BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10440
(64 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From
Human 2-Oxoacid Dehydrogenase
Length = 98
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ + ++GILAKI+V E +
Sbjct: 12 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 71
Query: 61 D 61
+
Sbjct: 72 N 72
>pdb|1ZY8|K Chain K, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|L Chain L, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|M Chain M, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|N Chain N, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|O Chain O, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 229
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ + ++GILAKI+V E +
Sbjct: 8 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 67
Query: 61 D 61
+
Sbjct: 68 N 68
>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|B Chain B, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|C Chain C, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|G Chain G, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 128
Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 48/61 (78%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +EEG LAKILVPE T
Sbjct: 32 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTR 91
Query: 61 D 61
D
Sbjct: 92 D 92
>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase
(Pdh) Complex, Nmr, 1 Structure
Length = 106
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 48/61 (78%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +EEG LAKILVPE T
Sbjct: 14 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTR 73
Query: 61 D 61
D
Sbjct: 74 D 74
>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex
Length = 87
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 47/61 (77%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TD A + FE +EEG LAKILVPE T
Sbjct: 10 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTR 69
Query: 61 D 61
D
Sbjct: 70 D 70
>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of
Human 2-Oxoacid Dehydrogenase
Length = 108
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 45/61 (73%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+PSLSPTM GTI +W KKEGD + GD++ E++TDKA + FE+ EE +AKILV E T
Sbjct: 12 LPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTR 71
Query: 61 D 61
D
Sbjct: 72 D 72
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59
+P + + EG IVKW K GD V DVLCE+Q DKAV+ + +G + +ILVPE T
Sbjct: 7 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT 65
>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
pdb|1LAC|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
Length = 80
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+P + + EG IVKW K GD V DVLCE+Q DKAV+ + +G + +ILVPE T
Sbjct: 6 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 65
>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase
Component Of The 2-Oxoglutarate Dehydrogenase
Multienzyme Complex Of Escherichia Coli, Nmr, 25
Structures
Length = 80
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+P L ++ + T+ W KK GDAV +VL EI+TDK V+ +GIL +L E TT
Sbjct: 7 VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT 66
>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, Minimized Average Structure
pdb|1GHK|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, 25 Structures
Length = 79
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 2 PSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
P+ ++ +GT+ W KK G+AV +++ +I+TDK VM E +G++A+I+ E T
Sbjct: 7 PTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT 65
>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
pdb|1K8M|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
Length = 93
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 54
+ + + E T+ +W KEGD V+ D +CE+Q+DKA ++ + +G++ K+
Sbjct: 9 LSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLY 62
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From
Thermoplasma Acidophilum
Length = 77
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN 58
+P + +TEG IV+W KEGD V L E+ TDK + + G + KIL E
Sbjct: 6 LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREG 63
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQT 35
P+ G IVK L +EG V G L +I T
Sbjct: 48 PSPVRGKIVKILYREGQVVPVGSTLLQIDT 77
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55
G I + G AV GDVL I+ K + E++G +A++LV
Sbjct: 1104 GVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLV 1148
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55
G I + G AV GDVL I+ K + E++G +A++LV
Sbjct: 1104 GVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLV 1148
>pdb|1O78|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase
(1.3s) [10-48] Deletion Mutant
Length = 84
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN 58
P GT+ K L KEGD V G + ++ K +G + K+LV E
Sbjct: 19 PAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKER 71
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKI 53
G IVK + G V G LC I+ K E++G++AKI
Sbjct: 621 GLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKI 663
>pdb|1DCZ|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
pdb|1DD2|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
Length = 77
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN 58
P GT+ K L KEGD V G + ++ K +G + K+LV E
Sbjct: 12 PAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKER 64
>pdb|1C8N|A Chain A, Tobacco Necrosis Virus
pdb|1C8N|B Chain B, Tobacco Necrosis Virus
pdb|1C8N|C Chain C, Tobacco Necrosis Virus
Length = 276
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAV 39
PT T GT+ L + + VAPG + QT KA+
Sbjct: 146 PTTTSGTVAMCLSYDRNDVAPGSRVQLSQTYKAI 179
>pdb|3VR8|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 645
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLC 31
PT + ++K+ K+ GD + PG C
Sbjct: 394 PTNYKAQVIKYTKEGGDKIVPGLYAC 419
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,076,324
Number of Sequences: 62578
Number of extensions: 62056
Number of successful extensions: 111
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 31
length of query: 64
length of database: 14,973,337
effective HSP length: 35
effective length of query: 29
effective length of database: 12,783,107
effective search space: 370710103
effective search space used: 370710103
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)