RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10439
(219 letters)
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid
dehydrogenase; NMR {Homo sapiens}
Length = 108
Score = 152 bits (387), Expect = 3e-48
Identities = 46/101 (45%), Positives = 64/101 (63%)
Query: 44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
Q++ +PSLSPTM GTI +W KKEGD + GD++ E++TDKA + FE+ EE +AKILV
Sbjct: 8 QKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVA 67
Query: 104 ENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSA 144
E T DV +G +I + V + ED + SA + SS
Sbjct: 68 EGTRDVPIGAIICITVGKPEDIEAFKNYTLDSSAASGPSSG 108
Score = 110 bits (276), Expect = 2e-31
Identities = 33/60 (55%), Positives = 44/60 (73%)
Query: 160 PGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
GQ + +PSLSPTM GTI +W KKEGD + GD++ E++TDKA + FE+ EE +AKIL
Sbjct: 6 SGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKIL 65
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate
dehydrogenase complex; pyruvate dehydrogenase kinase 3,
lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo
sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C*
2q8i_B* 1fyc_A
Length = 128
Score = 152 bits (386), Expect = 8e-48
Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 5/116 (4%)
Query: 34 LHTTNILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEE 93
+ ++ +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +E
Sbjct: 18 YFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQE 77
Query: 94 EGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPP 149
EG LAKILVPE T DV +GT + ++VE+ D +SA + + P P
Sbjct: 78 EGYLAKILVPEGTRDVPLGTPLCIIVEKEAD-----ISAFADYRPTEVTDLKPQVP 128
Score = 113 bits (285), Expect = 1e-32
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 136 SATASASSASPPPPPPAPSSGGSVP-GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDV 194
+ G S P + +P+LSPTMT GT+ +W KK G+ + GD+
Sbjct: 1 GGSHHHHHHGMARLENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDL 60
Query: 195 LCEIQTDKAVMSFETEEEGILAKIL 219
L EI+TDKA + FE +EEG LAKIL
Sbjct: 61 LAEIETDKATIGFEVQEEGYLAKIL 85
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl
domain, 2-oxoacid dehydrogenase, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 151 bits (383), Expect = 1e-47
Identities = 53/90 (58%), Positives = 75/90 (83%)
Query: 44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
+I MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ + ++GILAKI+V
Sbjct: 8 IKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVE 67
Query: 104 ENTTDVKVGTLIAVMVEEGEDWQNVSVSAT 133
E + ++++G+LI ++VEEGEDW++VS ++
Sbjct: 68 EGSKNIRLGSLIGLIVEEGEDWKHVSGPSS 97
Score = 111 bits (280), Expect = 4e-32
Identities = 40/60 (66%), Positives = 48/60 (80%)
Query: 160 PGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
G I MPSLSPTM EG IVKWLKKEG+AV GD LCEI+TDKAV++ + ++GILAKI+
Sbjct: 6 SGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIV 65
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 152 bits (385), Expect = 2e-46
Identities = 56/118 (47%), Positives = 79/118 (66%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
+I MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ + ++GILAKI+V E
Sbjct: 5 KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEE 64
Query: 105 NTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQ 162
+ ++++G+LI ++VEEGEDW++V + + + P P P S
Sbjct: 65 GSKNIRLGSLIGLIVEEGEDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEH 122
Score = 103 bits (259), Expect = 1e-27
Identities = 39/56 (69%), Positives = 47/56 (83%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
I MPSLSPTM EG IVKWLKKEG+AV GD LCEI+TDKAV++ + ++GILAKI+
Sbjct: 6 ILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIV 61
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate
dehydrogenase complex,...; pyruvate dehydrogenase kinase
isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo
sapiens} PDB: 3crl_C*
Length = 87
Score = 133 bits (337), Expect = 7e-41
Identities = 42/85 (49%), Positives = 60/85 (70%)
Query: 40 LDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAK 99
++ +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TD A + FE +EEG LAK
Sbjct: 2 YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAK 61
Query: 100 ILVPENTTDVKVGTLIAVMVEEGED 124
ILVPE T DV +GT + ++VE+ D
Sbjct: 62 ILVPEGTRDVPLGTPLCIIVEKEAD 86
Score = 99.8 bits (249), Expect = 1e-27
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 160 PGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
P + +P+LSPTMT GT+ +W KK G+ + GD+L EI+TD A + FE +EEG LAKIL
Sbjct: 4 PHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKIL 63
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 102 bits (257), Expect = 7e-26
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 1/127 (0%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
E K+P + + EG IVKW K GD V DVLCE+Q DKAV+ + +G + +ILVPE
Sbjct: 4 EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 63
Query: 105 NTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQII 164
T VG + + G + + + + + +
Sbjct: 64 GTV-ATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAE 122
Query: 165 NMPSLSP 171
P+
Sbjct: 123 AGPNRRV 129
Score = 65.3 bits (160), Expect = 9e-13
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+P + + EG IVKW K GD V DVLCE+Q DKAV+ + +G + +IL
Sbjct: 5 FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 60
Score = 29.5 bits (67), Expect = 0.75
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKA 203
G +++ L EG G L +
Sbjct: 54 GKVLEILVPEGTVATVGQTLITLDAPGY 81
Score = 27.6 bits (62), Expect = 3.6
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 123 EDWQNVSVSATSPSATASASSASPPPPPPAPSSGG 157
ED P+ A+ A+P PA + G
Sbjct: 161 EDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTEGE 195
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of
2-oxoglutarate dehydrogenase...; glycolysis,
acyltransferase, lipoyl; NMR {Azotobacter vinelandii}
SCOP: b.84.1.1 PDB: 1ghk_A
Length = 79
Score = 78.8 bits (195), Expect = 1e-19
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
+IK P+ ++ +GT+ W KK G+AV +++ +I+TDK VM E +G++A+I+ E
Sbjct: 3 DIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE 62
Query: 105 NTTDVKVGTLIAVMVEEG 122
T V G L+ + E G
Sbjct: 63 GDT-VLSGELLGKLTEGG 79
Score = 59.6 bits (145), Expect = 2e-12
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
I P+ ++ +GT+ W KK G+AV +++ +I+TDK VM E +G++A+I+
Sbjct: 4 IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIV 59
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase,
lipoyl domain, complex, glycolysis; NMR {Escherichia
coli} SCOP: b.84.1.1
Length = 80
Score = 76.5 bits (189), Expect = 8e-19
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
+I +P L ++ + T+ W KK GDAV +VL EI+TDK V+ +GIL +L E
Sbjct: 4 DILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDE 63
Query: 105 NTTDVKVGTLIAVMVEEG 122
TT V ++ + EG
Sbjct: 64 GTT-VTSRQILGR-LREG 79
Score = 59.2 bits (144), Expect = 3e-12
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
I +P L ++ + T+ W KK GDAVV +VL EI+TDK V+ +GIL +L
Sbjct: 5 ILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVL 60
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl
acid bearing, human BCKD, experimental DATA, average
structure, transferase; NMR {Homo sapiens} SCOP:
b.84.1.1 PDB: 1k8o_A
Length = 93
Score = 76.2 bits (188), Expect = 1e-18
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
+ K+ + + E T+ +W KEGD V+ D +CE+Q+DKA ++ + +G++ K+
Sbjct: 5 VQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYN 64
Query: 104 ENTTDVKVGTLIAVMVEEGED 124
+ VG + + E
Sbjct: 65 LDDI-AYVGKPLVDIETEALK 84
Score = 58.5 bits (142), Expect = 7e-12
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+ + + E T+ +W KEGD V D +CE+Q+DKA ++ + +G++ K+
Sbjct: 7 FKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLY 62
Score = 31.1 bits (71), Expect = 0.063
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 53 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEE 94
+ +G I K D G L +I+T+
Sbjct: 51 TSRYDGVIKKLYYNLDDIAYVGKPLVDIETEALKDLEHHHHH 92
Score = 30.0 bits (68), Expect = 0.15
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 171 PTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEE 212
+ +G I K D G L +I+T+
Sbjct: 51 TSRYDGVIKKLYYNLDDIAYVGKPLVDIETEALKDLEHHHHH 92
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma
acidophilum}
Length = 77
Score = 73.8 bits (182), Expect = 1e-17
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
E K+P + +TEG IV+W KEGD V L E+ TDK + + G + KIL E
Sbjct: 3 EFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYRE 62
Query: 105 NTTDVKVGTLIAVM 118
V VG+ + +
Sbjct: 63 GQV-VPVGSTLLQI 75
Score = 58.8 bits (143), Expect = 5e-12
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+P + +TEG IV+W KEGD V L E+ TDK + + G + KIL
Sbjct: 4 FKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKIL 59
Score = 29.1 bits (66), Expect = 0.26
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 53 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQT 82
P+ G IVK L +EG V G L +I T
Sbjct: 48 PSPVRGKIVKILYREGQVVPVGSTLLQIDT 77
Score = 28.0 bits (63), Expect = 0.73
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 171 PTMTEGTIVKWLKKEGDAVVPGDVLCEIQT 200
P+ G IVK L +EG V G L +I T
Sbjct: 48 PSPVRGKIVKILYREGQVVPVGSTLLQIDT 77
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA,
biotinylation, alternative splicing, ATP-binding,
biotin, fatty acid biosynthesis, ligase; NMR {Homo
sapiens}
Length = 84
Score = 48.5 bits (116), Expect = 3e-08
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
G + ++ ++G V G E++ K +M+ +E G + I P ++ G ++A
Sbjct: 14 GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRPGAV--LEAGCVVAR 71
Query: 118 M 118
+
Sbjct: 72 L 72
Score = 41.9 bits (99), Expect = 7e-06
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218
G + ++ ++G V G E++ K +M+ +E G + I
Sbjct: 14 GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI 56
Score = 34.2 bits (79), Expect = 0.004
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 60 IVKWLKKEGDAVAPGDVLCEIQTD 83
VK++K+ G + G V+ ++ D
Sbjct: 52 RVKYIKRPGAVLEAGCVVARLELD 75
Score = 32.7 bits (75), Expect = 0.013
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 178 IVKWLKKEGDAVVPGDVLCEIQTD 201
VK++K+ G + G V+ ++ D
Sbjct: 52 RVKYIKRPGAVLEAGCVVARLELD 75
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 48.2 bits (115), Expect = 6e-08
Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
G + ++ ++G V G E++ K +M+ +E G + K + ++ G ++A
Sbjct: 26 GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAV-LEAGCVVAR 83
Query: 118 M 118
+
Sbjct: 84 L 84
Score = 42.0 bits (99), Expect = 1e-05
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 165 NMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGIL 215
N P++ + + G + ++ ++G V G E++ K +M+ +E G +
Sbjct: 15 NDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV 65
Score = 33.6 bits (77), Expect = 0.010
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 48 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTD 83
M E VK++K+ G + G V+ ++ D
Sbjct: 55 MTLNVQ---ERGRVKYIKRPGAVLEAGCVVARLELD 87
Score = 33.6 bits (77), Expect = 0.012
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 28/90 (31%)
Query: 112 GTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSP 171
G L VE+G V A S A G
Sbjct: 26 GKLTQYTVEDGG-----HVEAGSSYAEMEVMKMI--MTLNVQERG--------------- 63
Query: 172 TMTEGTIVKWLKKEGDAVVPGDVLCEIQTD 201
VK++K+ G + G V+ ++ D
Sbjct: 64 ------RVKYIKRPGAVLEAGCVVARLELD 87
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 3e-05
Identities = 40/246 (16%), Positives = 66/246 (26%), Gaps = 98/246 (39%)
Query: 5 VRSRLTKLASKFINPTYNN---------------AFLNKSKIICLHTTNILDAQQEIKMP 49
+++ L +L + Y N AF KI L TT Q
Sbjct: 230 IQAELRRL---LKSKPYENCLLVLLNVQNAKAWNAFNLSCKI--LLTTR--FKQ------ 276
Query: 50 SLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEE-EGILAKIL------V 102
+ D ++ I D M+ +E + +L K L +
Sbjct: 277 ----------VT-------DFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 103 PENTTDVK--VGTLIAVMVEEGED-WQNVSVSATSPSATASASSASPPPPPPAPSSGGSV 159
P ++IA + +G W N T SS
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS---------------- 362
Query: 160 PGQIINMPSLSPTMTEGTIVKWLKK--------EGDAVVPGDVLCEIQTDKAVMSFETEE 211
+N L P E +K A +P +L I D +++
Sbjct: 363 ----LN--VLEP--AE------YRKMFDRLSVFPPSAHIPTILLSLIWFDVI----KSDV 404
Query: 212 EGILAK 217
++ K
Sbjct: 405 MVVVNK 410
Score = 31.0 bits (69), Expect = 0.30
Identities = 46/280 (16%), Positives = 76/280 (27%), Gaps = 102/280 (36%)
Query: 4 LVRSRLTKLASKFI----NPTYNNAFLNKSKIICLHTTNILDAQQEIKMPSLSPTMTEGT 59
+ S+ ++ KF+ Y FL S I + E + PS+ M
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYK--FL-MSPI-----------KTEQRQPSMMTRMYIEQ 115
Query: 60 IVKWLKKEGDAVAPGDV------------LCEIQTDKAV----MSFETEEEGILAK-ILV 102
+ L + A +V L E++ K V + G K +
Sbjct: 116 RDR-LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL------GS-GKTWVA 167
Query: 103 PENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSAT---------------ASASSASPP 147
+ KV + + W N+ + SP S S S
Sbjct: 168 LDVCLSYKVQCKMDFKIF----WLNLK-NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 148 PPPPAPSSGGSVPGQIINMP---SLSPTMTEGTIVK---WLKKEGDAVVPGDVLCEI--Q 199
S + + + P L +V K +A ++ C+I
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCL--------LVLLNVQNAKAWNAF---NLSCKILLT 271
Query: 200 T-DKAVMSF-------------------ETEEEGILAKIL 219
T K V F E + +L K L
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 42.7 bits (101), Expect = 6e-05
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
G K + GD V GD + I+ K M + G + KIL V+ G L+AV
Sbjct: 1176 GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDM-VEAGDLVAV 1234
Query: 118 MV 119
+V
Sbjct: 1235 IV 1236
Score = 33.4 bits (77), Expect = 0.053
Identities = 17/85 (20%), Positives = 23/85 (27%), Gaps = 8/85 (9%)
Query: 135 PSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDV 194
A A + P G K + GD V GD
Sbjct: 1143 QVANAELKKSGDDKPQDVEEYPDDAELLYSEYT--------GRFWKPVAAVGDHVEAGDG 1194
Query: 195 LCEIQTDKAVMSFETEEEGILAKIL 219
+ I+ K M + G + KIL
Sbjct: 1195 VIIIEAMKTEMVVGATKSGKVYKIL 1219
Score = 30.0 bits (68), Expect = 0.68
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 57 EGTIVKWLKKEGDAVAPGDVLCEI 80
G + K L K GD V GD++ I
Sbjct: 1212 SGKVYKILHKNGDMVEAGDLVAVI 1235
Score = 28.4 bits (64), Expect = 2.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 175 EGTIVKWLKKEGDAVVPGDVLCEI 198
G + K L K GD V GD++ I
Sbjct: 1212 SGKVYKILHKNGDMVEAGDLVAVI 1235
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; misfolded dimer, acyltransferase,
glycolysis; NMR {Escherichia coli}
Length = 85
Score = 38.5 bits (90), Expect = 1e-04
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
+E+ +P + + + + K GD VA L ++ DKA M G++ ++ V
Sbjct: 3 KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVN 56
Query: 104 ENTTDVKVGTLIAVMVEEGE 123
VK G+LI + EG
Sbjct: 57 VGDK-VKTGSLIMIFEVEGA 75
Score = 29.2 bits (66), Expect = 0.23
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218
+ + + K GD V L ++ DKA M G++ ++
Sbjct: 11 VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKEL 53
Score = 26.1 bits (58), Expect = 3.0
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 53 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEE 94
P G + + GD V G ++ + + A + ++
Sbjct: 43 PAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGAAPAAAPAKQ 84
Score = 25.0 bits (55), Expect = 8.1
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 171 PTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEE 212
P G + + GD V G ++ + + A + ++
Sbjct: 43 PAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGAAPAAAPAKQ 84
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 40.4 bits (95), Expect = 3e-04
Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
G++ + G+ V L + K + + +G++ ++ V T + G L+
Sbjct: 1086 GSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDT-IATGDLLIE 1144
Query: 118 MVEEGE 123
+ + +
Sbjct: 1145 IEKATD 1150
Score = 27.7 bits (62), Expect = 4.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQ 199
G I + GD + GD+L EI+
Sbjct: 1123 GVIKQVTVNNGDTIATGDLLIEIE 1146
Score = 27.3 bits (61), Expect = 4.6
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 9/42 (21%)
Query: 158 SVPGQII-NMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEI 198
S P I MP G++ + G+ V L
Sbjct: 1075 SNPSHIGAQMP--------GSVTEVKVSVGETVKANQPLLIT 1108
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 39.6 bits (93), Expect = 4e-04
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
G ++ G VA G LC + K + EG + K+ V ++ T ++ LI
Sbjct: 658 GKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMT-LEGDDLILE 716
Query: 118 M 118
+
Sbjct: 717 I 717
Score = 34.2 bits (79), Expect = 0.030
Identities = 15/81 (18%), Positives = 22/81 (27%), Gaps = 11/81 (13%)
Query: 139 ASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEI 198
A P G + MP G ++ G V G LC +
Sbjct: 632 TQAMKEMHFHPKALKDVKGQIGA---PMP--------GKVIDIKVVAGAKVAKGQPLCVL 680
Query: 199 QTDKAVMSFETEEEGILAKIL 219
K + EG + K+
Sbjct: 681 SAMKMETVVTSPMEGTVRKVH 701
Score = 32.3 bits (74), Expect = 0.13
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQ 81
GT+ K + + D++ EI+
Sbjct: 695 GTVRKVHVTKDMTLEGDDLILEIE 718
Score = 30.7 bits (70), Expect = 0.35
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQ 199
GT+ K + + D++ EI+
Sbjct: 695 GTVRKVHVTKDMTLEGDDLILEIE 718
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic
protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A
2b8f_A 2b8g_A*
Length = 72
Score = 36.0 bits (84), Expect = 9e-04
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
G + K K GD + G + +++ K + + GI+ ++ E V G ++
Sbjct: 8 GNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDF-VNEGDVLLE 66
Query: 118 MVEEGE 123
+ +
Sbjct: 67 LSNSTQ 72
Score = 29.9 bits (68), Expect = 0.13
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTDK 202
G + + KKEGD V GDVL E+
Sbjct: 45 GIVKEVKKKEGDFVNEGDVLLELSNST 71
Score = 27.9 bits (63), Expect = 0.58
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 176 GTIVKWLKKEGDAVVPGDVLC 196
G + K K GD + G +
Sbjct: 8 GNLWKVHVKAGDQIEKGQEVA 28
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.001
Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 74/231 (32%)
Query: 19 PTYNNAFLNKSKIICLHTTNILD----AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPG 74
+ + + +L Q P+L T+ E + LK +G + P
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFTQ-----PAL--TLMEKAAFEDLKSKG--LIPA 1755
Query: 75 DV------------LCEIQTDKA-VMSFET-----EEEGILAKILVPENTTDVKVGTLIA 116
D L + A VMS E+ G+ ++ VP + +IA
Sbjct: 1756 DATFAGHSLGEYAALASL----ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 117 VMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSV-------PG-QII---N 165
+ V+ S + + +G V Q + +
Sbjct: 1812 INPGR------VAASFSQEALQYVVERV-------GKRTGWLVEIVNYNVENQQYVAAGD 1858
Query: 166 MPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEE-EGIL 215
+ +L T+T ++ ++K + I + S EE EG L
Sbjct: 1859 LRALD-TVTN--VLNFIKLQK-----------IDIIELQKSLSLEEVEGHL 1895
Score = 31.9 bits (72), Expect = 0.15
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 31/88 (35%)
Query: 60 IVKWLKKEGDAVAPG-DVLCEIQTDKAVMSFETEEEGI----LAKILV--------PEN- 105
I++WL+ + P D L I + S I LA +V P
Sbjct: 215 ILEWLENPSNT--PDKDYLLSI----PI-SCP----LIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 106 ------TTDVKVGTLIAVMVEEGEDWQN 127
T G + AV + E + W++
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWES 291
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 38.4 bits (89), Expect = 0.002
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 119 VEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTI 178
+E+ + + S+ + A+ ++ + P PAP+ + P + ++ T +
Sbjct: 95 IEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATDVIRAL 154
Query: 179 V-KWLKKEGDAVVPGD 193
V + LKKE + P
Sbjct: 155 VAQKLKKELTEIPPSK 170
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain,
dihydrolipoyl dehydrogenase, multienzyme complex,
post-translational modification; NMR {Neisseria
meningitidis} SCOP: b.84.1.1
Length = 81
Score = 34.9 bits (81), Expect = 0.002
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 101
A E+K+P + I+ GD +A D L ++TDKA M E G++ ++
Sbjct: 1 ALVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVK 59
Query: 102 VPENTTDVKVGTLIAVMVEEGE 123
V + G LI V+ EG
Sbjct: 60 VKVGDK-ISEGGLIVVVEAEGT 80
Score = 26.4 bits (59), Expect = 2.2
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 178 IVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
I+ GD + D L ++TDKA M E G++ ++
Sbjct: 18 IIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVK 59
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 37.3 bits (87), Expect = 0.003
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
G I + G AV GDVL I+ K + E++G +A++LV + L+AV
Sbjct: 1104 GVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQ-IDAKDLLAV 1162
Query: 118 M 118
Sbjct: 1163 Y 1163
Score = 27.3 bits (61), Expect = 5.1
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 158 SVPGQII-NMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILA 216
+ MP G I + G AV GDVL I+ K + E++G +A
Sbjct: 1093 GNAAHVGAPMP--------GVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIA 1144
Query: 217 KIL 219
++L
Sbjct: 1145 EVL 1147
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.50A {Thermotoga
maritima} SCOP: c.1.17.1 d.41.2.1
Length = 285
Score = 36.3 bits (85), Expect = 0.004
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQ 81
K+ ++G+ + V+ EI+
Sbjct: 73 SKFNVEDGEYLEGTGVIGEIE 93
Score = 35.6 bits (83), Expect = 0.007
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQ 199
K+ ++G+ + V+ EI+
Sbjct: 73 SKFNVEDGEYLEGTGVIGEIE 93
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate
dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Length = 80
Score = 33.8 bits (78), Expect = 0.006
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
+E+ +P + E + + + K GD VA L ++ DKA M G++ ++ V
Sbjct: 3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVN 60
Query: 104 ENTTDVKVGTLIAVMVEEGE 123
VK G+LI + EG
Sbjct: 61 VGDK-VKTGSLIMIFEVEGA 79
Score = 26.4 bits (59), Expect = 2.7
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
E + + + K GD V L ++ DKA M G++ ++
Sbjct: 14 EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELK 58
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin
carboxylase, carboxyltransferase, BT domain, BCCP DOM
ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Length = 675
Score = 36.1 bits (84), Expect = 0.007
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 15/77 (19%)
Query: 51 LSPTMTEGTIVKWLKKEGDAVAPGDVLCEI------QTDKAVMSFETEEEGILAKILVPE 104
+P M G+IV+ L + G V G L + + +A G++ + E
Sbjct: 606 SAP-MN-GSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRA------PHAGVVKALYCSE 657
Query: 105 NTTDVKVGTLIAVMVEE 121
V+ GT + + E
Sbjct: 658 GEL-VEEGTPLVELDEN 673
Score = 32.6 bits (75), Expect = 0.091
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 143 SASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLC 196
+ P + + G + +P M G+IV+ L + G V G L
Sbjct: 585 AIEAVDPIAEAEAAHAHQGGL-----SAP-MN-GSIVRVLVEPGQTVEAGATLV 631
Score = 28.4 bits (64), Expect = 2.4
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKA 85
G + EG+ V G L E+ ++A
Sbjct: 648 GVVKALYCSEGELVEEGTPLVELDENQA 675
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase,
transferase; 2.62A {Francisella tularensis subsp}
Length = 287
Score = 35.5 bits (83), Expect = 0.008
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQ 81
+ WL + V + E++
Sbjct: 77 ITWLYSDAQKVPANARIFELK 97
Score = 34.4 bits (80), Expect = 0.018
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQ 199
+ WL + V + E++
Sbjct: 77 ITWLYSDAQKVPANARIFELK 97
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate
phosphoribosyltransferase, quinolinic acid, HELI
pylori, transferase; HET: NTM; 2.30A {Helicobacter
pylori} PDB: 2b7p_A* 2b7q_A*
Length = 273
Score = 35.5 bits (83), Expect = 0.008
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQ 81
K+ + P D L EI+
Sbjct: 60 CVQTIKDKERFKPKDALMEIR 80
Score = 34.3 bits (80), Expect = 0.016
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQ 199
K+ + P D L EI+
Sbjct: 60 CVQTIKDKERFKPKDALMEIR 80
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate
dehydrogenase complex; glycolysis, acyltransferase,
lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB:
1iyv_A
Length = 79
Score = 33.3 bits (77), Expect = 0.009
Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
+ I++P + +G +++ L K GD + L +++ KA M + + G++ + V
Sbjct: 2 EIIRVPDIG---GDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVK 58
Query: 104 ENTTDVKVGTLIAVMVEEGE 123
+K G I +
Sbjct: 59 LGDK-LKEGDAIIELEPAAG 77
Score = 25.6 bits (57), Expect = 4.0
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 178 IVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+++ L K GD + L +++ KA M + + G++ +
Sbjct: 15 VIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVS 56
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI,
UW, emerald biostructures, ALS collaborative
crystallography; 2.05A {Ehrlichia chaffeensis}
Length = 300
Score = 35.2 bits (82), Expect = 0.010
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQ 81
+ KK+GD L +
Sbjct: 86 YEIHKKDGDITGKNSTLVSGE 106
Score = 34.0 bits (79), Expect = 0.022
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQ 199
+ KK+GD L +
Sbjct: 86 YEIHKKDGDITGKNSTLVSGE 106
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel,
pyridin dicarboxylate, 5-phospho-alpha-D-ribose
1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Length = 320
Score = 35.3 bits (82), Expect = 0.010
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQ 81
++W ++GD + P LC +
Sbjct: 110 IEWHVQDGDTLTPNQTLCTLT 130
Score = 34.1 bits (79), Expect = 0.021
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQ 199
++W ++GD + P LC +
Sbjct: 110 IEWHVQDGDTLTPNQTLCTLT 130
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 35.7 bits (82), Expect = 0.010
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 119 VEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTI 178
E + A +P+ ASA + + P P ++ + I + ++ +
Sbjct: 95 SELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASLLLHVL 154
Query: 179 V-KWLKKEGDAVVPGD 193
V LKK D++
Sbjct: 155 VAHKLKKSLDSIPMSK 170
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures,
ssgcid, niaid, SBRI, UWPPG, glycosyltransferase,
transferase, structural genomics; 2.25A {Burkholderia
pseudomallei}
Length = 298
Score = 34.8 bits (81), Expect = 0.013
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQ 81
V W +EGD ++ +CE++
Sbjct: 88 VDWRHREGDRMSADSTVCELR 108
Score = 34.0 bits (79), Expect = 0.026
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQ 199
V W +EGD + +CE++
Sbjct: 88 VDWRHREGDRMSADSTVCELR 108
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD
biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium}
SCOP: c.1.17.1 d.41.2.1
Length = 296
Score = 34.8 bits (81), Expect = 0.013
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQ 81
+ W +GDA+ + E+Q
Sbjct: 87 LTWHVDDGDAIHANQTVFELQ 107
Score = 34.1 bits (79), Expect = 0.027
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQ 199
+ W +GDA+ + E+Q
Sbjct: 87 LTWHVDDGDAIHANQTVFELQ 107
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism,
transferase, polymorphism, glycosyltransferase,
pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo
sapiens} PDB: 3lar_A
Length = 299
Score = 34.8 bits (81), Expect = 0.013
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQ 81
V W EG + P + E++
Sbjct: 73 VSWFLPEGSKLVPVARVAEVR 93
Score = 34.1 bits (79), Expect = 0.023
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQ 199
V W EG +VP + E++
Sbjct: 73 VSWFLPEGSKLVPVARVAEVR 93
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural
genomics, NPPSFA, national project O structural and
functional analyses; 1.90A {Thermus thermophilus}
Length = 286
Score = 34.8 bits (81), Expect = 0.013
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQ 81
L EG VA G + ++
Sbjct: 74 FTPLVAEGARVAEGTEVARVR 94
Score = 34.0 bits (79), Expect = 0.025
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQ 199
L EG V G + ++
Sbjct: 74 FTPLVAEGARVAEGTEVARVR 94
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring
enzyme, biotin, actyl COA carboxylase, fatty acid
synthesis, structural genomics; NMR {Homo sapiens}
Length = 99
Score = 32.4 bits (74), Expect = 0.026
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
GTI K K GD V GD L + K + ++ ++G + K+ E T +
Sbjct: 23 GTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQ-ANRHTPLVE 81
Query: 118 MVEEGED 124
EE D
Sbjct: 82 FEEEESD 88
Score = 27.0 bits (60), Expect = 2.2
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKA 203
GT+ K +EG L E + +++
Sbjct: 60 GTVKKVFYREGAQANRHTPLVEFEEEES 87
Score = 25.5 bits (56), Expect = 7.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 176 GTIVKWLKKEGDAVVPGDVLC 196
GTI K K GD V GD L
Sbjct: 23 GTIEKVFVKAGDKVKAGDSLM 43
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead,
biocytin, transferase; NMR {Propionibacterium
freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Length = 77
Score = 31.8 bits (73), Expect = 0.028
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETE----EEGILAKILVPENTTDVKVGT 113
GT+ K L KEGD V G + ++ M ETE +G + K+LV E V+ G
Sbjct: 17 GTVSKILVKEGDTVKAGQTVLVLEA----MKMETEINAPTDGKVEKVLVKERDA-VQGGQ 71
Query: 114 LIAVM 118
+ +
Sbjct: 72 GLIKI 76
Score = 27.6 bits (62), Expect = 0.88
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEI 198
G + K L KE DAV G L +I
Sbjct: 54 GKVEKVLVKERDAVQGGQGLIKI 76
Score = 26.4 bits (59), Expect = 2.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 176 GTIVKWLKKEGDAVVPGDVLC 196
GT+ K L KEGD V G +
Sbjct: 17 GTVSKILVKEGDTVKAGQTVL 37
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de
novo NAD biosynthesis, PRPP, phosphoribos transferase;
2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1
d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Length = 284
Score = 33.6 bits (78), Expect = 0.029
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQ 81
V ++G V PG+ L ++
Sbjct: 73 VLDRVEDGARVPPGEALMTLE 93
Score = 32.8 bits (76), Expect = 0.063
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQ 199
V ++G V PG+ L ++
Sbjct: 73 VLDRVEDGARVPPGEALMTLE 93
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid
biosynthesis, hamme structure, selenomethionine, ligase,
transferase; HET: BTN; 1.80A {Escherichia coli} SCOP:
b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Length = 80
Score = 31.4 bits (72), Expect = 0.040
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 66 KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVG 112
+ G V GD LC ++ K + E ++ G + ILV E+ V+
Sbjct: 28 EVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILV-ESGQPVEFD 73
Score = 27.6 bits (62), Expect = 0.99
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 184 KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+ G V GD LC ++ K + E ++ G + IL
Sbjct: 28 EVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAIL 63
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 33.1 bits (75), Expect = 0.079
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPT 172
ATSP + SP +P + P P+ SPT
Sbjct: 1518 EATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPT 1559
Score = 30.8 bits (69), Expect = 0.40
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTM 173
S TSP+ + ++ S SP P +P+S P P+
Sbjct: 1550 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1592
Score = 30.4 bits (68), Expect = 0.51
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 129 SVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPT 172
S S TSPS + ++ S SP P +P+S P PS SPT
Sbjct: 1611 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS----PSYSPT 1650
Score = 30.1 bits (67), Expect = 0.65
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTM 173
S TSPS + ++ S SP P +P+S P PS SPT
Sbjct: 1634 SPTSPSYSPTSPSYSPTSPSYSPTS----PAYSPTSPSYSPTS 1672
Score = 29.3 bits (65), Expect = 1.2
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 129 SVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPT 172
S S TSPS + ++ S SP P +P+S P P SP
Sbjct: 1674 SYSPTSPSYSPTSPSYSPTSPNYSPTS----PSYSPTSPGYSPG 1713
Score = 28.9 bits (64), Expect = 1.4
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPT 172
S TSPS + ++ S SP P +P+S P PS SPT
Sbjct: 1620 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS----PSYSPT 1657
Score = 28.9 bits (64), Expect = 1.6
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPT 172
+SP + ++ + SP P +P+S P PS SPT
Sbjct: 1536 GVSSPGFSPTSPTYSPTSPAYSPTSPSYSP----TSPSYSPT 1573
Score = 28.9 bits (64), Expect = 1.8
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGGSV---PGQIINMPSLSPTM 173
S TSP+ + ++ + SP P +P+S P PS SPT
Sbjct: 1543 SPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1588
Score = 27.8 bits (61), Expect = 3.3
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 129 SVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTM 173
+ + A++ + P +P G S PG P+ SPT
Sbjct: 1509 TAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTS 1553
Score = 27.8 bits (61), Expect = 3.5
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPT 172
S TSPS + ++ S SP P +P+S P PS SPT
Sbjct: 1585 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS----PSYSPT 1622
Score = 27.8 bits (61), Expect = 3.7
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 129 SVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPT 172
+ TSP S+ SP P +P+S P PS SPT
Sbjct: 1527 GEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTS----PSYSPT 1566
Score = 27.8 bits (61), Expect = 4.0
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGGSVPGQIIN---MPSLSPT 172
S TSP+ + ++ S SP P +P+S P P+ SPT
Sbjct: 1655 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPT 1699
Score = 27.0 bits (59), Expect = 6.0
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 127 NVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPT 172
+ S S TSPS + ++ S SP P +P+S P PS SPT
Sbjct: 1637 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSP----TSPSYSPT 1678
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP,
structural genomics, NPPSFA; 1.55A {Pyrococcus
horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Length = 74
Score = 30.3 bits (69), Expect = 0.091
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETE----EEGILAKILVPENTTDVKVGT 113
G +++ L + GD V G L ++ M E E +G++ +ILV E V G
Sbjct: 14 GKVLRVLVRVGDRVRVGQGLLVLEA----MKMENEIPSPRDGVVKRILVKEGEA-VDTGQ 68
Query: 114 LIAVM 118
+ +
Sbjct: 69 PLIEL 73
Score = 26.0 bits (58), Expect = 3.3
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 176 GTIVKWLKKEGDAVVPGDVLC 196
G +++ L + GD V G L
Sbjct: 14 GKVLRVLVRVGDRVRVGQGLL 34
Score = 25.7 bits (57), Expect = 3.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEI 198
G + + L KEG+AV G L E+
Sbjct: 51 GVVKRILVKEGEAVDTGQPLIEL 73
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase,
biotin, ATP-binding, disease mutation,
nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo
sapiens}
Length = 94
Score = 30.4 bits (69), Expect = 0.12
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
G +V K GDAVA G +C I+ K S + G + + T V G L+
Sbjct: 34 GVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDT-VGEGDLLVE 92
Query: 118 M 118
+
Sbjct: 93 L 93
Score = 28.1 bits (63), Expect = 0.71
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQ 81
GT+ + GD V GD+L E++
Sbjct: 71 GTVKSVHCQAGDTVGEGDLLVELE 94
Score = 26.6 bits (59), Expect = 2.9
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 15/60 (25%)
Query: 139 ASASSASPPPPPPAPSSGGSV--PGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLC 196
+S + + P MP G +V K GDAV G +C
Sbjct: 8 SSGVDLGTENLYFQSMTSSVLRSP-----MP--------GVVVAVSVKPGDAVAEGQEIC 54
Score = 26.2 bits (58), Expect = 3.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQ 199
GT+ + GD V GD+L E++
Sbjct: 71 GTVKSVHCQAGDTVGEGDLLVELE 94
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 32.4 bits (73), Expect = 0.13
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 131 SATSPSATASASSASPPPP---PPAPSSGGSVPGQIINMPSLSPT 172
S TSPS + ++ S SP P P +PS + P PS SPT
Sbjct: 1691 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1735
Score = 30.4 bits (68), Expect = 0.48
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 129 SVSATSPSATASASSASPPPPPPAPSSGGSVPGQII---NMPSLSPT 172
S S TSPS + ++ S SP P +P+S P PS SPT
Sbjct: 1626 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1672
Score = 30.0 bits (67), Expect = 0.71
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPT 172
S TSPS + ++ S SP P +P+S P PS SPT
Sbjct: 1614 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS----PSYSPT 1651
Score = 29.3 bits (65), Expect = 1.1
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPT 172
S TSPS + ++ S SP P +P+S PS SPT
Sbjct: 1579 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSATS----PSYSPT 1616
Score = 29.3 bits (65), Expect = 1.3
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGG---SVPGQIINMPSLSPT 172
S TSPS + ++ S SP P +P+S + P PS SPT
Sbjct: 1649 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1693
Score = 28.9 bits (64), Expect = 1.7
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 129 SVSATSPSATASASSASPPPPPPAPSS--GGSVPGQIINMPSLSPT 172
S TSP ++A + P +PSS + P + + PS SPT
Sbjct: 1536 SPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPT 1581
Score = 28.1 bits (62), Expect = 3.2
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPT 172
S TSPS + ++ S S P +P+S P PS SPT
Sbjct: 1593 SPTSPSYSPTSPSYSATSPSYSPTSPSYSPTS----PSYSPT 1630
Score = 27.7 bits (61), Expect = 3.8
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 127 NVSVSATSPS---ATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTM 173
+ S S TSPS + S S SP P +PS + P PS SPT
Sbjct: 1659 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1708
Score = 27.3 bits (60), Expect = 5.3
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 131 SATSPSATASA---SSASPPPPPPAPSSGGSVPGQIINMPSLSPT 172
S TSPS + ++ S SP P +PS + P PS SPT
Sbjct: 1684 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1728
Score = 26.6 bits (58), Expect = 7.7
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 129 SVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPT 172
S S TSPS +A++ S SP P +P+S P PS SPT
Sbjct: 1598 SYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTS----PSYSPT 1637
Score = 26.6 bits (58), Expect = 8.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 129 SVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPT 172
+++ S S ++ S SP P +PS + P PS SPT
Sbjct: 1552 GLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPT 1595
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 31.5 bits (72), Expect = 0.18
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 51 LSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVK 110
L P M G IVK + G V G LC I+ K E++G++AKI + +
Sbjct: 616 LCP-MP-GLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNS-LA 672
Query: 111 VGTLIAV 117
V +I
Sbjct: 673 VDDVIME 679
Score = 31.1 bits (71), Expect = 0.29
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 11/56 (19%)
Query: 141 ASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLC 196
A A P P + + L P M G IVK + G V G LC
Sbjct: 597 AELARLMPEKLPPDTSKML---------LCP-MP-GLIVKVDVEVGQEVQEGQALC 641
Score = 26.5 bits (59), Expect = 7.5
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQ 81
G + K G+++A DV+ E +
Sbjct: 658 GVVAKINASAGNSLAVDDVIMEFE 681
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 242
Score = 31.1 bits (71), Expect = 0.22
Identities = 3/32 (9%), Positives = 7/32 (21%)
Query: 128 VSVSATSPSATASASSASPPPPPPAPSSGGSV 159
+ ++ A S P +
Sbjct: 119 LIITDKQLDADVSPKPTIFLPSIAETKLQKAG 150
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 31.2 bits (71), Expect = 0.25
Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 26/83 (31%)
Query: 45 EIKMPSLSPTMTEGTIVKW----LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKI 100
+ + +L KW + K GD V G VL + E G KI
Sbjct: 105 GVVVHALDRE------KKWAWTPMVKPGDEVRGGMVLGTVP-----------EFGFTHKI 147
Query: 101 LVPENTTDVKVGTLIAVMVEEGE 123
LVP + G + V GE
Sbjct: 148 LVPPDVR----GRVKEV-KPAGE 165
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein,
hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Length = 138
Score = 30.0 bits (67), Expect = 0.29
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 128 VSVSATSPSATASASSASPPPPPPAPSSG 156
++V A + + + S+SPP P
Sbjct: 104 INVVAANATVSMPPPSSSPPSSVMPPPVM 132
Score = 30.0 bits (67), Expect = 0.30
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 115 IAVMVEEGEDWQNVSVSATSPSATASASSASPPPPP 150
+++ V ++ ++SP ++ PPP P
Sbjct: 102 LSINVVAANATVSMPPPSSSPPSSVMPPPVMPPPSP 137
Score = 27.3 bits (60), Expect = 2.3
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 127 NVSVSATSPSATASASSASPPPPPPAPSSGGS 158
NV + + S +SS PP S
Sbjct: 105 NVVAANATVSMPPPSSSPPSSVMPPPVMPPPS 136
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 30.3 bits (68), Expect = 0.48
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 127 NVSVSATSPSATASASSASPPPPPPAPS--SGGSVPGQIINMPSLSPTMTEGTI 178
V+A + +A ++ +PP AP+ + N P T+
Sbjct: 10 TPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATV 63
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Shewanella
amazonensis} PDB: 3lwu_A*
Length = 368
Score = 30.3 bits (67), Expect = 0.48
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 15/70 (21%)
Query: 60 IVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV-- 117
+V++L K G + D L + + E + PE+ G I
Sbjct: 300 MVEYLGKVGVPMKATDPLVNL-LRLDLYGTGEELTVLRL----PED------GVPILHFA 348
Query: 118 --MVEEGEDW 125
V +G +
Sbjct: 349 SASVHQGTEL 358
Score = 28.0 bits (61), Expect = 2.9
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 178 IVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILA 216
+V++L K G + D L + + E +
Sbjct: 300 MVEYLGKVGVPMKATDPLVNL-LRLDLYGTGEELTVLRL 337
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 30.1 bits (67), Expect = 0.49
Identities = 14/66 (21%), Positives = 21/66 (31%)
Query: 122 GEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKW 181
GE WQ V +S + T S + P P P G+ + + V
Sbjct: 24 GERWQRVLLSLAEDALTVSPADGEPGPEPEPAQLNGAAEPGAAPPQLPEALLLQRRRVTV 83
Query: 182 LKKEGD 187
K +
Sbjct: 84 RKADAG 89
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 29.6 bits (67), Expect = 0.66
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTD 83
G + GD V +L I +
Sbjct: 40 GQLKTLSVAIGDKVKKDQLLGVIDPE 65
Score = 29.3 bits (66), Expect = 1.0
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTD 201
G + GD V +L I +
Sbjct: 40 GQLKTLSVAIGDKVKKDQLLGVIDPE 65
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 29.5 bits (65), Expect = 0.75
Identities = 7/52 (13%), Positives = 16/52 (30%)
Query: 126 QNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGT 177
+ + + + T + + + P AP+ P +P E
Sbjct: 254 SVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYH 305
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 27.7 bits (62), Expect = 0.91
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 12/59 (20%)
Query: 110 KVGTLIAVMVEEGEDWQNVS------------VSATSPSATASASSASPPPPPPAPSSG 156
K G ++ ++ +DW V V P+ +AS + PPP P S+G
Sbjct: 22 KKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSASRENLGGPPPVPPYSAG 80
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB
(CZCB-LIKE); structural genomics, PSI-2, protein
structure initiative; 2.80A {Cupriavidus metallidurans}
Length = 359
Score = 29.3 bits (66), Expect = 0.96
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 57 EGTIVKWLKKEGDAVAPGDVLCEI 80
G IV K+ GD V GDVL I
Sbjct: 65 AGRIVSLNKQLGDEVKAGDVLFTI 88
Score = 27.8 bits (62), Expect = 3.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 175 EGTIVKWLKKEGDAVVPGDVLCEI 198
G IV K+ GD V GDVL I
Sbjct: 65 AGRIVSLNKQLGDEVKAGDVLFTI 88
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 29.4 bits (66), Expect = 0.97
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTD 83
G I K K G V GD+L EI +
Sbjct: 41 GKITKLYVKLGQQVKKGDLLAEIDST 66
Score = 29.0 bits (65), Expect = 1.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTD 201
G I K K G V GD+L EI +
Sbjct: 41 GKITKLYVKLGQQVKKGDLLAEIDST 66
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6,
mechanism, cytoplasm, glycosyltransferase, nucleus;
1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A*
3c2v_A* 3c2r_A*
Length = 294
Score = 29.0 bits (66), Expect = 0.99
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
Query: 61 VKWLKKEGDAVAPGD------VLCEIQ 81
V+WL KEG + P V+ +I
Sbjct: 69 VEWLFKEGSFLEPSKNDSGKIVVAKIT 95
Score = 28.7 bits (65), Expect = 1.6
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
Query: 179 VKWLKKEGDAVVPGD------VLCEIQ 199
V+WL KEG + P V+ +I
Sbjct: 69 VEWLFKEGSFLEPSKNDSGKIVVAKIT 95
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 28.8 bits (65), Expect = 1.7
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 129 SVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTI-VKWLKKEGD 187
+ +A + + P P PS +M + +T G I + + ++
Sbjct: 38 TDDDDKAMGSAPSFNVDPLEQPAEPSKLAKKLRAEPDMDTSFVGLTGGQIFNEMMSRQNV 97
Query: 188 AVV---PG 192
V PG
Sbjct: 98 DTVFGYPG 105
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 27.0 bits (60), Expect = 2.0
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 127 NVSVSA-----TSPSATASASSASPPPPPPAPSSG 156
V V+ S + T ++ P P PSSG
Sbjct: 74 TVRVTCLYPGGGSSTLTGRVTTKKAPSPSSGPSSG 108
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 28.0 bits (63), Expect = 2.3
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 129 SVSATSPSATASASSASP--PPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEG 186
+V + +P A A+ +P PP A G VP + + L+ + L+ G
Sbjct: 2 TVESVNPETRAPAAPGAPELREPPVAG---GGVPL-LGHGWRLARDPLA--FMSQLRDHG 55
Query: 187 DAV 189
D V
Sbjct: 56 DVV 58
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 28.2 bits (63), Expect = 2.4
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 19/67 (28%)
Query: 61 VKW----LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIA 116
KW K GD V GD++ E+ E I+ KI+VP G ++
Sbjct: 116 KKWHFIPKAKVGDKVVGGDIIGEVP----------ETSIIVHKIMVPPGIE----GEIVE 161
Query: 117 VMVEEGE 123
+ EEG+
Sbjct: 162 I-AEEGD 167
>2e0w_A Gamma-glutamyltranspeptidase; NTN hydrolase, precursor, gamma-GTP,
post-translational PROC maturation, transferase; 2.55A
{Escherichia coli K12} SCOP: d.153.1.6
Length = 556
Score = 27.9 bits (63), Expect = 2.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 150 PPAPSSGGSVPGQIINM 166
P PSSGG QI+N+
Sbjct: 266 MPPPSSGGIHIVQILNI 282
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics,
glycosyltransferase, transferase; HET: MSE THM; 1.94A
{Staphylococcus aureus}
Length = 436
Score = 28.0 bits (63), Expect = 2.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQTDKA 85
+ KK GD V G+ L I +++
Sbjct: 381 IVLNKKIGDKVEEGESLLTIHSNRQ 405
Score = 27.3 bits (61), Expect = 4.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQTDKA 203
+ KK GD V G+ L I +++
Sbjct: 381 IVLNKKIGDKVEEGESLLTIHSNRQ 405
>2g38_B PPE family protein; protein-protein complex, structural genomics,
PSI, protein S initiative, TB structural genomics
consortium, TBSGC; 2.20A {Mycobacterium tuberculosis}
SCOP: a.25.4.2
Length = 198
Score = 27.4 bits (60), Expect = 2.9
Identities = 7/41 (17%), Positives = 13/41 (31%)
Query: 121 EGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPG 161
+ ++ V + A S P P P + +V
Sbjct: 140 DDFWDEDGEVMRDYRLRVSDALSKLTPWKAPPPIAHSTVLV 180
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain
movement, transferase; HET: MES; 2.10A {Geobacillus
stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Length = 433
Score = 27.7 bits (62), Expect = 3.0
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQTDKA 85
+ KK GD V G+ L I +++
Sbjct: 378 IVLHKKIGDRVQKGEALATIHSNRP 402
Score = 27.3 bits (61), Expect = 5.0
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQTDKA 203
+ KK GD V G+ L I +++
Sbjct: 378 IVLHKKIGDRVQKGEALATIHSNRP 402
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase;
pyrimidine-nucleoside phosphorylase, structural
genomics; 1.80A {Thermus thermophilus}
Length = 423
Score = 27.7 bits (62), Expect = 3.8
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQTDKA 85
V LKK GD V G+ L + +
Sbjct: 370 VYLLKKPGDRVERGEALALVYHRRR 394
Score = 26.5 bits (59), Expect = 6.9
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQTDKA 203
V LKK GD V G+ L + +
Sbjct: 370 VYLLKKPGDRVERGEALALVYHRRR 394
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural
genomics, joint center for structural genomics; HET:
MSE; 2.20A {Methanococcus maripaludis}
Length = 169
Score = 27.0 bits (59), Expect = 3.8
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA-VMSFETEEEGILAKILVPENTTD 108
EG V + G V G L +++ K + + G + I + E ++
Sbjct: 108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTV--IFMNEIPSE 158
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Length = 116
Score = 26.4 bits (59), Expect = 3.9
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFE 90
G IV L K GD V G L I+ D+A F
Sbjct: 9 SGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFN 42
Score = 25.6 bits (57), Expect = 8.0
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFE 208
G IV L K GD V G L I+ D+A F
Sbjct: 9 SGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFN 42
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase,
chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens}
SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A
2j0f_A
Length = 474
Score = 27.3 bits (61), Expect = 4.0
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQTDK 84
+ L G + G + D
Sbjct: 413 AELLVDVGQRLRRGTPWLRVHRDG 436
Score = 26.6 bits (59), Expect = 7.1
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQTDK 202
+ L G + G + D
Sbjct: 413 AELLVDVGQRLRRGTPWLRVHRDG 436
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 27.4 bits (60), Expect = 4.1
Identities = 7/45 (15%), Positives = 15/45 (33%)
Query: 128 VSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPT 172
V+V +P + ++ +PP S + + S
Sbjct: 43 VTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLA 87
Score = 27.0 bits (59), Expect = 5.5
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 128 VSVSATSPSATASASSASPPPPPPAPSSGGSVPGQ 162
+ + + S ++ AS A+ PP P P
Sbjct: 21 MVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPA 55
Score = 26.3 bits (57), Expect = 8.8
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGT 177
++ + +A+ ++ PP P P+ N P +
Sbjct: 26 ASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQ 72
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 27.4 bits (60), Expect = 4.3
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 10/90 (11%)
Query: 124 DWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLK 183
+ P + S+ P + G G ++P + I L
Sbjct: 58 TLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLG 117
Query: 184 KEGDAVVP----------GDVLCEIQTDKA 203
G VP +C I D++
Sbjct: 118 LNGVLKVPAHPSGNMASFTKHICAICGDRS 147
>3hrq_A PKS, aflatoxin biosynthesis polyketide synthase; hot-DOG fold,
iterative type I PKS, norsolorinic acid, product
template domain; HET: PLM; 1.80A {Aspergillus
parasiticus} PDB: 3hrr_A*
Length = 357
Score = 27.4 bits (60), Expect = 4.5
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 13/60 (21%)
Query: 106 TTDVKV---GTLIAVMVEEGEDWQNVSVSA--------TSPSATASASSASPPPPPPAPS 154
DV V ++A G ++V A + P PPPP +
Sbjct: 299 HGDVVVLDGEQIVAFF--RGLTLRSVPRGALRVVLQTTVKKADRQLGFKTMPSPPPPTTT 356
>2qmc_A GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET:
GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_A* 3fnm_A*
2nqo_A
Length = 377
Score = 27.2 bits (61), Expect = 4.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 151 PAPSSGGSVPGQIINM 166
PSSGG+ QI+N+
Sbjct: 278 SPPSSGGTHLIQILNV 293
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A
{Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB:
1azy_A 1tpt_A 1otp_A
Length = 440
Score = 27.3 bits (61), Expect = 4.8
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQTDK 84
+ + GD V L I
Sbjct: 383 FTDMARLGDQVDGQRPLAVIHAKD 406
Score = 26.5 bits (59), Expect = 7.5
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQTDK 202
+ + GD V L I
Sbjct: 383 FTDMARLGDQVDGQRPLAVIHAKD 406
>2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT,
gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli
K12} SCOP: d.153.1.6 PDB: 2dbu_A 2dbw_A* 2dbx_A* 2e0x_A
2e0y_A 2z8i_A* 2z8j_A* 2z8k_A*
Length = 366
Score = 27.1 bits (61), Expect = 4.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 151 PAPSSGGSVPGQIINM 166
P PSSGG QI+N+
Sbjct: 267 PPPSSGGIHIVQILNI 282
>2v36_A Gamma-glutamyltranspeptidase large chain; transferase, glutathione
biosynthesis, gamma-glutamyl transferase,
acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB:
3a75_A*
Length = 376
Score = 26.7 bits (60), Expect = 5.6
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 151 PAPSSGGSVPGQIINM 166
P PSSGG Q+ +
Sbjct: 263 PPPSSGGIFLLQMPKI 278
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study,
celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Length = 741
Score = 26.8 bits (60), Expect = 6.0
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 128 VSVSATSPSATASASSASPPPPPPAP 153
V+ + T P+ + S PP P +P
Sbjct: 19 VAFAQTPPTLAKDQAMPSLPPYPASP 44
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase
inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB:
1f34_B*
Length = 149
Score = 26.0 bits (56), Expect = 6.7
Identities = 8/29 (27%), Positives = 9/29 (31%)
Query: 126 QNVSVSATSPSATASASSASPPPPPPAPS 154
+ S A A PPP PS
Sbjct: 116 EQQENQPPSSGMPHGAVPAGGLSPPPPPS 144
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 26.5 bits (58), Expect = 7.2
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 138 TASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDA 188
T + S++ P P P+ +G E + + + +
Sbjct: 200 TGNPSNSWPSPTEPSSETGNPRHLHAA--AEQKLISEEDLNLDLVPRGSSS 248
>1evs_A Oncostatin M; 4-helix bundle, GP130 binding cytokine; 2.20A {Homo
sapiens} SCOP: a.26.1.1
Length = 187
Score = 26.4 bits (57), Expect = 7.4
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 130 VSATSPSATASASSASPPPPPPAPSS 155
+ + + A + PP P P+S
Sbjct: 132 LDNSDTAEPTKAGRGASQPPTPTPAS 157
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 25.2 bits (55), Expect = 7.5
Identities = 11/37 (29%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 144 ASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVK 180
PPP P P G + MTE IV
Sbjct: 3 KERPPPVPNPDYNSLKKGS----LVKNLHMTEEVIVI 35
>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like
family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena
SP}
Length = 252
Score = 26.3 bits (57), Expect = 7.6
Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 87 MSFETEE-EGILAKILVPENTTDVKVGTL---IAVMVEEGEDWQNVSVSATSPSATA--- 139
+ ++ +G+L ++ D++V + + + ++ + W N V SP +
Sbjct: 161 LFLSKQDAQGLLGQVKPKHPKADIQVLDIDGVLQTLQDKNDTWLNQVVLVPSPESREYIR 220
Query: 140 SASSASPPPPPPAPSSGGSVPG 161
+ P P ++ S PG
Sbjct: 221 TLPKPPNTPAAPNRNNNNSRPG 242
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 26.5 bits (59), Expect = 8.1
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 18/70 (25%)
Query: 44 QEIKMPSLSP----TMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAK 99
+E K+P T EG ++ L+ G + + D TE E L K
Sbjct: 317 EEFKLPKDGKMVRLTYKEG--IEMLRAAGKEIGDFE-------D-----LSTENEKFLGK 362
Query: 100 ILVPENTTDV 109
++ + TD
Sbjct: 363 LVRDKYDTDF 372
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga
maritima}
Length = 193
Score = 26.0 bits (57), Expect = 8.3
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 66 KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 102
G V GD++ E A S + + KI+V
Sbjct: 26 NNGKDVNKGDLIAEEPPIYARRSGVIVDVKNVRKIVV 62
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein;
HTLV-II matrix protein, retroviral matrix protein; NMR
{Human t-lymphotropic virus 2} SCOP: a.61.1.2
Length = 137
Score = 25.6 bits (55), Expect = 9.6
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 110 KVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVP 160
+V +I ++V+ VS SA + + PPPPP PS VP
Sbjct: 80 RVVEIINILVKN-----QVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVP 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.128 0.361
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,261,912
Number of extensions: 190436
Number of successful extensions: 1190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1086
Number of HSP's successfully gapped: 236
Length of query: 219
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 129
Effective length of database: 4,188,903
Effective search space: 540368487
Effective search space used: 540368487
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.5 bits)