.0055 1.9E-07 53.8 9.5 31 62-98 62-92 (352)
85 3fmc_A Putative succinylglutam 96.7 0.004 1.4E-07 54.9 8.0 61 57-120 297-363 (368)
86 2auk_A DNA-directed RNA polyme 96.3 0.038 1.3E-06 44.2 10.5 44 62-107 63-106 (190)
87 3fpp_A Macrolide-specific effl 96.2 0.016 5.4E-07 49.7 8.4 55 65-121 11-65 (341)
88 3ne5_B Cation efflux system pr 96.0 0.0022 7.5E-08 57.2 2.2 118 76-200 110-240 (413)
89 1f3z_A EIIA-GLC, glucose-speci 95.8 0.0076 2.6E-07 47.1 3.9 59 56-119 19-116 (161)
90 2qj8_A MLR6093 protein; struct 95.6 0.048 1.6E-06 47.1 8.9 60 58-120 265-328 (332)
91 2gpr_A Glucose-permease IIA co 95.3 0.011 3.8E-07 45.9 3.4 58 57-119 15-111 (154)
92 1ax3_A Iiaglc, glucose permeas 95.1 0.012 4E-07 46.1 2.9 59 56-119 19-116 (162)
93 2f1m_A Acriflavine resistance 95.0 0.023 7.7E-07 47.3 4.5 45 75-121 12-56 (277)
94 3na6_A Succinylglutamate desuc 94.8 0.038 1.3E-06 47.9 5.5 41 177-217 266-310 (331)
95 3d4r_A Domain of unknown funct 94.7 0.042 1.4E-06 42.8 5.1 49 56-104 107-156 (169)
96 3lnn_A Membrane fusion protein 94.2 0.057 1.9E-06 46.5 5.4 48 74-122 44-92 (359)
97 3fmc_A Putative succinylglutam 94.2 0.057 1.9E-06 47.5 5.3 43 176-218 298-346 (368)
98 3cdx_A Succinylglutamatedesucc 94.0 0.083 2.8E-06 46.0 6.0 42 177-218 276-321 (354)
99 2auk_A DNA-directed RNA polyme 91.9 0.15 5.2E-06 40.7 4.2 36 179-216 62-97 (190)
100 3d4r_A Domain of unknown funct 91.6 0.32 1.1E-05 37.9 5.5 44 175-218 108-152 (169)
101 2xha_A NUSG, transcription ant 91.6 0.064 2.2E-06 43.0 1.6 45 65-116 85-157 (193)
102 1vf7_A Multidrug resistance pr 91.5 0.11 3.6E-06 45.3 3.1 44 76-121 34-77 (369)
103 3our_B EIIA, phosphotransferas 90.9 1.1 3.7E-05 35.5 8.1 27 176-202 115-141 (183)
104 4dk0_A Putative MACA; alpha-ha 89.9 0.085 2.9E-06 45.5 1.0 52 68-121 15-66 (369)
105 2qj8_A MLR6093 protein; struct 89.4 0.51 1.7E-05 40.5 5.6 42 176-217 265-310 (332)
106 3lu0_D DNA-directed RNA polyme 85.1 3.4 0.00012 41.9 9.1 44 62-107 1002-1045(1407)
107 2gpr_A Glucose-permease IIA co 83.6 0.72 2.5E-05 35.5 3.0 28 57-84 87-114 (154)
108 3our_B EIIA, phosphotransferas 81.0 0.87 3E-05 36.0 2.6 28 57-84 114-141 (183)
109 2xhc_A Transcription antitermi 79.0 1.6 5.4E-05 38.1 3.8 32 179-216 61-92 (352)
110 1f3z_A EIIA-GLC, glucose-speci 75.6 1.6 5.4E-05 33.8 2.6 27 58-84 93-119 (161)
111 2bco_A Succinylglutamate desuc 75.2 2.4 8.3E-05 36.6 4.0 51 64-122 280-330 (350)
112 1ax3_A Iiaglc, glucose permeas 68.8 2.9 9.7E-05 32.4 2.6 29 56-84 91-119 (162)
113 1qpo_A Quinolinate acid phosph 67.2 4.5 0.00015 34.1 3.7 23 60-82 72-94 (284)
114 1brw_A PYNP, protein (pyrimidi 65.6 3.9 0.00013 36.6 3.1 30 55-84 372-401 (433)
115 2dsj_A Pyrimidine-nucleoside ( 65.6 3.8 0.00013 36.5 3.1 30 55-84 364-393 (423)
116 1uou_A Thymidine phosphorylase 63.3 4.8 0.00016 36.4 3.3 27 58-84 410-436 (474)
117 2b7n_A Probable nicotinate-nuc 63.3 6 0.0002 33.0 3.7 22 61-82 60-81 (273)
118 1x1o_A Nicotinate-nucleotide p 63.2 4.3 0.00015 34.2 2.9 22 61-82 74-95 (286)
119 3tqv_A Nicotinate-nucleotide p 63.2 4.4 0.00015 34.3 2.9 22 61-82 77-98 (287)
120 1brw_A PYNP, protein (pyrimidi 63.0 6.6 0.00022 35.1 4.1 30 173-202 372-401 (433)
121 2dsj_A Pyrimidine-nucleoside ( 62.8 6.6 0.00022 35.0 4.1 29 174-202 365-393 (423)
122 3l0g_A Nicotinate-nucleotide p 62.7 4.9 0.00017 34.2 3.1 22 61-82 86-107 (300)
123 3h5q_A PYNP, pyrimidine-nucleo 62.4 4.1 0.00014 36.5 2.7 28 55-82 375-402 (436)
124 3it5_A Protease LASA; metallop 60.9 3.5 0.00012 32.3 1.8 19 63-81 85-103 (182)
125 1o4u_A Type II quinolic acid p 60.5 4.2 0.00014 34.3 2.3 22 61-82 73-94 (285)
126 3gnn_A Nicotinate-nucleotide p 60.3 5.3 0.00018 33.9 2.9 22 61-82 88-109 (298)
127 1uou_A Thymidine phosphorylase 59.9 7.3 0.00025 35.3 3.9 30 174-203 408-437 (474)
128 3paj_A Nicotinate-nucleotide p 58.6 5.8 0.0002 34.0 2.9 23 60-82 109-131 (320)
129 1qap_A Quinolinic acid phospho 58.1 6.1 0.00021 33.4 2.9 22 61-82 87-108 (296)
130 2tpt_A Thymidine phosphorylase 55.8 6.7 0.00023 35.1 2.9 31 173-203 377-407 (440)
131 2tpt_A Thymidine phosphorylase 55.6 4 0.00014 36.6 1.4 30 55-84 377-406 (440)
132 3h5q_A PYNP, pyrimidine-nucleo 54.7 9.6 0.00033 34.1 3.7 30 173-202 375-404 (436)
133 3tuf_B Stage II sporulation pr 54.5 5.6 0.00019 32.8 2.0 26 58-83 130-155 (245)
134 1qpo_A Quinolinate acid phosph 54.4 9.6 0.00033 32.0 3.5 24 178-201 72-95 (284)
135 2hsi_A Putative peptidase M23; 53.4 6.3 0.00022 33.1 2.2 17 64-80 233-249 (282)
136 3it5_A Protease LASA; metallop 52.8 7.2 0.00025 30.5 2.3 22 179-200 83-104 (182)
137 1qwy_A Peptidoglycan hydrolase 52.6 6.8 0.00023 33.2 2.3 21 100-121 239-259 (291)
138 1x1o_A Nicotinate-nucleotide p 52.1 9.3 0.00032 32.1 3.0 23 179-201 74-96 (286)
139 2jbm_A Nicotinate-nucleotide p 51.9 7.1 0.00024 33.0 2.3 22 61-82 73-94 (299)
140 3l0g_A Nicotinate-nucleotide p 51.9 10 0.00034 32.2 3.2 24 178-201 85-108 (300)
141 3tqv_A Nicotinate-nucleotide p 51.8 9.5 0.00032 32.2 3.0 23 179-201 77-99 (287)
142 1o4u_A Type II quinolic acid p 50.3 8.8 0.0003 32.3 2.6 23 179-201 73-95 (285)
143 2b7n_A Probable nicotinate-nuc 49.6 13 0.00043 30.9 3.5 23 179-201 60-82 (273)
144 3gnn_A Nicotinate-nucleotide p 49.1 11 0.00038 31.9 3.0 23 179-201 88-110 (298)
145 3paj_A Nicotinate-nucleotide p 47.5 12 0.00041 32.1 3.0 24 178-201 109-132 (320)
146 1qap_A Quinolinic acid phospho 46.7 13 0.00044 31.4 3.1 24 178-201 86-109 (296)
147 3nyy_A Putative glycyl-glycine 46.6 8.8 0.0003 31.6 2.0 18 64-81 183-200 (252)
148 2bco_A Succinylglutamate desuc 43.6 11 0.00036 32.5 2.1 32 181-216 279-310 (350)
149 3lu0_D DNA-directed RNA polyme 43.4 16 0.00055 37.2 3.6 36 179-216 1001-1036(1407)
150 2gu1_A Zinc peptidase; alpha/b 43.1 11 0.00039 32.5 2.3 19 63-81 284-302 (361)
151 2jbm_A Nicotinate-nucleotide p 40.6 15 0.0005 31.0 2.5 23 179-201 73-95 (299)
152 3vr4_A V-type sodium ATPase ca 39.8 51 0.0017 30.6 6.2 53 65-121 131-186 (600)
153 3tuf_B Stage II sporulation pr 39.0 15 0.0005 30.2 2.2 23 178-200 132-154 (245)
154 3csq_A Morphogenesis protein 1 38.5 8.4 0.00029 33.0 0.7 21 62-82 250-270 (334)
155 1qwy_A Peptidoglycan hydrolase 38.5 15 0.00051 31.0 2.2 21 179-199 237-257 (291)
156 2hsi_A Putative peptidase M23; 37.7 15 0.00052 30.7 2.1 20 180-199 231-250 (282)
157 3c2e_A Nicotinate-nucleotide p 37.0 14 0.00046 31.2 1.7 22 61-82 69-96 (294)
158 1yw4_A Succinylglutamate desuc 35.0 8.1 0.00028 33.1 -0.0 34 64-97 278-316 (341)
159 3csq_A Morphogenesis protein 1 34.2 14 0.00047 31.6 1.3 19 180-198 250-268 (334)
160 2lmc_B DNA-directed RNA polyme 33.7 3.8 0.00013 28.2 -1.9 17 62-78 66-82 (84)
161 3nyy_A Putative glycyl-glycine 32.0 21 0.00072 29.3 2.1 22 179-200 179-201 (252)
162 1yw4_A Succinylglutamate desuc 30.7 11 0.00038 32.3 0.1 35 182-216 278-317 (341)
163 2gu1_A Zinc peptidase; alpha/b 29.7 25 0.00084 30.3 2.2 21 179-199 282-302 (361)
164 1e2w_A Cytochrome F; electron 29.3 1.1E+02 0.0038 24.9 5.8 19 84-102 165-184 (251)
165 1q90_A Apocytochrome F; membra 26.9 1.2E+02 0.004 25.2 5.6 19 84-102 165-184 (292)
166 3c2e_A Nicotinate-nucleotide p 26.4 29 0.00099 29.1 2.0 23 179-201 69-97 (294)
No 1
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.86 E-value=2.2e-21 Score=148.44 Aligned_cols=96 Identities=44% Similarity=0.689 Sum_probs=82.2
Q ss_pred ceeeeeeccCCcceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC-ee
Q psy10439 30 KIICLHTTNILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT-TD 108 (219)
Q Consensus 30 ~~~~~~~~~~~~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd-~~ 108 (219)
..|.|......+|.++|+||++|+++.+|+|.+|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+ .
T Consensus 14 ~~~~~~~~~~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~- 92 (128)
T 1y8o_B 14 LENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRD- 92 (128)
T ss_dssp ---------CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCS-
T ss_pred hccccCccccCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCee-
Confidence 34666777778999999999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred eecCcEEEEEeecCcccc
Q psy10439 109 VKVGTLIAVMVEEGEDWQ 126 (219)
Q Consensus 109 V~~G~~l~~i~~~~~~~~ 126 (219)
|..|++|+.|.+.+++..
T Consensus 93 V~~G~~L~~i~~~~~~~~ 110 (128)
T 1y8o_B 93 VPLGTPLCIIVEKEADIS 110 (128)
T ss_dssp EETTCEEEEEESSGGGGG
T ss_pred ecCCCEEEEEecCccchh
Confidence 999999999987654433
No 2
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.85 E-value=1.8e-21 Score=144.91 Aligned_cols=88 Identities=47% Similarity=0.748 Sum_probs=81.9
Q ss_pred CCcceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC-eeeecCcEEEE
Q psy10439 39 ILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT-TDVKVGTLIAV 117 (219)
Q Consensus 39 ~~~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd-~~V~~G~~l~~ 117 (219)
..+|.++|+||++|+++.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.+++++.|+ . |..|++|+.
T Consensus 3 ~~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~-V~~G~~l~~ 81 (108)
T 2dne_A 3 SGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRD-VPIGAIICI 81 (108)
T ss_dssp CCCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCS-EETTCEEEE
T ss_pred CCccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCee-ecCCCEEEE
Confidence 47788999999999999999999999999999999999999999999999999999999999999998 8 999999999
Q ss_pred EeecCccccc
Q psy10439 118 MVEEGEDWQN 127 (219)
Q Consensus 118 i~~~~~~~~~ 127 (219)
|...+++...
T Consensus 82 i~~~~~~~~~ 91 (108)
T 2dne_A 82 TVGKPEDIEA 91 (108)
T ss_dssp EESCHHHHHH
T ss_pred EecCccchhh
Confidence 9876554433
No 3
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=136.24 Aligned_cols=84 Identities=58% Similarity=0.956 Sum_probs=79.0
Q ss_pred CCcceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeee-ecCcEEEE
Q psy10439 39 ILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDV-KVGTLIAV 117 (219)
Q Consensus 39 ~~~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V-~~G~~l~~ 117 (219)
+..|.++|+||++|+++.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.+++++.|+. | ..|++|+.
T Consensus 3 ~~~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~-Vv~~G~~l~~ 81 (98)
T 2dnc_A 3 SGSSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK-NIRLGSLIGL 81 (98)
T ss_dssp CCCCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCC-CEESSCEEEE
T ss_pred CCcccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCE-EcCCCCEEEE
Confidence 445788999999999999999999999999999999999999999999999999999999999999999 9 99999999
Q ss_pred EeecCc
Q psy10439 118 MVEEGE 123 (219)
Q Consensus 118 i~~~~~ 123 (219)
|...++
T Consensus 82 i~~~~~ 87 (98)
T 2dnc_A 82 IVEEGE 87 (98)
T ss_dssp EECTTS
T ss_pred EecCCC
Confidence 976543
No 4
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.83 E-value=5e-20 Score=131.78 Aligned_cols=82 Identities=49% Similarity=0.823 Sum_probs=77.6
Q ss_pred CcceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC-eeeecCcEEEEE
Q psy10439 40 LDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT-TDVKVGTLIAVM 118 (219)
Q Consensus 40 ~~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd-~~V~~G~~l~~i 118 (219)
.++.++|+||++|+++.+|+|.+|+|++||.|++||.|++||+||+.++|+||.+|+|.+++++.|+ . |..|++|+.+
T Consensus 2 ~~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~-V~~G~~l~~i 80 (87)
T 3crk_C 2 YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRD-VPLGTPLCII 80 (87)
T ss_dssp CCCEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCC-EETTCEEEEE
T ss_pred CCcceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeE-ECCCCEEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999999999 8 9999999999
Q ss_pred eecC
Q psy10439 119 VEEG 122 (219)
Q Consensus 119 ~~~~ 122 (219)
.+.+
T Consensus 81 ~~~~ 84 (87)
T 3crk_C 81 VEKE 84 (87)
T ss_dssp ESSS
T ss_pred Eccc
Confidence 7543
No 5
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.80 E-value=2.7e-19 Score=129.63 Aligned_cols=79 Identities=27% Similarity=0.486 Sum_probs=75.5
Q ss_pred ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
+.+.|+||++|.++.+|+|.+|+|++||.|++||+|++||++|+..+|+||.+|+|.+++++.|+. |..|++|+.+...
T Consensus 3 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~~ 81 (93)
T 1k8m_A 3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AYVGKPLVDIETE 81 (93)
T ss_dssp CCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCE-ECTTSEEEEEECS
T ss_pred cceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCE-eCCCCEEEEEecC
Confidence 357899999999999999999999999999999999999999999999999999999999999999 9999999999643
No 6
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.77 E-value=1.2e-18 Score=122.19 Aligned_cols=76 Identities=36% Similarity=0.671 Sum_probs=73.4
Q ss_pred eEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439 44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE 120 (219)
Q Consensus 44 ~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~ 120 (219)
++++||++|.++.+|+|.+|+|++||.|++||+|+++|++|+..+|+||++|+|.+++++.|+. |..|++|+.+..
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~ 77 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT-VLSGELLGKLTE 77 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEECC
T ss_pred cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCE-ECCCCEEEEEec
Confidence 5799999999999999999999999999999999999999999999999999999999999999 999999999853
No 7
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=99.75 E-value=7e-20 Score=165.87 Aligned_cols=82 Identities=40% Similarity=0.689 Sum_probs=0.0
Q ss_pred ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
|.++|+||+||++|++|+|++|+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+. |.+|++|+.|+..
T Consensus 1 M~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~-V~~G~~l~~i~~~ 79 (428)
T 3dva_I 1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV-ATVGQTLITLDAP 79 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEecC
Confidence 567899999999999999999999999999999999999999999999999999999999999999 9999999999865
Q ss_pred Ccc
Q psy10439 122 GED 124 (219)
Q Consensus 122 ~~~ 124 (219)
+++
T Consensus 80 ~~~ 82 (428)
T 3dva_I 80 GYE 82 (428)
T ss_dssp ---
T ss_pred Ccc
Confidence 544
No 8
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.74 E-value=4.8e-18 Score=119.21 Aligned_cols=77 Identities=27% Similarity=0.413 Sum_probs=73.2
Q ss_pred ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
|.+.|+||++|.+ +|+|.+|++++||.|++||+|+.||++|+..+|+||.+|+|.+++++.|+. |..|++|+.|...
T Consensus 1 m~~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 1 MVKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVE 77 (80)
T ss_dssp CEEEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCE-ECTTCCCEEEESC
T ss_pred CCeEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCE-ECCCCEEEEEEcc
Confidence 4578999999997 899999999999999999999999999999999999999999999999999 9999999999753
No 9
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.73 E-value=1.3e-19 Score=127.50 Aligned_cols=77 Identities=35% Similarity=0.600 Sum_probs=73.7
Q ss_pred ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439 42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
|.++++||++|+++.+|+|.+|+|++||.|++||.|++||++|+..+|+||++|+|.++++++|+. |..|++|+.+.
T Consensus 1 m~~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~G~~l~~i~ 77 (80)
T 1pmr_A 1 SSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT-VTSRQILGRLR 77 (80)
T ss_dssp CCCCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCE-ECSSSEEEBCC
T ss_pred CCcEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCE-ECCCCEEEEEe
Confidence 346799999999999999999999999999999999999999999999999999999999999999 99999999875
No 10
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.73 E-value=7.5e-18 Score=117.42 Aligned_cols=75 Identities=36% Similarity=0.556 Sum_probs=72.7
Q ss_pred eEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439 44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 44 ~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
++++||++|++...|+|.+|++++||.|++||.|+.+|++|+...|+||.+|+|.+++++.|+. |..|++|+.+.
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~ 76 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV-VPVGSTLLQID 76 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCE-ECSCSEEEEEE
T ss_pred eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCE-ECCCCEEEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999999 99999999875
No 11
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.71 E-value=5.9e-19 Score=147.45 Aligned_cols=81 Identities=59% Similarity=1.028 Sum_probs=0.0
Q ss_pred ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
|.++|+||+||++|++|+|++|+|++||.|++||.||+||+||+.++|+||++|+|.++++++|+..|.+|++|+.|...
T Consensus 2 ~~~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~~ 81 (229)
T 1zy8_K 2 DPIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEE 81 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEecc
Confidence 67789999999999999999999999999999999999999999999999999999999999999339999999998754
Q ss_pred C
Q psy10439 122 G 122 (219)
Q Consensus 122 ~ 122 (219)
+
T Consensus 82 ~ 82 (229)
T 1zy8_K 82 G 82 (229)
T ss_dssp -
T ss_pred C
Confidence 3
No 12
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.69 E-value=9.4e-17 Score=112.42 Aligned_cols=74 Identities=20% Similarity=0.353 Sum_probs=70.3
Q ss_pred eEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 44 ~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
++++||++|.+ + +|.+|+|++||.|++||+|+.||++|+..+|+||.+|+|.+++++.|+. |..|++|+.+...
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAIIELEPA 75 (79)
T ss_dssp EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCE-EETTSEEEEEECC
T ss_pred cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEecC
Confidence 57899999996 7 9999999999999999999999999999999999999999999999999 9999999998653
No 13
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.67 E-value=3e-17 Score=115.46 Aligned_cols=76 Identities=28% Similarity=0.409 Sum_probs=72.1
Q ss_pred eeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439 43 QQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE 120 (219)
Q Consensus 43 ~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~ 120 (219)
.++++||++| +...|+|.+|++++||.|++||.|+.+|++|+..+|+||.+|+|.+++++.|+. +..|++|+.+..
T Consensus 2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~ 77 (81)
T 1gjx_A 2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK-ISEGGLIVVVEA 77 (81)
T ss_dssp CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE-ECSSSCCCEECC
T ss_pred cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCE-eCCCCEEEEEEe
Confidence 4578999999 678999999999999999999999999999999999999999999999999999 999999999854
No 14
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.58 E-value=1.6e-16 Score=112.96 Aligned_cols=73 Identities=27% Similarity=0.425 Sum_probs=68.3
Q ss_pred ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
|.++|++|++ |+|.+|++++||.|++||+|+.||++|+...|+||.+|+|.+++++.|+. |..|++|+.|...
T Consensus 1 m~~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~-V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 1 MVKEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVE 73 (85)
T ss_dssp CCSCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCC-BCTTSEEEEEECC
T ss_pred CCcEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEEcC
Confidence 3457889988 89999999999999999999999999999999999999999999999999 9999999999754
No 15
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.50 E-value=5.8e-15 Score=106.85 Aligned_cols=84 Identities=24% Similarity=0.381 Sum_probs=28.9
Q ss_pred eeeccCCcceeEEecCCCCCCC----ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeee
Q psy10439 34 LHTTNILDAQQEIKMPSLSPTM----TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDV 109 (219)
Q Consensus 34 ~~~~~~~~~~~~i~~P~~~~~~----~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V 109 (219)
-|++....+...|.+|+..... ..|+|.+|++++||.|++||+|++||++|+..+|+||.+|+|.+++++.|+. |
T Consensus 6 ~~~~~~~~~~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~-V 84 (94)
T 2jku_A 6 HHSSGVDLGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDT-V 84 (94)
T ss_dssp ------------------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC---------------------------
T ss_pred cccccccccCEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCE-E
Confidence 4566677788899999998763 5899999999999999999999999999999999999999999999999999 9
Q ss_pred ecCcEEEEE
Q psy10439 110 KVGTLIAVM 118 (219)
Q Consensus 110 ~~G~~l~~i 118 (219)
..|++|+.|
T Consensus 85 ~~G~~L~~i 93 (94)
T 2jku_A 85 GEGDLLVEL 93 (94)
T ss_dssp ---------
T ss_pred CCCCEEEEE
Confidence 999999876
No 16
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.48 E-value=1e-13 Score=94.75 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=61.2
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE 120 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~ 120 (219)
..|+|.+|++++||.|++||+|+.|+++|+...|+||.+|+|.+++++.|+. |..|++|+.+.+
T Consensus 6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~ 69 (72)
T 1z6h_A 6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDF-VNEGDVLLELSN 69 (72)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEEGG
T ss_pred ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCE-ECCCCEEEEEeC
Confidence 3599999999999999999999999999999999999999999999999999 999999999854
No 17
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.45 E-value=6.2e-14 Score=99.31 Aligned_cols=65 Identities=18% Similarity=0.406 Sum_probs=61.4
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
..|+|.+|++++||.|++||.|+.||++|+..+|+||.+|+|.+++ +.|+. |..|++|+.|.+..
T Consensus 12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~-V~~G~~l~~i~~~~ 76 (84)
T 2kcc_A 12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAV-LEAGCVVARLELDD 76 (84)
T ss_dssp SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCC-CCTTCCCEEEECSC
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCE-ECCCCEEEEEeCCC
Confidence 4599999999999999999999999999999999999999999999 99999 99999999997544
No 18
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.3e-13 Score=99.22 Aligned_cols=59 Identities=68% Similarity=1.098 Sum_probs=56.3
Q ss_pred ceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 161 GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 161 ~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
...+.+|.++.++.+|+|.+|++++||.|++||+||++|+||+.++|.||++|+|.+++
T Consensus 7 ~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~ 65 (98)
T 2dnc_A 7 GIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIV 65 (98)
T ss_dssp CEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECS
T ss_pred cEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEE
Confidence 46799999999999999999999999999999999999999999999999999999874
No 19
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.44 E-value=2.6e-13 Score=96.59 Aligned_cols=59 Identities=53% Similarity=0.839 Sum_probs=56.1
Q ss_pred ceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 161 GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 161 ~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
...+.+|.++.++.+|.|.+|++++||.|++||+|+++|+||+.++|.||++|+|.+++
T Consensus 5 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~ 63 (87)
T 3crk_C 5 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKIL 63 (87)
T ss_dssp EEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEES
T ss_pred ceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999864
No 20
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.3e-13 Score=97.96 Aligned_cols=64 Identities=17% Similarity=0.415 Sum_probs=60.7
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
..|+|.+|++++||.|++||+|+++|++|+..+|+||.+|+|. ++++.|+. |..|++|+.+...
T Consensus 24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~-V~~G~~l~~i~~~ 87 (100)
T 2dn8_A 24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAV-LEAGCVVARLELD 87 (100)
T ss_dssp SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCE-ECSSCEEEEECCS
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCE-ECCCCEEEEEEcC
Confidence 4599999999999999999999999999999999999999999 99999999 9999999998643
No 21
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.42 E-value=4e-13 Score=99.66 Aligned_cols=59 Identities=56% Similarity=0.909 Sum_probs=56.4
Q ss_pred ceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 161 GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 161 ~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
...+.+|.++.++.+|+|.+|++++||.|++||+||++|+||+.++|.||++|+|.+++
T Consensus 7 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~ 65 (108)
T 2dne_A 7 GQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKIL 65 (108)
T ss_dssp CEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECS
T ss_pred ceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEE
Confidence 46799999999999999999999999999999999999999999999999999999874
No 22
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.41 E-value=4.4e-13 Score=102.25 Aligned_cols=59 Identities=54% Similarity=0.861 Sum_probs=56.5
Q ss_pred ceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 161 GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 161 ~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
...+.+|.++.++.+|+|.+|++++||.|++||+||+||+||+.++|.||++|+|.+|+
T Consensus 27 ~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~ 85 (128)
T 1y8o_B 27 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKIL 85 (128)
T ss_dssp EEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEES
T ss_pred ceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEE
Confidence 46799999999999999999999999999999999999999999999999999999874
No 23
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.40 E-value=1.2e-12 Score=89.59 Aligned_cols=62 Identities=24% Similarity=0.408 Sum_probs=59.7
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
..|+|.+|++++||.|++||+|+.++++|....++||.+|+|.+++++.|+. |..|++|+.+
T Consensus 12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-v~~g~~l~~i 73 (74)
T 2d5d_A 12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEA-VDTGQPLIEL 73 (74)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEE
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCE-ECCCCEEEEE
Confidence 3599999999999999999999999999999999999999999999999999 9999999887
No 24
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.39 E-value=5.2e-13 Score=96.38 Aligned_cols=58 Identities=29% Similarity=0.586 Sum_probs=55.4
Q ss_pred eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
..+.+|.++.++.+|+|.+|++++||.|++||+|+.+|+||+.++|.||++|+|.+++
T Consensus 5 ~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~ 62 (93)
T 1k8m_A 5 VQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLY 62 (93)
T ss_dssp EEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEEC
T ss_pred eEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEE
Confidence 5688999999999999999999999999999999999999999999999999999864
No 25
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.37 E-value=1.6e-12 Score=89.98 Aligned_cols=62 Identities=29% Similarity=0.425 Sum_probs=59.7
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
..|+|.+|++++||.|++||+|+.|+++|+...|+||.+|+|.+++++.|+. |..|++|+.|
T Consensus 15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~-v~~G~~l~~i 76 (77)
T 1dcz_A 15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIKI 76 (77)
T ss_dssp SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCB-CCBTSEEEEE
T ss_pred CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCE-ECCCCEEEEE
Confidence 4599999999999999999999999999999999999999999999999999 9999999987
No 26
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.35 E-value=1.3e-12 Score=91.23 Aligned_cols=60 Identities=27% Similarity=0.464 Sum_probs=57.2
Q ss_pred EEEEE-------EEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 58 GTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 58 g~i~~-------w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
|+|.+ |++++||.|++||.|+.||++|+..+|+||.+|+|.++++++|+. |..|++|+.|
T Consensus 13 G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~L~~i 79 (80)
T 1bdo_A 13 GTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VEFDEPLVVI 79 (80)
T ss_dssp EEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCE-ECTTCEEEEE
T ss_pred eEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCE-ECCCCEEEEE
Confidence 77776 599999999999999999999999999999999999999999999 9999999987
No 27
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.35 E-value=2e-12 Score=94.23 Aligned_cols=66 Identities=27% Similarity=0.352 Sum_probs=62.4
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
..|+|.+|++++||.|++||+|+.|+++|+...|+||.+|+|.+++++.|+. |..|++|+.|.+..
T Consensus 21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~-V~~G~~L~~i~~~~ 86 (99)
T 2ejm_A 21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQ-ANRHTPLVEFEEEE 86 (99)
T ss_dssp SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEE-ECTTCBCEEECCCC
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCE-ECCCCEEEEEECCC
Confidence 4599999999999999999999999999999999999999999999999999 99999999996543
No 28
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.33 E-value=2e-12 Score=90.11 Aligned_cols=58 Identities=34% Similarity=0.691 Sum_probs=54.8
Q ss_pred eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
..+.+|.++.+..+|.|.+|++++||.|++||+|+.+|+||+..+|.||++|+|.+++
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~ 59 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIV 59 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEES
T ss_pred cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEE
Confidence 3578999999999999999999999999999999999999999999999999999863
No 29
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.26 E-value=6.4e-13 Score=93.02 Aligned_cols=57 Identities=42% Similarity=0.712 Sum_probs=54.1
Q ss_pred eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
.+.+|.++.++.+|.|.+|++++||.|++||+|+.+|+||+..+|.||++|+|.+++
T Consensus 4 ~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~ 60 (80)
T 1pmr_A 4 DILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVL 60 (80)
T ss_dssp CEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCT
T ss_pred EEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEE
Confidence 578999999999999999999999999999999999999999999999999998753
No 30
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.25 E-value=5.5e-13 Score=111.26 Aligned_cols=58 Identities=67% Similarity=1.079 Sum_probs=0.0
Q ss_pred eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
..|.||++|+++.+|+|.+|++++||.|++||+||+||+||+.++|+||++|+|.+|+
T Consensus 4 ~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~ 61 (229)
T 1zy8_K 4 IKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIV 61 (229)
T ss_dssp ----------------------------------------------------------
T ss_pred eeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEE
Confidence 4689999999999999999999999999999999999999999999999999999874
No 31
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.25 E-value=1.1e-11 Score=118.03 Aligned_cols=63 Identities=29% Similarity=0.407 Sum_probs=60.6
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
..|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+. |..|++|+.|+
T Consensus 619 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~-v~~g~~l~~i~ 681 (681)
T 3n6r_A 619 MPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNS-LAVDDVIMEFE 681 (681)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEEC
T ss_pred CcEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCE-eCCCCEEEEEC
Confidence 4599999999999999999999999999999999999999999999999999 99999999873
No 32
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.23 E-value=1.1e-11 Score=85.86 Aligned_cols=57 Identities=37% Similarity=0.593 Sum_probs=54.1
Q ss_pred eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
.+.+|.++.+...|.|.+|++++||.|++||+|+.+|++|+..+|.||++|+|.+++
T Consensus 3 ~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~ 59 (77)
T 2l5t_A 3 EFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKIL 59 (77)
T ss_dssp EEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEEC
T ss_pred EEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEE
Confidence 578999999999999999999999999999999999999999999999999998763
No 33
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=99.21 E-value=1.2e-12 Score=118.34 Aligned_cols=58 Identities=41% Similarity=0.720 Sum_probs=0.0
Q ss_pred eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
..+.||++|+++++|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.+|+
T Consensus 3 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~ 60 (428)
T 3dva_I 3 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 60 (428)
T ss_dssp ----------------------------------------------------------
T ss_pred eeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEE
Confidence 3689999999999999999999999999999999999999999999999999999874
No 34
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.20 E-value=3.3e-11 Score=83.98 Aligned_cols=56 Identities=23% Similarity=0.383 Sum_probs=52.4
Q ss_pred eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
..+.+|.++.+ +|.|.+|++++||.|++||+|+.+|++|+..+|.||++|+|.+++
T Consensus 3 ~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~ 58 (80)
T 1qjo_A 3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELK 58 (80)
T ss_dssp EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECC
T ss_pred eEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEe
Confidence 35789999987 899999999999999999999999999999999999999999863
No 35
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.18 E-value=3.6e-11 Score=120.14 Aligned_cols=64 Identities=16% Similarity=0.284 Sum_probs=61.2
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE 120 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~ 120 (219)
..|+|.+|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+. |..|++|+.|+.
T Consensus 1084 ~~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~-V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A 1084 MPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDT-IATGDLLIEIEK 1147 (1150)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCE-ECTTBEEEEEC-
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEec
Confidence 3599999999999999999999999999999999999999999999999999 999999999964
No 36
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.17 E-value=3.5e-11 Score=120.80 Aligned_cols=61 Identities=31% Similarity=0.395 Sum_probs=59.6
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
.|+|.+|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+. |..|++|+.|
T Consensus 1175 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~-V~~G~~l~~i 1235 (1236)
T 3va7_A 1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDM-VEAGDLVAVI 1235 (1236)
T ss_dssp CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCE-ECTTCEEEEE
T ss_pred cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCE-eCCCCEEEEe
Confidence 399999999999999999999999999999999999999999999999999 9999999987
No 37
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.15 E-value=2.4e-11 Score=84.95 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=52.2
Q ss_pred eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
..+.+|.++ ....|.|.+|++++||.|++||+|+.+|++|+..+|.||++|+|.++
T Consensus 3 ~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~ 58 (81)
T 1gjx_A 3 VELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEV 58 (81)
T ss_dssp EECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCC
T ss_pred EEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEE
Confidence 457899999 57899999999999999999999999999999999999999999875
No 38
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.14 E-value=7.5e-11 Score=82.06 Aligned_cols=54 Identities=22% Similarity=0.421 Sum_probs=50.3
Q ss_pred eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
.+.+|.++.. + .|.+|++++||.|++||+|+.+|++|+..+|.||++|+|.+++
T Consensus 3 ~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~ 56 (79)
T 1iyu_A 3 IIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVS 56 (79)
T ss_dssp EEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEES
T ss_pred EEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEE
Confidence 5789999985 6 9999999999999999999999999999999999999998763
No 39
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.14 E-value=4.1e-12 Score=120.92 Aligned_cols=64 Identities=25% Similarity=0.392 Sum_probs=0.0
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE 120 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~ 120 (219)
..|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+. |..|++|+.|++
T Consensus 609 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~-v~~g~~l~~i~~ 672 (675)
T 3u9t_A 609 MNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGEL-VEEGTPLVELDE 672 (675)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCC-cCCCCEEEEEec
Confidence 4599999999999999999999999999999999999999999999999999 999999999864
No 40
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=99.02 E-value=3.3e-10 Score=84.29 Aligned_cols=69 Identities=26% Similarity=0.319 Sum_probs=61.8
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCcee-----------------------------eEecCCCeEEEEEEecCCC
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVM-----------------------------SFETEEEGILAKILVPENT 106 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~-----------------------------~i~ap~~G~v~~i~v~~Gd 106 (219)
..|+|.+|+|++||.|++||+|+.|++.++.. .|+||.+|+|.++.+..|+
T Consensus 8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~ 87 (116)
T 2k32_A 8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD 87 (116)
T ss_dssp SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence 35999999999999999999999999886553 8999999999999999999
Q ss_pred eeeecC-cEEEEEeecCccc
Q psy10439 107 TDVKVG-TLIAVMVEEGEDW 125 (219)
Q Consensus 107 ~~V~~G-~~l~~i~~~~~~~ 125 (219)
. |..| ++|+.|.+...-+
T Consensus 88 ~-v~~g~~~l~~i~~~~~~~ 106 (116)
T 2k32_A 88 Y-VSASTTELVRVTNLNPIY 106 (116)
T ss_dssp E-ECTTTSCCEEEECSCTHH
T ss_pred E-EcCCCcEEEEEECCCeEE
Confidence 9 9998 9999998765443
No 41
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=98.94 E-value=1.1e-09 Score=77.16 Aligned_cols=46 Identities=22% Similarity=0.450 Sum_probs=43.0
Q ss_pred ccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
..|.|.+|++++||.|++||+|+.+|+||+..+|.||++|+|.+++
T Consensus 12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~ 57 (84)
T 2kcc_A 12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK 57 (84)
T ss_dssp SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc
Confidence 3478999999999999999999999999999999999999999864
No 42
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.93 E-value=2.5e-10 Score=108.97 Aligned_cols=62 Identities=24% Similarity=0.352 Sum_probs=59.8
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i 118 (219)
..|+|.+|+|++||.|++||+|++||+||+..+|+||.+|+|.++++++|+. |..|++|+.|
T Consensus 656 ~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i 717 (718)
T 3bg3_A 656 MPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMT-LEGDDLILEI 717 (718)
T ss_dssp SCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEE-ECSSCEEECB
T ss_pred CCeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCE-eCCCCEEEEe
Confidence 3699999999999999999999999999999999999999999999999999 9999999875
No 43
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.90 E-value=1.9e-09 Score=82.87 Aligned_cols=71 Identities=20% Similarity=0.217 Sum_probs=59.6
Q ss_pred EEecCCCCCCCceEEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEE---EecCCCeeee---cCc-EEE
Q psy10439 45 EIKMPSLSPTMTEGTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKI---LVPENTTDVK---VGT-LIA 116 (219)
Q Consensus 45 ~i~~P~~~~~~~~g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i---~v~~Gd~~V~---~G~-~l~ 116 (219)
.+.+|.+| .|..+.+ ++||.|++||.||.||++|+..+|.||.+|+|.++ ++..|+. |. .|+ .|+
T Consensus 38 ~~a~~~lG------~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~-Vn~dp~g~GwL~ 110 (136)
T 1zko_A 38 NHAQEQLG------DVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPEL-INKDPEGEGWLF 110 (136)
T ss_dssp HHHHHHHC------SEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTH-HHHCTTTTTCCE
T ss_pred hhhcccCC------CcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccC-cccCCCCCeEEE
Confidence 44566664 3555555 99999999999999999999999999999999999 6788998 98 787 888
Q ss_pred EEeecC
Q psy10439 117 VMVEEG 122 (219)
Q Consensus 117 ~i~~~~ 122 (219)
.|....
T Consensus 111 ~i~~~~ 116 (136)
T 1zko_A 111 KMEISD 116 (136)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 887543
No 44
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.90 E-value=8.3e-10 Score=110.58 Aligned_cols=63 Identities=30% Similarity=0.476 Sum_probs=54.1
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~ 119 (219)
..|+|.+|+|++||.|++||+|++||+||+..+|+||.+|+|.++++++|+. |..|++|+.|.
T Consensus 1102 ~~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1102 MPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQ-IDAKDLLAVYG 1164 (1165)
T ss_dssp SCEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCE-ECTTBEEEEC-
T ss_pred CCeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEec
Confidence 3699999999999999999999999999999999999999999999999999 99999999874
No 45
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=98.88 E-value=1e-10 Score=117.56 Aligned_cols=54 Identities=26% Similarity=0.286 Sum_probs=47.6
Q ss_pred CceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 160 PGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 160 ~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
....+..|.. |+|.+|+|++||.|++||+|++||+||+.++|.||.+|+|.+|+
T Consensus 1166 ~~~~v~ap~~------G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~ 1219 (1236)
T 3va7_A 1166 DAELLYSEYT------GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKIL 1219 (1236)
T ss_dssp TCEEEECSSC------EEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred CCcEEeCCCc------EEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEE
Confidence 3445666633 77999999999999999999999999999999999999999985
No 46
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=98.84 E-value=4.1e-10 Score=79.46 Aligned_cols=51 Identities=24% Similarity=0.395 Sum_probs=46.1
Q ss_pred eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
.+.+|.+ |.|.+|++++||.|++||+|+.+|++|+..+|.||++|+|.+++
T Consensus 4 ~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~ 54 (85)
T 2k7v_A 4 EVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELK 54 (85)
T ss_dssp CCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEEC
T ss_pred EEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEE
Confidence 4567766 78999999999999999999999999999999999999998763
No 47
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=98.80 E-value=1e-08 Score=69.52 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=42.2
Q ss_pred cceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
.|.|.+|++++||.|++||+|+.+|++|+..+|.||++|+|.++
T Consensus 7 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~ 50 (72)
T 1z6h_A 7 AGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEV 50 (72)
T ss_dssp SEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEE
T ss_pred cEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEE
Confidence 58899999999999999999999999999999999999999876
No 48
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=98.76 E-value=7.8e-09 Score=71.78 Aligned_cols=43 Identities=28% Similarity=0.424 Sum_probs=39.3
Q ss_pred eeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 177 TIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 177 ~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
.+.+|++++||.|++||+|+.+|++|+..+|.||++|+|.+++
T Consensus 21 ~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~ 63 (80)
T 1bdo_A 21 PDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAIL 63 (80)
T ss_dssp TTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred cCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEE
Confidence 3456799999999999999999999999999999999999863
No 49
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=1.2e-08 Score=74.18 Aligned_cols=43 Identities=21% Similarity=0.483 Sum_probs=41.1
Q ss_pred ccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEE
Q psy10439 174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILA 216 (219)
Q Consensus 174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~ 216 (219)
..|.|.+|++++||.|++||+|+.+|+||+..+|.||++|+|.
T Consensus 24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~ 66 (100)
T 2dn8_A 24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK 66 (100)
T ss_dssp SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE
Confidence 3588999999999999999999999999999999999999997
No 50
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=98.71 E-value=5.5e-08 Score=66.74 Aligned_cols=45 Identities=29% Similarity=0.443 Sum_probs=42.3
Q ss_pred ccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
..|.|.+|++++||.|++||+|+.++++|+..+|.||++|+|.++
T Consensus 15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~ 59 (77)
T 1dcz_A 15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKV 59 (77)
T ss_dssp SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEE
T ss_pred CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEE
Confidence 347899999999999999999999999999999999999999875
No 51
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=98.70 E-value=6.3e-09 Score=74.85 Aligned_cols=45 Identities=29% Similarity=0.445 Sum_probs=25.6
Q ss_pred ccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
..|.|.+|++++||.|++||+|+.+|++|+..+|.||++|+|.++
T Consensus 32 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~ 76 (94)
T 2jku_A 32 MPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSV 76 (94)
T ss_dssp SSCEEEEECCCTTCCCCTTCCCEEEEC------------------
T ss_pred CCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEE
Confidence 458899999999999999999999999999999999999999875
No 52
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=98.67 E-value=4.4e-08 Score=66.53 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=42.3
Q ss_pred ccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
..|.+.+|++++||.|++||+|+.++++|...+|.||.+|+|.++
T Consensus 12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~ 56 (74)
T 2d5d_A 12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRI 56 (74)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEE
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEE
Confidence 348899999999999999999999999999999999999999875
No 53
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.66 E-value=3.9e-08 Score=93.68 Aligned_cols=44 Identities=36% Similarity=0.499 Sum_probs=42.4
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
|+|.+|+|++||.|++||+|++||+||+.++|.||.+|+|.+|+
T Consensus 621 G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~ 664 (681)
T 3n6r_A 621 GLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKIN 664 (681)
T ss_dssp EEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEEC
T ss_pred EEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEE
Confidence 78999999999999999999999999999999999999999874
No 54
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.64 E-value=4.2e-08 Score=75.26 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=38.4
Q ss_pred ceeeeEee-cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLK-KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
|.|..+.+ ++||.|++||+||+||+||+.++|.||.+|+|.+|
T Consensus 45 G~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~ei 88 (136)
T 1zko_A 45 GDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEV 88 (136)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEE
T ss_pred CCcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEE
Confidence 34555544 99999999999999999999999999999999987
No 55
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.61 E-value=6.3e-08 Score=73.85 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=39.7
Q ss_pred ceeeeEee-cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 176 GTIVKWLK-KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 176 ~~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
|.|..+.+ ++|+.|++||+||+||+||+.++|.||.+|+|.+|.
T Consensus 36 G~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn 80 (131)
T 1hpc_A 36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVN 80 (131)
T ss_dssp CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEEC
T ss_pred CCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEh
Confidence 44666666 999999999999999999999999999999999873
No 56
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=98.58 E-value=7e-08 Score=69.90 Aligned_cols=45 Identities=31% Similarity=0.437 Sum_probs=42.5
Q ss_pred ccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
..|.|.+|++++||.|++||+|+.++++|+..+|.||++|+|.++
T Consensus 21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~ 65 (99)
T 2ejm_A 21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKV 65 (99)
T ss_dssp SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEE
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEE
Confidence 358899999999999999999999999999999999999999875
No 57
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.58 E-value=9.3e-08 Score=72.65 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=38.8
Q ss_pred ceeeeEee-cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 176 GTIVKWLK-KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 176 ~~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
|.|..+.+ ++|+.|++||.||+||++|+.++|.||.+|+|.+|.
T Consensus 36 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn 80 (128)
T 1onl_A 36 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVN 80 (128)
T ss_dssp CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEEC
T ss_pred CCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEh
Confidence 44555544 999999999999999999999999999999999873
No 58
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.58 E-value=3e-08 Score=75.69 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=55.1
Q ss_pred eEEecCCCCCCCceEEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC---eeee---cCc-EE
Q psy10439 44 QEIKMPSLSPTMTEGTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT---TDVK---VGT-LI 115 (219)
Q Consensus 44 ~~i~~P~~~~~~~~g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd---~~V~---~G~-~l 115 (219)
+.+.+|.+ |.|+.+.+ ++||.|++||.||.||++|+..+|.||.+|+|.+++.+.++ . |. -|+ -|
T Consensus 28 td~a~~~l------G~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~l-vn~dpy~~gWl 100 (131)
T 1hpc_A 28 TDHAQDHL------GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGL-INSSPYEDGWM 100 (131)
T ss_dssp CHHHHHHH------CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTH-HHHCTTTTTCC
T ss_pred ehhhcccC------CCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhh-hccCCCCCceE
Confidence 44455655 45777777 99999999999999999999999999999999999865544 4 43 233 67
Q ss_pred EEEeec
Q psy10439 116 AVMVEE 121 (219)
Q Consensus 116 ~~i~~~ 121 (219)
+.|...
T Consensus 101 ~~i~~~ 106 (131)
T 1hpc_A 101 IKIKPT 106 (131)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 777643
No 59
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.56 E-value=7.5e-08 Score=73.18 Aligned_cols=71 Identities=17% Similarity=0.081 Sum_probs=54.3
Q ss_pred eEEecCCCCCCCceEEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC---eeee---cCc-EE
Q psy10439 44 QEIKMPSLSPTMTEGTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT---TDVK---VGT-LI 115 (219)
Q Consensus 44 ~~i~~P~~~~~~~~g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd---~~V~---~G~-~l 115 (219)
+.+.+|.+| .|+.+.+ ++||.|++||.||.||++|+..+|.||.+|+|.+++...++ . |. -|+ -|
T Consensus 29 td~a~~~lG------~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~l-vn~dpy~~gWl 101 (128)
T 3a7l_A 29 TEHAQELLG------DMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPEL-VNSEPYAGGWI 101 (128)
T ss_dssp CHHHHHHHC------SEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTH-HHHCTTTTTCC
T ss_pred ehHHhccCC------ceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHH-hccCCCCCccE
Confidence 445566664 4666655 99999999999999999999999999999999999875443 3 33 343 66
Q ss_pred EEEeec
Q psy10439 116 AVMVEE 121 (219)
Q Consensus 116 ~~i~~~ 121 (219)
+.+...
T Consensus 102 ~~i~~~ 107 (128)
T 3a7l_A 102 FKIKAS 107 (128)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 666543
No 60
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.55 E-value=1.2e-07 Score=72.09 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=38.9
Q ss_pred ceeeeEee-cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 176 GTIVKWLK-KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 176 ~~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
|.|..+.+ ++|+.|++||.||+||++|+.++|.||.+|+|.+|.
T Consensus 37 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN 81 (128)
T 3a7l_A 37 GDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVN 81 (128)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred CceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEh
Confidence 44555544 899999999999999999999999999999999873
No 61
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.55 E-value=1.4e-07 Score=94.36 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=42.4
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
|.|.+|+|++||.|++||+|+++|+||+.++|.||.+|+|.+|+
T Consensus 1086 G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~ 1129 (1150)
T 3hbl_A 1086 GSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVT 1129 (1150)
T ss_dssp EEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEEC
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEE
Confidence 78999999999999999999999999999999999999999874
No 62
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.50 E-value=1.4e-07 Score=71.61 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=54.4
Q ss_pred eEEecCCCCCCCceEEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEec---CCCeee---ecCc-EE
Q psy10439 44 QEIKMPSLSPTMTEGTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP---ENTTDV---KVGT-LI 115 (219)
Q Consensus 44 ~~i~~P~~~~~~~~g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~---~Gd~~V---~~G~-~l 115 (219)
+.+.+|.+| .|..+.+ ++||+|++||.||.||++|+..+|.||.+|+|.+++.. ..+. + +-|+ -|
T Consensus 28 t~~a~~~lG------~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~l-vn~dpy~~gWl 100 (128)
T 1onl_A 28 TDYAQDALG------DVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPEL-VNQDPYGEGWI 100 (128)
T ss_dssp CHHHHHHHC------SEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTH-HHHCTTTTTCC
T ss_pred ehHHhhcCC------CceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhh-hccCCCCCccE
Confidence 444556664 4666655 99999999999999999999999999999999999864 3443 4 3454 67
Q ss_pred EEEeec
Q psy10439 116 AVMVEE 121 (219)
Q Consensus 116 ~~i~~~ 121 (219)
+.+...
T Consensus 101 ~~i~~~ 106 (128)
T 1onl_A 101 FRLKPR 106 (128)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 777643
No 63
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.42 E-value=2.8e-08 Score=94.54 Aligned_cols=44 Identities=25% Similarity=0.425 Sum_probs=0.0
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
|+|.+|+|++||.|++||+|++||+||+.++|.||.+|+|.+|+
T Consensus 611 G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~ 654 (675)
T 3u9t_A 611 GSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALY 654 (675)
T ss_dssp --------------------------------------------
T ss_pred EEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEE
Confidence 67999999999999999999999999999999999999999874
No 64
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=98.23 E-value=1.9e-06 Score=77.25 Aligned_cols=67 Identities=15% Similarity=0.259 Sum_probs=58.7
Q ss_pred ceEEEEEEEe-CCCCeEcCCCeEEEEecc------------------------------------------------Cce
Q psy10439 56 TEGTIVKWLK-KEGDAVAPGDVLCEIQTD------------------------------------------------KAV 86 (219)
Q Consensus 56 ~~g~i~~w~v-~~Gd~V~~gd~l~~iet~------------------------------------------------K~~ 86 (219)
..|.|.+++| ++||.|++||+|++|++. ...
T Consensus 128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~ 207 (413)
T 3ne5_B 128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR 207 (413)
T ss_dssp SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence 3599999998 999999999999999942 124
Q ss_pred eeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439 87 MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE 123 (219)
Q Consensus 87 ~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~ 123 (219)
..|+||++|+|.++.+..|+. |..|++|+.|.+...
T Consensus 208 ~~I~AP~~G~V~~~~v~~G~~-V~~G~~l~~I~~~~~ 243 (413)
T 3ne5_B 208 FTLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQGMDP 243 (413)
T ss_dssp EEEECSSSEEEEECCCCTTCE-ECTTSCSEEEEEEEE
T ss_pred EEEEcCCCeEEEEEEcCCCCE-ECCCCcEEEEeCCCe
Confidence 579999999999999999999 999999999976543
No 65
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.21 E-value=8.1e-07 Score=84.86 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=42.5
Q ss_pred cceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
.|.|.+|+|++||.|++||+|+++|+||+.++|.||.+|+|.+|+
T Consensus 657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~ 701 (718)
T 3bg3_A 657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVH 701 (718)
T ss_dssp CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCC
T ss_pred CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEe
Confidence 388999999999999999999999999999999999999998763
No 66
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=98.21 E-value=1.7e-06 Score=75.53 Aligned_cols=66 Identities=20% Similarity=0.303 Sum_probs=58.4
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccCc---------------------------------------------------
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA--------------------------------------------------- 85 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~--------------------------------------------------- 85 (219)
.|+|.+++|++||.|++||+|+.|++...
T Consensus 65 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~ 144 (359)
T 3lnn_A 65 AGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASE 144 (359)
T ss_dssp CEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHHH
T ss_pred CEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999987532
Q ss_pred -------------------------eeeEecCCCeEEEEEEecCCCeeeec-CcEEEEEeecCc
Q psy10439 86 -------------------------VMSFETEEEGILAKILVPENTTDVKV-GTLIAVMVEEGE 123 (219)
Q Consensus 86 -------------------------~~~i~ap~~G~v~~i~v~~Gd~~V~~-G~~l~~i~~~~~ 123 (219)
...|+||++|+|..+.+..|+. |.. |++|+.|.+...
T Consensus 145 l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~~g~~l~~i~~~~~ 207 (359)
T 3lnn_A 145 SQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAY-WNDTTASLMTVADLSH 207 (359)
T ss_dssp HHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCE-ECCSSCCSEEEECCSE
T ss_pred HHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCce-eCCCCcceEEEecCCe
Confidence 2469999999999999999999 998 999999876543
No 67
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=98.21 E-value=5.4e-07 Score=76.02 Aligned_cols=66 Identities=27% Similarity=0.322 Sum_probs=57.7
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccC----------------------------------------------------
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDK---------------------------------------------------- 84 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K---------------------------------------------------- 84 (219)
.|+|.+++|++||.|++||+|+.|++..
T Consensus 30 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~ 109 (277)
T 2f1m_A 30 SGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQ 109 (277)
T ss_dssp CEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHH
T ss_pred cEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 4999999999999999999999998731
Q ss_pred -------------------ceeeEecCCCeEEEEEEecCCCeeeecC--cEEEEEeecCc
Q psy10439 85 -------------------AVMSFETEEEGILAKILVPENTTDVKVG--TLIAVMVEEGE 123 (219)
Q Consensus 85 -------------------~~~~i~ap~~G~v~~i~v~~Gd~~V~~G--~~l~~i~~~~~ 123 (219)
....|+||++|+|..+.+..|+. |..| ++|+.|.+...
T Consensus 110 a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~-v~~g~~~~l~~i~~~~~ 168 (277)
T 2f1m_A 110 ANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQLDP 168 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCE-ECTTCSSCSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCE-EcCCCCceeEEEecCCc
Confidence 12479999999999999999999 9999 58999876543
No 68
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=98.19 E-value=1.8e-06 Score=74.91 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=56.6
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccC----------------------------------------------------
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDK---------------------------------------------------- 84 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K---------------------------------------------------- 84 (219)
.|+|.+++|++||.|++||+|+.|++..
T Consensus 39 ~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~ 118 (341)
T 3fpp_A 39 SGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDN 118 (341)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHH
T ss_pred CcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHH
Confidence 4999999999999999999999998741
Q ss_pred ---------------------------------ceeeEecCCCeEEEEEEecCCCeeeecCcE---EEEEeecC
Q psy10439 85 ---------------------------------AVMSFETEEEGILAKILVPENTTDVKVGTL---IAVMVEEG 122 (219)
Q Consensus 85 ---------------------------------~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~---l~~i~~~~ 122 (219)
....|+||++|+|.++.+..|+. |..|++ |+.|.+..
T Consensus 119 a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~~~~ 191 (341)
T 3fpp_A 119 AATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADMS 191 (341)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCE-ECCTTSCCCCEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCE-EecCCCCceEEEEecCC
Confidence 01459999999999999999999 999987 88887544
No 69
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=98.15 E-value=4e-06 Score=63.25 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=38.4
Q ss_pred ceeeeEee-cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLK-KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
|.|.-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.++
T Consensus 32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~Vvev 75 (125)
T 3klr_A 32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEI 75 (125)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE
T ss_pred CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEE
Confidence 55665544 78999999999999999999999999999999987
No 70
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.14 E-value=1.4e-06 Score=87.39 Aligned_cols=45 Identities=33% Similarity=0.545 Sum_probs=36.5
Q ss_pred cceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439 175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219 (219)
Q Consensus 175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~ 219 (219)
.|.|.+|+|++||.|++||+|+++|+||+.++|.||.+|+|.+|+
T Consensus 1103 ~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~ 1147 (1165)
T 2qf7_A 1103 PGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVL 1147 (1165)
T ss_dssp CEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEEC
T ss_pred CeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEE
Confidence 378999999999999999999999999999999999999998864
No 71
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=98.09 E-value=4.8e-06 Score=62.80 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=43.4
Q ss_pred EEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC
Q psy10439 58 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 106 (219)
Q Consensus 58 g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd 106 (219)
|.|+.+.. ++|+.|++||.++.||++|+..+|.||.+|+|.+++....+
T Consensus 32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~ 81 (125)
T 3klr_A 32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAE 81 (125)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTT
T ss_pred CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhh
Confidence 67777766 78999999999999999999999999999999999865544
No 72
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=98.04 E-value=8.9e-06 Score=62.57 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=37.8
Q ss_pred ceeeeEee-cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLK-KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
|.|.-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.+|
T Consensus 54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~Vvev 97 (143)
T 3mxu_A 54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEI 97 (143)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE
T ss_pred CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEE
Confidence 44555433 78999999999999999999999999999999987
No 73
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.99 E-value=8.8e-06 Score=62.24 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=37.9
Q ss_pred ceeeeEee-cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLK-KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
|.|.-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.++
T Consensus 49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~Vvev 92 (137)
T 3tzu_A 49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEV 92 (137)
T ss_dssp CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEE
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEe
Confidence 45555433 79999999999999999999999999999999987
No 74
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.97 E-value=1.1e-05 Score=62.06 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=42.7
Q ss_pred EEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC
Q psy10439 58 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 106 (219)
Q Consensus 58 g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd 106 (219)
|.|+-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.+++-...+
T Consensus 54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d 103 (143)
T 3mxu_A 54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAE 103 (143)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhh
Confidence 66666655 78999999999999999999999999999999999865543
No 75
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=97.94 E-value=3.3e-06 Score=74.41 Aligned_cols=65 Identities=26% Similarity=0.344 Sum_probs=56.7
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccC----------------------------------------------------
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDK---------------------------------------------------- 84 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K---------------------------------------------------- 84 (219)
.|+|.+++|++||.|++||+|+.|+...
T Consensus 51 ~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~~ 130 (369)
T 1vf7_A 51 NGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQ 130 (369)
T ss_dssp CEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999998632
Q ss_pred -----ceeeEecCCCeEEEEEEecCCCeeeecC--cEEEEEeecC
Q psy10439 85 -----AVMSFETEEEGILAKILVPENTTDVKVG--TLIAVMVEEG 122 (219)
Q Consensus 85 -----~~~~i~ap~~G~v~~i~v~~Gd~~V~~G--~~l~~i~~~~ 122 (219)
....|+||++|+|..+.+..|+. |..| ++|+.|.+..
T Consensus 131 a~~~l~~~~I~AP~~G~V~~~~v~~G~~-V~~g~g~~l~~i~~~~ 174 (369)
T 1vf7_A 131 ARINLRYTKVLSPISGRIGRSAVTEGAL-VTNGQANAMATVQQLD 174 (369)
T ss_dssp HHHHHHTTEEECSSSEEECCCSSCBTCE-ECTTCSSCSEEEECCS
T ss_pred HHHhhcCCEEECCCCeEEEEEEcCCCCe-EcCCCCceeEEEecCC
Confidence 12479999999999999999999 9995 8899887543
No 76
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=97.93 E-value=8.4e-06 Score=60.11 Aligned_cols=45 Identities=31% Similarity=0.428 Sum_probs=40.0
Q ss_pred ccceeeeEeecCCCeecCCCeEEEEeecceee-----------------------------eeeCCCCeEEEEc
Q psy10439 174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVM-----------------------------SFETEEEGILAKI 218 (219)
Q Consensus 174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~-----------------------------~i~a~~~G~v~~i 218 (219)
..|.|.+|++++||.|++||+|+.+++.++.. .|.||++|+|.++
T Consensus 8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~ 81 (116)
T 2k32_A 8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDA 81 (116)
T ss_dssp SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCC
T ss_pred CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEE
Confidence 35899999999999999999999999986654 8999999999764
No 77
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.92 E-value=1.1e-05 Score=61.73 Aligned_cols=46 Identities=20% Similarity=0.342 Sum_probs=41.0
Q ss_pred EEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEec
Q psy10439 58 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103 (219)
Q Consensus 58 g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~ 103 (219)
|.|+.+.. ++|++|++||.++.||++|+..+|.||.+|+|.+++-.
T Consensus 49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~~ 95 (137)
T 3tzu_A 49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNTA 95 (137)
T ss_dssp CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECHH
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehhh
Confidence 66766655 78999999999999999999999999999999998743
No 78
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.73 E-value=6e-05 Score=58.65 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=37.3
Q ss_pred ceeeeEe-ecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWL-KKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~-v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i 218 (219)
|.|.-+. .++|+.|++||.++.||+.|+..+|.||.+|+|.++
T Consensus 59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~Vvev 102 (155)
T 3hgb_A 59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEV 102 (155)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEE
Confidence 4454432 278999999999999999999999999999999987
No 79
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.71 E-value=5.3e-05 Score=58.95 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=40.1
Q ss_pred EEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEe
Q psy10439 58 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 102 (219)
Q Consensus 58 g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v 102 (219)
|.|+-+.. ++|+.|++||.++.||+.|+..+|.||.+|.|.+++-
T Consensus 59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~ 104 (155)
T 3hgb_A 59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS 104 (155)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence 56666655 7899999999999999999999999999999988874
No 80
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=97.60 E-value=2.8e-06 Score=74.30 Aligned_cols=64 Identities=27% Similarity=0.378 Sum_probs=54.8
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCc--------------------------------------------------
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKA-------------------------------------------------- 85 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~-------------------------------------------------- 85 (219)
..|+|.+++|++||.|++||+|++|++...
T Consensus 39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 118 (369)
T 4dk0_A 39 VSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN 118 (369)
T ss_dssp SCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH
T ss_pred CCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence 359999999999999999999999987420
Q ss_pred -----------------------------------eeeEecCCCeEEEEEEecCCCeeeecCcE---EEEEee
Q psy10439 86 -----------------------------------VMSFETEEEGILAKILVPENTTDVKVGTL---IAVMVE 120 (219)
Q Consensus 86 -----------------------------------~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~---l~~i~~ 120 (219)
...|+||++|+|.++.+..|+. |..|++ |+.+.+
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~~ 190 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQT-VNSNQTTPTIIKVAD 190 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCB-CCTTTSCCCCBBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCC-ccCCCCcceEEEEcC
Confidence 1349999999999999999999 999998 666544
No 81
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=97.08 E-value=0.0024 Score=51.26 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=27.7
Q ss_pred EEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEE
Q psy10439 62 KWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAK 99 (219)
Q Consensus 62 ~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~ 99 (219)
.++|+.|+.|++||.||+-. .|-+..+|++.+
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d 53 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD 53 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEEEe
Confidence 67899999999999999866 788888888843
No 82
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=97.02 E-value=0.0026 Score=55.73 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=52.3
Q ss_pred EEEEEEeCCCCeEcCCCeEEEEec----cCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 59 TIVKWLKKEGDAVAPGDVLCEIQT----DKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 59 ~i~~w~v~~Gd~V~~gd~l~~iet----~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
-+.+..++.||.|++||+|+.|.. .+...+|.||.+|+|..+. .... |..|+.|+.|....
T Consensus 276 G~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~-V~~Gd~l~~ia~~~ 340 (354)
T 3cdx_A 276 GLFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGR-VTRGDAVAVVMEDY 340 (354)
T ss_dssp EEEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSE-ECTTCEEEEEEEEC
T ss_pred EEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCc-cCCCCEEEEEeeec
Confidence 377888999999999999999997 4778999999999998665 6667 99999999986543
No 83
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=96.99 E-value=0.0026 Score=55.30 Aligned_cols=61 Identities=18% Similarity=0.311 Sum_probs=50.8
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEecc----CceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQTD----KAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet~----K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
+-+.+.+++.||.|++||+|++|... ....+|+||.+|+|..... .-. |..|+.|+.|...
T Consensus 265 ~Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~--~~~-V~~G~~l~~Ia~~ 329 (331)
T 3na6_A 265 DGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHF--PGM-IKSGDCAAVIGVV 329 (331)
T ss_dssp CEEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEEC--SSE-ECTTCEEEEEECB
T ss_pred CeEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeC--CCc-cCCCCEEEEEecc
Confidence 44778899999999999999999973 4578999999999987654 456 8999999998643
No 84
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=96.83 E-value=0.0055 Score=53.76 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=26.8
Q ss_pred EEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEE
Q psy10439 62 KWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILA 98 (219)
Q Consensus 62 ~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~ 98 (219)
.++|+.||.|++||.||+-. .|-+..+|+|.
T Consensus 62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~ 92 (352)
T 2xhc_A 62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV 92 (352)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred EEEecCCCEEcCCCEEEEec------cEEEecceEEE
Confidence 68999999999999999966 77778888774
No 85
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=96.74 E-value=0.004 Score=54.91 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=51.3
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEec------cCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQT------DKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE 120 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet------~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~ 120 (219)
.+-|.+.+++.||.|++||+|++|.. .....+|+||.+|+|.-.... -. |..|+.|+.|..
T Consensus 297 ~~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~~--p~-V~~G~~l~~i~~ 363 (368)
T 3fmc_A 297 KAGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFAS--AS-VHQGTELYKVMT 363 (368)
T ss_dssp SCEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECSS--SE-ECTTCEEEEEEE
T ss_pred CCEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeCC--Cc-cCCCCEEEEEee
Confidence 35566799999999999999999997 456789999999999777644 56 999999998864
No 86
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=96.31 E-value=0.038 Score=44.23 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=38.3
Q ss_pred EEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCe
Q psy10439 62 KWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 107 (219)
Q Consensus 62 ~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~ 107 (219)
.++|+.||.|++|+.||+. |..+..|-+..+|+|.=-.+.+|..
T Consensus 63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t 106 (190)
T 2auk_A 63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT 106 (190)
T ss_dssp EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTT
T ss_pred EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcc
Confidence 6799999999999999976 6899999999999997776666654
No 87
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=96.21 E-value=0.016 Score=49.71 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=40.5
Q ss_pred eCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 65 KKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 65 v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
++.|+.-..=..-..|+.. ....|.++.+|+|.++++++|+. |+.|++|+.|...
T Consensus 11 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~-V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 11 VRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDK-VKKDQLLGVIDPE 65 (341)
T ss_dssp --CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCE-ECTTCEEEEECCH
T ss_pred EEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCE-ECCCCEEEEEChH
Confidence 3444433333334455554 46789999999999999999999 9999999999754
No 88
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=96.05 E-value=0.0022 Score=57.16 Aligned_cols=118 Identities=13% Similarity=0.133 Sum_probs=68.4
Q ss_pred eEEEEecc-CceeeEecCCCeEEEEEEe-cCCCeeeecCcEEEEEeecCccccc--ccccc-CCCCc-c-cc-----CCC
Q psy10439 76 VLCEIQTD-KAVMSFETEEEGILAKILV-PENTTDVKVGTLIAVMVEEGEDWQN--VSVSA-TSPSA-T-AS-----ASS 143 (219)
Q Consensus 76 ~l~~iet~-K~~~~i~ap~~G~v~~i~v-~~Gd~~V~~G~~l~~i~~~~~~~~~--~~~~~-~~~a~-~-a~-----a~a 143 (219)
....|+.+ .....|.++.+|+|.++++ ++|+. |+.|++|+.|...+-..+. ..... -.... . .. ...
T Consensus 110 ~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~-VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~ 188 (413)
T 3ne5_B 110 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDK-VQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLA 188 (413)
T ss_dssp EEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCE-ECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred EEEEEEECCCceEEEecccCEEEEEEEeCCCCCE-EcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Confidence 34455543 4467899999999999998 99999 9999999999744311000 00000 00000 0 00 000
Q ss_pred CCCCCCCCC-CCCCCCCCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEee
Q psy10439 144 ASPPPPPPA-PSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQT 200 (219)
Q Consensus 144 ~a~~~a~~~-aa~~~~~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~ 200 (219)
......-+. ...........+..| -.|.|.+..+.+|+.|..|++|+.|-.
T Consensus 189 ~~~~~~~~~l~~~~~~~~~~~I~AP------~~G~V~~~~v~~G~~V~~G~~l~~I~~ 240 (413)
T 3ne5_B 189 GMPEADIRRLIATQKIQTRFTLKAP------IDGVITAFDLRAGMNIAKDNVVAKIQG 240 (413)
T ss_dssp TCCHHHHHHHHHHTSCCCEEEEECS------SSEEEEECCCCTTCEECTTSCSEEEEE
T ss_pred CCCHHHHHHHHHhccccccEEEEcC------CCeEEEEEEcCCCCEECCCCcEEEEeC
Confidence 000000000 000111224567777 457899999999999999999999953
No 89
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=95.77 E-value=0.0076 Score=47.12 Aligned_cols=59 Identities=27% Similarity=0.322 Sum_probs=50.2
Q ss_pred ceEEEEEEEeCCCCeEcC----CCeEEEEeccCceeeEecCCCeEEEEE-------------------------------
Q psy10439 56 TEGTIVKWLKKEGDAVAP----GDVLCEIQTDKAVMSFETEEEGILAKI------------------------------- 100 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~----gd~l~~iet~K~~~~i~ap~~G~v~~i------------------------------- 100 (219)
-.|+|..+. +..|.+-. |+.++..-++ ..++||.+|+|..+
T Consensus 19 ~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~ 94 (161)
T 1f3z_A 19 LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE 94 (161)
T ss_dssp SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTT
T ss_pred CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCC
Confidence 349998876 77888766 8888888775 57899999999988
Q ss_pred ----EecCCCeeeecCcEEEEEe
Q psy10439 101 ----LVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 101 ----~v~~Gd~~V~~G~~l~~i~ 119 (219)
+++.||. |..|++|+.+.
T Consensus 95 gF~~~V~~Gd~-V~~G~~L~~~d 116 (161)
T 1f3z_A 95 GFKRIAEEGQR-VKVGDTVIEFD 116 (161)
T ss_dssp TEEECSCTTCE-ECTTCEEEEEC
T ss_pred ccEEEEeCcCE-ECCCCEEEEEC
Confidence 8899999 99999999884
No 90
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=95.65 E-value=0.048 Score=47.07 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=48.7
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEec----cCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQT----DKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE 120 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet----~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~ 120 (219)
+.+...+++.|+.|++||+|+++-. .....+|.||.+|+|.-.. .... |..|+.|+.|..
T Consensus 265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~-V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMY-VQGNEEVAILAR 328 (332)
T ss_dssp SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEE-ECTTCEEEEEEE
T ss_pred CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCe-eCCCCEEEEEee
Confidence 4466688999999999999999965 4567889999999996665 4456 889999988854
No 91
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=95.34 E-value=0.011 Score=45.87 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=49.2
Q ss_pred eEEEEEEEeCCCCeEcC----CCeEEEEeccCceeeEecCCCeEEEE---------------------------------
Q psy10439 57 EGTIVKWLKKEGDAVAP----GDVLCEIQTDKAVMSFETEEEGILAK--------------------------------- 99 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~----gd~l~~iet~K~~~~i~ap~~G~v~~--------------------------------- 99 (219)
.|+|..+. +..|.+-. |+.++...++ ..++||.+|+|..
T Consensus 15 ~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~g 90 (154)
T 2gpr_A 15 DGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNG 90 (154)
T ss_dssp SEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCS
T ss_pred CeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCc
Confidence 48998875 77888766 8889888875 5899999999998
Q ss_pred --EEecCCCeeeecCcEEEEEe
Q psy10439 100 --ILVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 100 --i~v~~Gd~~V~~G~~l~~i~ 119 (219)
++++.||. |+.|++|+.+.
T Consensus 91 F~~~V~~Gd~-V~~G~~L~~~d 111 (154)
T 2gpr_A 91 FESFVTQDQE-VNAGDKLVTVD 111 (154)
T ss_dssp EEECCCTTCE-ECTTCEEEEEC
T ss_pred eEEEEcCCCE-EcCCCEEEEEC
Confidence 48899999 99999999884
No 92
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=95.09 E-value=0.012 Score=46.08 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=49.6
Q ss_pred ceEEEEEEEeCCCCeEcC----CCeEEEEeccCceeeEecCCCeEEEEE-------------------------------
Q psy10439 56 TEGTIVKWLKKEGDAVAP----GDVLCEIQTDKAVMSFETEEEGILAKI------------------------------- 100 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~----gd~l~~iet~K~~~~i~ap~~G~v~~i------------------------------- 100 (219)
-.|+|+.+ .+..|.+-. |+.++..-+ ...++||.+|+|..+
T Consensus 19 ~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~ 94 (162)
T 1ax3_A 19 ITGEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGE 94 (162)
T ss_dssp CSEEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTT
T ss_pred CceEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCC
Confidence 35999987 677888766 888887776 457899999999988
Q ss_pred ----EecCCCeeeecCcEEEEEe
Q psy10439 101 ----LVPENTTDVKVGTLIAVMV 119 (219)
Q Consensus 101 ----~v~~Gd~~V~~G~~l~~i~ 119 (219)
+++.||. |+.|++|+.+.
T Consensus 95 gF~~~V~~Gd~-V~~G~~L~~~d 116 (162)
T 1ax3_A 95 GFTSFVSEGDR-VEPGQKLLEVD 116 (162)
T ss_dssp TEEESCCCCSE-ECSEEEEEEEC
T ss_pred ccEEEEeCCCE-EcCCCEEEEEC
Confidence 8889999 99999999884
No 93
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=94.96 E-value=0.023 Score=47.32 Aligned_cols=45 Identities=11% Similarity=0.170 Sum_probs=37.8
Q ss_pred CeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 75 DVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 75 d~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
..-..|+.. ....|.++.+|+|.++++++|+. |+.|++|+.|...
T Consensus 12 ~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~-V~kGq~L~~ld~~ 56 (277)
T 2f1m_A 12 ELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSD-IEAGVSLYQIDPA 56 (277)
T ss_dssp EEEEEEECS-EEEEECCSSCEEEEEECSCTTCE-ECTTSCSEEECCH
T ss_pred EEEEEEEee-eEEEEEccccEEEEEEEcCCCCE-ecCCCEEEEECcH
Confidence 344566654 46789999999999999999999 9999999999754
No 94
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=94.75 E-value=0.038 Score=47.87 Aligned_cols=41 Identities=17% Similarity=0.418 Sum_probs=35.7
Q ss_pred eeeeEeecCCCeecCCCeEEEEeec----ceeeeeeCCCCeEEEE
Q psy10439 177 TIVKWLKKEGDAVVPGDVLCEIQTD----KAVMSFETEEEGILAK 217 (219)
Q Consensus 177 ~i~~~~v~~Gd~V~~g~~l~~ve~~----K~~~~i~a~~~G~v~~ 217 (219)
-+....++.||.|++||+|+.|... ....+|.||.+|+|..
T Consensus 266 Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~ 310 (331)
T 3na6_A 266 GLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLIS 310 (331)
T ss_dssp EEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEE
T ss_pred eEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEE
Confidence 3667789999999999999999984 4678999999999865
No 95
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=94.73 E-value=0.042 Score=42.84 Aligned_cols=49 Identities=18% Similarity=0.118 Sum_probs=41.4
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccCcee-eEecCCCeEEEEEEecC
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVM-SFETEEEGILAKILVPE 104 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~-~i~ap~~G~v~~i~v~~ 104 (219)
.+|.-+-..+.+|+.|.+||.|+-|.|.|..+ -++||.+|+|.-+.=-.
T Consensus 107 aeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p 156 (169)
T 3d4r_A 107 AEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIP 156 (169)
T ss_dssp ECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEET
T ss_pred eCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecC
Confidence 35667778899999999999999999999965 59999999998776433
No 96
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=94.22 E-value=0.057 Score=46.52 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=40.7
Q ss_pred CCeEEEEecc-CceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 74 GDVLCEIQTD-KAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 74 gd~l~~iet~-K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
-..-..|+.+ .....|.++.+|+|.++++++|+. |+.|++|+.|...+
T Consensus 44 ~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~-V~kGq~L~~ld~~~ 92 (359)
T 3lnn_A 44 FNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDE-VKAGDVLFTIDSAD 92 (359)
T ss_dssp EEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCE-ECTTCEEEEEECSS
T ss_pred EEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCE-EcCCCEEEEEChHH
Confidence 3444577765 667899999999999999999999 99999999997643
No 97
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=94.18 E-value=0.057 Score=47.49 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=37.1
Q ss_pred ceeeeEeecCCCeecCCCeEEEEee------cceeeeeeCCCCeEEEEc
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQT------DKAVMSFETEEEGILAKI 218 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~------~K~~~~i~a~~~G~v~~i 218 (219)
+-+....++.||.|++||+|+.|.. .....+|.||.+|+|-..
T Consensus 298 ~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~ 346 (368)
T 3fmc_A 298 AGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILH 346 (368)
T ss_dssp CEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEE
T ss_pred CEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEE
Confidence 3467899999999999999999998 457789999999998653
No 98
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=93.97 E-value=0.083 Score=46.04 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=36.6
Q ss_pred eeeeEeecCCCeecCCCeEEEEee----cceeeeeeCCCCeEEEEc
Q psy10439 177 TIVKWLKKEGDAVVPGDVLCEIQT----DKAVMSFETEEEGILAKI 218 (219)
Q Consensus 177 ~i~~~~v~~Gd~V~~g~~l~~ve~----~K~~~~i~a~~~G~v~~i 218 (219)
-+....++.|+.|++||+|+.++. .+...+|.||.+|+|..+
T Consensus 276 G~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~ 321 (354)
T 3cdx_A 276 GLFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG 321 (354)
T ss_dssp EEEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE
T ss_pred EEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE
Confidence 367778899999999999999998 478899999999998653
No 99
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=91.91 E-value=0.15 Score=40.65 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=32.6
Q ss_pred eeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEE
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILA 216 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~ 216 (219)
...+|+.|+.|++||+||+. |..+..|-+..+|+|.
T Consensus 62 a~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~ 97 (190)
T 2auk_A 62 AVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVR 97 (190)
T ss_dssp CEESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEE
T ss_pred CEEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEE
Confidence 35789999999999999976 7999999999999986
No 100
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=91.57 E-value=0.32 Score=37.87 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=38.4
Q ss_pred cceeeeEeecCCCeecCCCeEEEEeecceeee-eeCCCCeEEEEc
Q psy10439 175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMS-FETEEEGILAKI 218 (219)
Q Consensus 175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~-i~a~~~G~v~~i 218 (219)
+|.-.-..+.+|+.|.+||.|+-+.|-|-..- +.||.+|+|.-|
T Consensus 108 eG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v 152 (169)
T 3d4r_A 108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFM 152 (169)
T ss_dssp CSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEE
T ss_pred CceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEE
Confidence 56666788999999999999999999997665 999999999764
No 101
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=91.57 E-value=0.064 Score=42.95 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=35.1
Q ss_pred eCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEE--------------------------E--EecCCCeeeecCcEEE
Q psy10439 65 KKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAK--------------------------I--LVPENTTDVKVGTLIA 116 (219)
Q Consensus 65 v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~--------------------------i--~v~~Gd~~V~~G~~l~ 116 (219)
|+.|+.|+.||+|+ -...|-|..+|+|.- + +|++||. |..|+.|+
T Consensus 85 V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~-V~~Ge~L~ 157 (193)
T 2xha_A 85 LRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKE-VKQGEMLA 157 (193)
T ss_dssp CCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCE-ECTTCEEE
T ss_pred cCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCE-ECCCCCcc
Confidence 78999999999998 345567788887742 3 6788888 88888775
No 102
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=91.47 E-value=0.11 Score=45.29 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=36.5
Q ss_pred eEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 76 VLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 76 ~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
.-..|+.. -...|.++.+|+|.++++++|+. |+.|++|+.|...
T Consensus 34 ~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~-V~kGq~L~~ld~~ 77 (369)
T 1vf7_A 34 LPGRTNAF-RIAEVRPQVNGIILKRLFKEGSD-VKAGQQLYQIDPA 77 (369)
T ss_dssp EEEECEES-CEEEECCSSCEEEEECCSCSSEE-ECTTSEEEEECCH
T ss_pred EEEEEEee-eEEEEEeeCceEEEEEEcCCCCE-EcCCCEEEEECcH
Confidence 33455543 45789999999999999999999 9999999999754
No 103
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=90.89 E-value=1.1 Score=35.52 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.2
Q ss_pred ceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQTDK 202 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K 202 (219)
|+--+++|++||+|++||+|+.+.-++
T Consensus 115 G~gF~~~V~~Gd~Vk~Gd~L~~fD~~~ 141 (183)
T 3our_B 115 GEGFTRIAEEGQTVKAGDTVIEFDLAL 141 (183)
T ss_dssp TTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred CccceEEEeCcCEEcCCCEEEEECHHH
Confidence 666789999999999999999996443
No 104
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=89.89 E-value=0.085 Score=45.52 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=39.9
Q ss_pred CCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 68 GDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 68 Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
|+.-..=..-..|+.. ....|.++.+|+|.++++++|+. |+.|++|+.|...
T Consensus 15 ~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~-V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 15 GNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQ-VKKGDLLAEIDST 66 (369)
T ss_dssp ECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSC-CCSSCCCEECCCH
T ss_pred cceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCE-ECCCCEEEEEcCH
Confidence 3333333344566643 46689999999999999999999 9999999999754
No 105
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=89.43 E-value=0.51 Score=40.50 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=34.8
Q ss_pred ceeeeEeecCCCeecCCCeEEEEee----cceeeeeeCCCCeEEEE
Q psy10439 176 GTIVKWLKKEGDAVVPGDVLCEIQT----DKAVMSFETEEEGILAK 217 (219)
Q Consensus 176 ~~i~~~~v~~Gd~V~~g~~l~~ve~----~K~~~~i~a~~~G~v~~ 217 (219)
+.+....++.|+.|++||+|+.+-. .....+|.||.+|+|.-
T Consensus 265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~ 310 (332)
T 2qj8_A 265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFA 310 (332)
T ss_dssp SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEE
T ss_pred CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEE
Confidence 3455677889999999999999965 45778899999999864
No 106
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=85.10 E-value=3.4 Score=41.95 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=36.4
Q ss_pred EEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCe
Q psy10439 62 KWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 107 (219)
Q Consensus 62 ~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~ 107 (219)
.++|+.||.|++||.||+. |--+..|-+..+|+|.=..+.+|-.
T Consensus 1002 ~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~f~d~~~g~t 1045 (1407)
T 3lu0_D 1002 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT 1045 (1407)
T ss_dssp EESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEEEESCCBTTT
T ss_pred EEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEEEeeeccCce
Confidence 5789999999999999987 5678899999999997655555554
No 107
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=83.60 E-value=0.72 Score=35.50 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=22.9
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccC
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDK 84 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K 84 (219)
+|+=-+.+|++||+|++||+|+++.-++
T Consensus 87 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~ 114 (154)
T 2gpr_A 87 DGNGFESFVTQDQEVNAGDKLVTVDLKS 114 (154)
T ss_dssp TTCSEEECCCTTCEECTTCEEEEECHHH
T ss_pred CCCceEEEEcCCCEEcCCCEEEEECHHH
Confidence 4444568999999999999999998654
No 108
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=81.00 E-value=0.87 Score=36.05 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=23.8
Q ss_pred eEEEEEEEeCCCCeEcCCCeEEEEeccC
Q psy10439 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDK 84 (219)
Q Consensus 57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K 84 (219)
+|+--+++|++||+|++||+|+++.-++
T Consensus 114 ~G~gF~~~V~~Gd~Vk~Gd~L~~fD~~~ 141 (183)
T 3our_B 114 KGEGFTRIAEEGQTVKAGDTVIEFDLAL 141 (183)
T ss_dssp TTTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred CCccceEEEeCcCEEcCCCEEEEECHHH
Confidence 4566689999999999999999997654
No 109
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=79.04 E-value=1.6 Score=38.07 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=28.6
Q ss_pred eeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEE
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILA 216 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~ 216 (219)
+..+|+.|+.|++||.||+-. .|-|..+|+|.
T Consensus 61 a~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~ 92 (352)
T 2xhc_A 61 AKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV 92 (352)
T ss_dssp CEESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred CEEEecCCCEEcCCCEEEEec------cEEEecceEEE
Confidence 468899999999999999986 89999999984
No 110
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=75.58 E-value=1.6 Score=33.80 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=21.7
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEeccC
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQTDK 84 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet~K 84 (219)
|+=-+.+|++||+|++||+|+++.-++
T Consensus 93 G~gF~~~V~~Gd~V~~G~~L~~~d~~~ 119 (161)
T 1f3z_A 93 GEGFKRIAEEGQRVKVGDTVIEFDLPL 119 (161)
T ss_dssp TTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred CCccEEEEeCcCEECCCCEEEEECHHH
Confidence 333455999999999999999997643
No 111
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=75.17 E-value=2.4 Score=36.63 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=39.8
Q ss_pred EeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439 64 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG 122 (219)
Q Consensus 64 ~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~ 122 (219)
.++.|+.|++||+|+.+-. .+|.+|.+|.+.-. . .-. |..|+.++.+....
T Consensus 280 ~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~~--p-~p~-V~~G~~~~~i~~~~ 330 (350)
T 2bco_A 280 NVENFTSFVHGEVFGHDGD----KPLMAKNDNEAIVF--P-NRH-VAIGQRAALMVCEV 330 (350)
T ss_dssp TCCBTEECCTTCEEEEETT----EEEECSSSSCEEES--C-CTT-CCTTSEEEEEEEEC
T ss_pred cccCCCEeCCCCEEEEECC----EEEEeCCCCEEEEe--c-CCC-CCCCcEEEEEEEEc
Confidence 3689999999999999853 78899999986543 2 455 89999888775443
No 112
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=68.76 E-value=2.9 Score=32.37 Aligned_cols=29 Identities=34% Similarity=0.500 Sum_probs=23.9
Q ss_pred ceEEEEEEEeCCCCeEcCCCeEEEEeccC
Q psy10439 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK 84 (219)
Q Consensus 56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K 84 (219)
.+|+=-+.+|++||+|++||+|+++.-++
T Consensus 91 l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~ 119 (162)
T 1ax3_A 91 LKGEGFTSFVSEGDRVEPGQKLLEVDLDA 119 (162)
T ss_dssp TTTTTEEESCCCCSEECSEEEEEEECHHH
T ss_pred cCCCccEEEEeCCCEEcCCCEEEEECHHH
Confidence 35566677999999999999999997654
No 113
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=67.22 E-value=4.5 Score=34.06 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.1
Q ss_pred EEEEEeCCCCeEcCCCeEEEEec
Q psy10439 60 IVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 60 i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
-++|+++.|+.|++|++|++++-
T Consensus 72 ~v~~~~~dG~~v~~g~~v~~i~G 94 (284)
T 1qpo_A 72 RVLDRVEDGARVPPGEALMTLEA 94 (284)
T ss_dssp EEEEECCTTCEECTTCEEEEEEE
T ss_pred EEEEEcCCCCEecCCcEEEEEEE
Confidence 35899999999999999999986
No 114
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=65.62 E-value=3.9 Score=36.60 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=22.9
Q ss_pred CceEEEEEEEeCCCCeEcCCCeEEEEeccC
Q psy10439 55 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDK 84 (219)
Q Consensus 55 ~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K 84 (219)
++.+-=+.++++.||.|++||+|+.|-++.
T Consensus 372 ~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 372 IDLAVGIVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp CCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred CCcCcCeeEeccCCCEECCCCeEEEEEcCC
Confidence 333444678999999999999999887654
No 115
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=65.56 E-value=3.8 Score=36.53 Aligned_cols=30 Identities=33% Similarity=0.482 Sum_probs=22.9
Q ss_pred CceEEEEEEEeCCCCeEcCCCeEEEEeccC
Q psy10439 55 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDK 84 (219)
Q Consensus 55 ~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K 84 (219)
++.+-=+.++++.||.|++||+|+.|-++.
T Consensus 364 id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 364 IDHGVGVYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp CCTTCEEEESCCTTCEECTTSEEEEEEECS
T ss_pred CCcCcCeeeeccCCCEeCCCCeEEEEEeCC
Confidence 333444678999999999999999987654
No 116
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=63.31 E-value=4.8 Score=36.42 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=21.6
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEeccC
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQTDK 84 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet~K 84 (219)
+-=+.++++.||.|++||+|+.|-++.
T Consensus 410 ~~Gi~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 410 GVGAELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp SCEEEECSCTTCEECTTCEEEEEEESS
T ss_pred CCceEEEccCCCEECCCCeEEEEEcCC
Confidence 334678999999999999999887654
No 117
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=63.31 E-value=6 Score=32.98 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=20.5
Q ss_pred EEEEeCCCCeEcCCCeEEEEec
Q psy10439 61 VKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 61 ~~w~v~~Gd~V~~gd~l~~iet 82 (219)
++|++++|+.|..|++|++|+.
T Consensus 60 v~~~~~eG~~v~~g~~~~~v~G 81 (273)
T 2b7n_A 60 CVQTIKDKERFKPKDALMEIRG 81 (273)
T ss_dssp EEEECCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEEe
Confidence 3799999999999999999987
No 118
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=63.22 E-value=4.3 Score=34.19 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.7
Q ss_pred EEEEeCCCCeEcCCCeEEEEec
Q psy10439 61 VKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 61 ~~w~v~~Gd~V~~gd~l~~iet 82 (219)
++|+++.|+.|+.||+|++++-
T Consensus 74 v~~~~~dG~~v~~g~~v~~i~G 95 (286)
T 1x1o_A 74 FTPLVAEGARVAEGTEVARVRG 95 (286)
T ss_dssp EEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCCccCCCEEEEEEE
Confidence 4899999999999999999986
No 119
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=63.15 E-value=4.4 Score=34.25 Aligned_cols=22 Identities=18% Similarity=0.516 Sum_probs=20.6
Q ss_pred EEEEeCCCCeEcCCCeEEEEec
Q psy10439 61 VKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 61 ~~w~v~~Gd~V~~gd~l~~iet 82 (219)
++|++++|+.|++||+|++++-
T Consensus 77 v~~~~~dG~~v~~g~~v~~i~G 98 (287)
T 3tqv_A 77 ITWLYSDAQKVPANARIFELKG 98 (287)
T ss_dssp EEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEEE
Confidence 4899999999999999999986
No 120
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=63.02 E-value=6.6 Score=35.11 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=25.5
Q ss_pred cccceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439 173 MTEGTIVKWLKKEGDAVVPGDVLCEIQTDK 202 (219)
Q Consensus 173 ~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K 202 (219)
++.+.-+.++++.||.|++||+|+.|-++.
T Consensus 372 ~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 372 IDLAVGIVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp CCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred CCcCcCeeEeccCCCEECCCCeEEEEEcCC
Confidence 345666789999999999999999998765
No 121
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=62.81 E-value=6.6 Score=35.00 Aligned_cols=29 Identities=34% Similarity=0.448 Sum_probs=24.7
Q ss_pred ccceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439 174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDK 202 (219)
Q Consensus 174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K 202 (219)
+.+.-+.++++.||.|++||+|+.|-++.
T Consensus 365 d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 365 DHGVGVYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp CTTCEEEESCCTTCEECTTSEEEEEEECS
T ss_pred CcCcCeeeeccCCCEeCCCCeEEEEEeCC
Confidence 34555789999999999999999998765
No 122
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=62.70 E-value=4.9 Score=34.17 Aligned_cols=22 Identities=23% Similarity=0.287 Sum_probs=20.7
Q ss_pred EEEEeCCCCeEcCCCeEEEEec
Q psy10439 61 VKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 61 ~~w~v~~Gd~V~~gd~l~~iet 82 (219)
++|++++|+.|+.|++|++++-
T Consensus 86 v~~~~~dG~~v~~g~~v~~i~G 107 (300)
T 3l0g_A 86 YEIHKKDGDITGKNSTLVSGEA 107 (300)
T ss_dssp EEECCCTTCEECSSCEEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEEE
Confidence 4899999999999999999986
No 123
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=62.40 E-value=4.1 Score=36.51 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=21.7
Q ss_pred CceEEEEEEEeCCCCeEcCCCeEEEEec
Q psy10439 55 MTEGTIVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 55 ~~~g~i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
++.+-=+.++++.||.|++||+|++|-.
T Consensus 375 id~~~Gi~l~~~~G~~V~~g~~l~~i~~ 402 (436)
T 3h5q_A 375 IDLAVGIVLNKKIGDKVEEGESLLTIHS 402 (436)
T ss_dssp CCTTCEEEESCCTTCEECTTSEEEEEEE
T ss_pred CCCCCceEEecCCcCEeCCCCeEEEEeC
Confidence 3445556889999999999999998873
No 124
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=60.90 E-value=3.5 Score=32.33 Aligned_cols=19 Identities=16% Similarity=0.101 Sum_probs=10.7
Q ss_pred EEeCCCCeEcCCCeEEEEe
Q psy10439 63 WLKKEGDAVAPGDVLCEIQ 81 (219)
Q Consensus 63 w~v~~Gd~V~~gd~l~~ie 81 (219)
+.|++||.|++||.|..+-
T Consensus 85 i~V~~G~~V~~Gq~IG~vG 103 (182)
T 3it5_A 85 IQVSNGQQVSADTKLGVYA 103 (182)
T ss_dssp CCCCTTCEECTTCEEEEEC
T ss_pred cccCCCCEEcCCCEEEeec
Confidence 3455566666666655554
No 125
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=60.46 E-value=4.2 Score=34.27 Aligned_cols=22 Identities=23% Similarity=0.361 Sum_probs=20.6
Q ss_pred EEEEeCCCCeEcCCCeEEEEec
Q psy10439 61 VKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 61 ~~w~v~~Gd~V~~gd~l~~iet 82 (219)
++|+++.|+.|+.||+|++++-
T Consensus 73 v~~~~~dG~~v~~g~~v~~i~G 94 (285)
T 1o4u_A 73 SKFNVEDGEYLEGTGVIGEIEG 94 (285)
T ss_dssp EEESCCTTCEEESCEEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEEE
Confidence 5899999999999999999986
No 126
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=60.31 E-value=5.3 Score=33.95 Aligned_cols=22 Identities=32% Similarity=0.866 Sum_probs=20.6
Q ss_pred EEEEeCCCCeEcCCCeEEEEec
Q psy10439 61 VKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 61 ~~w~v~~Gd~V~~gd~l~~iet 82 (219)
++|++++|+.|..|++|++++.
T Consensus 88 v~~~~~dG~~v~~g~~l~~v~G 109 (298)
T 3gnn_A 88 VDWRHREGDRMSADSTVCELRG 109 (298)
T ss_dssp EEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEEe
Confidence 4899999999999999999987
No 127
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=59.89 E-value=7.3 Score=35.25 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=25.0
Q ss_pred ccceeeeEeecCCCeecCCCeEEEEeecce
Q psy10439 174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKA 203 (219)
Q Consensus 174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~ 203 (219)
+.+.-+.++++.||.|++||+|+.|-++..
T Consensus 408 d~~~Gi~l~~k~G~~V~~g~~l~~i~~~~~ 437 (474)
T 1uou_A 408 RLGVGAELLVDVGQRLRRGTPWLRVHRDGP 437 (474)
T ss_dssp CSSCEEEECSCTTCEECTTCEEEEEEESSS
T ss_pred CCCCceEEEccCCCEECCCCeEEEEEcCCh
Confidence 335567899999999999999999987653
No 128
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=58.56 E-value=5.8 Score=34.02 Aligned_cols=23 Identities=26% Similarity=0.835 Sum_probs=21.1
Q ss_pred EEEEEeCCCCeEcCCCeEEEEec
Q psy10439 60 IVKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 60 i~~w~v~~Gd~V~~gd~l~~iet 82 (219)
-++|++++|+.|..|++|++|+.
T Consensus 109 ~v~~~~~dG~~v~~g~~l~~v~G 131 (320)
T 3paj_A 109 SIEWHVQDGDTLTPNQTLCTLTG 131 (320)
T ss_dssp EEEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEEeCCCCEecCCCEEEEEEe
Confidence 35899999999999999999987
No 129
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=58.08 E-value=6.1 Score=33.42 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=20.8
Q ss_pred EEEEeCCCCeEcCCCeEEEEec
Q psy10439 61 VKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 61 ~~w~v~~Gd~V~~gd~l~~iet 82 (219)
++|++++|+.|..|++|++|+.
T Consensus 87 v~~~~~dG~~v~~g~~~~~v~G 108 (296)
T 1qap_A 87 LTWHVDDGDAIHANQTVFELQG 108 (296)
T ss_dssp EEESCCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 5899999999999999999987
No 130
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=55.78 E-value=6.7 Score=35.12 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=25.7
Q ss_pred cccceeeeEeecCCCeecCCCeEEEEeecce
Q psy10439 173 MTEGTIVKWLKKEGDAVVPGDVLCEIQTDKA 203 (219)
Q Consensus 173 ~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~ 203 (219)
++.+.-+.++++.||.|++||+|+.|-++..
T Consensus 377 id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 407 (440)
T 2tpt_A 377 IDYSVGFTDMARLGDQVDGQRPLAVIHAKDE 407 (440)
T ss_dssp CCSSCEEESCCCTTCEEBTTBCSEEEEESSH
T ss_pred CCcCcCeeEeccCCCEECCCCeEEEEecCCH
Confidence 3445567899999999999999999987653
No 131
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=55.61 E-value=4 Score=36.61 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=23.1
Q ss_pred CceEEEEEEEeCCCCeEcCCCeEEEEeccC
Q psy10439 55 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDK 84 (219)
Q Consensus 55 ~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K 84 (219)
++.+-=+.++++.||.|++||+|+.|-++.
T Consensus 377 id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 377 IDYSVGFTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp CCSSCEEESCCCTTCEEBTTBCSEEEEESS
T ss_pred CCcCcCeeEeccCCCEECCCCeEEEEecCC
Confidence 344444678999999999999999987654
No 132
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=54.72 E-value=9.6 Score=34.07 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=24.9
Q ss_pred cccceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439 173 MTEGTIVKWLKKEGDAVVPGDVLCEIQTDK 202 (219)
Q Consensus 173 ~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K 202 (219)
++.+.-+.++++.||.|++||+|+.|-.++
T Consensus 375 id~~~Gi~l~~~~G~~V~~g~~l~~i~~~~ 404 (436)
T 3h5q_A 375 IDLAVGIVLNKKIGDKVEEGESLLTIHSNR 404 (436)
T ss_dssp CCTTCEEEESCCTTCEECTTSEEEEEEESS
T ss_pred CCCCCceEEecCCcCEeCCCCeEEEEeCCh
Confidence 345666789999999999999999998443
No 133
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=54.48 E-value=5.6 Score=32.76 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=19.8
Q ss_pred EEEEEEEeCCCCeEcCCCeEEEEecc
Q psy10439 58 GTIVKWLKKEGDAVAPGDVLCEIQTD 83 (219)
Q Consensus 58 g~i~~w~v~~Gd~V~~gd~l~~iet~ 83 (219)
+-+.++.|+.||.|++||+|..+-..
T Consensus 130 ~HL~~i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 130 QSLSEVSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp EEESEESCCTTCEECTTCEEEECBCC
T ss_pred ecCCccccCCCCEECCCCEEEEeCCc
Confidence 34446778899999999999887653
No 134
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=54.43 E-value=9.6 Score=32.02 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.2
Q ss_pred eeeEeecCCCeecCCCeEEEEeec
Q psy10439 178 IVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 178 i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
-..|++++|+.|+.||+|+.++..
T Consensus 72 ~v~~~~~dG~~v~~g~~v~~i~G~ 95 (284)
T 1qpo_A 72 RVLDRVEDGARVPPGEALMTLEAQ 95 (284)
T ss_dssp EEEEECCTTCEECTTCEEEEEEEE
T ss_pred EEEEEcCCCCEecCCcEEEEEEEe
Confidence 357999999999999999999754
No 135
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=53.36 E-value=6.3 Score=33.10 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=8.2
Q ss_pred EeCCCCeEcCCCeEEEE
Q psy10439 64 LKKEGDAVAPGDVLCEI 80 (219)
Q Consensus 64 ~v~~Gd~V~~gd~l~~i 80 (219)
.|++||.|++||.|..+
T Consensus 233 ~V~~G~~V~~Gq~IG~v 249 (282)
T 2hsi_A 233 DVKLGQQVPRGGVLGKV 249 (282)
T ss_dssp CSCTTCEECTTCEEEEC
T ss_pred ccCCcCEECCCCEEEEE
Confidence 34444555555544443
No 136
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=52.80 E-value=7.2 Score=30.51 Aligned_cols=22 Identities=14% Similarity=0.018 Sum_probs=18.8
Q ss_pred eeEeecCCCeecCCCeEEEEee
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQT 200 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve~ 200 (219)
.++.|++||+|++||+|..+-.
T Consensus 83 ~~i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 83 DQIQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp ESCCCCTTCEECTTCEEEEECS
T ss_pred CccccCCCCEEcCCCEEEeecC
Confidence 4567999999999999999853
No 137
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=52.61 E-value=6.8 Score=33.16 Aligned_cols=21 Identities=29% Similarity=0.291 Sum_probs=13.5
Q ss_pred EEecCCCeeeecCcEEEEEeec
Q psy10439 100 ILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 100 i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
+.|+.|+. |..|++|+.+...
T Consensus 239 i~Vk~Gq~-V~~GqvIG~vG~T 259 (291)
T 1qwy_A 239 LTVSAGDK-VKAGDQIAYSGST 259 (291)
T ss_dssp ECCCTTCE-ECTTCEEEECCCC
T ss_pred cccCCcCE-ECCCCEEEEECCC
Confidence 45667776 7777777766543
No 138
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=52.06 E-value=9.3 Score=32.14 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.8
Q ss_pred eeEeecCCCeecCCCeEEEEeec
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
..|++++|+.|+.||+|++++..
T Consensus 74 v~~~~~dG~~v~~g~~v~~i~G~ 96 (286)
T 1x1o_A 74 FTPLVAEGARVAEGTEVARVRGP 96 (286)
T ss_dssp EEESSCTTCEECTTCEEEEEEEE
T ss_pred EEEEcCCCCCccCCCEEEEEEEc
Confidence 57999999999999999999754
No 139
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=51.88 E-value=7.1 Score=33.02 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=20.4
Q ss_pred EEEEeCCCCeEcCCCeEEEEec
Q psy10439 61 VKWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 61 ~~w~v~~Gd~V~~gd~l~~iet 82 (219)
++|++++|+.|..|++|++|+.
T Consensus 73 v~~~~~dG~~v~~g~~l~~v~G 94 (299)
T 2jbm_A 73 VSWFLPEGSKLVPVARVAEVRG 94 (299)
T ss_dssp EEESSCTTCEECSSEEEEEEEE
T ss_pred EEEEcCCCCCCCCCCEEEEEEE
Confidence 3799999999999999999987
No 140
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=51.86 E-value=10 Score=32.25 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=21.3
Q ss_pred eeeEeecCCCeecCCCeEEEEeec
Q psy10439 178 IVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 178 i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
-..|++++|+.|+.||+|+.++..
T Consensus 85 ~v~~~~~dG~~v~~g~~v~~i~G~ 108 (300)
T 3l0g_A 85 KYEIHKKDGDITGKNSTLVSGEAL 108 (300)
T ss_dssp EEEECCCTTCEECSSCEEEEEEEE
T ss_pred EEEEEeCCCCEeeCCCEEEEEEEC
Confidence 358999999999999999999754
No 141
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=51.78 E-value=9.5 Score=32.18 Aligned_cols=23 Identities=17% Similarity=0.495 Sum_probs=20.8
Q ss_pred eeEeecCCCeecCCCeEEEEeec
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
..|++++|+.|+.||+|+.++..
T Consensus 77 v~~~~~dG~~v~~g~~v~~i~G~ 99 (287)
T 3tqv_A 77 ITWLYSDAQKVPANARIFELKGN 99 (287)
T ss_dssp EEESSCTTCEECTTCEEEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEEEc
Confidence 48999999999999999999754
No 142
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=50.32 E-value=8.8 Score=32.30 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.7
Q ss_pred eeEeecCCCeecCCCeEEEEeec
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
..|++++|+.|+.||+|+.++..
T Consensus 73 v~~~~~dG~~v~~g~~v~~i~G~ 95 (285)
T 1o4u_A 73 SKFNVEDGEYLEGTGVIGEIEGN 95 (285)
T ss_dssp EEESCCTTCEEESCEEEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEEEc
Confidence 57999999999999999999754
No 143
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=49.64 E-value=13 Score=30.93 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.7
Q ss_pred eeEeecCCCeecCCCeEEEEeec
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
..|.+++|+.|..|++|+.++..
T Consensus 60 v~~~~~eG~~v~~g~~~~~v~G~ 82 (273)
T 2b7n_A 60 CVQTIKDKERFKPKDALMEIRGD 82 (273)
T ss_dssp EEEECCTTCEECTTCEEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEEec
Confidence 46999999999999999999864
No 144
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=49.07 E-value=11 Score=31.95 Aligned_cols=23 Identities=30% Similarity=0.788 Sum_probs=20.9
Q ss_pred eeEeecCCCeecCCCeEEEEeec
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
.+|++++|+.|+.||+|+.++..
T Consensus 88 v~~~~~dG~~v~~g~~l~~v~G~ 110 (298)
T 3gnn_A 88 VDWRHREGDRMSADSTVCELRGP 110 (298)
T ss_dssp EEESSCTTCEECTTCEEEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEEec
Confidence 57999999999999999999864
No 145
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=47.52 E-value=12 Score=32.06 Aligned_cols=24 Identities=25% Similarity=0.782 Sum_probs=21.4
Q ss_pred eeeEeecCCCeecCCCeEEEEeec
Q psy10439 178 IVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 178 i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
-.+|++++|+.|..||+|+.++..
T Consensus 109 ~v~~~~~dG~~v~~g~~l~~v~G~ 132 (320)
T 3paj_A 109 SIEWHVQDGDTLTPNQTLCTLTGP 132 (320)
T ss_dssp EEEESSCTTCEECTTCEEEEEEEE
T ss_pred EEEEEeCCCCEecCCCEEEEEEec
Confidence 357999999999999999999854
No 146
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=46.65 E-value=13 Score=31.40 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=21.4
Q ss_pred eeeEeecCCCeecCCCeEEEEeec
Q psy10439 178 IVKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 178 i~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
-.+|++++|+.|..|++|+.++..
T Consensus 86 ~v~~~~~dG~~v~~g~~~~~v~G~ 109 (296)
T 1qap_A 86 RLTWHVDDGDAIHANQTVFELQGP 109 (296)
T ss_dssp EEEESCCTTCEECTTCEEEEEEEE
T ss_pred EEEEEcCCCCEecCCCEEEEEEEc
Confidence 457999999999999999999864
No 147
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=46.60 E-value=8.8 Score=31.63 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=9.3
Q ss_pred EeCCCCeEcCCCeEEEEe
Q psy10439 64 LKKEGDAVAPGDVLCEIQ 81 (219)
Q Consensus 64 ~v~~Gd~V~~gd~l~~ie 81 (219)
.|++||.|++||.|..+-
T Consensus 183 ~V~~G~~V~~Gq~IG~vG 200 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYMG 200 (252)
T ss_dssp SCCTTCEECTTCEEEECB
T ss_pred cCCCCCEECCCCEEEEEC
Confidence 455555555555555543
No 148
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=43.63 E-value=11 Score=32.54 Aligned_cols=32 Identities=9% Similarity=-0.009 Sum_probs=26.8
Q ss_pred EeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEE
Q psy10439 181 WLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILA 216 (219)
Q Consensus 181 ~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~ 216 (219)
..++.|+.|++||+|+.+-. .++.+|.+|.+.
T Consensus 279 ~~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i 310 (350)
T 2bco_A 279 DNVENFTSFVHGEVFGHDGD----KPLMAKNDNEAI 310 (350)
T ss_dssp TTCCBTEECCTTCEEEEETT----EEEECSSSSCEE
T ss_pred ccccCCCEeCCCCEEEEECC----EEEEeCCCCEEE
Confidence 44689999999999999843 788999999854
No 149
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=43.43 E-value=16 Score=37.19 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=31.8
Q ss_pred eeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEE
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILA 216 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~ 216 (219)
...+|+.|+.|++||+|++. |--+..|-|..+|+|.
T Consensus 1001 s~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~ 1036 (1407)
T 3lu0_D 1001 AVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVR 1036 (1407)
T ss_dssp CEESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEE
T ss_pred CEEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEE
Confidence 34789999999999999987 6778899999999986
No 150
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=43.12 E-value=11 Score=32.45 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=9.9
Q ss_pred EEeCCCCeEcCCCeEEEEe
Q psy10439 63 WLKKEGDAVAPGDVLCEIQ 81 (219)
Q Consensus 63 w~v~~Gd~V~~gd~l~~ie 81 (219)
+.|++||.|++||+|+.+-
T Consensus 284 ~~v~~G~~V~~G~~Ig~~G 302 (361)
T 2gu1_A 284 ILVKKGQLVKRGQKIALAG 302 (361)
T ss_dssp ECCCTTCEECTTCEEEECC
T ss_pred cccCCcCEECCCCEEEEEC
Confidence 3455555555555555443
No 151
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=40.59 E-value=15 Score=31.04 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=20.7
Q ss_pred eeEeecCCCeecCCCeEEEEeec
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQTD 201 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve~~ 201 (219)
..|.+++|+.|..||+|+.++..
T Consensus 73 v~~~~~dG~~v~~g~~l~~v~G~ 95 (299)
T 2jbm_A 73 VSWFLPEGSKLVPVARVAEVRGP 95 (299)
T ss_dssp EEESSCTTCEECSSEEEEEEEEE
T ss_pred EEEEcCCCCCCCCCCEEEEEEEc
Confidence 46999999999999999999864
No 152
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=39.84 E-value=51 Score=30.61 Aligned_cols=53 Identities=23% Similarity=0.369 Sum_probs=39.8
Q ss_pred eCCCCeEcCCCeEEEEeccC-ceeeE--ecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439 65 KKEGDAVAPGDVLCEIQTDK-AVMSF--ETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121 (219)
Q Consensus 65 v~~Gd~V~~gd~l~~iet~K-~~~~i--~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~ 121 (219)
+++||.|..||.+..+.-.. ..+.| +....|+|..+ ..|+ ..+.+.++.+++.
T Consensus 131 ~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i--~~g~--~~v~~~v~~i~~~ 186 (600)
T 3vr4_A 131 IEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI--ESGS--FTIDDPICVIETE 186 (600)
T ss_dssp SCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE--CCEE--ECTTSCCEEEEET
T ss_pred cccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe--cCCc--ceeceeEEEEecc
Confidence 79999999999999986444 33554 33468999997 6676 4777888888643
No 153
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=39.01 E-value=15 Score=30.24 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=19.4
Q ss_pred eeeEeecCCCeecCCCeEEEEee
Q psy10439 178 IVKWLKKEGDAVVPGDVLCEIQT 200 (219)
Q Consensus 178 i~~~~v~~Gd~V~~g~~l~~ve~ 200 (219)
+..+.|++||.|++||+|..+-.
T Consensus 132 L~~i~Vk~Gd~V~~Gq~IG~vG~ 154 (245)
T 3tuf_B 132 LSEVSVEQGDKVKQNQVIGKSGK 154 (245)
T ss_dssp ESEESCCTTCEECTTCEEEECBC
T ss_pred CCccccCCCCEECCCCEEEEeCC
Confidence 44678999999999999998743
No 154
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=38.55 E-value=8.4 Score=32.99 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=16.9
Q ss_pred EEEeCCCCeEcCCCeEEEEec
Q psy10439 62 KWLKKEGDAVAPGDVLCEIQT 82 (219)
Q Consensus 62 ~w~v~~Gd~V~~gd~l~~iet 82 (219)
++.|++||.|++||+|+.+-+
T Consensus 250 ~~~V~~G~~V~~Gq~Ig~~G~ 270 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHTGI 270 (334)
T ss_dssp SCCCCTTCEECTTSEEEECBC
T ss_pred cccCCCcCEECCCCEEEeecC
Confidence 346899999999999997753
No 155
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=38.46 E-value=15 Score=31.03 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.3
Q ss_pred eeEeecCCCeecCCCeEEEEe
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQ 199 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve 199 (219)
.++.|++||.|++||+|..+-
T Consensus 237 s~i~Vk~Gq~V~~GqvIG~vG 257 (291)
T 1qwy_A 237 NRLTVSAGDKVKAGDQIAYSG 257 (291)
T ss_dssp SEECCCTTCEECTTCEEEECC
T ss_pred CccccCCcCEECCCCEEEEEC
Confidence 457899999999999999873
No 156
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=37.66 E-value=15 Score=30.72 Aligned_cols=20 Identities=35% Similarity=0.327 Sum_probs=17.6
Q ss_pred eEeecCCCeecCCCeEEEEe
Q psy10439 180 KWLKKEGDAVVPGDVLCEIQ 199 (219)
Q Consensus 180 ~~~v~~Gd~V~~g~~l~~ve 199 (219)
++.|++||.|++||+|..+-
T Consensus 231 ~i~V~~G~~V~~Gq~IG~vG 250 (282)
T 2hsi_A 231 KIDVKLGQQVPRGGVLGKVG 250 (282)
T ss_dssp EECSCTTCEECTTCEEEECC
T ss_pred ccccCCcCEECCCCEEEEEC
Confidence 56899999999999999873
No 157
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=37.03 E-value=14 Score=31.17 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.5
Q ss_pred EEEEeCCCCeEcCC------CeEEEEec
Q psy10439 61 VKWLKKEGDAVAPG------DVLCEIQT 82 (219)
Q Consensus 61 ~~w~v~~Gd~V~~g------d~l~~iet 82 (219)
++|++++|+.|..| ++|++|+.
T Consensus 69 v~~~~~eG~~v~~g~~~~~~~~l~~v~G 96 (294)
T 3c2e_A 69 VEWLFKEGSFLEPSKNDSGKIVVAKITG 96 (294)
T ss_dssp EEESSCTTCEECGGGSSSSCEEEEEEEE
T ss_pred EEEEeCCCCEeCCCCCCCCCcEEEEEEE
Confidence 37999999999999 99999987
No 158
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=34.97 E-value=8.1 Score=33.15 Aligned_cols=34 Identities=6% Similarity=-0.046 Sum_probs=23.6
Q ss_pred EeCCCCeEcCCCeEEEEeccC-----ceeeEecCCCeEE
Q psy10439 64 LKKEGDAVAPGDVLCEIQTDK-----AVMSFETEEEGIL 97 (219)
Q Consensus 64 ~v~~Gd~V~~gd~l~~iet~K-----~~~~i~ap~~G~v 97 (219)
.++.|+.|++||+|+.+-... ....|.+|.+|++
T Consensus 278 ~~~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv 316 (341)
T 1yw4_A 278 SVENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVK 316 (341)
T ss_dssp TCCBTEECCSSCCCC--------CCSSCCEEESCCTTCC
T ss_pred cCCCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCce
Confidence 358899999999999886532 3456999999977
No 159
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=34.20 E-value=14 Score=31.62 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=16.8
Q ss_pred eEeecCCCeecCCCeEEEE
Q psy10439 180 KWLKKEGDAVVPGDVLCEI 198 (219)
Q Consensus 180 ~~~v~~Gd~V~~g~~l~~v 198 (219)
.+.|++||.|++||+|..+
T Consensus 250 ~~~V~~G~~V~~Gq~Ig~~ 268 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHT 268 (334)
T ss_dssp SCCCCTTCEECTTSEEEEC
T ss_pred cccCCCcCEECCCCEEEee
Confidence 4568999999999999876
No 160
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=33.69 E-value=3.8 Score=28.15 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=13.8
Q ss_pred EEEeCCCCeEcCCCeEE
Q psy10439 62 KWLKKEGDAVAPGDVLC 78 (219)
Q Consensus 62 ~w~v~~Gd~V~~gd~l~ 78 (219)
+++|++||.|+.||.|.
T Consensus 66 ~l~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 66 QLNVFEGERVERGDVIS 82 (84)
T ss_dssp CCSSCTTEEECBSCSSB
T ss_pred ceEeCCCCEECCCCCcc
Confidence 34689999999999764
No 161
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=32.00 E-value=21 Score=29.32 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=18.2
Q ss_pred eeE-eecCCCeecCCCeEEEEee
Q psy10439 179 VKW-LKKEGDAVVPGDVLCEIQT 200 (219)
Q Consensus 179 ~~~-~v~~Gd~V~~g~~l~~ve~ 200 (219)
..+ .|++||.|++||+|..+-.
T Consensus 179 ~~~~~V~~G~~V~~Gq~IG~vG~ 201 (252)
T 3nyy_A 179 DSYAELEKGDPVKAGDLLGYMGD 201 (252)
T ss_dssp SEECSCCTTCEECTTCEEEECBC
T ss_pred CCCCcCCCCCEECCCCEEEEECC
Confidence 344 7899999999999998743
No 162
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=30.70 E-value=11 Score=32.29 Aligned_cols=35 Identities=6% Similarity=-0.062 Sum_probs=24.2
Q ss_pred eecCCCeecCCCeEEEEeecc-----eeeeeeCCCCeEEE
Q psy10439 182 LKKEGDAVVPGDVLCEIQTDK-----AVMSFETEEEGILA 216 (219)
Q Consensus 182 ~v~~Gd~V~~g~~l~~ve~~K-----~~~~i~a~~~G~v~ 216 (219)
.++.|+.|++||+|+.+-... ...+|.+|.+|+|.
T Consensus 278 ~~~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~ 317 (341)
T 1yw4_A 278 SVENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKP 317 (341)
T ss_dssp TCCBTEECCSSCCCC--------CCSSCCEEESCCTTCCS
T ss_pred cCCCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCcee
Confidence 458999999999999985532 34569999999874
No 163
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=29.66 E-value=25 Score=30.28 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=18.0
Q ss_pred eeEeecCCCeecCCCeEEEEe
Q psy10439 179 VKWLKKEGDAVVPGDVLCEIQ 199 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g~~l~~ve 199 (219)
.++.|++||.|++||+|..+=
T Consensus 282 ~~~~v~~G~~V~~G~~Ig~~G 302 (361)
T 2gu1_A 282 DKILVKKGQLVKRGQKIALAG 302 (361)
T ss_dssp SEECCCTTCEECTTCEEEECC
T ss_pred CccccCCcCEECCCCEEEEEC
Confidence 347799999999999999873
No 164
>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Probab=29.32 E-value=1.1e+02 Score=24.86 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=15.2
Q ss_pred Cce-eeEecCCCeEEEEEEe
Q psy10439 84 KAV-MSFETEEEGILAKILV 102 (219)
Q Consensus 84 K~~-~~i~ap~~G~v~~i~v 102 (219)
|.. .-+.|+.+|+|.+|.-
T Consensus 165 KSNN~v~~as~~G~I~~I~~ 184 (251)
T 1e2w_A 165 KSNFTIYNASAAGKIVAITA 184 (251)
T ss_dssp BCSSSCCBCSSCEEEEEEEE
T ss_pred cccCceecccCCeEEEEEee
Confidence 553 4478999999999987
No 165
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=26.93 E-value=1.2e+02 Score=25.24 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=15.2
Q ss_pred Cce-eeEecCCCeEEEEEEe
Q psy10439 84 KAV-MSFETEEEGILAKILV 102 (219)
Q Consensus 84 K~~-~~i~ap~~G~v~~i~v 102 (219)
|.. .-..|+.+|+|.+|.-
T Consensus 165 KSNN~v~~as~~G~I~~I~~ 184 (292)
T 1q90_A 165 KSNNTIYNASAAGKIVAITA 184 (292)
T ss_dssp CCTTSCCBCSSSEEEEEEEE
T ss_pred cccCceecccCCeEEEEEee
Confidence 553 4478999999999987
No 166
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=26.43 E-value=29 Score=29.09 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.6
Q ss_pred eeEeecCCCeecCC------CeEEEEeec
Q psy10439 179 VKWLKKEGDAVVPG------DVLCEIQTD 201 (219)
Q Consensus 179 ~~~~v~~Gd~V~~g------~~l~~ve~~ 201 (219)
.+|.+++|+.|..| ++|+.++..
T Consensus 69 v~~~~~eG~~v~~g~~~~~~~~l~~v~G~ 97 (294)
T 3c2e_A 69 VEWLFKEGSFLEPSKNDSGKIVVAKITGP 97 (294)
T ss_dssp EEESSCTTCEECGGGSSSSCEEEEEEEEE
T ss_pred EEEEeCCCCEeCCCCCCCCCcEEEEEEEc
Confidence 47999999999999 999999864
Done!