RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10439
(219 letters)
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide
acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 98.4 bits (245), Expect = 2e-27
Identities = 43/80 (53%), Positives = 61/80 (76%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
++ +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +EEG LAKILVPE
Sbjct: 7 QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 66
Query: 105 NTTDVKVGTLIAVMVEEGED 124
T DV +GT + ++VE+ D
Sbjct: 67 GTRDVPLGTPLCIIVEKEAD 86
Score = 69.5 bits (170), Expect = 2e-16
Identities = 33/60 (55%), Positives = 44/60 (73%)
Query: 160 PGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
P + +P+LSPTMT GT+ +W KK G+ + GD+L EI+TDKA + FE +EEG LAKIL
Sbjct: 4 PHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKIL 63
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Escherichia coli [TaxId: 562]}
Length = 80
Score = 89.1 bits (221), Expect = 4e-24
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
+I +P L ++ + T+ W KK GDAV +VL EI+TDK V+ +GIL +L E
Sbjct: 4 DILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDE 63
Query: 105 NTTDVKVGTLIAVMVE 120
TT V ++ + E
Sbjct: 64 GTT-VTSRQILGRLRE 78
Score = 69.4 bits (170), Expect = 1e-16
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
I +P L ++ + T+ W KK GDAVV +VL EI+TDK V+ +GIL +L
Sbjct: 5 ILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVL 60
Score = 29.3 bits (66), Expect = 0.091
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 171 PTMTEGTIVKWLKKEGDAVVPGDVLCEI 198
P +G + L+ EG V +L +
Sbjct: 49 PASADGILDAVLEDEGTTVTSRQILGRL 76
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial
branched-chain alpha-ketoacid dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 89.1 bits (221), Expect = 6e-24
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
+ K+ + + E T+ +W KEGD V+ D +CE+Q+DKA ++ + +G++ K+
Sbjct: 6 QFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNL 65
Query: 105 NTTDVKVGTLIAVMVEEGED 124
+ VG + + E
Sbjct: 66 DDI-AYVGKPLVDIETEALK 84
Score = 66.7 bits (163), Expect = 2e-15
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+ + + E T+ +W KEGD V D +CE+Q+DKA ++ + +G++ K+
Sbjct: 7 FKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLY 62
Score = 32.4 bits (74), Expect = 0.007
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 27/105 (25%)
Query: 99 KILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGS 158
+ + + ++ T+ V+EG+ +VS + AS
Sbjct: 6 QFKLSDIGEGIREVTVKEWYVKEGD-----TVSQFDSICEVQSDKASVTITSRY------ 54
Query: 159 VPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKA 203
+G I K D G L +I+T+
Sbjct: 55 ----------------DGVIKKLYYNLDDIAYVGKPLVDIETEAL 83
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Azotobacter vinelandii [TaxId:
354]}
Length = 79
Score = 87.6 bits (217), Expect = 2e-23
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
+IK P+ ++ +GT+ W KK G+AV +++ +I+TDK VM E +G++A+I+ E
Sbjct: 3 DIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE 62
Query: 105 NTTDVKVGTLIAVMVEEG 122
T V G L+ + E G
Sbjct: 63 GDT-VLSGELLGKLTEGG 79
Score = 64.8 bits (158), Expect = 1e-14
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
I P+ ++ +GT+ W KK G+AV +++ +I+TDK VM E +G++A+I+
Sbjct: 4 IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIV 59
Score = 29.0 bits (65), Expect = 0.094
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 171 PTMTEGTIVKWLKKEGDAVVPGDVLCEIQTD 201
+G I + +K EGD V+ G++L ++
Sbjct: 48 LAEADGVIAEIVKNEGDTVLSGELLGKLTEG 78
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 80
Score = 87.5 bits (217), Expect = 2e-23
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
E K+P + + EG IVKW K GD V DVLCE+Q DKAV+ + +G + +ILVPE
Sbjct: 3 EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 62
Query: 105 NTTDVKVGTLIAVMVEEG 122
T VG + + G
Sbjct: 63 GTV-ATVGQTLITLDAPG 79
Score = 65.9 bits (161), Expect = 3e-15
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+P + + EG IVKW K GD V DVLCE+Q DKAV+ + +G + +IL
Sbjct: 4 FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 59
Score = 30.9 bits (70), Expect = 0.021
Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 27/103 (26%)
Query: 99 KILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGS 158
+ +P+ + G ++ V+ G+ V+ A P P
Sbjct: 3 EFKLPDIGEGIHEGEIVKWFVKPGD-----EVNEDDVLCEVQNDKAVVEIPSPV------ 51
Query: 159 VPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTD 201
+G +++ L EG G L +
Sbjct: 52 ----------------KGKVLEILVPEGTVATVGQTLITLDAP 78
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Neisseria meningitidis [TaxId: 487]}
Length = 81
Score = 76.7 bits (189), Expect = 3e-19
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
E+K+P + I+ GD +A D L ++TDKA M E G++ ++ V
Sbjct: 4 ELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKV 62
Query: 105 NTTDVKVGTLIAVMVEEGE 123
+ G LI V+ EG
Sbjct: 63 GDK-ISEGGLIVVVEAEGT 80
Score = 55.9 bits (135), Expect = 2e-11
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+ +P + I+ GD + D L ++TDKA M E G++ ++
Sbjct: 5 LKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVK 59
Score = 26.3 bits (58), Expect = 0.91
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTD 201
G + + K GD + G ++ ++ +
Sbjct: 53 GVVKEVKVKVGDKISEGGLIVVVEAE 78
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Escherichia coli [TaxId: 562]}
Length = 80
Score = 74.1 bits (182), Expect = 2e-18
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
+E+ +P + E + + + K GD VA L ++ DKA M G++ ++ V
Sbjct: 3 KEVNVPDIG--GDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVN 60
Query: 104 ENTTDVKVGTLIAVMVEEGE 123
VK G+LI + EG
Sbjct: 61 VGDK-VKTGSLIMIFEVEGA 79
Score = 52.9 bits (127), Expect = 3e-10
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+N+P + E + + + K GD V L ++ DKA M G++ ++
Sbjct: 5 VNVPDIG--GDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELK 58
Score = 27.1 bits (60), Expect = 0.54
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKA 203
G + + GD V G ++ + + A
Sbjct: 52 GVVKELKVNVGDKVKTGSLIMIFEVEGA 79
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Length = 79
Score = 66.8 bits (163), Expect = 1e-15
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
+ I++P + +G +++ L K GD + L +++ KA M + + G++ + V
Sbjct: 2 EIIRVPDI---GGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVK 58
Query: 104 ENTTDVKVGTLIAVMVEEG 122
+K G I +
Sbjct: 59 LGDK-LKEGDAIIELEPAA 76
Score = 53.7 bits (129), Expect = 1e-10
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
+II +P + +G +++ L K GD + L +++ KA M + + G++ +
Sbjct: 2 EIIRVPDI---GGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVS 56
Score = 28.3 bits (63), Expect = 0.20
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 47 KMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKA 85
K P+ G + K GD + GD + E++
Sbjct: 39 KASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAG 77
Score = 26.0 bits (57), Expect = 1.2
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 171 PTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKA 203
P+ G + K GD + GD + E++
Sbjct: 45 PSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAG 77
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of
transcarboxylase (TC 1.3S) {Propionibacterium
freudenreichii, subsp. shermanii [TaxId: 1744]}
Length = 77
Score = 55.7 bits (134), Expect = 3e-11
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
GT+ K L KEGD V G + ++ K +G + K+LV E V+ G +
Sbjct: 17 GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIK 75
Query: 118 M 118
+
Sbjct: 76 I 76
Score = 44.9 bits (106), Expect = 2e-07
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
GT+ K L KEGD V G + ++ K +G + K+L
Sbjct: 17 GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVL 60
Score = 29.5 bits (66), Expect = 0.062
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 57 EGTIVKWLKKEGDAVAPGDVLCEI 80
+G + K L KE DAV G L +I
Sbjct: 53 DGKVEKVLVKERDAVQGGQGLIKI 76
Score = 28.3 bits (63), Expect = 0.17
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 175 EGTIVKWLKKEGDAVVPGDVLCEI 198
+G + K L KE DAV G L +I
Sbjct: 53 DGKVEKVLVKERDAVQGGQGLIKI 76
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 237
Score = 32.0 bits (71), Expect = 0.037
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKA 85
G I+K L KEG V G L +I
Sbjct: 22 VNGIILKRLFKEGSDVKAGQQLYQIDPATY 51
Score = 30.8 bits (68), Expect = 0.11
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKA 203
G I+K L KEG V G L +I
Sbjct: 22 VNGIILKRLFKEGSDVKAGQQLYQIDPATY 51
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 30.3 bits (68), Expect = 0.041
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 53 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQ 81
GT+ L + G V + L I+
Sbjct: 52 EADKSGTVKAILVESGQPVEFDEPLVVIE 80
Score = 28.8 bits (64), Expect = 0.12
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 171 PTMTEGTIVKWLKKEGDAVVPGDVLCEIQ 199
GT+ L + G V + L I+
Sbjct: 52 EADKSGTVKAILVESGQPVEFDEPLVVIE 80
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 28.2 bits (63), Expect = 0.35
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 129 SVSATSPSATASASSASPPPPPPAPSSGGSV 159
+ S A A+ +A P P P++ S+
Sbjct: 17 AASPGGAQAPATTGAAGTAPTAPQPTAAPSI 47
Score = 27.8 bits (62), Expect = 0.55
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 122 GEDWQNVSVSATSPSATASASSASPPPPPPAPSS 155
G+ A +P+ T +A +A P P A S
Sbjct: 13 GDSAAASPGGAQAPATTGAAGTAPTAPQPTAAPS 46
Score = 26.7 bits (59), Expect = 1.2
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 132 ATSPSATASASSASPPPPPPAPSSGGSVP 160
A SP + ++ P + P
Sbjct: 17 AASPGGAQAPATTGAAGTAPTAPQPTAAP 45
Score = 25.1 bits (55), Expect = 4.2
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 131 SATSPSATASASSASPPPPPPAPSSGGSVPGQ 162
+ + S + + A+ AP++
Sbjct: 14 DSAAASPGGAQAPATTGAAGTAPTAPQPTAAP 45
>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga
maritima [TaxId: 2336]}
Length = 420
Score = 29.0 bits (63), Expect = 0.43
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 9/63 (14%)
Query: 166 MPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDK-------AVMSFETEEEGI--LA 216
+L + ++ K++ VPG V + E EGI L
Sbjct: 348 WLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLR 407
Query: 217 KIL 219
+++
Sbjct: 408 EVV 410
>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 103
Score = 26.6 bits (59), Expect = 1.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQTDK 84
+ KK GD V G+ L I +++
Sbjct: 48 IVLHKKIGDRVQKGEALATIHSNR 71
Score = 25.9 bits (57), Expect = 2.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQTDK 202
+ KK GD V G+ L I +++
Sbjct: 48 IVLHKKIGDRVQKGEALATIHSNR 71
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 25.9 bits (57), Expect = 2.1
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 7/37 (18%)
Query: 139 ASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTE 175
+S SS +P P S P P + +
Sbjct: 2 SSGSSGAPAEPAAPKSGEA-------ETPPKHPGVLK 31
>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII)
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 26.2 bits (58), Expect = 2.2
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 175 EGTIVKWLKKEGDAVVPGDVLCEIQTDK 202
+G K + +EG V GD + E
Sbjct: 81 KGEGFKRIAEEGQRVKVGDTVIEFDLPL 108
Score = 25.8 bits (57), Expect = 2.7
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDK 84
+G K + +EG V GD + E
Sbjct: 81 KGEGFKRIAEEGQRVKVGDTVIEFDLPL 108
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid
dehydrogenase, PP module {Human (Homo sapiens) [TaxId:
9606]}
Length = 395
Score = 26.7 bits (58), Expect = 2.2
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 25 FLNKSKIICLHTTNILDAQQEIKMPSLSPTMTEGTIVKWLKK 66
F+ + I + ++D Q +I PS P + + ++K K
Sbjct: 17 FIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKS 58
>d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 556
Score = 26.9 bits (58), Expect = 2.5
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 28 KSKIICLHTTNILDAQQEIKMPSLSPTMTEGTIVKWLKKEG 68
+ T + E+K T+ I++ +K+ G
Sbjct: 431 AVWVKNELPTGTFRVKAEVKSVPKVLPFTQSEIIQMMKERG 471
>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc
{Mycoplasma capricolum [TaxId: 2095]}
Length = 154
Score = 25.9 bits (57), Expect = 2.7
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 175 EGTIVKWLKKEGDAVVPGDVLCEIQTDK 202
+G + + V GD L +
Sbjct: 87 DGNGFESFVTQDQEVNAGDKLVTVDLKS 114
Score = 25.5 bits (56), Expect = 3.8
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 11/70 (15%)
Query: 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDK--------AVMSFETEEEGILAKILVPENTTD 108
+G + + V GD L + T K L +
Sbjct: 87 DGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNG---GKTLEIVKMGE 143
Query: 109 VKVGTLIAVM 118
VK G ++A++
Sbjct: 144 VKQGDVVAIL 153
>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc
{Bacillus subtilis [TaxId: 1423]}
Length = 158
Score = 25.5 bits (56), Expect = 3.6
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 175 EGTIVKWLKKEGDAVVPGDVLCEIQTDK 202
+G EGD V PG L E+ D
Sbjct: 89 KGEGFTSFVSEGDRVEPGQKLLEVDLDA 116
Score = 25.1 bits (55), Expect = 5.3
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 57 EGTIVKWLKKEGDAVAPGDVLCEIQTDK 84
+G EGD V PG L E+ D
Sbjct: 89 KGEGFTSFVSEGDRVEPGQKLLEVDLDA 116
>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 25.0 bits (54), Expect = 3.8
Identities = 6/34 (17%), Positives = 7/34 (20%)
Query: 123 EDWQNVSVSATSPSATASASSASPPPPPPAPSSG 156
E + A PSSG
Sbjct: 60 EKMPSSENEKAVSPKKALLPPTVSLSATSGPSSG 93
>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 25.1 bits (55), Expect = 4.0
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 61 VKWLKKEGDAVAPGDVLCEIQTDK 84
+ L G + G + D
Sbjct: 46 AELLVDVGQRLRRGTPWLRVHRDG 69
Score = 24.4 bits (53), Expect = 7.3
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 179 VKWLKKEGDAVVPGDVLCEIQTDK 202
+ L G + G + D
Sbjct: 46 AELLVDVGQRLRRGTPWLRVHRDG 69
>d2tpta3 d.41.3.1 (A:336-440) Thymidine phosphorylase {Escherichia
coli [TaxId: 562]}
Length = 105
Score = 24.7 bits (54), Expect = 4.6
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 58 GTIVKWLKKEGDAVAPGDVLCEIQTDK 84
+ + GD V L I
Sbjct: 45 SVGFTDMARLGDQVDGQRPLAVIHAKD 71
Score = 24.0 bits (52), Expect = 9.2
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTDK 202
+ + GD V L I
Sbjct: 45 SVGFTDMARLGDQVDGQRPLAVIHAKD 71
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
virus type 2 [TaxId: 11909]}
Length = 137
Score = 25.2 bits (55), Expect = 4.8
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 128 VSVSATSPSATASASSASPPPPPPAPSSGGSVP 160
VS SA + + PPPPP PS VP
Sbjct: 93 VSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVP 125
>d2g38b1 a.25.4.2 (B:2-174) PPE41 {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 173
Score = 25.2 bits (55), Expect = 5.0
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 126 QNVSVSATSPSATASASSASPPPPPPAP 153
++ V + A S P P P
Sbjct: 144 EDGEVMRDYRLRVSDALSKLTPWKAPPP 171
>d1evsa_ a.26.1.1 (A:) Oncostatin M {Human (Homo sapiens) [TaxId:
9606]}
Length = 184
Score = 25.0 bits (54), Expect = 6.5
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 131 SATSPSATASASSASPPPPPPAPSS 155
++ + T + AS PP P S
Sbjct: 131 NSDTAEPTKAGRGASQPPTPTPASD 155
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.128 0.361
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 775,987
Number of extensions: 34276
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 63
Length of query: 219
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,281,736
Effective search space: 175597832
Effective search space used: 175597832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.6 bits)