RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10439
(219 letters)
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 156 bits (397), Expect = 1e-45
Identities = 65/137 (47%), Positives = 82/137 (59%), Gaps = 7/137 (5%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
EI MP+LSPTM EGT+ KWLKKEGD V GDV+ EI+TDKA M E +EG L KILVPE
Sbjct: 4 EILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPE 63
Query: 105 NTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQII 164
T VKV T IAV++EEGE S + +P+A A A++A+P A + +
Sbjct: 64 GTEGVKVNTPIAVLLEEGES---ASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAP 120
Query: 165 NMP----SLSPTMTEGT 177
P + P + GT
Sbjct: 121 AAPAAEVAADPDIPAGT 137
Score = 100 bits (251), Expect = 9e-25
Identities = 37/56 (66%), Positives = 42/56 (75%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
I MP+LSPTM EGT+ KWLKKEGD V GDV+ EI+TDKA M E +EG L KIL
Sbjct: 5 ILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKIL 60
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model represents one of several closely related clades
of the dihydrolipoamide acetyltransferase subunit of the
pyruvate dehydrogenase complex. It includes sequences
from mitochondria and from alpha and beta branches of
the proteobacteria, as well as from some other bacteria.
Sequences from Gram-positive bacteria are not included.
The non-enzymatic homolog protein X, which serves as an
E3 component binding protein, falls within the clade
phylogenetically but is rejected by its low score
[Energy metabolism, Pyruvate dehydrogenase].
Length = 436
Score = 143 bits (361), Expect = 2e-40
Identities = 65/118 (55%), Positives = 75/118 (63%), Gaps = 9/118 (7%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
+I MP+LSPTMT G + KWLKKEGD V PGDV+ EI+TDKA M FE EEG LAKILVPE
Sbjct: 1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPE 60
Query: 105 NTTDVKVGTLIAVMVEEGED---------WQNVSVSATSPSATASASSASPPPPPPAP 153
T DV V IAV+VEE ED ++ + A PS A + S P P PAP
Sbjct: 61 GTKDVPVNKPIAVLVEEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAP 118
Score = 97.9 bits (244), Expect = 7e-24
Identities = 40/57 (70%), Positives = 44/57 (77%)
Query: 163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
I MP+LSPTMT G + KWLKKEGD V PGDV+ EI+TDKA M FE EEG LAKIL
Sbjct: 1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKIL 57
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 142 bits (360), Expect = 9e-40
Identities = 62/114 (54%), Positives = 75/114 (65%)
Query: 40 LDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAK 99
L QEI MPSLSPTMTEG I +WLKKEGD V+PG+VLCE++TDKA + E EEG LAK
Sbjct: 109 LPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAK 168
Query: 100 ILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAP 153
I+ + ++KVG +IA+ VEE ED S SA +A A P PPPP
Sbjct: 169 IVKGDGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKE 222
Score = 101 bits (254), Expect = 5e-25
Identities = 47/93 (50%), Positives = 54/93 (58%)
Query: 127 NVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEG 186
T S SS+ SS P Q I MPSLSPTMTEG I +WLKKEG
Sbjct: 78 KNGSPMTGSGLFKSLSSSQMQSARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEG 137
Query: 187 DAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
D V PG+VLCE++TDKA + E EEG LAKI+
Sbjct: 138 DKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 170
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 133 bits (338), Expect = 3e-37
Identities = 45/117 (38%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
E KMP L MTEG IV+WL K GD V G L E++TDKA + + G +AK+LV E
Sbjct: 4 EFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEE 63
Query: 105 NTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPG 161
V VG++IAV+ EEGE + +A + A A +P A ++ +
Sbjct: 64 GDV-VPVGSVIAVIEEEGEA---EAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAA 116
Score = 91.8 bits (229), Expect = 8e-22
Identities = 26/57 (45%), Positives = 33/57 (57%)
Query: 163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
MP L MTEG IV+WL K GD V G L E++TDKA + + G +AK+L
Sbjct: 4 EFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLL 60
>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl
acyltransferase component (E2) of 2-oxo acid
dehydrogenases. 2-oxo acid dehydrogenase multienzyme
complexes, like pyruvate dehydrogenase (PDH),
2-oxoglutarate dehydrogenase (OGDH) and branched-chain
2-oxo acid dehydrogenase (BCDH), contain at least three
different enzymes, 2-oxo acid dehydrogenase (E1),
dihydrolipoyl acyltransferase (E2) and dihydrolipoamide
dehydrogenase (E3) and play a key role in redox
regulation. E2, the central component of the complex,
catalyzes the transfer of the acyl group of CoA from E1
to E3 via reductive acetylation of a lipoyl group
covalently attached to a lysine residue.
Length = 74
Score = 110 bits (278), Expect = 6e-32
Identities = 45/75 (60%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
EIKMP L +MTEGTIV+WL KEGD+V GDVL E++TDKA + E G+LAKILV
Sbjct: 1 TEIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVE 60
Query: 104 ENTTDVKVGTLIAVM 118
E T V VG +IAV+
Sbjct: 61 EGDT-VPVGQVIAVI 74
Score = 89.4 bits (223), Expect = 1e-23
Identities = 34/58 (58%), Positives = 41/58 (70%)
Query: 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
I MP L +MTEGTIV+WL KEGD+V GDVL E++TDKA + E G+LAKIL
Sbjct: 1 TEIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKIL 58
>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide acyltransferase (E2) component, and
related enzymes [Energy production and conversion].
Length = 404
Score = 117 bits (296), Expect = 2e-31
Identities = 55/114 (48%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 101
EIKMP L TMTEGTIV+WLKK GD V GDVL E++TDKA M + G+LAKIL
Sbjct: 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL 60
Query: 102 VPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSS 155
V E T V VG +IA + EEG D + + P+A A AS+ + A
Sbjct: 61 VEEGDT-VPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAPATAASAAAGRV 113
Score = 82.8 bits (205), Expect = 1e-18
Identities = 35/56 (62%), Positives = 40/56 (71%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
I MP L TMTEGTIV+WLKK GD V GDVL E++TDKA M + G+LAKIL
Sbjct: 5 IKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL 60
Score = 30.4 bits (69), Expect = 0.64
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 171 PTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEE 212
P G + K L +EGD V G V+ I+ + A E
Sbjct: 49 PAPDAGVLAKILVEEGDTVPVGAVIARIEEEGADAPAAAEAP 90
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 115 bits (290), Expect = 7e-30
Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 8/164 (4%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
E K+P + + E +++WL KEGD V L ++TDKA M + G++ +I V
Sbjct: 4 EFKVPDIG-EVVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKV 62
Query: 105 NTTDVKVGTLIAVMVEEGE---DWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPG 161
T V VG L+AV+ G + +A + +A A+ + A+ P A ++GG V
Sbjct: 63 GDT-VSVGGLLAVIEAAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGV-- 119
Query: 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVM 205
+ +P + +TE +++WL K GD V L ++TDKA M
Sbjct: 120 VEVKVPDIG-EITEVEVIEWLVKVGDTVEEDQSLITVETDKATM 162
Score = 75.2 bits (186), Expect = 8e-16
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 101
E+K+P + +TE +++WL K GD V L ++TDKA M + G++ +I
Sbjct: 118 GVVEVKVPDIG-EITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIK 176
Query: 102 VPENTTDVKVGTLIAVM-VEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVP 160
V V VG+L+ V+ V + +A +P+A A+A+ A P AP++
Sbjct: 177 VKVGDK-VSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAA 235
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 103 bits (258), Expect = 1e-25
Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 18/186 (9%)
Query: 46 IKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN 105
+KMP+L ++TEGT+ WLK GD V + L E+ TDK + G+L +I PE+
Sbjct: 5 VKMPALGESVTEGTVTSWLKAVGDTVEADEPLLEVSTDKVDTEIPSPAAGVLLEIRAPED 64
Query: 106 TTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPS----------- 154
T V+VG ++A++ E GE + S +P+A ++ P P PAP+
Sbjct: 65 DT-VEVGGVLAIIGEPGE-----AGSEPAPAAPEPEAAPEPEAPAPAPTPAAEAPAPAAP 118
Query: 155 -SGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEG 213
+GGS + MP L ++TEGT+ WLK GD V + L E+ TDK + G
Sbjct: 119 QAGGSGEATEVKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAG 178
Query: 214 ILAKIL 219
L +I
Sbjct: 179 TLLEIR 184
Score = 66.2 bits (161), Expect = 9e-13
Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 11/119 (9%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
E+KMP L ++TEGT+ WLK GD V + L E+ TDK + G L +I PE
Sbjct: 128 EVKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPE 187
Query: 105 NTTDVKVGTLIAVM----------VEEGEDWQNVSVSATSPSATASASSASPPPPPPAP 153
+ T V+VGT++A++ EE + + S +P A A A+P PP PAP
Sbjct: 188 DDT-VEVGTVLAIIGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAP 245
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase;
Validated.
Length = 407
Score = 98.4 bits (246), Expect = 4e-24
Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 14/163 (8%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
EIK+P+L ++TE TI W KK GDAV +VL EI+TDK V+ G+L++IL E
Sbjct: 4 EIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEE 63
Query: 105 NTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQII 164
T V VG ++ + E +A + +A A+A++A+ P A ++ +
Sbjct: 64 GDT-VTVGQVLGRIDEGA--------AAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDA 114
Query: 165 NMPSLSPTMTEGTI----VKWLKKEGDAVVPGDVLCEIQTDKA 203
P+ E + VK K G V DVL + A
Sbjct: 115 LSPAARKLAAENGLDASAVKGTGKGG-RVTKEDVLAALAAAAA 156
Score = 62.2 bits (152), Expect = 2e-11
Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
I +P+L ++TE TI W KK GDAV +VL EI+TDK V+ G+L++IL
Sbjct: 5 IKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEIL 60
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit
dihydrolipoyllysine-residue acetyltransferase;
Provisional.
Length = 371
Score = 90.8 bits (226), Expect = 1e-21
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
I MP +MTEG + WL +EGD V GD L +++TDK E G L + +
Sbjct: 3 TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQ 62
Query: 104 ENTTDVKVGTLIAVMVEEG 122
E T + VG L+AV+ +
Sbjct: 63 EGET-LPVGALLAVVADAE 80
Score = 73.1 bits (180), Expect = 3e-15
Identities = 22/58 (37%), Positives = 30/58 (51%)
Query: 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
I MP +MTEG + WL +EGD V GD L +++TDK E G L + +
Sbjct: 3 TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQV 60
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
This model describes the TCA cycle 2-oxoglutarate system
E2 component, dihydrolipoamide succinyltransferase. It
is closely related to the pyruvate dehydrogenase E2
component, dihydrolipoamide acetyltransferase. The seed
for this model includes mitochondrial and Gram-negative
bacterial forms. Mycobacterial candidates are highly
derived, differ in having and extra copy of the
lipoyl-binding domain at the N-terminus. They score
below the trusted cutoff, but above the noise cutoff and
above all examples of dihydrolipoamide acetyltransferase
[Energy metabolism, TCA cycle].
Length = 403
Score = 89.4 bits (222), Expect = 6e-21
Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 13/130 (10%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
EIK+P L+ ++TEGT+ +W KK GD V + + EI+TDK V+ + +G+L +IL E
Sbjct: 2 EIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKE 61
Query: 105 NTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQII 164
T V+ G ++A+ +EEG D AT+ S P A ++ +
Sbjct: 62 GDT-VESGQVLAI-LEEGND-------ATAAPPAKSGEEKEETPAASAAAAPTAAA---- 108
Query: 165 NMPSLSPTMT 174
N PSLSP
Sbjct: 109 NRPSLSPAAR 118
Score = 61.3 bits (149), Expect = 4e-11
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
I +P L+ ++TEGT+ +W KK GD V + + EI+TDK V+ + +G+L +IL
Sbjct: 3 IKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEIL 58
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase;
Validated.
Length = 633
Score = 87.8 bits (218), Expect = 4e-20
Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 17/176 (9%)
Query: 44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
EIK+P + E + + L K GD V L ++ DKA M + + G++ +I V
Sbjct: 3 IEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVK 60
Query: 104 ENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQI 163
V+ G LI + + +A A A P AP++ + +
Sbjct: 61 VGDK-VETGALIMIFESA---------DGAADAAPAQAEEKKEAAPAAAPAAAAA---KD 107
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+++P + E + + L K GD V L ++ DKA M G + +I
Sbjct: 108 VHVPDIG--SDEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIK 161
Score = 81.6 bits (202), Expect = 5e-18
Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 19/164 (11%)
Query: 42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 101
A +++ +P + E + + L K GD V L ++ DKA M G + +I
Sbjct: 104 AAKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIK 161
Query: 102 VPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPG 161
V V G+LI V GE + A+ ++A P AP++ V
Sbjct: 162 VNVGDK-VSTGSLIMVFEVAGE------------APAAAPAAAEAAAPAAAPAAAAGV-- 206
Query: 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVM 205
+ +N+P + E + + + K GD V L ++ DKA M
Sbjct: 207 KDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASM 248
Score = 59.6 bits (145), Expect = 1e-10
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 9/115 (7%)
Query: 41 DAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKI 100
+++ +P + E + + + K GD V L ++ DKA M G + +I
Sbjct: 204 AGVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEI 261
Query: 101 LVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSS 155
V VK G+LI EG + A +P+ +A+ A AP++
Sbjct: 262 KVNVGDK-VKTGSLIMRFEVEG------AAPAAAPAKQEAAAPAPAAAKAEAPAA 309
>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. This family
covers two Prosite entries, the conserved lysine residue
binds biotin in one group and lipoic acid in the other.
Note that the HMM does not currently recognise the
Glycine cleavage system H proteins.
Length = 73
Score = 70.3 bits (173), Expect = 2e-16
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
EIK P + ++ EGT +WL K GD V G VLCE++ K M G++ +ILV E
Sbjct: 2 EIKSPMIGESVKEGT-AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKE 60
Query: 105 NTTDVKVGTLIAVM 118
T V+VG +A +
Sbjct: 61 GDT-VEVGDPLAKI 73
Score = 53.4 bits (129), Expect = 6e-10
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
I P + ++ EGT +WL K GD V G VLCE++ K M G++ +IL
Sbjct: 3 IKSPMIGESVKEGT-AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEIL 57
Score = 27.6 bits (62), Expect = 1.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEI 198
G + + L KEGD V GD L +I
Sbjct: 51 GVVKEILVKEGDTVEVGDPLAKI 73
>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are
present in biotin-dependent carboxylases/decarboxylases,
the dihydrolipoyl acyltransferase component (E2) of
2-oxo acid dehydrogenases, and the H-protein of the
glycine cleavage system (GCS). These domains transport
CO2, acyl, or methylamine, respectively, between
components of the complex/protein via a biotinyl or
lipoyl group, which is covalently attached to a highly
conserved lysine residue.
Length = 73
Score = 66.3 bits (162), Expect = 8e-15
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
I +P L+ + +GT+VKWLKK GD V GDVL EI+ KA E + G + K+LV E
Sbjct: 1 TILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKE 60
Query: 105 NTT 107
T
Sbjct: 61 GTK 63
Score = 61.3 bits (149), Expect = 7e-13
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
I +P L+ + +GT+VKWLKK GD V GDVL EI+ KA E + G + K+L
Sbjct: 1 TILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVL 57
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 67.8 bits (166), Expect = 2e-13
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 1/157 (0%)
Query: 4 LVRSRLTKLASKFINPTYNNAFLNKSKIICLHTTNILDAQQEIKMPSLSPTMTEGTIVKW 63
LV+ L S + H + + + IK+P++ +++EGT+V+W
Sbjct: 5 LVKRLNKPLLSSVKGMFRRFSLRKLQPACSAHFSKSYFSIKVIKVPTMGDSISEGTVVEW 64
Query: 64 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE 123
KK GD V +V+C I+TDK + G++ KI E T V+VG ++ + G
Sbjct: 65 KKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDT-VEVGAPLSEIDTGGA 123
Query: 124 DWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVP 160
+A + A + P S P
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKP 160
Score = 54.7 bits (132), Expect = 6e-09
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+I +P++ +++EGT+V+W KK GD V +V+C I+TDK + G++ KI
Sbjct: 46 VIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIF 102
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 66.8 bits (163), Expect = 6e-13
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 7/176 (3%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
EIK+P + EG +++ L K GD V G L +++DKA M + GI+ +I V
Sbjct: 2 EIKVPDIG-DNEEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKV 60
Query: 105 NTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPP--PPAPSSGGSVPGQ 162
T + VG +IA + E A +A A + A P AP++G S Q
Sbjct: 61 GDT-LPVGGVIATL--EVGAGAQAQAEAKKEAAPAPTAGAPAPAAQAQAAPAAGQSSGVQ 117
Query: 163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218
+ +P + + + T+++ L K GD V L +++DKA M G++ +
Sbjct: 118 EVTVPDIG-DIEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSV 172
Score = 44.9 bits (106), Expect = 1e-05
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
QE+ +P + + + T+++ L K GD V+ L +++DKA M G++ + V
Sbjct: 117 QEVTVPDIG-DIEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKV- 174
Query: 104 ENTTD-VKVGTLIAVM-VEEGEDWQNVSVSATSPSATASASSASPPPPPPAPS 154
D V G LI + V + ++ P+A + A++ P PA +
Sbjct: 175 -KVGDSVPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAA 226
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 52.4 bits (125), Expect = 4e-08
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
E +P + ++T+GT+ +LKK G+ V + + +I+TDK + + G++ + LV E
Sbjct: 93 EAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKE 152
Query: 105 NTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPP 150
T V+ GT +A+ + + ED + S +PS ++ P PP
Sbjct: 153 GDT-VEPGTKVAI-ISKSED----AASQVTPSQKIPETTDPKPSPP 192
Score = 35.9 bits (82), Expect = 0.011
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 166 MPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+P + ++T+GT+ +LKK G+ V + + +I+TDK + + G++ + L
Sbjct: 96 VPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFL 149
>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl
carrier protein (BCCP) domain is present in all
biotin-dependent enzymes, such as acetyl-CoA
carboxylase, pyruvate carboxylase, propionyl-CoA
carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA
carboxylase, oxaloacetate decarboxylase,
methylmalonyl-CoA decarboxylase, transcarboxylase and
urea amidolyase. This domain functions in transferring
CO2 from one subsite to another, allowing carboxylation,
decarboxylation, or transcarboxylation. During this
process, biotin is covalently attached to a specific
lysine.
Length = 67
Score = 47.8 bits (115), Expect = 6e-08
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
GT+VK L KEGD V G L ++ K G++ +ILV E V+ G L+ V
Sbjct: 8 GTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQ-VEAGQLLVV 66
Query: 118 M 118
+
Sbjct: 67 I 67
Score = 38.6 bits (91), Expect = 1e-04
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
GT+VK L KEGD V G L ++ K G++ +IL
Sbjct: 8 GTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEIL 51
Score = 28.2 bits (64), Expect = 0.71
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEI 198
G + + L KEGD V G +L I
Sbjct: 45 GVVKEILVKEGDQVEAGQLLVVI 67
>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component.
Length = 416
Score = 50.1 bits (120), Expect = 2e-07
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 60 IVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL-VPENTTDVKVG-TLIAV 117
+++W KEGD V LCE+Q+DKA + + +G +A+I P + VKVG TL+ +
Sbjct: 15 LLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDI--VKVGETLLKI 72
Query: 118 MVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPS 168
MVE+ + S S P+ +++ S + GS +++ P+
Sbjct: 73 MVEDSQH--LRSDSLLLPTDSSNIVSLA------ESDERGSNLSGVLSTPA 115
Score = 37.8 bits (88), Expect = 0.003
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 178 IVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+++W KEGD V LCE+Q+DKA + + +G +A+I
Sbjct: 15 LLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQIN 56
>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism].
Length = 140
Score = 43.5 bits (103), Expect = 1e-05
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 126 QNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKE 185
+ A+SPSA A+ +AS P P PA ++GG SP + GT+ K +
Sbjct: 39 APAPIEASSPSAAAAQPAASAPAPAPAAAAGG--------TQVTSPMV--GTVYKPFVEV 88
Query: 186 GDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
GD V G L I+ K E +G++ +IL
Sbjct: 89 GDTVKAGQTLAIIEAMKMENEIEAPADGVVKEIL 122
Score = 41.6 bits (98), Expect = 4e-05
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
GT+ K + GD V G L I+ K E +G++ +ILV +N V+ G +AV
Sbjct: 79 GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILV-KNGDPVEYGDPLAV 137
Query: 118 M 118
+
Sbjct: 138 I 138
Score = 27.7 bits (62), Expect = 2.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 46 IKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEI 80
+KM + +G + + L K GD V GD L I
Sbjct: 104 MKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVI 138
>gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional.
Length = 593
Score = 40.7 bits (96), Expect = 4e-04
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 22/103 (21%)
Query: 109 VKV-GTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMP 167
V+V G V V EG D +S +P+A A+A +A+ P A + G+ + P
Sbjct: 482 VEVEGKAYVVKVSEGGD-----ISQITPAAPAAAPAAAAAAAPAAAA------GEPVTAP 530
Query: 168 SLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETE 210
L+ G I K + EG V GDVL ++ M ETE
Sbjct: 531 -LA-----GNIFKVIVTEGQTVAEGDVLLILEA----MKMETE 563
Score = 33.8 bits (78), Expect = 0.056
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETE----EEGILAKILVPENTTDVKVG- 112
G I K + EG VA GDVL ++ M ETE + G + I V E V VG
Sbjct: 533 GNIFKVIVTEGQTVAEGDVLLILEA----MKMETEIRAAQAGTVRGIAVKEGDA-VAVGD 587
Query: 113 TLIAV 117
TL+ +
Sbjct: 588 TLLTL 592
>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed.
Length = 1146
Score = 37.8 bits (89), Expect = 0.004
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFET----EEEGILAKILVPENTTDVKVGT 113
G++V L KEGD V GD L I+ M ET +G + ++LV V+ G
Sbjct: 1085 GSVVTVLVKEGDEVKAGDPLAVIE----AMKMETTITAPVDGTVKRVLVKAGDQ-VEAGD 1139
Query: 114 LIAVMVE 120
L+ +
Sbjct: 1140 LLVELEP 1146
>gnl|CDD|217214 pfam02749, QRPTase_N, Quinolinate phosphoribosyl transferase,
N-terminal domain. Quinolinate phosphoribosyl
transferase (QPRTase) or nicotinate-nucleotide
pyrophosphorylase EC:2.4.2.19 is involved in the de
novo synthesis of NAD in both prokaryotes and
eukaryotes. It catalyzes the reaction of quinolinic
acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in
the presence of Mg2+ to give rise to nicotinic acid
mononucleotide (NaMN), pyrophosphate and carbon
dioxide. The QA substrate is bound between the
C-terminal domain of one subunit, and the N-terminal
domain of the other. The N-terminal domain has an
alpha/beta hammerhead fold.
Length = 88
Score = 34.4 bits (80), Expect = 0.006
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQ 81
V+WL K+G+ V GDV+ EI+
Sbjct: 47 VEWLVKDGERVEAGDVILEIE 67
Score = 33.6 bits (78), Expect = 0.013
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQ 199
V+WL K+G+ V GDV+ EI+
Sbjct: 47 VEWLVKDGERVEAGDVILEIE 67
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 36.9 bits (86), Expect = 0.007
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 94 EGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAP 153
E + A++L+P + D + + +E E V+ A +P+A A +++A+ P PAP
Sbjct: 356 ELLCARMLLPSASDDER---GLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAP 412
Query: 154 SSGGSVPGQ 162
++
Sbjct: 413 AAAAPAAAA 421
Score = 29.2 bits (66), Expect = 2.0
Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 24/109 (22%)
Query: 70 AVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE-GEDWQNV 128
+ P + ++ D V+ F T G LA+ +V L+ + EE G DWQ
Sbjct: 533 ILLPEATVLGVRGDTLVLGFST---GGLARRFASPGNAEV----LVTALAEELGGDWQVE 585
Query: 129 SVSATSPSA----------------TASASSASPPPPPPAPSSGGSVPG 161
+V +P A A+ +A P PA +
Sbjct: 586 AVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAA 634
Score = 28.0 bits (63), Expect = 4.3
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 119 VEEGEDWQNVSVSATSPSATASASSA-SPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGT 177
+ +A +P+A + A +P P PP+P+ G P+ +P+
Sbjct: 409 APAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAP 468
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 36.0 bits (83), Expect = 0.008
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSL---SPTMTEGTIVKWLKKEGD 187
+ +PSA AS+ +P PPPA + S P M SP E V K GD
Sbjct: 169 AQPAPSAPASSPPPTPASPPPAKAPKSSHPPLKSPMAGTFYRSPAPGEPPFV----KVGD 224
Query: 188 AVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
V G V+C I+ K + E ++ G + +IL
Sbjct: 225 KVQKGQVVCIIEAMKLMNEIEADQSGTIVEIL 256
>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated.
Length = 592
Score = 36.0 bits (84), Expect = 0.010
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 17/66 (25%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
GT+VK KEGD V GD + ++ M E E I A + GT+ +
Sbjct: 531 GTVVKVKVKEGDKVKAGDTVLVLEA----MKMENE---IQAPV----------DGTVKEI 573
Query: 118 MVEEGE 123
+V+EG+
Sbjct: 574 LVKEGD 579
Score = 35.2 bits (82), Expect = 0.021
Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 15/83 (18%)
Query: 128 VSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGD 187
+ V P S+ G+V MP GT+VK KEGD
Sbjct: 494 LRVDGMPEEVVVEPLKEIVVGGRPRASAPGAVTS---PMP--------GTVVKVKVKEGD 542
Query: 188 AVVPGDVLCEIQTDKAVMSFETE 210
V GD + ++ M E E
Sbjct: 543 KVKAGDTVLVLEA----MKMENE 561
Score = 32.5 bits (75), Expect = 0.17
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 47 KMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQ 81
KM + +GT+ + L KEGD V PGDVL EI+
Sbjct: 557 KMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591
Score = 32.1 bits (74), Expect = 0.19
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQ 199
GT+ + L KEGD V PGDVL EI+
Sbjct: 568 GTVKEILVKEGDRVNPGDVLMEIE 591
>gnl|CDD|218232 pfam04731, Caudal_act, Caudal like protein activation region. This
family consists of the amino termini of proteins
belonging to the caudal-related homeobox protein family.
This region is thought to mediate transcription
activation. The level of activation caused by mouse Cdx2
is affected by phosphorylation at serine 60 via the
mitogen-activated protein kinase pathway. Caudal family
proteins are involved in the transcriptional regulation
of multiple genes expressed in the intestinal
epithelium, and are important in differentiation and
maintenance of the intestinal epithelial lining. Caudal
proteins always have a homeobox DNA binding domain
(pfam00046).
Length = 135
Score = 34.7 bits (80), Expect = 0.012
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
Query: 123 EDWQNVSVSATSPSATASASSASP-----------PPPPPAPSSGGSVPGQIINMPSLSP 171
EDW S P +A+A++ SP P PP P G P ++ LSP
Sbjct: 57 EDW---SAYGPGPGPSATAATGSPGQMAYSPPDYSPVHPPGPGPGLLQPADSGSVEQLSP 113
Query: 172 TMTEGTIVKWLKK 184
+ + +W++K
Sbjct: 114 SAQRRSPYEWMRK 126
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 35.9 bits (83), Expect = 0.012
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 126 QNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTI 178
Q + +A SPS + S+++A P P A G+ P ++ P+ P T
Sbjct: 391 QPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTA 443
>gnl|CDD|180811 PRK07051, PRK07051, hypothetical protein; Validated.
Length = 80
Score = 33.1 bits (76), Expect = 0.018
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 65 KKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
+ GDAVA GDV+ I+ K E E G + + LV E+ V+ G ++A
Sbjct: 26 VEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLV-EDGEPVEAGQVLAR 77
Score = 29.6 bits (67), Expect = 0.33
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 144 ASPPPPP----PAPSSGGSVPGQIINMPSLSPTMTE--GTIVKWLKKEGDAVVPGDVLCE 197
SP PP + G V G I M + E G +V++L ++G+ V G VL
Sbjct: 18 PSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLAR 77
Query: 198 IQT 200
I+
Sbjct: 78 IEE 80
Score = 26.1 bits (58), Expect = 4.3
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 48 MPSLSPTMTE--GTIVKWLKKEGDAVAPGDVLCEIQT 82
M + E G +V++L ++G+ V G VL I+
Sbjct: 44 MKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIEE 80
Score = 25.7 bits (57), Expect = 7.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 183 KKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+ GDAV GDV+ I+ K E E G + + L
Sbjct: 26 VEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFL 62
>gnl|CDD|238806 cd01572, QPRTase, Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase), also called
nicotinate-nucleotide pyrophosphorylase, is involved in
the de novo synthesis of NAD in both prokaryotes and
eukaryotes. It catalyses the reaction of quinolinic
acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP)
in the presence of Mg2+ to produce nicotinic acid
mononucleotide (NAMN), pyrophosphate and carbon
dioxide. QPRTase functions as a homodimer with two
active sites, each formed by the C-terminal region of
one subunit and the N-terminal region of the other.
Length = 268
Score = 34.0 bits (79), Expect = 0.034
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQ 81
V+WL K+GD V PG VL ++
Sbjct: 60 VEWLVKDGDRVEPGQVLATVE 80
Score = 33.2 bits (77), Expect = 0.076
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQ 199
V+WL K+GD V PG VL ++
Sbjct: 60 VEWLVKDGDRVEPGQVLATVE 80
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 34.0 bits (78), Expect = 0.063
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 103 PENTTDVKVGTLIAV--MVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVP 160
PEN + I + + E W S S+++S SP P P +P SG +
Sbjct: 251 PENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPS 310
Query: 161 G 161
Sbjct: 311 S 311
Score = 31.7 bits (72), Expect = 0.35
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 119 VEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVP 160
+ S S+TS S+ +S +A P P P+ S S P
Sbjct: 315 SSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRP 356
Score = 29.8 bits (67), Expect = 1.3
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 125 WQNVSVSATSPSATASASSASPPPP----PPAPSSGGSVPGQIINMPSLSPT 172
Q ++ + SS PP P A S I+ + SP
Sbjct: 170 RQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPA 221
>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 130
Score = 32.5 bits (74), Expect = 0.069
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 8/59 (13%)
Query: 132 ATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVV 190
A++P + +S P P + MPS P GTI+K L GD V
Sbjct: 34 ASTPVPVPTEASPQVEAQAPQP----AAAAGADAMPSPMP----GTILKVLVAVGDQVT 84
>gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and
conversion].
Length = 1149
Score = 33.5 bits (77), Expect = 0.075
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
G +V+ K+GD V GDVL I+ K + +G + ++LV + + G L+ V
Sbjct: 1088 GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQ-IDGGDLLVV 1146
Query: 118 MVE 120
+ E
Sbjct: 1147 VEE 1149
Score = 27.7 bits (62), Expect = 5.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
G +V+ K+GD V GDVL I+ K + +G + ++L
Sbjct: 1088 GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVL 1131
>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit
[Lipid metabolism].
Length = 645
Score = 33.4 bits (77), Expect = 0.080
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
GT+V KEG V+ GD+L ++ K + +G++AK+ V E V VGT++
Sbjct: 584 GTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQ-VAVGTVLVE 642
Query: 118 MVE 120
E
Sbjct: 643 FEE 645
Score = 27.6 bits (62), Expect = 6.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218
GT+V KEG V GD+L ++ K + +G++AK+
Sbjct: 584 GTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKL 626
>gnl|CDD|222128 pfam13437, HlyD_3, HlyD family secretion protein. This is a family
of largely bacterial haemolysin translocator HlyD
proteins.
Length = 102
Score = 31.6 bits (72), Expect = 0.086
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 16/105 (15%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE-NTTDVKVGTLIA 116
G + + +EG VA GD L EI + + VP + +KVG +
Sbjct: 8 GVVAELDVEEGQVVAAGDPLAEIVDPDTLW----------VEASVPAEDAASLKVGQKVT 57
Query: 117 VMVEEGEDWQ-NVSVSATSPSATASASS----ASPPPPPPAPSSG 156
+ +++G D+ VS+ SPS + AS P P G
Sbjct: 58 LKLDDGPDYTLPGKVSSISPSVDPQTGTYTVEASIPNPDLPLRPG 102
>gnl|CDD|223235 COG0157, NadC, Nicotinate-nucleotide pyrophosphorylase [Coenzyme
metabolism].
Length = 280
Score = 32.9 bits (76), Expect = 0.092
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQ 81
++WL K+GD V PGDVL EI+
Sbjct: 66 IQWLVKDGDRVKPGDVLAEIE 86
Score = 32.2 bits (74), Expect = 0.18
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQ 199
++WL K+GD V PGDVL EI+
Sbjct: 66 IQWLVKDGDRVKPGDVLAEIE 86
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III
synthetase/uroporphyrin-III C-methyltransferase;
Reviewed.
Length = 656
Score = 33.2 bits (76), Expect = 0.098
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 127 NVSVSATSPSATASASSASPPPPPPAPSSGGSVPG 161
N S S TS A A+A+ A PP PP P + G
Sbjct: 286 NDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRG 320
>gnl|CDD|238802 cd01568, QPRTase_NadC, Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase), also called
nicotinate-nucleotide pyrophosphorylase, is involved in
the de novo synthesis of NAD in both prokaryotes and
eukaryotes. It catalyses the reaction of quinolinic
acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP)
in the presence of Mg2+ to produce nicotinic acid
mononucleotide (NAMN), pyrophosphate and carbon
dioxide. QPRTase functions as a homodimer with two
active sites, each formed by the C-terminal region of
one subunit and the N-terminal region of the other.
Length = 269
Score = 32.8 bits (76), Expect = 0.10
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQ 81
V+WL K+GD V G VL E++
Sbjct: 59 VEWLVKDGDRVEAGQVLLEVE 79
Score = 31.3 bits (72), Expect = 0.33
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQ 199
V+WL K+GD V G VL E++
Sbjct: 59 VEWLVKDGDRVEAGQVLLEVE 79
>gnl|CDD|180286 PRK05848, PRK05848, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 273
Score = 32.7 bits (75), Expect = 0.11
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVM 205
G + K+G+ GD+L EI+ D +++
Sbjct: 55 MTGIECVFTIKDGERFKKGDILMEIEGDFSML 86
Score = 32.3 bits (74), Expect = 0.15
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVM 87
G + K+G+ GD+L EI+ D +++
Sbjct: 55 MTGIECVFTIKDGERFKKGDILMEIEGDFSML 86
>gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit. This
model describes the bacterial oxaloacetate decarboxylase
alpha subunit and its equivalents in archaea. The
oxaloacetate decarboxylase Na+ pump is the paradigm of
the family of Na+ transport decarboxylases that present
in bacteria and archaea. It a multi subunit enzyme
consisting of a peripheral alpha-subunit and integral
membrane subunits beta and gamma. The energy released by
the decarboxylation reaction of oxaloacetate is coupled
to Na+ ion pumping across the membrane [Transport and
binding proteins, Cations and iron carrying compounds,
Energy metabolism, Other].
Length = 582
Score = 32.8 bits (75), Expect = 0.14
Identities = 31/112 (27%), Positives = 40/112 (35%), Gaps = 27/112 (24%)
Query: 112 GTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSP 171
G V V G D VS + SA A+ S + A V I
Sbjct: 481 GKAFVVKVSPGGD-----VSQITASAPANTSGGTVAAKAGAG---TPVTAPI-------- 524
Query: 172 TMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETE----EEGILAKIL 219
G+IVK EG V G+VL ++ M ETE G + +IL
Sbjct: 525 ---AGSIVKVKVSEGQTVAEGEVLLILEA----MKMETEIKAAAAGTVREIL 569
Score = 29.0 bits (65), Expect = 2.2
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETE----EEGILAKILV 102
G+IVK EG VA G+VL ++ M ETE G + +ILV
Sbjct: 526 GSIVKVKVSEGQTVAEGEVLLILEA----MKMETEIKAAAAGTVREILV 570
>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 153
Score = 31.8 bits (72), Expect = 0.15
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 28/99 (28%)
Query: 128 VSVSATSPSATASASSASPPPPPPAPSSGGS------VPGQII----------------- 164
A +P+ ++ + +P P PAP+S G +PG+I+
Sbjct: 54 TPAPAPAPAVPSAPTPVAPAAPAPAPASAGENVVTAPMPGKILRILVREGQQVKVGQGLL 113
Query: 165 -----NMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEI 198
M + P +G + K L KEGD V G L E+
Sbjct: 114 ILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152
Score = 27.1 bits (60), Expect = 5.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 46 IKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEI 80
+KM + P +G + K L KEGD V G L E+
Sbjct: 118 MKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152
Score = 26.4 bits (58), Expect = 9.6
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 128 VSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGD 187
V +P+ + + S P P + P ++ G I++ L +EG
Sbjct: 48 VQEQVPTPAPAPAPAVPSAPTPVAPAAPA---PAPASAGENVVTAPMPGKILRILVREGQ 104
Query: 188 AVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
V G L ++ K ++G++ KIL
Sbjct: 105 QVKVGQGLLILEAMKMENEIPAPKDGVVKKIL 136
>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
Length = 586
Score = 32.4 bits (75), Expect = 0.17
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 25/82 (30%)
Query: 46 IKMPSLSPTMTEGTIVKW----LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 101
+ +P+L KW K GD V GD+L +Q E I KI+
Sbjct: 107 VYVPALDRE------KKWEFTPTVKVGDKVEAGDILGTVQ----------ETPSIEHKIM 150
Query: 102 VPENTTDVKVGTLIAVMVEEGE 123
VP + GT+ + V EG+
Sbjct: 151 VPPGVS----GTVKEI-VSEGD 167
Score = 27.1 bits (61), Expect = 8.3
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 180 KW----LKKEGDAVVPGDVLCEIQ 199
KW K GD V GD+L +Q
Sbjct: 117 KWEFTPTVKVGDKVEAGDILGTVQ 140
>gnl|CDD|205711 pfam13533, Biotin_lipoyl_2, Biotin-lipoyl like.
Length = 50
Score = 29.4 bits (67), Expect = 0.19
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDK 84
G +V KEG +V GDVL + +++
Sbjct: 11 GRVVAVNVKEGQSVKKGDVLFTLDSEE 37
Score = 27.8 bits (63), Expect = 0.59
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTDK 202
G +V KEG +V GDVL + +++
Sbjct: 11 GRVVAVNVKEGQSVKKGDVLFTLDSEE 37
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 32.2 bits (73), Expect = 0.21
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 132 ATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSP 171
+P + + +P PPPP+PS + P P
Sbjct: 2610 GPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPP 2649
Score = 31.4 bits (71), Expect = 0.43
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 131 SATSPSATASASSASPPPPPPAPSS----GGSVPG 161
+ P T++ +A PPPP P P S G PG
Sbjct: 2825 AGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG 2859
Score = 28.4 bits (63), Expect = 3.6
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 128 VSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSP 171
+V A + + +AS A P PPP + P PSL
Sbjct: 2809 AAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL 2852
Score = 27.6 bits (61), Expect = 6.5
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 130 VSAT-SPSATASASSASPPPP----PPAPSSGGSVPG 161
VSAT P A+A ASP P PPA +G + PG
Sbjct: 2716 VSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPG 2752
Score = 27.6 bits (61), Expect = 6.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 132 ATSPSATASASSASPPPPPPAPSS 155
A P+ + S A PPPPPP P
Sbjct: 2687 AARPTVGSLTSLADPPPPPPTPEP 2710
>gnl|CDD|181304 PRK08225, PRK08225, acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 70
Score = 29.4 bits (66), Expect = 0.30
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 56 TEGTIVKWLKKEGDAVAPGDVLCEIQ 81
GT+ K +EGD V GDVL EI+
Sbjct: 45 EAGTVKKINVQEGDFVNEGDVLLEIE 70
Score = 29.0 bits (65), Expect = 0.45
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 174 TEGTIVKWLKKEGDAVVPGDVLCEIQ 199
GT+ K +EGD V GDVL EI+
Sbjct: 45 EAGTVKKINVQEGDFVNEGDVLLEIE 70
>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal.
Length = 313
Score = 31.3 bits (71), Expect = 0.36
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 130 VSATSPSATASASSASPPPPPPAPSS 155
V+A + A +SSA PPPP P
Sbjct: 215 VAAAKSALPAVSSSAPSAPPPPPPPP 240
Score = 30.9 bits (70), Expect = 0.38
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 130 VSATSPSATASASSASPPPPPPAPSSGGSVP 160
+A S S+S+ S PPPPP P
Sbjct: 216 AAAKSALPAVSSSAPSAPPPPPPPPPPSVPT 246
Score = 29.0 bits (65), Expect = 1.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 126 QNVSVSATSPSATASASSASPPPPPPAP 153
V+ + ++ A +S++ ++PPPPPP P
Sbjct: 213 GPVAAAKSALPAVSSSAPSAPPPPPPPP 240
Score = 27.9 bits (62), Expect = 4.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 122 GEDWQNVSVSATSPSATASASSASPPPPPPAP 153
G W A + SA + SS++P PPP P
Sbjct: 206 GLTWSKKGPVAAAKSALPAVSSSAPSAPPPPP 237
Score = 27.5 bits (61), Expect = 6.6
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 121 EGEDWQNVSVSATSPSATASASSASPPPPPPAPS 154
+G S S+ SA PPPPPP+
Sbjct: 212 KGPVAAAKSALPAVSSSAPSAPPPPPPPPPPSVP 245
>gnl|CDD|227315 COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].
Length = 866
Score = 31.4 bits (71), Expect = 0.38
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 117 VMVEEGEDWQNVSVSATSPSATASASS-ASPPPPPPAPSSGGSVPGQIINMPSLSPTMTE 175
+ AT P+ ASA + A+ P P A ++ + + + P +
Sbjct: 1 DPFATDAKEEPAKEEATPPAPAASAPAPAAAAPAPVAAAAPAAAGPRPDDEPFKASDALH 60
Query: 176 GTIVKWLKKEGDAVVPGD 193
+ LKK D + D
Sbjct: 61 ALVALKLKKRIDQIEALD 78
>gnl|CDD|235900 PRK06978, PRK06978, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 294
Score = 30.9 bits (70), Expect = 0.50
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 48 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQ 81
M ++ P++ V W +EGD + +CE++
Sbjct: 75 MRAVDPSIE----VTWRYREGDRMTADSTVCELE 104
Score = 28.9 bits (65), Expect = 2.0
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 166 MPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQ 199
M ++ P++ V W +EGD + +CE++
Sbjct: 75 MRAVDPSIE----VTWRYREGDRMTADSTVCELE 104
>gnl|CDD|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type
II; This family contains two enzymes that play an
important role in NAD production by either allowing
quinolinic acid (QA) , quinolinate phosphoribosyl
transferase (QAPRTase), or nicotinic acid (NA),
nicotinate phosphoribosyltransferase (NAPRTase), to be
used in the synthesis of NAD. QAPRTase catalyses the
reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide
(NAMN), pyrophosphate and carbon dioxide, an important
step in the de novo synthesis of NAD. NAPRTase
catalyses a similar reaction leading to NAMN and
pyrophosphate, using nicotinic acid an PPRP as
substrates, used in the NAD salvage pathway.
Length = 281
Score = 30.3 bits (69), Expect = 0.67
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQ-TDKAVMSFET 91
G +V EG V PG+ L I+ + ++ E
Sbjct: 49 GPLVILAVPEGTVVEPGEPLLTIEGPARELLLLER 83
Score = 28.7 bits (65), Expect = 2.3
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQ-TDKAVMSFET 209
G +V EG V PG+ L I+ + ++ E
Sbjct: 49 GPLVILAVPEGTVVEPGEPLLTIEGPARELLLLER 83
>gnl|CDD|133457 cd06848, GCS_H, Glycine cleavage H-protein. Glycine cleavage
H-proteins are part of the glycine cleavage system
(GCS) found in bacteria, archea and the mitochondria of
eukaryotes. GCS is a multienzyme complex consisting of
4 different components (P-, H-, T- and L-proteins)
which catalyzes the oxidative cleavage of glycine. The
H-protein shuttles the methylamine group of glycine
from the P-protein (glycine dehydrogenase) to the
T-protein (aminomethyltransferase) via a lipoyl group,
attached to a completely conserved lysine residue.
Length = 96
Score = 29.0 bits (66), Expect = 0.69
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 58 GTIVK-WLKKEGDAVAPGDVLCEIQTDKAVMSF 89
G IV L + G V GD +++ KA
Sbjct: 29 GDIVFVELPEVGTEVKKGDPFGSVESVKAASDL 61
Score = 28.3 bits (64), Expect = 1.0
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 176 GTIVK-WLKKEGDAVVPGDVLCEIQTDKAVMSF 207
G IV L + G V GD +++ KA
Sbjct: 29 GDIVFVELPEVGTEVKKGDPFGSVESVKAASDL 61
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 30.2 bits (68), Expect = 0.75
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 80 IQTDKAVMSFETEEEGIL--AKILVPENT---TDVKVGTLIAVMVEEGEDWQNVSVSATS 134
I+ ++ ++ ++ ++ KIL + T +K + VMV + + +
Sbjct: 30 IEAEQGKDAYPVAQQKLIYSGKILSDDKTVKEYKIKEKDFVVVMVSKP---KTGTGKVAP 86
Query: 135 PSATASASSASPPPPPPAPSSGGSVP 160
P+AT +++ P PP +P+SG S
Sbjct: 87 PAATPTSAPTPTPSPPASPASGMSAA 112
>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase. This enzyme plays a
role in gluconeogensis but not glycolysis [Energy
metabolism, Glycolysis/gluconeogenesis].
Length = 1143
Score = 30.6 bits (69), Expect = 0.78
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
G I++ G AV GD L ++ K + + ++G + ++LV + + L+ V
Sbjct: 1083 GVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLV-KAGEQIDAKDLLLV 1141
Query: 118 M 118
+
Sbjct: 1142 L 1142
Score = 27.5 bits (61), Expect = 7.9
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
G I++ G AV GD L ++ K + + ++G + ++L
Sbjct: 1083 GVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVL 1126
>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 578
Score = 30.5 bits (69), Expect = 0.81
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 15/58 (25%)
Query: 66 KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE 123
KEGD V GD++ + E I KILVP N G ++ + EEG+
Sbjct: 122 KEGDKVEGGDIIGVVP----------ETSLIEHKILVPPNVE----GEIVEI-AEEGD 164
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 30.5 bits (69), Expect = 0.81
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 128 VSVSATSPSATASASSASPPPPPPAPSS 155
A +P+A ASA +A P PPAP +
Sbjct: 400 APAPAAAPAAAASAPAAPPAAAPPAPVA 427
Score = 28.5 bits (64), Expect = 3.1
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 128 VSVSATSPSATASASSASPPPPPPAPSSG 156
+ +A +P+A +A++++P PP A
Sbjct: 396 QAAAAPAPAAAPAAAASAPAAPPAAAPPA 424
Score = 27.0 bits (60), Expect = 8.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 128 VSVSATSP-SATASASSASPPPPPPAPSSGGSVP 160
V+ +A +P A A A++AS P PPA + V
Sbjct: 394 VAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVA 427
>gnl|CDD|232814 TIGR00078, nadC, nicotinate-nucleotide pyrophosphorylase. Synonym:
quinolinate phosphoribosyltransferase (decarboxylating)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pyridine nucleotides].
Length = 265
Score = 29.9 bits (68), Expect = 0.95
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQ 199
V+WL K+GD V PG+V+ E++
Sbjct: 56 VEWLVKDGDRVEPGEVVAEVE 76
Score = 29.9 bits (68), Expect = 0.97
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQ 81
V+WL K+GD V PG+V+ E++
Sbjct: 56 VEWLVKDGDRVEPGEVVAEVE 76
>gnl|CDD|220654 pfam10254, Pacs-1, PACS-1 cytosolic sorting protein. PACS-1 is a
cytosolic sorting protein that directs the localisation
of membrane proteins in the trans-Golgi network
(TGN)/endosomal system. PACS-1 connects the clathrin
adaptor AP-1 to acidic cluster sorting motifs contained
in the cytoplasmic domain of cargo proteins such as
furin, the cation-independent mannose-6-phosphate
receptor and in viral proteins such as human
immunodeficiency virus type 1 Nef.
Length = 413
Score = 30.2 bits (68), Expect = 0.96
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 108 DVKVGTL---IAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQ 162
VKVG + A + ++ V ++SP +++ AS + PPP+PS S+
Sbjct: 206 VVKVGLVECEQASADLDDSAALSLFVLSSSPPSSSGASKEASATPPPSPSMSSSLSAA 263
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 30.2 bits (68), Expect = 0.98
Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 11/83 (13%)
Query: 101 LVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASAS-----------SASPPPP 149
E TT V+ E + A S S TA S S +
Sbjct: 40 TEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSEATDTTTSEARTVT 99
Query: 150 PPAPSSGGSVPGQIINMPSLSPT 172
P A + V GQ +++ LS T
Sbjct: 100 PAATETSKPVEGQTVDVRILSTT 122
>gnl|CDD|237873 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 527
Score = 30.1 bits (68), Expect = 0.99
Identities = 9/57 (15%), Positives = 15/57 (26%)
Query: 130 VSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEG 186
S + A + P++ + P S +V LK G
Sbjct: 361 SEQDSGAGRAPGAVPGVNRTRAVPTAAPAAPAAATPSDRQSFNGNWRALVDQLKLSG 417
>gnl|CDD|234937 PRK01294, PRK01294, lipase chaperone; Provisional.
Length = 336
Score = 30.0 bits (68), Expect = 1.00
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 129 SVSATSPSATASASSASPPPPPPAPSSGGSVPGQIIN 165
+ +A +A A A++ + PA +G SVPG ++
Sbjct: 41 AAAAALSAAAAPAAADAAVAALPASLAGTSVPGLPLD 77
>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional.
Length = 991
Score = 30.2 bits (68), Expect = 1.0
Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 25/132 (18%)
Query: 97 LAKILV----PENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPP--- 149
L+++LV P V+VG A + E D V T ATA A+ PP
Sbjct: 863 LSRVLVSVREPRTEGGVRVG--YAPTLAEALD--QVFGPGTGRVATAPGGDAASAPPPGA 918
Query: 150 -PPAPSSGGSVP--GQIINMPSLSPTMTEGTI---------VKWLKKEGDAVVPGDVLCE 197
PPAP P Q P P + + ++ ++ GD G L
Sbjct: 919 GPPAPPQAVPPPRTTQPPAAPPRGPDVPPAAVAELRETLADLRSAQRSGDFTAYGAALDR 978
Query: 198 IQTDKAVMSFET 209
++ KA+ ++ET
Sbjct: 979 LE--KAIDAYET 988
>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy
production and conversion].
Length = 588
Score = 29.9 bits (68), Expect = 1.0
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 19/66 (28%)
Query: 62 KW----LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
KW K+GD V PGDVL +Q ET ++ ++ V +
Sbjct: 115 KWDFVPAVKKGDTVYPGDVLGTVQ--------ETS---LITHRIMVPP----GVSGKVTW 159
Query: 118 MVEEGE 123
+ EEGE
Sbjct: 160 IAEEGE 165
>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase. Members of this family are
ATP-dependent urea carboxylase, including characterized
members from Oleomonas sagaranensis (alpha class
Proteobacterium) and yeasts such as Saccharomyces
cerevisiae. The allophanate hydrolase domain of the yeast
enzyme is not included in this model and is represented
by an adjacent gene in Oleomonas sagaranensis. The fusion
of urea carboxylase and allophanate hydrolase is
designated urea amidolyase. The enzyme from Oleomonas
sagaranensis was shown to be highly active on acetamide
and formamide as well as urea [Central intermediary
metabolism, Nitrogen metabolism].
Length = 1201
Score = 30.0 bits (68), Expect = 1.1
Identities = 20/100 (20%), Positives = 28/100 (28%), Gaps = 16/100 (16%)
Query: 120 EEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIV 179
E W + A + +P P V + G
Sbjct: 1101 AERARWIASGNADL-----AEEVTEAPEEEADLPEGAEQVESEY-----------AGNFW 1144
Query: 180 KWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
K L + GD V G L ++ K M G + KIL
Sbjct: 1145 KVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKIL 1184
Score = 29.2 bits (66), Expect = 1.9
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
G K L + GD V G L ++ K M G + KIL + V G ++AV
Sbjct: 1141 GNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILC-QPGDMVDAGDIVAV 1199
Query: 118 M 118
+
Sbjct: 1200 L 1200
>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase;
Provisional.
Length = 507
Score = 29.7 bits (66), Expect = 1.1
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 13/56 (23%)
Query: 128 VSVSATSP----------SATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTM 173
VS AT P S A+A++A+P P PA ++ G G + + +LSPT+
Sbjct: 50 VSTQATGPELASIADAVQSVVAAAAAAAPAPLQPAVATIG---GDLAALATLSPTL 102
>gnl|CDD|147982 pfam06112, Herpes_capsid, Gammaherpesvirus capsid protein. This
family consists of several Gammaherpesvirus capsid
proteins. The exact function of this family is unknown.
Length = 148
Score = 29.0 bits (65), Expect = 1.2
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGGSV------PGQIINMPSLSPT 172
S+ + +AS+SSAS P SG S PG + + SLS +
Sbjct: 86 SSIGSALSASSSSASGVPGGANQLSGSSGSALSSGPGSLSSSSSLSGS 133
>gnl|CDD|110645 pfam01659, Luteo_Vpg, Luteovirus putative VPg genome linked
protein. This family consists of several putative
genome linked proteins. The genomic RNA of luteoviruses
are linked to virally encoded genome proteins (VPg).
Open reading frame 4 is thought to encode the VPg in
Soybean dwarf luteovirus. Luteoviruses have isometric
capsids that contain a positive stand ssRNA genome, they
have no DNA stage during their replication.
Length = 105
Score = 28.3 bits (63), Expect = 1.3
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 142 SSASPPPPPPAPSSGGSVPGQIINMPSLSPTMT 174
SS P PPPP PS P N PT+T
Sbjct: 60 SSPRPLPPPPVPSLMNWTP--TANNQPSVPTLT 90
>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed.
Length = 327
Score = 29.3 bits (66), Expect = 1.5
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 129 SVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEG 176
S S +S + ++ +++ + A + P Q I+ P +SPT T+
Sbjct: 84 SSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQA 131
>gnl|CDD|215974 pfam00529, HlyD, HlyD family secretion protein.
Length = 304
Score = 29.0 bits (65), Expect = 1.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEI 80
G +++ L KEGD V GDVL +
Sbjct: 11 GIVIRILVKEGDRVKAGDVLVRL 33
Score = 26.7 bits (59), Expect = 9.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEI 198
G +++ L KEGD V GDVL +
Sbjct: 11 GIVIRILVKEGDRVKAGDVLVRL 33
>gnl|CDD|222254 pfam13598, DUF4139, Domain of unknown function (DUF4139). This
family is usually found at the C-terminus of proteins.
Length = 264
Score = 29.1 bits (66), Expect = 1.6
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 122 GEDWQNVSVSATSPSATAS-ASSASPPPPPP 151
GEDW +V ++ +TA SPP P
Sbjct: 40 GEDWNDVDLTL----STARPGRGGSPPELSP 66
>gnl|CDD|152115 pfam11679, DUF3275, Protein of unknown function (DUF3275). This
family of proteins with unknown function appear to be
restricted to Proteobacteria.
Length = 211
Score = 29.1 bits (65), Expect = 1.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 129 SVSATSPSATASASSASPPPPPPAPSSGGSVPGQI 163
S ++ +P A+A A + SP P PA +I
Sbjct: 104 SPASAAPVASAPAPAPSPQSPKPASRRASRDMRRI 138
>gnl|CDD|178678 PLN03132, PLN03132, NADH dehydrogenase (ubiquinone) flavoprotein 1;
Provisional.
Length = 461
Score = 29.5 bits (66), Expect = 1.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGGSVPGQ 162
+T +ATA+ PPPPPP + G + +
Sbjct: 5 FSTQAAATAATPQPPPPPPPPEKTHFGGLKDE 36
Score = 29.1 bits (65), Expect = 2.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 132 ATSPSATASASSASPPPPPPAPS 154
A S A A+A++ PPPPPP P
Sbjct: 4 AFSTQAAATAATPQPPPPPPPPE 26
>gnl|CDD|237788 PRK14687, PRK14687, hypothetical protein; Provisional.
Length = 173
Score = 28.4 bits (63), Expect = 1.8
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 92 EEEGILAKILVPENTTDVKVGTLIAVMVEEGEDW 125
+E+G+ IL+ N KVG L VM+E+G+ W
Sbjct: 45 QEQGL---ILIARNWQQPKVGELDLVMLEKGQAW 75
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 29.1 bits (65), Expect = 2.0
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 17 INPTYNNAFLNKSKIICLHTTNILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDV 76
+N Y N F + +C+ +T ++ ++ TM G+I ++KKEGD V GD
Sbjct: 526 VNSKYCNVFTENKRAVCIISTAEFG---KVAFVAIGATMV-GSI-TFVKKEGDHVKKGDE 580
Query: 77 L 77
L
Sbjct: 581 L 581
>gnl|CDD|183252 PRK11640, PRK11640, putative transcriptional regulator;
Provisional.
Length = 191
Score = 28.4 bits (64), Expect = 2.0
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 75 DVLCEIQTDKAVMSFETEE---EGILAKILVPENTTDVKVGTLIA 116
++L E++ D M + E EG L+++LV + DV +A
Sbjct: 131 ELLTELEIDDPAMVAKQMELILEGCLSRLLVKRSQADVDTAKRLA 175
>gnl|CDD|218761 pfam05815, DUF844, Baculovirus protein of unknown function
(DUF844). This family consists of several Baculovirus
sequences of between 350 and 380 residues long. The
family has no known function.
Length = 359
Score = 28.8 bits (65), Expect = 2.3
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 103 PENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQ 162
P+ T ++ + L + +N V T+ +A AS + P AP++ S
Sbjct: 36 PDATINLSLDELSDFLNTVARAAENAIV--TNNAALASQYNGPPANANAAPATASSPRRP 93
Query: 163 IINM 166
++N+
Sbjct: 94 VLNL 97
>gnl|CDD|165416 PHA03145, PHA03145, helicase-primase primase subunit; Provisional.
Length = 1058
Score = 29.2 bits (65), Expect = 2.3
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 17/58 (29%)
Query: 123 EDWQNVSVSATSPSATASASSASPPPPPPA-----------------PSSGGSVPGQI 163
+DW ++ A P+A SA++A+ P P A P +G + GQ+
Sbjct: 546 DDWARITRDARLPAADVSAAAAAAPRDPGALGLRLTWRVHARNPVTAPPTGPTAAGQM 603
>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
family. The proteins represented by this model contain
three RNA recognition motifs (rrm: pfam00076) and have
been characterized as poly-pyrimidine tract binding
proteins associated with RNA splicing factors. In the
case of PUF60 (GP|6176532), in complex with p54, and in
the presence of U2AF, facilitates association of U2
snRNP with pre-mRNA.
Length = 612
Score = 28.9 bits (64), Expect = 2.4
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 129 SVSATSPSATASASSASPPPPPPAP-SSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGD 187
+ +A +A A A +A P +P + S+P I N +S E V L +
Sbjct: 307 AATAKIMAAEAVAGAAVLGPRAQSPATPSSSLPTDIGNKAVVSSAKKEAEEVPPLPQAAP 366
Query: 188 AVVPGDVL 195
AVV +
Sbjct: 367 AVVKPGPM 374
>gnl|CDD|217059 pfam02480, Herpes_gE, Alphaherpesvirus glycoprotein E.
Glycoprotein E (gE) of Alphaherpesvirus forms a complex
with glycoprotein I (gI) (pfam01688), functioning as an
immunoglobulin G (IgG) Fc binding protein. gE is
involved in virus spread but is not essential for
propagation.
Length = 437
Score = 28.5 bits (64), Expect = 2.6
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 127 NVSVSATSPSATASASSASPPPPPPAPSSGGSVPG 161
NV V P A S PPPP P P + + P
Sbjct: 310 NVVVEVHRPRLGALDSIEPPPPPTPTPPAEIAPPS 344
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 28.7 bits (65), Expect = 3.0
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 103 PENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSS 155
P +T A + + +P+ A++A PP PA ++
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA 90
Score = 28.3 bits (64), Expect = 3.6
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGGSVP 160
+ + + +A+ P PP P++ +
Sbjct: 64 AKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93
Score = 28.3 bits (64), Expect = 3.7
Identities = 4/34 (11%), Positives = 9/34 (26%)
Query: 129 SVSATSPSATASASSASPPPPPPAPSSGGSVPGQ 162
+ A A + + + P P +
Sbjct: 60 AAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93
Score = 28.3 bits (64), Expect = 4.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 123 EDWQNVSVSATSPSATASASSASPPPPPPAPS 154
D+ S +A + +A A+A++AS P PA
Sbjct: 34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAK 65
>gnl|CDD|221459 pfam12200, DUF3597, Domain of unknown function (DUF3597). This
family of proteins is found in bacteria, eukaryotes and
viruses. Proteins in this family are typically between
126 and 281 amino acids in length. The function of this
domain is unknown. The structure of this domain has been
found to contain five helices with a long flexible loop
between helices one and two.
Length = 124
Score = 27.3 bits (61), Expect = 3.1
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 132 ATSPSATASASSASPPPPPPAPSSGGSVPGQI 163
A +P+ A+ ++A AP++ +
Sbjct: 15 AAAPAPAAAPATAPAAAAAAAPAATPPAAASV 46
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 28.5 bits (63), Expect = 3.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 128 VSVSATSPSATASASSASPPPPPPAPSSGGSVP 160
T+P+A + SSA+P P P+ + VP
Sbjct: 403 QGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVP 435
Score = 28.1 bits (62), Expect = 4.8
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 128 VSVSATSPSATASASSASPPPP----PPAPSSGGSVPGQIINMPSLSP 171
++ S+ +P+ A +++ SP P PPAP G P MP SP
Sbjct: 414 MTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASP 461
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 28.4 bits (63), Expect = 3.4
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGGSVP 160
+ SP T + S+ + PP P+ ++
Sbjct: 214 TTASPETTPTPSTTTSPPSTTIPAPSTTIA 243
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 28.1 bits (63), Expect = 3.5
Identities = 20/102 (19%), Positives = 27/102 (26%), Gaps = 4/102 (3%)
Query: 78 CEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSA--TSP 135
+ + +EE V +D A S + P
Sbjct: 141 ALKEGEDPNPGPPLDEE--DEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFP 198
Query: 136 SATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGT 177
S SS S PPAPSS S +P+ G
Sbjct: 199 SPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGP 240
>gnl|CDD|220954 pfam11040, DGF-1_C, Dispersed gene family protein 1 of Trypanosoma
cruzi C-terminus. This protein is likely to be highly
expressed, and is expressed from the sub-telomeric
region. However, the function is not known. This is the
very C-terminal part of the protein.
Length = 87
Score = 26.7 bits (59), Expect = 4.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 131 SATSPSATASASSASPPPPPPAPSSG 156
S++ S T ASS PP PP P +G
Sbjct: 41 SSSYASGTTVASSYRPPAPPLQPMAG 66
>gnl|CDD|217461 pfam03261, CDK5_activator, Cyclin-dependent kinase 5 activator
protein.
Length = 314
Score = 27.9 bits (62), Expect = 4.3
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 129 SVSATSPSATASASSASPPPPPPAPSSGGSVPGQI 163
A PS + ++ P APS + G
Sbjct: 122 QPPAPPPSVLSGKNANCIPSQKNAPSIAITSTGGS 156
Score = 27.2 bits (60), Expect = 8.4
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 120 EEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSG--GSVPGQIINMPSLSPTMTEGT 177
+ + ++S + S+ S PP PPP+ SG + N PS++ T T G+
Sbjct: 97 KSVPRPSDTTLSCANLSSLREPSPGQPPAPPPSVLSGKNANCIPSQKNAPSIAITSTGGS 156
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 28.1 bits (62), Expect = 4.5
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 130 VSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLS 170
S P+ S + P P +S GS P S
Sbjct: 458 TSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGG 498
>gnl|CDD|238554 cd01134, V_A-ATPase_A, V/A-type ATP synthase catalytic subunit A.
These ATPases couple ATP hydrolysis to the build up of a
H+ gradient, but V-type ATPases do not catalyze the
reverse reaction. The Vacuolar (V-type) ATPase is found
in the membranes of vacuoles, the golgi apparatus and in
other coated vesicles in eukaryotes. Archaea have a
protein which is similar in sequence to V-ATPases, but
functions like an F-ATPase (called A-ATPase). A similar
protein is also found in a few bacteria.
Length = 369
Score = 28.0 bits (63), Expect = 4.6
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 14/46 (30%)
Query: 62 KW----LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
KW L K GD V GD+L + E I KI+VP
Sbjct: 48 KWDFKPLVKVGDHVTGGDILGTVP----------ENSLIEHKIMVP 83
>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional.
Length = 694
Score = 27.9 bits (62), Expect = 4.7
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 13/105 (12%)
Query: 60 IVKWL----KKEGDAVAPGDVLCEI--QTDKAVMSFETEEEGILAKILVPENTTDVKVGT 113
+V WL +EGD +AP V + D ++ E + D
Sbjct: 312 VVPWLPDTEGREGDDLAPTAVCTDAGLLPDTPLLPDAPEGSSDPVVPVAAATPVD----- 366
Query: 114 LIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGS 158
A + + S++ S + A A A G +
Sbjct: 367 --ASLPDVRTGTAPTSLANVSHADPAVAQPTQAATLAGAAPKGAT 409
>gnl|CDD|236754 PRK10760, PRK10760, murein hydrolase B; Provisional.
Length = 359
Score = 27.8 bits (62), Expect = 4.7
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 140 SASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEG 176
+A S S P P ++ G+ G + P + G
Sbjct: 17 AACS-SKPKPTETATTTGTPSGGFLLEPQHNVMQMGG 52
>gnl|CDD|215562 PLN03078, PLN03078, Putative tRNA pseudouridine synthase;
Provisional.
Length = 513
Score = 27.9 bits (62), Expect = 4.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 127 NVSVSATSPSATASASSASPPPPPPAPS 154
N + TS SA++S SS S PP P
Sbjct: 25 NPRILRTSSSASSSPSSTSLSPPSSDPP 52
>gnl|CDD|240872 cd12426, RRM4_PTBPH3, RNA recognition motif 4 in plant
polypyrimidine tract-binding protein homolog 3 (PTBPH3).
This subfamily corresponds to the RRM4 of PTBPH3.
Although its biological roles remain unclear, PTBPH3
shows significant sequence similarity to polypyrimidine
tract binding protein (PTB) that is an important
negative regulator of alternative splicing in mammalian
cells and also functions at several other aspects of
mRNA metabolism, including mRNA localization,
stabilization, polyadenylation, and translation. Like
PTB, PTBPH3 contains four RNA recognition motifs (RRM),
also known as RBD (RNA binding domain) or RNP
(ribonucleoprotein domain). .
Length = 79
Score = 26.3 bits (58), Expect = 4.9
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 160 PGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEE 212
P ++I++ +L +TE ++ L + G +V V +A++ F TEE+
Sbjct: 6 PTKMIHVSNLPSDVTEEDVINHLAEHG-VIVNVKVFESNGKKQALVEFATEEQ 57
>gnl|CDD|184930 PRK14966, PRK14966, unknown domain/N5-glutamine
S-adenosyl-L-methionine-dependent methyltransferase
fusion protein; Provisional.
Length = 423
Score = 27.7 bits (61), Expect = 5.0
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 100 ILVPENTTDVKVGTLIAVMVEEGEDWQ--------NVSVSATSPSATASASSASPP 147
+L+P T+ V ++A + E G W V+V+ P A AS SPP
Sbjct: 231 VLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPP 286
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 27.7 bits (62), Expect = 5.2
Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 7/98 (7%)
Query: 75 DVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATS 134
D++ + + + E V +V + V+E E
Sbjct: 143 DIIYD-GIFEDRTRESQDMEENDEVDEVEVE--EVPDDYGANLAVDEPEQSTMSRPQEVK 199
Query: 135 PSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPT 172
S A + +P P P+ SS S S
Sbjct: 200 QSVPAQQAPPNPQQPMPSASS----ESATSKSASTSRE 233
>gnl|CDD|235309 PRK04596, minC, septum formation inhibitor; Reviewed.
Length = 248
Score = 27.6 bits (61), Expect = 5.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 138 TASASSASPPPPPPA 152
A+ S PPPPPPA
Sbjct: 114 RAAVSPPPPPPPPPA 128
>gnl|CDD|236394 PRK09169, PRK09169, hypothetical protein; Validated.
Length = 2316
Score = 27.8 bits (62), Expect = 5.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 119 VEEGEDWQNVSVSATSPSATASASSASPPPPPPAP 153
EE +DW+ S P A A+A+ A+ P PA
Sbjct: 2067 CEEIDDWEAEPPSTARPRAPAAAAPAAGAPRSPAL 2101
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 26.7 bits (59), Expect = 5.6
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 86 VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSAS 145
++S E E ILA + P V T A + + P A A+A A
Sbjct: 68 ILSMEQEARKILAPLTPPAPPEPVTPPT--AQSPAPAVPTPPPTSTPAVPPAPAAAVPAP 125
Query: 146 PPPPPPAPSS 155
PPP+
Sbjct: 126 AAAPPPSDPP 135
>gnl|CDD|140324 PTZ00303, PTZ00303, phosphatidylinositol kinase; Provisional.
Length = 1374
Score = 27.7 bits (61), Expect = 5.9
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 16/70 (22%)
Query: 125 WQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVK-WLK 183
W+ ++ + + +A +A ++SPP P P +P LS +TEG +V WL
Sbjct: 743 WKRLAEANQATAAVFAARTSSPPTTAPLP------------LPMLS-DVTEGQVVTVWLL 789
Query: 184 K--EGDAVVP 191
DA+VP
Sbjct: 790 DMLHKDALVP 799
>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 420
Score = 27.6 bits (61), Expect = 6.0
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 82 TDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASA 141
T V+ EE G A IL ++ +V I +M G+D +++ S T AT
Sbjct: 10 TSHEVLRKVKEELGPDAVIL-----SNKQVPGGIEIMALAGKDISSLT-SDTPEEATIPE 63
Query: 142 SSASPPPPP-PAPSSGGSVPGQIINMPSLSPTMTE 175
++ P PP P+SG P I P+ P +
Sbjct: 64 TTVKPTAPPRQKPASGQPQPPAIHKQPATQPPAAD 98
>gnl|CDD|131605 TIGR02554, PrgH, type III secretion system protein PrgH/EprH. In
Samonella, this gene is part of a four-gene operon
PrgHIJK and in general is found in type III secretion
operons. PrgH has been shown to be required for
secretion , as well as being a structural component of
the needle complex [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 389
Score = 27.6 bits (61), Expect = 6.2
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 72 APGDVLCEIQTDKAVMSFETEE--EGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVS 129
G V E++ D A FE + NT +VG L + + E W
Sbjct: 57 RAGGVNFELRFDAASGDFELDFLSADGCESQRAAFNTP-CRVGDLAFALRPQREPWSEEV 115
Query: 130 VSATSPSATASASSASPPPP 149
+ + + +A +A P P
Sbjct: 116 MHYAEHAPSRAAPAAEPGAP 135
>gnl|CDD|221321 pfam11928, DUF3446, Domain of unknown function (DUF3446). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 80 to 99 amino acids in length. This domain is
found associated with pfam00096. This domain has a
single completely conserved residue P that may be
functionally important.
Length = 84
Score = 26.0 bits (57), Expect = 6.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 128 VSVSATSPSATASASSASPPPPPPAPSSGGSVPGQ 162
V +S PS++ S+SS+S +P SV
Sbjct: 28 VGMSNPPPSSSPSSSSSSSSSSSQSPPLSCSVHQS 62
Score = 25.6 bits (56), Expect = 9.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 126 QNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQI 163
+ ++SPS+++S+SS+S PP + S S P I
Sbjct: 30 MSNPPPSSSPSSSSSSSSSSSQSPPLSCSVHQSEPSPI 67
>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 27.5 bits (61), Expect = 6.8
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 17/83 (20%)
Query: 134 SPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGD 193
+ +A+A A + P P PA + I P+ P GD
Sbjct: 50 AVAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVP---------------APGAIGD 94
Query: 194 VLCEIQTDKAVMSFETEEEGILA 216
+ E+Q+ + E + G+L
Sbjct: 95 LRGELQSMRG--MLERQLAGLLW 115
>gnl|CDD|226775 COG4325, COG4325, Predicted membrane protein [Function unknown].
Length = 464
Score = 27.1 bits (60), Expect = 7.2
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 135 PSATASASSASPPPPPPAPS------SGGSVPGQIINMPSLSPTMTEGTIVKWL-KKEGD 187
P + + PP PPA + G + Q I++ L+ L + GD
Sbjct: 210 PESDDADGQVETPPSPPADAVPIRAPHSGYL--QTIDVDDLAKKAAASRYTIHLVTRVGD 267
Query: 188 AVVPGDVLCEIQTDKAVMSFET 209
VV G +L + S
Sbjct: 268 FVVAGGLLGWCWRRGTLPSDFP 289
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 27.2 bits (60), Expect = 7.3
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 139 ASASSASPPPPPPAPSSGGSVPG 161
+A+SA PPP P GG G
Sbjct: 70 TTAASAGWQGPPPGPPGGGDFSG 92
>gnl|CDD|221598 pfam12484, PE_PPE_C, Polymorphic PE/PPE proteins C terminal. This
domain family is found in bacteria, and is approximately
90 amino acids in length. The family is found in
association with pfam00823. There is a conserved SVP
sequence motif. There is a single completely conserved
residue W that may be functionally important. The
proteins in this family are PE/PPE proteins implicated
in immunostimulation and virulence.
Length = 81
Score = 25.8 bits (57), Expect = 7.4
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 125 WQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPG 161
W + + ++ +A + + A + +PG
Sbjct: 20 WAAAAPAVSAAAAALPGAGVAAAAEAAAGAVLPGMPG 56
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 27.1 bits (60), Expect = 8.1
Identities = 14/60 (23%), Positives = 24/60 (40%)
Query: 143 SASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDK 202
PPPPPP P P + T+ + + +A +P ++L +QT +
Sbjct: 272 QPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEELMFDAVEADLPDNILATLQTVQ 331
>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional.
Length = 574
Score = 27.3 bits (60), Expect = 8.2
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 151 PAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGD-AVVPGDVLCEIQTDKAVMS 206
PAP + G II M +SPT +V L+K+G ++ D + E+Q+ + VM+
Sbjct: 55 PAPGNPGVAYNTII-MIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQSGQKVMA 110
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 26.9 bits (60), Expect = 8.3
Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 1/67 (1%)
Query: 107 TDVKVG-TLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIIN 165
DV + L+ + + + SS S P PP S S
Sbjct: 278 LDVSLSVVLLNADSSVEANGVEPEPTGSVSDRPRHLSSDSSPSPPDTSDSDPSTETPPPA 337
Query: 166 MPSLSPT 172
S SP
Sbjct: 338 SLSHSPP 344
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 27.1 bits (60), Expect = 8.3
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 132 ATSPSATASASSASPPPPPPAPSSGGSVPGQ 162
A S+ ++ +A P P PP Q
Sbjct: 723 APCGSSLIASPTAPPEPEPPGAEQADGAENQ 753
>gnl|CDD|236658 PRK10153, PRK10153, DNA-binding transcriptional activator CadC;
Provisional.
Length = 517
Score = 27.3 bits (61), Expect = 8.3
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKW 181
S+ P A ++A P A + + P+ S T T W
Sbjct: 118 SSPPPIPEAVPATAEPSESANAQFPAPPLTRAVCQSPAKSKRFT--TFWVW 166
>gnl|CDD|234404 TIGR03931, T7SS_Rv3446c, type VII secretion-associated protein,
Rv3446c family, C-terminal domain. Members of this
protein family occur as part of the ESX-4 cluster of
type VII secretion system (T7SS) proteins in
Mycobacterium tuberculosis and in similar T7SS clusters
in other Actinobacteria genera, including
Corynebacterium, Nocardia, Rhodococcus, and
Saccharopolyspora. This model describes the
better-conserved C-terminal region [Protein fate,
Protein and peptide secretion and trafficking].
Length = 172
Score = 26.7 bits (59), Expect = 8.5
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 126 QNVSVSATSPSATASASSAS--PPPPPPAPSSGGSVPGQI 163
+ + S+TA A++ S P PPPP P V G++
Sbjct: 6 GDTPKAKVRESSTAQATAESTTPAPPPPRPGVTRLVEGRV 45
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 26.8 bits (59), Expect = 9.1
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 129 SVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSP 171
S A + ATA+A A PPPPP ++ + P +P
Sbjct: 27 SAVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAP 69
>gnl|CDD|180550 PRK06382, PRK06382, threonine dehydratase; Provisional.
Length = 406
Score = 26.8 bits (59), Expect = 9.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 95 GILAKILVPENTTDVKVGTLIA 116
GI AKI++PE T KV + A
Sbjct: 96 GIDAKIVMPEYTIPQKVNAVEA 117
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 27.0 bits (60), Expect = 10.0
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 2/65 (3%)
Query: 109 VKVGTLIAVM--VEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINM 166
V L+ + +E G + A +A + PP P + +
Sbjct: 365 APVSELLDRLEALERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPA 424
Query: 167 PSLSP 171
P+
Sbjct: 425 PAPPA 429
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.128 0.361
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,909,914
Number of extensions: 992280
Number of successful extensions: 3161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2688
Number of HSP's successfully gapped: 309
Length of query: 219
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 126
Effective length of database: 6,812,680
Effective search space: 858397680
Effective search space used: 858397680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (25.6 bits)