Query psy10440
Match_columns 64
No_of_seqs 130 out of 1157
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 18:13:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00364 Biotin_lipoyl: Biotin 99.8 3.3E-19 7.2E-24 96.4 5.9 62 1-63 5-66 (74)
2 COG0508 AceF Pyruvate/2-oxoglu 99.8 7.5E-19 1.6E-23 119.0 8.6 63 1-64 7-69 (404)
3 PRK14875 acetoin dehydrogenase 99.8 3.4E-18 7.3E-23 111.1 9.4 63 1-64 7-69 (371)
4 PLN02226 2-oxoglutarate dehydr 99.7 1.5E-17 3.2E-22 114.3 9.0 63 1-64 96-158 (463)
5 PTZ00144 dihydrolipoamide succ 99.7 1.9E-17 4.1E-22 112.7 9.1 63 1-64 49-111 (418)
6 PRK05889 putative acetyl-CoA c 99.7 2.1E-16 4.5E-21 84.7 8.1 54 9-63 9-62 (71)
7 PRK06748 hypothetical protein; 99.7 2.4E-16 5.3E-21 87.2 8.5 55 9-64 11-66 (83)
8 PRK05704 dihydrolipoamide succ 99.7 1.5E-16 3.2E-21 107.9 9.1 63 1-64 7-69 (407)
9 cd06663 Biotinyl_lipoyl_domain 99.7 4.7E-16 1E-20 83.0 9.2 62 1-63 4-65 (73)
10 TIGR01347 sucB 2-oxoglutarate 99.7 2.9E-16 6.2E-21 106.5 9.2 63 1-64 5-67 (403)
11 KOG0557|consensus 99.7 2.2E-16 4.7E-21 108.0 6.4 64 1-64 43-106 (470)
12 TIGR02927 SucB_Actino 2-oxoglu 99.6 8.4E-16 1.8E-20 108.0 8.7 63 1-64 140-202 (590)
13 COG0511 AccB Biotin carboxyl c 99.6 2.2E-15 4.8E-20 90.0 6.8 55 8-63 76-130 (140)
14 TIGR01348 PDHac_trf_long pyruv 99.6 5.4E-15 1.2E-19 103.2 7.9 62 1-64 121-182 (546)
15 PRK11854 aceF pyruvate dehydro 99.6 5.4E-15 1.2E-19 104.5 7.9 61 1-64 211-271 (633)
16 PRK08225 acetyl-CoA carboxylas 99.6 1.6E-14 3.4E-19 76.9 7.9 54 9-63 8-61 (70)
17 PLN02744 dihydrolipoyllysine-r 99.6 7E-15 1.5E-19 102.6 8.3 64 1-64 117-180 (539)
18 PLN02528 2-oxoisovalerate dehy 99.6 1.4E-14 3.1E-19 98.5 9.3 63 1-64 3-65 (416)
19 PRK11855 dihydrolipoamide acet 99.6 1.2E-14 2.5E-19 101.3 8.3 62 1-64 124-185 (547)
20 PRK06549 acetyl-CoA carboxylas 99.5 5.3E-14 1.1E-18 83.4 8.0 54 9-63 68-121 (130)
21 PRK11856 branched-chain alpha- 99.5 7.5E-14 1.6E-18 94.3 9.2 62 1-63 7-68 (411)
22 PRK11854 aceF pyruvate dehydro 99.5 6.6E-14 1.4E-18 99.0 8.9 60 1-63 7-66 (633)
23 TIGR01349 PDHac_trf_mito pyruv 99.5 6.9E-14 1.5E-18 95.6 8.5 63 1-63 4-66 (435)
24 PRK05641 putative acetyl-CoA c 99.5 1.3E-13 2.7E-18 83.6 7.7 55 8-63 90-144 (153)
25 PRK11892 pyruvate dehydrogenas 99.5 1E-13 2.2E-18 95.4 8.3 64 1-64 7-70 (464)
26 TIGR02927 SucB_Actino 2-oxoglu 99.5 2E-13 4.4E-18 96.1 8.5 62 1-63 7-68 (590)
27 cd06850 biotinyl_domain The bi 99.5 8E-13 1.7E-17 68.5 8.4 51 9-59 6-56 (67)
28 KOG0559|consensus 99.5 1.7E-14 3.7E-19 97.1 1.5 62 1-63 77-138 (457)
29 PRK11855 dihydrolipoamide acet 99.4 7.8E-13 1.7E-17 92.3 9.1 61 1-63 7-67 (547)
30 PRK14042 pyruvate carboxylase 99.4 1.5E-12 3.2E-17 92.0 8.1 54 9-63 532-585 (596)
31 TIGR01348 PDHac_trf_long pyruv 99.4 2.1E-12 4.6E-17 90.3 8.7 61 1-63 5-65 (546)
32 PRK07051 hypothetical protein; 99.4 3.4E-12 7.3E-17 69.8 7.6 54 9-63 10-70 (80)
33 TIGR01108 oadA oxaloacetate de 99.4 2.6E-12 5.5E-17 90.5 8.4 55 8-63 523-577 (582)
34 TIGR00531 BCCP acetyl-CoA carb 99.4 2E-12 4.3E-17 78.5 6.9 53 10-63 88-147 (156)
35 PLN02983 biotin carboxyl carri 99.4 2.4E-12 5.3E-17 83.6 7.4 53 10-63 205-264 (274)
36 cd06849 lipoyl_domain Lipoyl d 99.4 2.7E-11 5.9E-16 62.2 9.2 60 1-60 5-64 (74)
37 PRK06302 acetyl-CoA carboxylas 99.3 5.9E-12 1.3E-16 76.3 7.3 53 10-63 87-146 (155)
38 TIGR02712 urea_carbox urea car 99.3 7.4E-12 1.6E-16 93.5 8.6 54 9-63 1139-1192(1201)
39 PRK14040 oxaloacetate decarbox 99.3 1.5E-11 3.2E-16 86.9 8.2 54 9-63 531-584 (593)
40 TIGR01235 pyruv_carbox pyruvat 99.3 1.4E-11 3E-16 91.8 7.8 54 9-63 1081-1134(1143)
41 PRK09282 pyruvate carboxylase 99.2 8.5E-11 1.8E-15 83.0 7.8 54 9-63 529-582 (592)
42 PRK12999 pyruvate carboxylase; 99.2 1.2E-10 2.5E-15 87.0 7.8 54 9-63 1083-1136(1146)
43 KOG0558|consensus 99.1 3E-11 6.5E-16 81.5 2.9 58 2-59 70-127 (474)
44 cd06848 GCS_H Glycine cleavage 99.1 2.9E-10 6.3E-15 63.9 6.1 49 11-59 29-78 (96)
45 COG4770 Acetyl/propionyl-CoA c 99.1 2.1E-10 4.7E-15 80.7 6.2 54 9-63 582-635 (645)
46 COG1038 PycA Pyruvate carboxyl 99.1 1.8E-10 4E-15 83.8 5.8 58 3-62 1081-1138(1149)
47 PRK13380 glycine cleavage syst 99.0 1E-09 2.2E-14 66.1 5.6 48 11-58 44-92 (144)
48 TIGR03077 not_gcvH glycine cle 99.0 1.3E-09 2.8E-14 63.0 5.4 48 11-58 30-78 (110)
49 PRK00624 glycine cleavage syst 98.9 3.6E-09 7.8E-14 61.6 6.1 46 11-56 32-78 (114)
50 TIGR00527 gcvH glycine cleavag 98.8 7E-09 1.5E-13 61.2 5.0 46 11-56 36-82 (127)
51 PRK01202 glycine cleavage syst 98.8 1.2E-08 2.5E-13 60.2 5.2 47 11-57 37-84 (127)
52 COG0509 GcvH Glycine cleavage 98.7 1.8E-08 3.9E-13 59.9 4.2 40 17-56 46-85 (131)
53 KOG0369|consensus 98.7 5.4E-08 1.2E-12 70.6 6.0 52 9-60 1113-1164(1176)
54 PF01597 GCV_H: Glycine cleava 98.7 8.9E-08 1.9E-12 56.0 5.8 45 11-55 31-76 (122)
55 PRK09783 copper/silver efflux 98.4 2.4E-06 5.1E-11 58.2 7.9 52 9-60 130-230 (409)
56 PRK09578 periplasmic multidrug 98.4 1.4E-06 3.1E-11 58.4 6.7 27 9-35 70-96 (385)
57 PRK15030 multidrug efflux syst 98.4 1.4E-06 3E-11 58.8 6.6 27 9-35 72-98 (397)
58 PRK10559 p-hydroxybenzoic acid 98.4 2E-06 4.4E-11 56.6 6.7 27 9-35 54-80 (310)
59 KOG0238|consensus 98.4 2.9E-07 6.3E-12 64.9 2.7 52 9-60 608-659 (670)
60 PRK09859 multidrug efflux syst 98.4 1.6E-06 3.5E-11 58.2 6.2 27 9-35 68-94 (385)
61 PF13533 Biotin_lipoyl_2: Biot 98.4 1.3E-06 2.8E-11 43.8 4.4 29 9-37 9-37 (50)
62 KOG0368|consensus 98.3 1.7E-06 3.8E-11 66.6 5.4 53 6-59 689-741 (2196)
63 TIGR00998 8a0101 efflux pump m 98.1 1.1E-05 2.3E-10 52.8 6.5 27 9-35 49-75 (334)
64 TIGR01730 RND_mfp RND family e 98.1 7.8E-06 1.7E-10 52.7 5.6 27 9-35 33-59 (322)
65 PRK11556 multidrug efflux syst 98.1 8.6E-06 1.9E-10 55.5 5.9 27 9-35 94-120 (415)
66 PRK11578 macrolide transporter 98.1 1.3E-05 2.9E-10 53.4 6.1 27 9-35 68-94 (370)
67 PRK10476 multidrug resistance 98.1 1.9E-05 4.1E-10 52.3 6.5 27 9-35 55-81 (346)
68 PF13375 RnfC_N: RnfC Barrel s 98.0 2.1E-05 4.5E-10 44.9 5.3 44 11-55 39-82 (101)
69 PRK03598 putative efflux pump 97.9 4.5E-05 9.8E-10 50.2 5.6 27 9-35 50-76 (331)
70 KOG3373|consensus 97.8 1.9E-05 4.2E-10 48.5 2.3 43 17-59 87-129 (172)
71 PRK08225 acetyl-CoA carboxylas 97.6 0.00015 3.4E-09 38.1 4.4 27 8-34 44-70 (70)
72 TIGR03309 matur_yqeB selenium- 97.6 0.00033 7.1E-09 45.8 6.5 40 10-54 172-211 (256)
73 PF05896 NQRA: Na(+)-transloca 97.5 0.00033 7.2E-09 45.8 5.4 47 10-57 37-83 (257)
74 PRK12784 hypothetical protein; 97.4 0.0011 2.5E-08 36.4 5.5 52 9-60 12-64 (84)
75 TIGR01936 nqrA NADH:ubiquinone 97.4 0.00067 1.4E-08 47.2 5.8 47 11-58 38-84 (447)
76 PF09891 DUF2118: Uncharacteri 97.3 0.00067 1.4E-08 41.3 4.9 49 10-58 88-137 (150)
77 PRK06748 hypothetical protein; 97.3 0.00089 1.9E-08 37.0 4.8 30 8-37 48-77 (83)
78 cd06252 M14_ASTE_ASPA_like_2 A 97.3 0.0024 5.3E-08 42.3 7.5 51 10-60 251-309 (316)
79 cd06251 M14_ASTE_ASPA_like_1 A 97.2 0.0025 5.5E-08 41.7 7.2 44 11-54 227-272 (287)
80 PRK05352 Na(+)-translocating N 97.2 0.00092 2E-08 46.5 5.2 44 11-55 39-82 (448)
81 PRK07051 hypothetical protein; 97.2 0.0012 2.7E-08 35.7 4.6 27 8-34 53-79 (80)
82 COG3608 Predicted deacylase [G 97.2 0.0013 2.9E-08 44.3 5.6 50 10-59 263-319 (331)
83 TIGR02971 heterocyst_DevB ABC 97.1 0.00061 1.3E-08 44.6 3.7 26 11-36 25-50 (327)
84 PF00529 HlyD: HlyD family sec 97.1 0.00047 1E-08 44.1 3.1 27 9-35 8-34 (305)
85 TIGR01945 rnfC electron transp 97.1 0.00095 2.1E-08 46.0 4.6 40 14-54 43-82 (435)
86 cd06253 M14_ASTE_ASPA_like_3 A 97.1 0.0037 8.1E-08 41.2 7.1 45 10-54 236-283 (298)
87 TIGR00999 8a0102 Membrane Fusi 97.1 0.0018 3.9E-08 40.9 5.4 21 40-60 89-109 (265)
88 cd06250 M14_PaAOTO_like An unc 97.0 0.0037 8.1E-08 42.3 6.6 45 10-54 296-344 (359)
89 cd06254 M14_ASTE_ASPA_like_4 A 97.0 0.006 1.3E-07 39.9 7.1 46 10-55 230-277 (288)
90 PRK05889 putative acetyl-CoA c 96.9 0.0025 5.5E-08 33.6 4.3 27 8-34 45-71 (71)
91 TIGR02994 ectoine_eutE ectoine 96.9 0.0065 1.4E-07 40.7 7.1 44 11-54 263-310 (325)
92 COG0511 AccB Biotin carboxyl c 96.9 0.0018 4E-08 38.6 3.7 27 8-34 113-139 (140)
93 PF12700 HlyD_2: HlyD family s 96.8 0.0018 3.9E-08 41.8 3.7 26 9-35 28-53 (328)
94 PF00364 Biotin_lipoyl: Biotin 96.8 0.0021 4.5E-08 34.3 3.3 25 9-33 50-74 (74)
95 PRK15136 multidrug efflux syst 96.8 0.0023 5.1E-08 43.4 4.1 27 9-35 68-94 (390)
96 cd06255 M14_ASTE_ASPA_like_5 A 96.7 0.011 2.3E-07 38.9 6.7 44 10-53 238-283 (293)
97 PF13533 Biotin_lipoyl_2: Biot 96.7 0.004 8.7E-08 31.0 3.5 24 39-63 2-25 (50)
98 COG1726 NqrA Na+-transporting 96.6 0.0039 8.5E-08 42.9 4.2 41 15-56 42-82 (447)
99 PRK05035 electron transport co 96.6 0.0047 1E-07 45.1 4.7 43 11-54 46-88 (695)
100 COG4656 RnfC Predicted NADH:ub 96.6 0.0031 6.8E-08 44.7 3.7 39 14-54 45-83 (529)
101 TIGR01843 type_I_hlyD type I s 96.5 0.0043 9.4E-08 41.4 4.0 30 9-38 50-79 (423)
102 TIGR03794 NHPM_micro_HlyD NHPM 96.5 0.006 1.3E-07 41.5 4.4 29 8-36 64-92 (421)
103 TIGR01000 bacteriocin_acc bact 96.2 0.0078 1.7E-07 41.5 4.1 29 8-36 65-93 (457)
104 PRK06549 acetyl-CoA carboxylas 96.2 0.011 2.4E-07 35.1 4.1 25 9-33 105-129 (130)
105 TIGR00531 BCCP acetyl-CoA carb 96.2 0.011 2.3E-07 35.9 3.9 27 8-34 130-156 (156)
106 PRK06302 acetyl-CoA carboxylas 96.1 0.013 2.8E-07 35.5 4.0 27 8-34 129-155 (155)
107 COG0845 AcrA Membrane-fusion p 95.8 0.016 3.5E-07 37.0 3.8 27 9-35 73-99 (372)
108 PF13437 HlyD_3: HlyD family s 95.7 0.052 1.1E-06 29.9 5.1 28 9-36 6-33 (105)
109 cd06850 biotinyl_domain The bi 95.6 0.033 7.1E-07 28.0 3.9 25 9-33 43-67 (67)
110 COG4072 Uncharacterized protei 95.5 0.056 1.2E-06 32.8 5.1 46 9-54 98-144 (161)
111 COG1566 EmrA Multidrug resista 95.5 0.028 6.1E-07 38.3 4.3 27 9-35 60-86 (352)
112 PLN02226 2-oxoglutarate dehydr 95.5 0.031 6.7E-07 39.3 4.4 29 8-36 140-168 (463)
113 PRK05641 putative acetyl-CoA c 95.4 0.04 8.6E-07 33.5 4.4 26 8-33 127-152 (153)
114 PLN02983 biotin carboxyl carri 95.4 0.031 6.8E-07 36.9 4.0 27 8-34 247-273 (274)
115 PF07831 PYNP_C: Pyrimidine nu 95.4 0.031 6.8E-07 30.1 3.4 29 9-37 29-57 (75)
116 PF02749 QRPTase_N: Quinolinat 95.1 0.03 6.6E-07 30.7 3.0 22 14-35 47-68 (88)
117 PRK14875 acetoin dehydrogenase 95.0 0.068 1.5E-06 34.8 4.7 29 9-37 52-80 (371)
118 cd06663 Biotinyl_lipoyl_domain 94.8 0.077 1.7E-06 27.5 3.9 25 9-33 49-73 (73)
119 PTZ00144 dihydrolipoamide succ 94.6 0.079 1.7E-06 36.8 4.4 29 8-36 93-121 (418)
120 PRK05704 dihydrolipoamide succ 94.3 0.11 2.3E-06 35.9 4.6 30 8-37 51-80 (407)
121 COG0508 AceF Pyruvate/2-oxoglu 94.0 0.14 2.9E-06 35.4 4.6 31 7-37 50-80 (404)
122 TIGR00830 PTBA PTS system, glu 94.0 0.07 1.5E-06 31.3 2.8 27 10-36 78-104 (121)
123 cd06849 lipoyl_domain Lipoyl d 93.9 0.13 2.8E-06 25.3 3.5 25 9-33 50-74 (74)
124 TIGR01347 sucB 2-oxoglutarate 93.9 0.14 3.1E-06 35.3 4.7 29 8-36 49-77 (403)
125 cd00210 PTS_IIA_glc PTS_IIA, P 93.8 0.085 1.8E-06 31.1 2.9 27 10-36 78-104 (124)
126 PRK14042 pyruvate carboxylase 93.7 0.16 3.6E-06 36.7 4.8 28 8-35 568-595 (596)
127 KOG0559|consensus 93.4 0.11 2.4E-06 36.0 3.3 29 8-36 121-149 (457)
128 PRK09282 pyruvate carboxylase 93.2 0.18 3.9E-06 36.4 4.3 27 8-34 565-591 (592)
129 PRK09439 PTS system glucose-sp 93.0 0.11 2.4E-06 32.1 2.7 26 10-35 100-125 (169)
130 PLN02528 2-oxoisovalerate dehy 93.0 0.25 5.5E-06 34.2 4.7 29 8-36 47-75 (416)
131 PF13437 HlyD_3: HlyD family s 92.6 0.17 3.8E-06 27.8 2.9 19 41-59 1-19 (105)
132 PF00358 PTS_EIIA_1: phosphoen 92.3 0.15 3.2E-06 30.3 2.4 28 10-37 82-109 (132)
133 PF04952 AstE_AspA: Succinylgl 91.8 0.62 1.3E-05 30.0 5.1 44 11-54 228-275 (292)
134 TIGR02712 urea_carbox urea car 91.6 0.34 7.4E-06 37.6 4.2 27 8-34 1175-1201(1201)
135 TIGR01235 pyruv_carbox pyruvat 91.4 0.4 8.7E-06 37.1 4.4 52 10-63 1046-1097(1143)
136 COG0157 NadC Nicotinate-nucleo 91.4 0.34 7.5E-06 32.2 3.6 25 12-36 64-88 (280)
137 COG2190 NagE Phosphotransferas 91.3 0.2 4.2E-06 30.8 2.3 27 10-36 85-111 (156)
138 TIGR01349 PDHac_trf_mito pyruv 91.3 0.54 1.2E-05 32.8 4.7 29 8-36 48-77 (435)
139 PRK02597 rpoC2 DNA-directed RN 91.1 0.5 1.1E-05 37.2 4.7 36 16-51 405-447 (1331)
140 TIGR00998 8a0101 efflux pump m 90.4 0.91 2E-05 29.6 5.0 27 9-35 211-237 (334)
141 PRK11892 pyruvate dehydrogenas 90.3 0.69 1.5E-05 32.6 4.5 29 8-36 51-80 (464)
142 PRK11856 branched-chain alpha- 90.0 0.91 2E-05 31.1 4.8 30 8-37 51-80 (411)
143 PRK14040 oxaloacetate decarbox 90.0 0.69 1.5E-05 33.5 4.4 25 9-33 568-592 (593)
144 TIGR01843 type_I_hlyD type I s 89.8 0.59 1.3E-05 31.2 3.7 30 32-62 36-65 (423)
145 PRK12784 hypothetical protein; 89.8 0.9 2E-05 25.0 3.8 28 10-37 51-78 (84)
146 TIGR02971 heterocyst_DevB ABC 89.3 0.64 1.4E-05 30.4 3.6 32 31-63 5-39 (327)
147 PRK12999 pyruvate carboxylase; 89.3 0.71 1.5E-05 35.8 4.2 26 9-34 1120-1145(1146)
148 PRK08072 nicotinate-nucleotide 89.1 0.69 1.5E-05 30.5 3.6 22 14-35 66-87 (277)
149 cd01572 QPRTase Quinolinate ph 89.0 0.72 1.6E-05 30.2 3.6 25 11-35 57-81 (268)
150 PRK03598 putative efflux pump 88.9 1.5 3.2E-05 28.9 5.1 27 9-35 210-236 (331)
151 PF01551 Peptidase_M23: Peptid 88.7 0.74 1.6E-05 25.0 3.1 24 13-36 52-75 (96)
152 PRK05742 nicotinate-nucleotide 87.8 0.96 2.1E-05 29.9 3.6 22 14-35 68-89 (277)
153 PRK06543 nicotinate-nucleotide 87.7 0.96 2.1E-05 30.0 3.6 23 13-35 66-88 (281)
154 cd01573 modD_like ModD; Quinol 87.7 0.99 2.1E-05 29.6 3.7 23 13-35 57-79 (272)
155 PRK06096 molybdenum transport 87.6 0.99 2.1E-05 30.0 3.6 23 13-35 62-84 (284)
156 PRK05848 nicotinate-nucleotide 87.5 1 2.2E-05 29.7 3.6 22 14-35 60-81 (273)
157 PRK11578 macrolide transporter 87.5 1.6 3.5E-05 29.2 4.7 31 31-63 54-84 (370)
158 TIGR00164 PS_decarb_rel phosph 87.4 2.4 5.3E-05 26.3 5.1 40 17-60 135-174 (189)
159 PRK09016 quinolinate phosphori 87.3 1 2.3E-05 30.1 3.6 22 14-35 87-108 (296)
160 PRK05305 phosphatidylserine de 87.2 2.3 5.1E-05 26.7 5.0 40 17-60 155-194 (206)
161 PLN02744 dihydrolipoyllysine-r 87.0 1.2 2.6E-05 32.1 4.0 27 8-34 161-188 (539)
162 TIGR00999 8a0102 Membrane Fusi 87.0 1.3 2.8E-05 27.8 3.8 27 9-35 95-121 (265)
163 CHL00117 rpoC2 RNA polymerase 87.0 1.3 2.8E-05 35.1 4.4 40 15-54 405-452 (1364)
164 cd01568 QPRTase_NadC Quinolina 86.8 1.2 2.5E-05 29.2 3.6 24 12-35 57-80 (269)
165 PRK07896 nicotinate-nucleotide 86.8 1.2 2.6E-05 29.7 3.6 23 13-35 77-99 (289)
166 PRK07428 nicotinate-nucleotide 86.7 1.2 2.6E-05 29.6 3.6 23 13-35 73-95 (288)
167 PRK06106 nicotinate-nucleotide 86.4 1.3 2.8E-05 29.5 3.6 24 12-35 70-93 (281)
168 PRK11556 multidrug efflux syst 86.2 1.7 3.7E-05 29.8 4.3 49 13-63 62-110 (415)
169 PRK06978 nicotinate-nucleotide 86.1 1.3 2.9E-05 29.6 3.6 23 13-35 83-105 (294)
170 PLN02716 nicotinate-nucleotide 86.0 1.3 2.9E-05 29.8 3.6 23 13-35 79-101 (308)
171 PRK08385 nicotinate-nucleotide 86.0 1.4 3E-05 29.2 3.6 23 13-35 59-81 (278)
172 PF00529 HlyD: HlyD family sec 85.9 0.71 1.5E-05 29.4 2.2 22 40-62 2-23 (305)
173 TIGR00078 nadC nicotinate-nucl 85.7 1.5 3.2E-05 28.7 3.6 22 14-35 56-77 (265)
174 TIGR01334 modD putative molybd 85.2 1.6 3.4E-05 28.9 3.6 23 13-35 61-83 (277)
175 PRK10476 multidrug resistance 85.2 1.2 2.5E-05 29.6 3.0 27 9-35 215-241 (346)
176 TIGR01995 PTS-II-ABC-beta PTS 85.1 0.86 1.9E-05 33.1 2.5 27 10-36 542-568 (610)
177 TIGR02643 T_phosphoryl thymidi 84.8 1.2 2.7E-05 31.3 3.1 27 9-35 377-403 (437)
178 PRK05820 deoA thymidine phosph 84.6 1.3 2.8E-05 31.2 3.1 27 9-35 378-404 (440)
179 TIGR01730 RND_mfp RND family e 84.2 2.5 5.4E-05 27.1 4.2 27 9-35 141-167 (322)
180 PRK09824 PTS system beta-gluco 84.0 1 2.2E-05 33.0 2.5 26 10-35 558-583 (627)
181 PRK10559 p-hydroxybenzoic acid 84.0 4.9 0.00011 26.6 5.5 26 9-34 161-186 (310)
182 PRK09783 copper/silver efflux 83.8 3.8 8.3E-05 28.1 5.1 27 9-35 216-242 (409)
183 PRK15136 multidrug efflux syst 83.8 2.3 4.9E-05 29.0 4.0 27 9-35 222-248 (390)
184 COG4770 Acetyl/propionyl-CoA c 83.8 1.7 3.6E-05 31.9 3.4 27 8-34 618-644 (645)
185 TIGR02645 ARCH_P_rylase putati 83.7 2 4.2E-05 30.8 3.7 28 9-36 444-471 (493)
186 TIGR02644 Y_phosphoryl pyrimid 83.5 2 4.4E-05 30.0 3.7 28 9-36 371-398 (405)
187 TIGR01000 bacteriocin_acc bact 83.3 2.8 6.1E-05 29.0 4.4 31 32-63 52-82 (457)
188 TIGR03794 NHPM_micro_HlyD NHPM 83.0 5 0.00011 27.4 5.5 27 9-35 260-286 (421)
189 PRK06078 pyrimidine-nucleoside 83.0 1.9 4.1E-05 30.4 3.4 29 9-37 373-401 (434)
190 PF12700 HlyD_2: HlyD family s 82.7 2.1 4.5E-05 27.6 3.3 29 31-63 15-43 (328)
191 TIGR02876 spore_yqfD sporulati 82.6 2.7 5.8E-05 28.9 4.0 44 9-52 193-243 (382)
192 PRK09578 periplasmic multidrug 82.5 3.7 8E-05 27.7 4.6 33 29-63 54-86 (385)
193 PRK09859 multidrug efflux syst 82.2 4 8.6E-05 27.6 4.7 45 17-63 40-84 (385)
194 PRK10255 PTS system N-acetyl g 81.8 1.3 2.9E-05 32.5 2.4 27 10-36 578-604 (648)
195 TIGR02388 rpoC2_cyan DNA-direc 81.2 3.4 7.4E-05 32.6 4.4 38 15-52 404-448 (1227)
196 PRK10871 nlpD lipoprotein NlpD 81.0 1.3 2.8E-05 30.0 1.9 23 14-36 270-292 (319)
197 PRK04350 thymidine phosphoryla 80.3 3.4 7.3E-05 29.6 3.9 29 8-36 435-463 (490)
198 COG1566 EmrA Multidrug resista 79.5 1.9 4.1E-05 29.5 2.4 22 39-60 208-229 (352)
199 TIGR03327 AMP_phos AMP phospho 79.5 3.6 7.9E-05 29.5 3.9 29 8-36 444-472 (500)
200 PRK06559 nicotinate-nucleotide 79.2 3.4 7.4E-05 27.6 3.5 24 12-35 71-96 (290)
201 PF06898 YqfD: Putative stage 79.2 3.4 7.4E-05 28.3 3.6 42 9-52 196-246 (385)
202 PRK14698 V-type ATP synthase s 78.4 13 0.00028 28.9 6.7 41 18-59 124-167 (1017)
203 cd06910 M14_ASTE_ASPA_like_7 A 78.2 5.1 0.00011 26.1 4.1 31 18-52 226-257 (272)
204 PRK14844 bifunctional DNA-dire 77.1 6.3 0.00014 33.7 4.9 44 14-59 2422-2465(2836)
205 PRK07188 nicotinate phosphorib 75.4 5.6 0.00012 27.2 3.8 24 12-35 71-94 (352)
206 cd01134 V_A-ATPase_A V/A-type 75.1 9.7 0.00021 26.4 4.9 42 17-59 54-98 (369)
207 COG1038 PycA Pyruvate carboxyl 74.7 3.4 7.4E-05 31.9 2.8 26 9-34 1123-1148(1149)
208 TIGR01108 oadA oxaloacetate de 74.3 3.6 7.9E-05 29.8 2.8 22 9-30 561-582 (582)
209 PRK15030 multidrug efflux syst 73.6 14 0.0003 25.2 5.3 25 9-33 180-206 (397)
210 COG1155 NtpA Archaeal/vacuolar 73.4 13 0.00029 27.2 5.3 43 18-60 122-166 (588)
211 PF02666 PS_Dcarbxylase: Phosp 73.2 12 0.00026 23.2 4.6 49 10-60 144-193 (202)
212 PRK08662 nicotinate phosphorib 72.7 5.1 0.00011 27.2 3.1 23 11-35 70-92 (343)
213 cd00516 PRTase_typeII Phosphor 72.2 7.2 0.00016 25.1 3.6 25 11-35 49-73 (281)
214 TIGR01042 V-ATPase_V1_A V-type 69.8 16 0.00035 26.9 5.2 37 17-53 123-162 (591)
215 KOG0557|consensus 68.9 5.3 0.00012 28.5 2.6 27 7-33 86-113 (470)
216 COG0739 NlpD Membrane proteins 68.0 4.8 0.00011 25.3 2.1 21 15-35 215-235 (277)
217 PRK11637 AmiB activator; Provi 67.2 4.9 0.00011 27.7 2.1 22 15-36 380-401 (428)
218 PRK05305 phosphatidylserine de 66.4 24 0.00052 22.1 5.0 20 40-59 92-111 (206)
219 COG0213 DeoA Thymidine phospho 65.7 10 0.00022 26.9 3.4 27 9-35 374-400 (435)
220 PRK11649 putative peptidase; P 63.4 6.6 0.00014 27.5 2.2 23 13-35 362-384 (439)
221 COG0845 AcrA Membrane-fusion p 62.2 21 0.00045 22.6 4.2 33 29-63 57-89 (372)
222 cd01571 NAPRTase_B Nicotinate 58.9 13 0.00027 24.8 2.9 23 11-35 53-75 (302)
223 KOG1668|consensus 56.2 8 0.00017 25.2 1.5 28 14-41 180-207 (231)
224 COG4942 Membrane-bound metallo 54.1 7 0.00015 27.5 1.1 25 12-36 369-393 (420)
225 PF01333 Apocytochr_F_C: Apocy 53.6 4.3 9.4E-05 23.8 -0.0 17 16-32 46-62 (118)
226 KOG0368|consensus 50.9 27 0.00058 29.1 3.7 38 23-60 669-706 (2196)
227 PRK14844 bifunctional DNA-dire 50.9 20 0.00044 30.9 3.2 37 15-51 2525-2583(2836)
228 PRK03934 phosphatidylserine de 50.2 8.2 0.00018 25.2 0.9 17 15-31 247-263 (265)
229 PRK02259 aspartoacylase; Provi 50.0 52 0.0011 21.6 4.6 37 17-54 231-269 (288)
230 KOG0369|consensus 49.3 21 0.00045 27.5 2.8 27 8-34 1149-1175(1176)
231 PRK03140 phosphatidylserine de 45.0 64 0.0014 21.0 4.4 34 11-47 202-235 (259)
232 PF01016 Ribosomal_L27: Riboso 43.2 48 0.001 18.2 3.1 42 14-56 20-71 (81)
233 PF03793 PASTA: PASTA domain; 43.0 20 0.00043 17.7 1.5 24 8-31 35-58 (63)
234 cd06577 PASTA_pknB PASTA domai 42.6 38 0.00083 15.7 2.7 22 9-30 36-57 (62)
235 PRK04192 V-type ATP synthase s 41.1 76 0.0017 23.5 4.6 37 17-53 123-162 (586)
236 KOG0238|consensus 41.1 24 0.00051 26.1 2.1 27 8-34 644-670 (670)
237 TIGR01043 ATP_syn_A_arch ATP s 40.8 71 0.0015 23.6 4.4 36 18-53 121-159 (578)
238 COG0688 Psd Phosphatidylserine 40.6 29 0.00063 22.5 2.3 21 39-59 124-144 (239)
239 TIGR00163 PS_decarb phosphatid 40.5 34 0.00073 22.0 2.6 21 39-59 96-116 (238)
240 COG1326 Uncharacterized archae 40.2 1E+02 0.0022 19.8 4.9 34 15-59 66-99 (201)
241 PF10011 DUF2254: Predicted me 36.6 49 0.0011 22.6 3.0 25 10-34 221-245 (371)
242 cd06575 PASTA_Pbp2x-like_2 PAS 36.0 48 0.0011 15.0 2.4 21 10-30 29-49 (54)
243 PRK02693 apocytochrome f; Revi 33.6 29 0.00064 23.5 1.5 18 15-32 239-256 (312)
244 smart00740 PASTA PASTA domain. 32.1 64 0.0014 15.2 2.5 22 9-30 39-60 (66)
245 CHL00037 petA cytochrome f 31.3 32 0.00069 23.5 1.4 17 15-31 247-263 (320)
246 KOG3008|consensus 29.1 74 0.0016 21.2 2.8 22 14-35 73-94 (300)
247 PRK00044 psd phosphatidylserin 27.0 77 0.0017 21.0 2.6 21 39-59 143-163 (288)
248 PLN02938 phosphatidylserine de 26.4 28 0.0006 24.7 0.5 22 13-34 405-426 (428)
249 CHL00121 rpl27 ribosomal prote 26.1 1.3E+02 0.0028 16.8 3.8 45 9-54 16-70 (86)
250 CHL00207 rpoB RNA polymerase b 25.8 51 0.0011 26.1 1.8 21 15-35 618-638 (1077)
251 COG4167 SapF ABC-type antimicr 24.0 59 0.0013 21.3 1.6 29 23-51 35-71 (267)
252 PF09923 DUF2155: Uncharacteri 23.7 1.4E+02 0.0031 16.5 3.4 49 9-57 9-57 (90)
253 cd06573 PASTA PASTA domain. Th 23.6 66 0.0014 14.5 1.5 18 13-30 32-49 (53)
254 cd01570 NAPRTase_A Nicotinate 23.5 1.1E+02 0.0023 20.6 2.9 20 16-35 90-109 (327)
255 TIGR00062 L27 ribosomal protei 22.7 1.5E+02 0.0033 16.4 3.7 46 9-55 16-71 (83)
256 COG2258 Uncharacterized protei 22.6 63 0.0014 20.8 1.6 33 3-35 80-112 (210)
257 TIGR00307 S8e ribosomal protei 22.2 1.9E+02 0.004 17.2 3.6 27 30-56 100-126 (127)
258 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 22.1 77 0.0017 16.5 1.6 12 39-50 23-34 (86)
259 TIGR02386 rpoC_TIGR DNA-direct 21.9 57 0.0012 26.0 1.4 18 15-32 967-984 (1140)
260 PF14382 ECR1_N: Exosome compl 20.8 1E+02 0.0022 14.3 1.7 29 24-52 2-37 (39)
261 PRK00723 phosphatidylserine de 20.7 95 0.0021 20.7 2.2 21 39-59 165-185 (297)
262 KOG3266|consensus 20.3 2.3E+02 0.0051 17.7 3.9 37 19-55 85-122 (172)
263 TIGR03670 rpoB_arch DNA-direct 20.1 3E+02 0.0065 20.5 4.7 38 18-55 277-332 (599)
No 1
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.79 E-value=3.3e-19 Score=96.35 Aligned_cols=62 Identities=48% Similarity=0.686 Sum_probs=58.3
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
+|.++....++++.+|++++|+.|++||+|+.+|++|+..+|+||.+|+|.++++++|+. |.
T Consensus 5 ~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~-V~ 66 (74)
T PF00364_consen 5 APMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDT-VE 66 (74)
T ss_dssp ESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEE-EE
T ss_pred CCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCE-EC
Confidence 588888888899999999999999999999999999999999999999999999999984 64
No 2
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=99.79 E-value=7.5e-19 Score=118.98 Aligned_cols=63 Identities=60% Similarity=0.878 Sum_probs=61.2
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v 64 (64)
||++++++.+|+|.+|++++||.|++||+|++||++|++.+|.||.+|+|.++++++|++ |+|
T Consensus 7 mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~-V~V 69 (404)
T COG0508 7 MPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDT-VPV 69 (404)
T ss_pred cCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCE-EcC
Confidence 799999999999999999999999999999999999999999999999999999999995 875
No 3
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.77 E-value=3.4e-18 Score=111.10 Aligned_cols=63 Identities=37% Similarity=0.587 Sum_probs=60.2
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v 64 (64)
||++++++++|+|++|++++||.|++||.|+++|+||+..+|+||.+|+|.++.+++|+ .|.+
T Consensus 7 ~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~-~v~~ 69 (371)
T PRK14875 7 MPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGE-TLPV 69 (371)
T ss_pred CCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCC-EeCC
Confidence 79999999999999999999999999999999999999999999999999999999998 4653
No 4
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.74 E-value=1.5e-17 Score=114.26 Aligned_cols=63 Identities=27% Similarity=0.579 Sum_probs=60.5
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v 64 (64)
||++++++.+|+|.+|++++||.|++||+|++||+||+..+|.||++|+|.++++++|+ .|++
T Consensus 96 mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd-~V~v 158 (463)
T PLN02226 96 VPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGD-TVEP 158 (463)
T ss_pred cCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCC-EecC
Confidence 69999999999999999999999999999999999999999999999999999999999 4764
No 5
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.74 E-value=1.9e-17 Score=112.66 Aligned_cols=63 Identities=35% Similarity=0.695 Sum_probs=60.3
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v 64 (64)
||++++++.+|+|.+|++++||.|++||+|+++|+||+..+|+||.+|+|.++++++|+ .|++
T Consensus 49 ~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~-~V~~ 111 (418)
T PTZ00144 49 VPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGD-TVEV 111 (418)
T ss_pred cCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCC-EecC
Confidence 79999999999999999999999999999999999999999999999999999999998 4653
No 6
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.70 E-value=2.1e-16 Score=84.67 Aligned_cols=54 Identities=20% Similarity=0.326 Sum_probs=50.9
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..|+|.+|++++||.|++||+|+.+|++|+..+|+||.+|+|.++++++|+. |.
T Consensus 9 ~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~-V~ 62 (71)
T PRK05889 9 IVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDV-IQ 62 (71)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCE-EC
Confidence 4599999999999999999999999999999999999999999999999983 54
No 7
>PRK06748 hypothetical protein; Validated
Probab=99.70 E-value=2.4e-16 Score=87.25 Aligned_cols=55 Identities=22% Similarity=0.208 Sum_probs=51.3
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec-CceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT-DKAVMSFETEEEGILAKILVPENTTDGKV 64 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~-~k~~~~i~ap~~G~i~~~~~~~g~~~v~v 64 (64)
..|+|.+|++++||.|++||+|+++|+ +|+..++.||.+|+|.++++++|++ |++
T Consensus 11 ~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~-V~v 66 (83)
T PRK06748 11 CYGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQA-IAD 66 (83)
T ss_pred CcEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCE-ECC
Confidence 469999999999999999999999999 8899999999999999999999994 653
No 8
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.70 E-value=1.5e-16 Score=107.92 Aligned_cols=63 Identities=43% Similarity=0.682 Sum_probs=60.3
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v 64 (64)
||+++.++.+|+|.+|++++||.|++||.|+++|++|+..+|.||.+|+|.++++++|+ .|++
T Consensus 7 ~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~-~V~~ 69 (407)
T PRK05704 7 VPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGD-TVTV 69 (407)
T ss_pred cCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCC-EeCC
Confidence 79999999999999999999999999999999999999999999999999999999998 4654
No 9
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.69 E-value=4.7e-16 Score=82.98 Aligned_cols=62 Identities=45% Similarity=0.728 Sum_probs=57.4
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
+|.++.+..+|++.+|++++|+.|++||.|+.+|++|+..+++||++|+|.+++++.|+. ++
T Consensus 4 ~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~-v~ 65 (73)
T cd06663 4 IPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK-VE 65 (73)
T ss_pred cCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCE-EC
Confidence 578888778999999999999999999999999999999999999999999999999973 53
No 10
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=99.68 E-value=2.9e-16 Score=106.46 Aligned_cols=63 Identities=37% Similarity=0.659 Sum_probs=60.5
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v 64 (64)
||++++++.+|+|.+|++++||.|++||.|+++|++|+..++.||.+|+|.++++++|+ .|++
T Consensus 5 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~-~v~v 67 (403)
T TIGR01347 5 VPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGD-TVES 67 (403)
T ss_pred cCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCC-EeCC
Confidence 79999999999999999999999999999999999999999999999999999999998 4764
No 11
>KOG0557|consensus
Probab=99.66 E-value=2.2e-16 Score=107.99 Aligned_cols=64 Identities=58% Similarity=0.929 Sum_probs=62.5
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v 64 (64)
||.++.+|++|.|++|..++||.+.+||.||+||++|+++++.+..+|++-+|++.+|.++|+|
T Consensus 43 MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpV 106 (470)
T KOG0557|consen 43 MPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPV 106 (470)
T ss_pred cCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccC
Confidence 8999999999999999999999999999999999999999999999999999999999888986
No 12
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.65 E-value=8.4e-16 Score=107.98 Aligned_cols=63 Identities=35% Similarity=0.582 Sum_probs=60.3
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v 64 (64)
||+++.++.+|+|.+|++++||.|++||.|+++|++|+..+|.||++|+|.++++++|+ .|++
T Consensus 140 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~-~v~v 202 (590)
T TIGR02927 140 MPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDD-TVDV 202 (590)
T ss_pred cCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCC-EecC
Confidence 79999999999999999999999999999999999999999999999999999999998 4764
No 13
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.61 E-value=2.2e-15 Score=89.96 Aligned_cols=55 Identities=27% Similarity=0.361 Sum_probs=51.4
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
-..|++.+.+|++||+|++||.||+||+||+..+|.||.+|+|.++++++|+ .|.
T Consensus 76 Pm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~-~Ve 130 (140)
T COG0511 76 PMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGD-PVE 130 (140)
T ss_pred CcceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCC-ccC
Confidence 3469999999999999999999999999999999999999999999999999 353
No 14
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.59 E-value=5.4e-15 Score=103.20 Aligned_cols=62 Identities=23% Similarity=0.392 Sum_probs=59.2
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v 64 (64)
||+++. +.+|+|.+|++++||.|++||.|+++|++|+..+|.||++|+|.++++++|+ .|++
T Consensus 121 ~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~-~v~v 182 (546)
T TIGR01348 121 VPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGD-SVPT 182 (546)
T ss_pred CCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCC-EecC
Confidence 799998 9999999999999999999999999999999999999999999999999998 4764
No 15
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.59 E-value=5.4e-15 Score=104.47 Aligned_cols=61 Identities=25% Similarity=0.304 Sum_probs=57.9
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v 64 (64)
||+++ +.+|+|.+|++++||.|++||.|+++|++|+..+|.||++|+|.++++++|+ .|++
T Consensus 211 ~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~-~v~~ 271 (633)
T PRK11854 211 VPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGD-KVKT 271 (633)
T ss_pred cCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCC-EecC
Confidence 68899 7899999999999999999999999999999999999999999999999998 4764
No 16
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.59 E-value=1.6e-14 Score=76.94 Aligned_cols=54 Identities=28% Similarity=0.346 Sum_probs=50.7
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..|+|.+|++++|+.|++||+|+.+|++|+..++.||.+|+|.++++++|+. |.
T Consensus 8 ~~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~-V~ 61 (70)
T PRK08225 8 MAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDF-VN 61 (70)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCE-EC
Confidence 4599999999999999999999999999999999999999999999999984 53
No 17
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=99.59 E-value=7e-15 Score=102.65 Aligned_cols=64 Identities=63% Similarity=1.007 Sum_probs=60.3
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v 64 (64)
||+++.++.+|+|.+|++++||.|++||.|+++|++|+..++.||.+|+|.++++++|+..|+|
T Consensus 117 mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~v 180 (539)
T PLN02744 117 MPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKV 180 (539)
T ss_pred CCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCC
Confidence 6999999999999999999999999999999999999999999999999999999999634654
No 18
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=99.59 E-value=1.4e-14 Score=98.51 Aligned_cols=63 Identities=30% Similarity=0.497 Sum_probs=59.8
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v 64 (64)
||++++++.+|+|.+|++++||.|++||+|+++|++|+..++.||.+|+|.++++++|+ .+++
T Consensus 3 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~-~v~v 65 (416)
T PLN02528 3 LAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGD-IVKV 65 (416)
T ss_pred CCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCC-EeCC
Confidence 69999999999999999999999999999999999999999999999999999999998 4653
No 19
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.57 E-value=1.2e-14 Score=101.33 Aligned_cols=62 Identities=31% Similarity=0.529 Sum_probs=58.9
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v 64 (64)
||+++. +.+|+|.+|++++||.|++||.|+++|++|+..+|+||++|+|.++++++|+ .|++
T Consensus 124 ~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~-~v~~ 185 (547)
T PRK11855 124 VPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGD-KVSV 185 (547)
T ss_pred cCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCC-EecC
Confidence 699999 9999999999999999999999999999999999999999999999999998 4653
No 20
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.54 E-value=5.3e-14 Score=83.39 Aligned_cols=54 Identities=24% Similarity=0.249 Sum_probs=51.0
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..|+|.+|++++||.|++||.|+.+|+||+..+|.||++|+|.++++++|+. |.
T Consensus 68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~ 121 (130)
T PRK06549 68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQV-VN 121 (130)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCE-eC
Confidence 4699999999999999999999999999999999999999999999999984 53
No 21
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=99.53 E-value=7.5e-14 Score=94.34 Aligned_cols=62 Identities=45% Similarity=0.693 Sum_probs=59.4
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
||+++.++.+|+|.+|++++|+.|.+||.|+++|++|+..++.||++|+|.++++++|+. |+
T Consensus 7 ~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~-v~ 68 (411)
T PRK11856 7 MPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDV-VP 68 (411)
T ss_pred cCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCE-eC
Confidence 699999999999999999999999999999999999999999999999999999999983 54
No 22
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.53 E-value=6.6e-14 Score=99.02 Aligned_cols=60 Identities=25% Similarity=0.383 Sum_probs=57.1
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
||+++ +.+|+|.+|++++||.|++||+|+++|+||+..+|+||.+|+|.++++++|+ .|.
T Consensus 7 ~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~-~V~ 66 (633)
T PRK11854 7 VPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGD-KVE 66 (633)
T ss_pred eCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCC-EEe
Confidence 68999 8899999999999999999999999999999999999999999999999998 465
No 23
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=99.52 E-value=6.9e-14 Score=95.61 Aligned_cols=63 Identities=70% Similarity=1.068 Sum_probs=59.6
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
||+++.++.+|+|.+|++++||.|+.||.|+++|++|+..++.||.+|++.++++++|+..|+
T Consensus 4 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~ 66 (435)
T TIGR01349 4 MPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVP 66 (435)
T ss_pred cCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEec
Confidence 799999999999999999999999999999999999999999999999999999999983154
No 24
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.51 E-value=1.3e-13 Score=83.63 Aligned_cols=55 Identities=29% Similarity=0.395 Sum_probs=51.3
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
-..|+|.+|++++||.|++||.|+.+|+||+..+|.||.+|+|.+++++.|+. |.
T Consensus 90 p~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~ 144 (153)
T PRK05641 90 PMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDT-VD 144 (153)
T ss_pred CCCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCE-EC
Confidence 34699999999999999999999999999999999999999999999999983 53
No 25
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.51 E-value=1e-13 Score=95.45 Aligned_cols=64 Identities=66% Similarity=0.992 Sum_probs=60.0
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v 64 (64)
||.++.++++|+|.+|++++||.|++||.|+++|++|++.++.||.+|++.++++++|+..|++
T Consensus 7 mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~v 70 (464)
T PRK11892 7 MPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKV 70 (464)
T ss_pred cCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCC
Confidence 6999999999999999999999999999999999999999999999999999999999634653
No 26
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.48 E-value=2e-13 Score=96.07 Aligned_cols=62 Identities=37% Similarity=0.616 Sum_probs=59.3
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
||+++.++.+|+|.+|++++||.|+.||.|+++|++|+..++.||.+|+|.++++++|+ .|+
T Consensus 7 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd-~v~ 68 (590)
T TIGR02927 7 MPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDD-TVD 68 (590)
T ss_pred CCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCC-EEe
Confidence 69999999999999999999999999999999999999999999999999999999998 454
No 27
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.48 E-value=8e-13 Score=68.49 Aligned_cols=51 Identities=35% Similarity=0.479 Sum_probs=48.8
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~ 59 (64)
..|++.+|+++.|+.|++||.|+.+++++...+++||.+|+|..+++..|+
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~ 56 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGD 56 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCC
Confidence 469999999999999999999999999999999999999999999999887
No 28
>KOG0559|consensus
Probab=99.46 E-value=1.7e-14 Score=97.09 Aligned_cols=62 Identities=32% Similarity=0.665 Sum_probs=59.6
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
+|.+++++.+|.|.+|+++.||.|++++.+++||++|.+.+|.||.+|+|.++++++|++ |.
T Consensus 77 vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdt-V~ 138 (457)
T KOG0559|consen 77 VPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDT-VT 138 (457)
T ss_pred cCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCc-cc
Confidence 589999999999999999999999999999999999999999999999999999999994 64
No 29
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.45 E-value=7.8e-13 Score=92.27 Aligned_cols=61 Identities=31% Similarity=0.554 Sum_probs=57.8
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
||+++. +.+|+|.+|++++||.|++||.|+++|++|+...+.||.+|+|.++++++|+. |.
T Consensus 7 ~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~-V~ 67 (547)
T PRK11855 7 VPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDT-VS 67 (547)
T ss_pred cCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCE-ec
Confidence 589999 99999999999999999999999999999999999999999999999999983 53
No 30
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.40 E-value=1.5e-12 Score=91.95 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=51.1
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..|+|.+|+|++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+. |.
T Consensus 532 m~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~-V~ 585 (596)
T PRK14042 532 IPGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDK-VT 585 (596)
T ss_pred cceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCE-EC
Confidence 3699999999999999999999999999999999999999999999999984 64
No 31
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.40 E-value=2.1e-12 Score=90.29 Aligned_cols=61 Identities=30% Similarity=0.492 Sum_probs=57.2
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
||+++.. .+|+|.+|++++||.|++||.|+++|++|+...|.|+.+|+|.++++++|+ .|.
T Consensus 5 ~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd-~V~ 65 (546)
T TIGR01348 5 VPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGD-TLP 65 (546)
T ss_pred cCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCC-EEe
Confidence 6899976 889999999999999999999999999999999999999999999999998 354
No 32
>PRK07051 hypothetical protein; Validated
Probab=99.40 E-value=3.4e-12 Score=69.76 Aligned_cols=54 Identities=31% Similarity=0.393 Sum_probs=50.2
Q ss_pred CeEEEEE-------EEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 9 TEGTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 9 ~~g~i~~-------w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..|++.+ |++++|+.|++||.++.+|++|+..+|+||.+|+|.++++++|+. |.
T Consensus 10 ~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~-V~ 70 (80)
T PRK07051 10 LPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEP-VE 70 (80)
T ss_pred CceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCE-EC
Confidence 4588989 999999999999999999999999999999999999999999983 53
No 33
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.38 E-value=2.6e-12 Score=90.54 Aligned_cols=55 Identities=29% Similarity=0.360 Sum_probs=51.7
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
...|+|.+|++++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+. |.
T Consensus 523 p~~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~-V~ 577 (582)
T TIGR01108 523 PIAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDA-VS 577 (582)
T ss_pred CccEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eC
Confidence 34699999999999999999999999999999999999999999999999984 64
No 34
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.38 E-value=2e-12 Score=78.49 Aligned_cols=53 Identities=26% Similarity=0.421 Sum_probs=49.0
Q ss_pred eEEEEE-------EEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 10 EGTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 10 ~g~i~~-------w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
.|++.+ |++++||.|++||.||.||+||+..+|.||.+|+|.+++++.|+ .|.
T Consensus 88 ~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~-~V~ 147 (156)
T TIGR00531 88 VGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQ-PVE 147 (156)
T ss_pred CEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCC-EEC
Confidence 477776 99999999999999999999999999999999999999999998 353
No 35
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.38 E-value=2.4e-12 Score=83.62 Aligned_cols=53 Identities=28% Similarity=0.473 Sum_probs=49.7
Q ss_pred eEEEEE-------EEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 10 EGTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 10 ~g~i~~-------w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
.|++.+ |++++||.|++||.|+.||+||+..+|+||.+|+|.++++++|+ .|.
T Consensus 205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD-~V~ 264 (274)
T PLN02983 205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGK-PVS 264 (274)
T ss_pred CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCC-EeC
Confidence 588888 99999999999999999999999999999999999999999998 354
No 36
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.35 E-value=2.7e-11 Score=62.17 Aligned_cols=60 Identities=60% Similarity=0.928 Sum_probs=56.4
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~ 60 (64)
+|+++.+..+|++.+|++..|+.+..|+.++.++++++...+.+|.+|++.+.+..+|+.
T Consensus 5 ~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~ 64 (74)
T cd06849 5 MPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDT 64 (74)
T ss_pred CCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCE
Confidence 578888889999999999999999999999999999999999999999999999988873
No 37
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.35 E-value=5.9e-12 Score=76.32 Aligned_cols=53 Identities=28% Similarity=0.487 Sum_probs=48.5
Q ss_pred eEEEEE-------EEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 10 EGTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 10 ~g~i~~-------w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
-|++.. |+++.||.|++||.||.+|+||+..+|+||.+|+|.+++++.|+ .|.
T Consensus 87 ~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~-~V~ 146 (155)
T PRK06302 87 VGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQ-PVE 146 (155)
T ss_pred CEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCC-EeC
Confidence 467665 99999999999999999999999999999999999999999998 353
No 38
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.33 E-value=7.4e-12 Score=93.51 Aligned_cols=54 Identities=26% Similarity=0.295 Sum_probs=51.2
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..|+|.+|++++||.|++||.|+++|+||+..+|.||.+|+|.++++++|+. |.
T Consensus 1139 ~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~-V~ 1192 (1201)
T TIGR02712 1139 YAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDM-VD 1192 (1201)
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCE-eC
Confidence 4699999999999999999999999999999999999999999999999984 64
No 39
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.30 E-value=1.5e-11 Score=86.92 Aligned_cols=54 Identities=30% Similarity=0.383 Sum_probs=50.9
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..|+|.+|++++||.|++||+|+.+|+||+..+|.||.+|+|.++++++|+. |.
T Consensus 531 ~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~-V~ 584 (593)
T PRK14040 531 LAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDA-VA 584 (593)
T ss_pred ccEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCE-EC
Confidence 3699999999999999999999999999999999999999999999999984 54
No 40
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.29 E-value=1.4e-11 Score=91.81 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=51.2
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..|+|.+|++++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+. |.
T Consensus 1081 ~~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~-V~ 1134 (1143)
T TIGR01235 1081 MPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQ-ID 1134 (1143)
T ss_pred CCcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCE-EC
Confidence 4699999999999999999999999999999999999999999999999984 64
No 41
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=99.20 E-value=8.5e-11 Score=83.04 Aligned_cols=54 Identities=31% Similarity=0.415 Sum_probs=50.9
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..|+|.+|++++||.|++||.|+.+|++|+..+|+||.+|+|.++++++|+. |.
T Consensus 529 ~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~-V~ 582 (592)
T PRK09282 529 MPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDR-VN 582 (592)
T ss_pred CcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCE-eC
Confidence 4699999999999999999999999999999999999999999999999983 53
No 42
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.17 E-value=1.2e-10 Score=86.97 Aligned_cols=54 Identities=30% Similarity=0.444 Sum_probs=50.9
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..|+|.+|++++||.|++||.|+.+|+||+..+|+||.+|+|.++++++|+. |.
T Consensus 1083 m~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~-V~ 1136 (1146)
T PRK12999 1083 MPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQ-VE 1136 (1146)
T ss_pred ceEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCE-EC
Confidence 4699999999999999999999999999999999999999999999999984 53
No 43
>KOG0558|consensus
Probab=99.13 E-value=3e-11 Score=81.49 Aligned_cols=58 Identities=33% Similarity=0.575 Sum_probs=55.4
Q ss_pred CCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440 2 PSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59 (64)
Q Consensus 2 p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~ 59 (64)
.++|+++.+.++.+|+|++||+|.+-|.||++.++|++++|.+.++|.|.+++.+.++
T Consensus 70 sdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~dd 127 (474)
T KOG0558|consen 70 SDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDD 127 (474)
T ss_pred hhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchh
Confidence 5788999999999999999999999999999999999999999999999999988876
No 44
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=99.12 E-value=2.9e-10 Score=63.85 Aligned_cols=49 Identities=22% Similarity=0.235 Sum_probs=43.8
Q ss_pred EEEEE-EEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440 11 GTIVK-WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59 (64)
Q Consensus 11 g~i~~-w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~ 59 (64)
|+|.. |+++.|+.|++|+.++.||++|+..+++||.+|+|++++.+..+
T Consensus 29 G~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~ 78 (96)
T cd06848 29 GDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLD 78 (96)
T ss_pred CCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhc
Confidence 66777 66677999999999999999999999999999999999877665
No 45
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=99.10 E-value=2.1e-10 Score=80.75 Aligned_cols=54 Identities=30% Similarity=0.456 Sum_probs=51.0
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
.+|+|+.+.|++|++|.+||.|+.+|+|||...|+||.+|+|.++.+.+|+. |.
T Consensus 582 MpG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~-V~ 635 (645)
T COG4770 582 MPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQ-VA 635 (645)
T ss_pred CCceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCc-cc
Confidence 4699999999999999999999999999999999999999999999999994 53
No 46
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.10 E-value=1.8e-10 Score=83.84 Aligned_cols=58 Identities=28% Similarity=0.416 Sum_probs=52.9
Q ss_pred CCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccc
Q psy10440 3 SLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDG 62 (64)
Q Consensus 3 ~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v 62 (64)
+++..| .|.|+++.|..|+.|++||+|+.+|+||++..|.||++|+|.++++..|+. +
T Consensus 1081 higApm-pG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~-i 1138 (1149)
T COG1038 1081 HIGAPM-PGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQ-I 1138 (1149)
T ss_pred ccCCCC-CCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCc-c
Confidence 345554 599999999999999999999999999999999999999999999999984 5
No 47
>PRK13380 glycine cleavage system protein H; Provisional
Probab=99.01 E-value=1e-09 Score=66.05 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=43.1
Q ss_pred EEEEEEEcC-CCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCC
Q psy10440 11 GTIVKWLKK-EGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN 58 (64)
Q Consensus 11 g~i~~w~v~-~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g 58 (64)
|.|..+.+. .|++|++||+++.||++|+..+|+||++|+|++++..--
T Consensus 44 G~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~ 92 (144)
T PRK13380 44 GDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALE 92 (144)
T ss_pred CCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhh
Confidence 678888776 899999999999999999999999999999999876543
No 48
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=98.99 E-value=1.3e-09 Score=63.03 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=40.0
Q ss_pred EEEEEEEc-CCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCC
Q psy10440 11 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN 58 (64)
Q Consensus 11 g~i~~w~v-~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g 58 (64)
|.|..+.. +.|+.|++||++++||++|+..+|+||++|+|++++....
T Consensus 30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~ 78 (110)
T TIGR03077 30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALE 78 (110)
T ss_pred CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhh
Confidence 44444443 6699999999999999999999999999999999865443
No 49
>PRK00624 glycine cleavage system protein H; Provisional
Probab=98.95 E-value=3.6e-09 Score=61.56 Aligned_cols=46 Identities=17% Similarity=0.280 Sum_probs=39.0
Q ss_pred EEEEEEEc-CCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecC
Q psy10440 11 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 56 (64)
Q Consensus 11 g~i~~w~v-~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~ 56 (64)
|.|..+.. +.|+.|++||.|++||++|+..+|+||++|+|++++-.
T Consensus 32 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~ 78 (114)
T PRK00624 32 GNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTA 78 (114)
T ss_pred CCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHH
Confidence 44555444 66999999999999999999999999999999998543
No 50
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=98.85 E-value=7e-09 Score=61.16 Aligned_cols=46 Identities=22% Similarity=0.280 Sum_probs=38.9
Q ss_pred EEEEEE-EcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecC
Q psy10440 11 GTIVKW-LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 56 (64)
Q Consensus 11 g~i~~w-~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~ 56 (64)
|.|..+ +.+.|++|++||.++.||++|+..+|+||++|+|++++-.
T Consensus 36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~ 82 (127)
T TIGR00527 36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDA 82 (127)
T ss_pred CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHh
Confidence 444444 3467999999999999999999999999999999998644
No 51
>PRK01202 glycine cleavage system protein H; Provisional
Probab=98.82 E-value=1.2e-08 Score=60.22 Aligned_cols=47 Identities=21% Similarity=0.240 Sum_probs=39.2
Q ss_pred EEEEEEE-cCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCC
Q psy10440 11 GTIVKWL-KKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 57 (64)
Q Consensus 11 g~i~~w~-v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~ 57 (64)
|.|..+. .+.|++|++||+++.||++|+..+|+||++|+|++++.+.
T Consensus 37 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l 84 (127)
T PRK01202 37 GDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEAL 84 (127)
T ss_pred CCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHh
Confidence 4444443 3579999999999999999999999999999999985443
No 52
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=98.73 E-value=1.8e-08 Score=59.86 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=36.8
Q ss_pred EcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecC
Q psy10440 17 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 56 (64)
Q Consensus 17 ~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~ 56 (64)
+.+.|+.|++|+.++.||+.|+..+|+||++|+|++++-.
T Consensus 46 lpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~ 85 (131)
T COG0509 46 LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEA 85 (131)
T ss_pred cCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechh
Confidence 4678999999999999999999999999999999998643
No 53
>KOG0369|consensus
Probab=98.68 E-value=5.4e-08 Score=70.61 Aligned_cols=52 Identities=27% Similarity=0.376 Sum_probs=49.6
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~ 60 (64)
..|+|+++.+.+|+.|++||+|+.+.+||+++-|.||.+|+++++++..|++
T Consensus 1113 MpG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~ 1164 (1176)
T KOG0369|consen 1113 MPGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTK 1164 (1176)
T ss_pred CCCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCc
Confidence 3599999999999999999999999999999999999999999999999874
No 54
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=98.67 E-value=8.9e-08 Score=56.05 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=34.5
Q ss_pred EEEEEEE-cCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEec
Q psy10440 11 GTIVKWL-KKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55 (64)
Q Consensus 11 g~i~~w~-v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~ 55 (64)
|.|..+. .+.|+.+++|++++.||+.|+..+++||++|+|++++-
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~ 76 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNE 76 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-G
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcc
Confidence 3344433 46699999999999999999999999999999999864
No 55
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=98.40 E-value=2.4e-06 Score=58.16 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=44.8
Q ss_pred CeEEEEEEE-cCCCCEEcCCCeEEEEecC------------------------------------------------ceE
Q psy10440 9 TEGTIVKWL-KKEGDAVAPGDVLCEIQTD------------------------------------------------KAV 39 (64)
Q Consensus 9 ~~g~i~~w~-v~~G~~V~~g~~l~~ie~~------------------------------------------------k~~ 39 (64)
..|.|.+++ +++||.|++||+|++|++. ...
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~ 209 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR 209 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 469999998 9999999999999999841 013
Q ss_pred EEEecCCCeEEEEEecCCCCc
Q psy10440 40 MSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 40 ~~i~ap~~G~i~~~~~~~g~~ 60 (64)
..|+||++|+|.++.+.+|+.
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~~ 230 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGMN 230 (409)
T ss_pred EEEECCCCeEEEEEECCCCCE
Confidence 579999999999999999983
No 56
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=98.39 E-value=1.4e-06 Score=58.38 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=25.4
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|+|.++++++||.|++||.|+.|++
T Consensus 70 v~G~V~~v~v~~Gd~VkkGq~La~ld~ 96 (385)
T PRK09578 70 VAGIVTARTYEEGQEVKQGAVLFRIDP 96 (385)
T ss_pred CcEEEEEEECCCCCEEcCCCEEEEECC
Confidence 469999999999999999999999976
No 57
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=98.39 E-value=1.4e-06 Score=58.81 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=25.4
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.+|+|.++++++||.|++||.|+.|+.
T Consensus 72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~ 98 (397)
T PRK15030 72 VSGIILKRNFKEGSDIEAGVSLYQIDP 98 (397)
T ss_pred CcEEEEEEEcCCCCEecCCCEEEEECC
Confidence 469999999999999999999999986
No 58
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=98.36 E-value=2e-06 Score=56.60 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=25.5
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|.|.++++++||.|++||+|+.+++
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~ 80 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQ 80 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECc
Confidence 469999999999999999999999987
No 59
>KOG0238|consensus
Probab=98.36 E-value=2.9e-07 Score=64.93 Aligned_cols=52 Identities=27% Similarity=0.332 Sum_probs=49.6
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~ 60 (64)
..|.|.+++++.||.|.+||.++.+++||+...++||.+|++..+.++.|++
T Consensus 608 MpG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~ 659 (670)
T KOG0238|consen 608 MPGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGAT 659 (670)
T ss_pred CCCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcc
Confidence 3589999999999999999999999999999999999999999999999984
No 60
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=98.35 E-value=1.6e-06 Score=58.22 Aligned_cols=27 Identities=41% Similarity=0.537 Sum_probs=25.4
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|+|.++++++|+.|++||.|+.|++
T Consensus 68 v~G~V~~i~v~~G~~VkkGqvLa~ld~ 94 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDP 94 (385)
T ss_pred CcEEEEEEEcCCcCEecCCCEEEEECc
Confidence 469999999999999999999999986
No 61
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=98.35 E-value=1.3e-06 Score=43.85 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=26.4
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK 37 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k 37 (64)
..|+|.+|++++|+.|++||+|+.+++..
T Consensus 9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 9 VSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred CCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 46999999999999999999999998743
No 62
>KOG0368|consensus
Probab=98.27 E-value=1.7e-06 Score=66.56 Aligned_cols=53 Identities=25% Similarity=0.496 Sum_probs=49.5
Q ss_pred CCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59 (64)
Q Consensus 6 ~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~ 59 (64)
.+...|++++|+|+.|+.|.+||.-+++|.||+.+++.|+.+|+| +...++|+
T Consensus 689 rsPs~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~ 741 (2196)
T KOG0368|consen 689 RSPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGD 741 (2196)
T ss_pred cCCCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCC
Confidence 455689999999999999999999999999999999999999999 78888887
No 63
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=98.15 E-value=1.1e-05 Score=52.79 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=25.4
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|.|.++++++|+.|++||+|+.+++
T Consensus 49 ~~G~V~~i~v~~G~~V~kGq~L~~ld~ 75 (334)
T TIGR00998 49 VSGSVIEVNVDDTDYVKQGDVLVRLDP 75 (334)
T ss_pred CceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 469999999999999999999999976
No 64
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=98.13 E-value=7.8e-06 Score=52.65 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=25.1
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|+|.++++++|+.|++||+|+.+++
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~ 59 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDD 59 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECC
Confidence 469999999999999999999999975
No 65
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=98.12 E-value=8.6e-06 Score=55.48 Aligned_cols=27 Identities=33% Similarity=0.609 Sum_probs=25.3
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|+|.++++++|+.|++||.|+.|++
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~ 120 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDP 120 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECc
Confidence 469999999999999999999999975
No 66
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=98.08 E-value=1.3e-05 Score=53.41 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=25.3
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|.|.++++++|+.|++||.|+.+++
T Consensus 68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 68 VSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred cceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 469999999999999999999999986
No 67
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=98.06 E-value=1.9e-05 Score=52.31 Aligned_cols=27 Identities=37% Similarity=0.521 Sum_probs=25.4
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|.|.++++++|+.|++||+|+.|++
T Consensus 55 v~G~V~~v~V~~G~~VkkGq~L~~ld~ 81 (346)
T PRK10476 55 VGGRIVELAVTENQAVKKGDLLFRIDP 81 (346)
T ss_pred CceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 459999999999999999999999987
No 68
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=98.03 E-value=2.1e-05 Score=44.87 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=37.0
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEec
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~ 55 (64)
|.-.+-.|+.||.|++||.|+.-+. -....|.||.+|+|+.+.-
T Consensus 39 G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~ 82 (101)
T PF13375_consen 39 GAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEK 82 (101)
T ss_pred CCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEee
Confidence 3345678999999999999999875 4578999999999998753
No 69
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.87 E-value=4.5e-05 Score=50.18 Aligned_cols=27 Identities=37% Similarity=0.580 Sum_probs=25.1
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|+|.++++++||.|++||+|+.+++
T Consensus 50 ~~G~V~~i~v~~Gd~V~kG~~L~~ld~ 76 (331)
T PRK03598 50 VGGRLASLAVDEGDAVKAGQVLGELDA 76 (331)
T ss_pred cCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence 469999999999999999999999974
No 70
>KOG3373|consensus
Probab=97.76 E-value=1.9e-05 Score=48.52 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=38.8
Q ss_pred EcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440 17 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59 (64)
Q Consensus 17 ~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~ 59 (64)
+.+.|..|.+||.++.+|+-|+..+|++|++|+|++++.+-.+
T Consensus 87 LPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~E 129 (172)
T KOG3373|consen 87 LPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEE 129 (172)
T ss_pred cCCCCCccccCcceeeeeehhhhhhhhCcCCceEEEecccccc
Confidence 5588999999999999999999999999999999999865444
No 71
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=97.63 E-value=0.00015 Score=38.09 Aligned_cols=27 Identities=48% Similarity=0.597 Sum_probs=24.9
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
..+|+|.+|+++.|+.|..||+|+.||
T Consensus 44 ~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 44 EEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 357999999999999999999999986
No 72
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=97.62 E-value=0.00033 Score=45.78 Aligned_cols=40 Identities=25% Similarity=0.485 Sum_probs=33.6
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEe
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 54 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~ 54 (64)
.|.+ +..++.|+.|++||.|+.+++ .+|+||++|+|..+.
T Consensus 172 ~Gi~-~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGli 211 (256)
T TIGR03309 172 DGIV-TPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGLI 211 (256)
T ss_pred CeEE-eeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEEe
Confidence 3554 449999999999999999976 699999999996653
No 73
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=97.50 E-value=0.00033 Score=45.78 Aligned_cols=47 Identities=32% Similarity=0.372 Sum_probs=37.2
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCC
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 57 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~ 57 (64)
.|-.-+..|++||+|++||+|+.-... ....+.||.+|+|.+++.-+
T Consensus 37 ~g~~Pkm~VkeGD~Vk~Gq~LF~dK~~-p~v~ftsPvsG~V~~I~RG~ 83 (257)
T PF05896_consen 37 PGMKPKMLVKEGDRVKAGQPLFEDKKN-PGVKFTSPVSGTVKAINRGE 83 (257)
T ss_pred CCCCccEEeccCCEEeCCCeeEeeCCC-CCcEEecCCCeEEEEEecCC
Confidence 344578899999999999999983222 35679999999999987644
No 74
>PRK12784 hypothetical protein; Provisional
Probab=97.36 E-value=0.0011 Score=36.37 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=46.8
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCce-EEEEecCCCeEEEEEecCCCCc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKA-VMSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~-~~~i~ap~~G~i~~~~~~~g~~ 60 (64)
-.|++.++++.+++.|-+.+.|+.|+++.. ...|.--++|.|..+.+.+|+.
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~ 64 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQ 64 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCce
Confidence 469999999999999999999999998654 5568999999999999999984
No 75
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=97.35 E-value=0.00067 Score=47.22 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=38.3
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCC
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN 58 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g 58 (64)
|.-.+..|++||+|++||.|++-... ....+.||.+|+|+.+....|
T Consensus 38 G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~~~g 84 (447)
T TIGR01936 38 GMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINRGAK 84 (447)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEecCCC
Confidence 44567899999999999999986543 478999999999999854333
No 76
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=97.33 E-value=0.00067 Score=41.26 Aligned_cols=49 Identities=29% Similarity=0.289 Sum_probs=35.7
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEecCceE-EEEecCCCeEEEEEecCCC
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAV-MSFETEEEGILAKILVPEN 58 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~-~~i~ap~~G~i~~~~~~~g 58 (64)
+|..+-..+.+|+.|.+||.++-+-|.|.. ..++||.+|+|+-+.--++
T Consensus 88 eG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~p~ 137 (150)
T PF09891_consen 88 EGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEIPW 137 (150)
T ss_dssp ESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEETT
T ss_pred cceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEecCC
Confidence 466677889999999999999999999985 4699999999987764443
No 77
>PRK06748 hypothetical protein; Validated
Probab=97.30 E-value=0.00089 Score=37.03 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=26.8
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDK 37 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k 37 (64)
...|+|.++++++||.|..|+.|+.|+.+.
T Consensus 48 p~~G~v~~i~v~~Gd~V~vG~~la~I~~~~ 77 (83)
T PRK06748 48 GISGYIESLEVVEGQAIADQKLLITVRDDL 77 (83)
T ss_pred CCCEEEEEEEeCCCCEECCCCEEEEEECCe
Confidence 357999999999999999999999998653
No 78
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.27 E-value=0.0024 Score=42.30 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=41.3
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEecC----ceEEEEecCCCeEEEEEe----cCCCCc
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQTD----KAVMSFETEEEGILAKIL----VPENTT 60 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~----k~~~~i~ap~~G~i~~~~----~~~g~~ 60 (64)
.+-+....++.|+.|++||.|++|-.- ....+++||.+|+|.... +.+|+.
T Consensus 251 ~~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~~~~~v~~G~~ 309 (316)
T cd06252 251 HPGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARRPPGLVRRGDC 309 (316)
T ss_pred CCeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEeeCCCccCCCCE
Confidence 355778889999999999999998553 346789999999999876 555763
No 79
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.23 E-value=0.0025 Score=41.66 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=35.6
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEecC--ceEEEEecCCCeEEEEEe
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQTD--KAVMSFETEEEGILAKIL 54 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~~--k~~~~i~ap~~G~i~~~~ 54 (64)
+-+.+..++.|+.|++||.|+.+-.. ....+++||.+|+|..+.
T Consensus 227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~ 272 (287)
T cd06251 227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN 272 (287)
T ss_pred CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec
Confidence 34566799999999999999999652 335789999999997654
No 80
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=97.20 E-value=0.00092 Score=46.52 Aligned_cols=44 Identities=30% Similarity=0.345 Sum_probs=36.3
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEec
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~ 55 (64)
|.-.+..|++||+|++||.|+.-... ....+.||.+|+|+.+..
T Consensus 39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR 82 (448)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence 44456789999999999999975543 478999999999999953
No 81
>PRK07051 hypothetical protein; Validated
Probab=97.20 E-value=0.0012 Score=35.69 Aligned_cols=27 Identities=33% Similarity=0.708 Sum_probs=24.8
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
..+|+|.+|++++|+.|+.||.|+.++
T Consensus 53 ~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 53 EAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 357999999999999999999999985
No 82
>COG3608 Predicted deacylase [General function prediction only]
Probab=97.18 E-value=0.0013 Score=44.31 Aligned_cols=50 Identities=28% Similarity=0.431 Sum_probs=42.4
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEecC---ceEEEEecCCCeEEEEEe----cCCCC
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQTD---KAVMSFETEEEGILAKIL----VPENT 59 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~---k~~~~i~ap~~G~i~~~~----~~~g~ 59 (64)
.+-+++..++.||.|++||.|+.+-.. +...+|+|+.+|+|..++ +++|+
T Consensus 263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~~v~~Gd 319 (331)
T COG3608 263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLRLVQPGD 319 (331)
T ss_pred CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeeccccCCCC
Confidence 466899999999999999999999664 678899999999998763 55554
No 83
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=97.15 E-value=0.00061 Score=44.61 Aligned_cols=26 Identities=42% Similarity=0.620 Sum_probs=24.9
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
|+|.+++|++||.|++||+|+.|+..
T Consensus 25 G~V~~i~V~eG~~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 25 DRIKKLLVAEGDRVQAGQVLAELDSR 50 (327)
T ss_pred cEEEEEEccCCCEecCCcEEEEecCc
Confidence 99999999999999999999999874
No 84
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=97.14 E-value=0.00047 Score=44.08 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=20.3
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|.|.+++|++|+.|++||+|+.|+.
T Consensus 8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~ 34 (305)
T PF00529_consen 8 VGGIVTEILVKEGQRVKKGQVLARLDP 34 (305)
T ss_dssp S-EEEEEE-S-TTEEE-TTSECEEE--
T ss_pred CCeEEEEEEccCcCEEeCCCEEEEEEe
Confidence 469999999999999999999999985
No 85
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=97.12 E-value=0.00095 Score=46.03 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=34.5
Q ss_pred EEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEe
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 54 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~ 54 (64)
.+-.|++||+|+.||.|+..+. .....+.||.+|+|+++.
T Consensus 43 ~~~~V~~Gd~V~~Gq~i~~~~~-~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 43 AEPIVKVGDKVLKGQKIAKADG-FVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CceeeCCCCEECCCCEeccCCC-cceeeeecCCCeEEEEec
Confidence 4678999999999999999743 347899999999999985
No 86
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.10 E-value=0.0037 Score=41.23 Aligned_cols=45 Identities=29% Similarity=0.324 Sum_probs=37.4
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEec---CceEEEEecCCCeEEEEEe
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQT---DKAVMSFETEEEGILAKIL 54 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~---~k~~~~i~ap~~G~i~~~~ 54 (64)
.+-+....++.|+.|++||.|++|-. .....+++||.+|+|..+.
T Consensus 236 ~~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~ 283 (298)
T cd06253 236 TSGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR 283 (298)
T ss_pred CCeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee
Confidence 35567788999999999999999954 3347789999999998764
No 87
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=97.10 E-value=0.0018 Score=40.93 Aligned_cols=21 Identities=10% Similarity=0.127 Sum_probs=18.4
Q ss_pred EEEecCCCeEEEEEecCCCCc
Q psy10440 40 MSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 40 ~~i~ap~~G~i~~~~~~~g~~ 60 (64)
..|+||++|+|..+++.+|+.
T Consensus 89 ~~i~AP~dG~V~~~~~~~G~~ 109 (265)
T TIGR00999 89 VEVRSPFDGYITQKSVTLGDY 109 (265)
T ss_pred EEEECCCCeEEEEEEcCCCCE
Confidence 358999999999999999873
No 88
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=97.02 E-value=0.0037 Score=42.28 Aligned_cols=45 Identities=29% Similarity=0.423 Sum_probs=35.9
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEec----CceEEEEecCCCeEEEEEe
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQT----DKAVMSFETEEEGILAKIL 54 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~----~k~~~~i~ap~~G~i~~~~ 54 (64)
.+-+....++.|+.|++||.|++|-+ ......|+||.+|+|..++
T Consensus 296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~ 344 (359)
T cd06250 296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARA 344 (359)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEec
Confidence 46678889999999999999999943 2233346999999998764
No 89
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.98 E-value=0.006 Score=39.88 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=37.7
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEec--CceEEEEecCCCeEEEEEec
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQT--DKAVMSFETEEEGILAKILV 55 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~--~k~~~~i~ap~~G~i~~~~~ 55 (64)
.+-+.+.+++.|+.|++||.|+.+-. .....+++||.+|.|..+..
T Consensus 230 ~~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~ 277 (288)
T cd06254 230 ASGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTA 277 (288)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC
Confidence 35677888999999999999999943 23467899999999988653
No 90
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=96.95 E-value=0.0025 Score=33.59 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=24.5
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
...|+|.++++++|+.|..|+.|+.|+
T Consensus 45 ~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 45 EVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred CCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 357999999999999999999999874
No 91
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=96.93 E-value=0.0065 Score=40.69 Aligned_cols=44 Identities=23% Similarity=0.499 Sum_probs=36.7
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEec----CceEEEEecCCCeEEEEEe
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQT----DKAVMSFETEEEGILAKIL 54 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~----~k~~~~i~ap~~G~i~~~~ 54 (64)
+-+....++.|+.|++||.|++|-. .....+++||.+|+|..++
T Consensus 263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~ 310 (325)
T TIGR02994 263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH 310 (325)
T ss_pred CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe
Confidence 4566788999999999999999955 2346789999999998864
No 92
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=96.87 E-value=0.0018 Score=38.61 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=25.0
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
...|+|.+++++.||.|+.||+|+.|+
T Consensus 113 ~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 113 PADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred CCCcEEEEEEecCCCccCCCCEEEEec
Confidence 356999999999999999999999987
No 93
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=96.81 E-value=0.0018 Score=41.77 Aligned_cols=26 Identities=38% Similarity=0.601 Sum_probs=20.1
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|+| +|++++|+.|++||+|+.+++
T Consensus 28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 28 VSGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp S-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred CCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 46999 999999999999999999987
No 94
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=96.81 E-value=0.0021 Score=34.28 Aligned_cols=25 Identities=44% Similarity=0.603 Sum_probs=23.3
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEE
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEI 33 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~i 33 (64)
.+|+|.++++++|+.|..||+|+.|
T Consensus 50 ~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 50 VSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp SSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CCEEEEEEEECCCCEECCCCEEEEC
Confidence 4699999999999999999999976
No 95
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=96.77 E-value=0.0023 Score=43.38 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=25.4
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|.|.++++++|+.|++||+|+.|++
T Consensus 68 v~G~V~~v~V~~Gd~VkkGqvL~~LD~ 94 (390)
T PRK15136 68 VSGSVTKVWADNTDFVKEGDVLVTLDP 94 (390)
T ss_pred CCeEEEEEEcCCCCEECCCCEEEEECc
Confidence 469999999999999999999999986
No 96
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.70 E-value=0.011 Score=38.91 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=35.9
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEecC--ceEEEEecCCCeEEEEE
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQTD--KAVMSFETEEEGILAKI 53 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~--k~~~~i~ap~~G~i~~~ 53 (64)
.+-+.+..++.|+.|++||.|+.|-.- ....+++||.+|+|..+
T Consensus 238 ~~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 238 HGGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 355778889999999999999999542 22557899999999876
No 97
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=96.66 E-value=0.004 Score=30.96 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=20.9
Q ss_pred EEEEecCCCeEEEEEecCCCCcccc
Q psy10440 39 VMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 39 ~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
...|.||.+|+|.++++.+|+. |.
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~~-Vk 25 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQQ-VK 25 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCCE-Ec
Confidence 4679999999999999999994 63
No 98
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=96.61 E-value=0.0039 Score=42.92 Aligned_cols=41 Identities=29% Similarity=0.353 Sum_probs=32.9
Q ss_pred EEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecC
Q psy10440 15 KWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 56 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~ 56 (64)
...|++||.|++||+|++-.-. ...-+.||.+|+|+.++..
T Consensus 42 ~mkV~~gD~VkkGq~LfEdKkn-pgv~~Tap~sG~V~aI~RG 82 (447)
T COG1726 42 SMKVREGDAVKKGQVLFEDKKN-PGVVFTAPVSGKVTAIHRG 82 (447)
T ss_pred cceeccCCeeeccceeeecccC-CCeEEeccCCceEEEeecc
Confidence 4578999999999999983321 3567999999999998743
No 99
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=96.58 E-value=0.0047 Score=45.14 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=35.1
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEe
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 54 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~ 54 (64)
|.-.+..|++||+|.+||.|+.-.. -....+.||.+|+|..+.
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~~~-~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQGDG-RMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeecCC-CceeEEeCCCCeEEeeec
Confidence 3345678999999999999997543 247899999999999885
No 100
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=96.58 E-value=0.0031 Score=44.74 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=35.2
Q ss_pred EEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEe
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 54 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~ 54 (64)
...+|++||+|.+||.|..=+. ....+.||.+|+|.++.
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 4678999999999999998776 78899999999999987
No 101
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.52 E-value=0.0043 Score=41.38 Aligned_cols=30 Identities=33% Similarity=0.574 Sum_probs=27.0
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCce
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKA 38 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~ 38 (64)
..|.|.+++|++||.|++||+|+.++....
T Consensus 50 ~~G~v~~i~V~eG~~V~kG~~L~~ld~~~~ 79 (423)
T TIGR01843 50 EGGIVREILVREGDRVKAGQVLVELDATDV 79 (423)
T ss_pred CCcEEEEEEeCCCCEecCCCeEEEEccchh
Confidence 469999999999999999999999987543
No 102
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=96.46 E-value=0.006 Score=41.53 Aligned_cols=29 Identities=21% Similarity=0.341 Sum_probs=26.4
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
...|.|.++++++|+.|++||+|+.|++.
T Consensus 64 ~~~G~V~~i~V~eG~~V~kGq~L~~l~~~ 92 (421)
T TIGR03794 64 PGSGVVIDLDVEVGDQVKKGQVVARLFQP 92 (421)
T ss_pred CCCeEEEEEECCCcCEECCCCEEEEECcH
Confidence 35699999999999999999999999874
No 103
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.24 E-value=0.0078 Score=41.49 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=26.0
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
...|.|.+++|++||.|++||+|+.++..
T Consensus 65 ~~~G~v~~i~V~eG~~V~~G~~L~~ld~~ 93 (457)
T TIGR01000 65 TSNNAIKENYLKENKFVKKGDLLVVYDNG 93 (457)
T ss_pred CCCcEEEEEEcCCCCEecCCCEEEEECch
Confidence 34699999999999999999999999863
No 104
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=96.20 E-value=0.011 Score=35.10 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=23.4
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEE
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEI 33 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~i 33 (64)
..|+|.+|+++.||.|..||.|+.|
T Consensus 105 ~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 105 SAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 5699999999999999999999986
No 105
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=96.16 E-value=0.011 Score=35.94 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=24.6
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
...|+|.+|+++.|+.|..||.|+.|+
T Consensus 130 ~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 130 EVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 357999999999999999999999875
No 106
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=96.06 E-value=0.013 Score=35.50 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=24.5
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
...|+|.+|+++.|+.|..||+|+.|+
T Consensus 129 ~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 129 DKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 357999999999999999999999874
No 107
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=95.78 E-value=0.016 Score=36.95 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=25.5
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|.|.++++++||.|++||.|+.+++
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 569999999999999999999999987
No 108
>PF13437 HlyD_3: HlyD family secretion protein
Probab=95.65 E-value=0.052 Score=29.93 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=25.5
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
..|.|..+.++.|+.|.+|+.|+.|...
T Consensus 6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 6 FDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 4699999999999999999999999764
No 109
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=95.64 E-value=0.033 Score=27.98 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=22.8
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEE
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEI 33 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~i 33 (64)
..|.|..++++.|+.|..|+.|+.|
T Consensus 43 ~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 43 VAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred CCEEEEEEEECCCCEECCCCEEEEC
Confidence 4699999999999999999999874
No 110
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.53 E-value=0.056 Score=32.76 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=39.9
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEE-EEecCCCeEEEEEe
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVM-SFETEEEGILAKIL 54 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~-~i~ap~~G~i~~~~ 54 (64)
.+|-++---+..|+.+.+||+++-+-+.|... -+.+|.+|+++=+.
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~ 144 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYID 144 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEEe
Confidence 36788888899999999999999999998865 49999999997654
No 111
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=95.51 E-value=0.028 Score=38.26 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=25.3
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.+|.|.+++++..+.|++||+|+.|+.
T Consensus 60 VsG~V~eV~V~dnq~Vk~Gd~L~~iD~ 86 (352)
T COG1566 60 VSGRVTEVNVKDNQLVKKGDVLFRIDP 86 (352)
T ss_pred CceEEEEEEecCCCEecCCCeEEEECc
Confidence 359999999999999999999999986
No 112
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=95.46 E-value=0.031 Score=39.32 Aligned_cols=29 Identities=38% Similarity=0.617 Sum_probs=26.2
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
...|+|.+|++++|+.|..|++|+.|+..
T Consensus 140 p~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 140 PASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred CCCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 45799999999999999999999999753
No 113
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.44 E-value=0.04 Score=33.49 Aligned_cols=26 Identities=42% Similarity=0.629 Sum_probs=23.8
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEE
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEI 33 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~i 33 (64)
...|+|.+++++.|+.|..||.|+.|
T Consensus 127 p~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 127 PKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 35799999999999999999999986
No 114
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=95.39 E-value=0.031 Score=36.94 Aligned_cols=27 Identities=33% Similarity=0.446 Sum_probs=24.7
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
...|+|.+|+++.|+.|..||.|+.|+
T Consensus 247 P~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 247 DQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred CCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 347999999999999999999999986
No 115
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=95.35 E-value=0.031 Score=30.13 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=21.8
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK 37 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k 37 (64)
+.+.=..++++.||.|++||+|++|-++.
T Consensus 29 D~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 29 DPAVGIELHKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp -TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred CcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence 34455788999999999999999996643
No 116
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=95.15 E-value=0.03 Score=30.70 Aligned_cols=22 Identities=59% Similarity=1.103 Sum_probs=18.3
Q ss_pred EEEEcCCCCEEcCCCeEEEEec
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.+|++++|+.+.+|+.|++++.
T Consensus 47 v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 47 VEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EEESS-TT-EEETTCEEEEEEE
T ss_pred EEEEeCCCCCccCCcEEEEEEe
Confidence 5699999999999999999975
No 117
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=94.97 E-value=0.068 Score=34.76 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=26.4
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK 37 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k 37 (64)
..|+|.++++++|+.|..|+.|+.++...
T Consensus 52 ~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 52 AAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 56999999999999999999999998643
No 118
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=94.84 E-value=0.077 Score=27.53 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=22.8
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEE
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEI 33 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~i 33 (64)
.+|+|.+++++.|+.+..|+.|+.+
T Consensus 49 ~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 49 KSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEC
Confidence 4699999999999999999999864
No 119
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=94.58 E-value=0.079 Score=36.85 Aligned_cols=29 Identities=41% Similarity=0.575 Sum_probs=26.3
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
...|+|.++++++|+.|..|+.|+.|+..
T Consensus 93 p~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 93 PASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred CCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 45799999999999999999999999764
No 120
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=94.33 E-value=0.11 Score=35.92 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=26.9
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDK 37 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k 37 (64)
...|+|.++++++|+.|..|+.|+.|+...
T Consensus 51 ~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 51 PAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 457999999999999999999999998653
No 121
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=93.98 E-value=0.14 Score=35.39 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=27.6
Q ss_pred CCCeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440 7 TMTEGTIVKWLKKEGDAVAPGDVLCEIQTDK 37 (64)
Q Consensus 7 ~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k 37 (64)
+...|+|.++++++|++|..|+.|+.|+...
T Consensus 50 ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~ 80 (404)
T COG0508 50 APDAGVLAKILVEEGDTVPVGAVIARIEEEG 80 (404)
T ss_pred CCCCeEEEEEeccCCCEEcCCCeEEEEecCC
Confidence 3457999999999999999999999998753
No 122
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=93.95 E-value=0.07 Score=31.32 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=23.6
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
+|+-.++++++||+|++||.|+++...
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~ 104 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLK 104 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 466789999999999999999999753
No 123
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=93.94 E-value=0.13 Score=25.34 Aligned_cols=25 Identities=40% Similarity=0.650 Sum_probs=22.3
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEE
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEI 33 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~i 33 (64)
..|++.++++..|+.+..|+.|+.+
T Consensus 50 ~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 50 AAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 3588999999999999999999864
No 124
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=93.94 E-value=0.14 Score=35.27 Aligned_cols=29 Identities=34% Similarity=0.559 Sum_probs=26.3
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
...|+|.++++++|+.|..|+.|+.|+..
T Consensus 49 ~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 49 PADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred CCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 45799999999999999999999999854
No 125
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=93.75 E-value=0.085 Score=31.07 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=23.6
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
+|+-.++++++||+|++||+|+++...
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 466789999999999999999998753
No 126
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=93.72 E-value=0.16 Score=36.73 Aligned_cols=28 Identities=32% Similarity=0.640 Sum_probs=25.6
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
...|+|.++++++|+.|..||.|+.|+.
T Consensus 568 P~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 568 PANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred CCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 3569999999999999999999999975
No 127
>KOG0559|consensus
Probab=93.39 E-value=0.11 Score=36.04 Aligned_cols=29 Identities=38% Similarity=0.657 Sum_probs=26.4
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
-..|.|.+++|++||+|..|+.|+.|+..
T Consensus 121 P~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 121 PASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred CCcceeeEEecCCCCcccCCceeEEecCC
Confidence 34699999999999999999999999874
No 128
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=93.23 E-value=0.18 Score=36.40 Aligned_cols=27 Identities=56% Similarity=0.837 Sum_probs=24.8
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
...|+|.++++++|+.|..||+|+.|+
T Consensus 565 p~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 565 PVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred CCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 357999999999999999999999986
No 129
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=93.03 E-value=0.11 Score=32.07 Aligned_cols=26 Identities=31% Similarity=0.458 Sum_probs=23.4
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
+|+-.++++++||+|++||+|+++.-
T Consensus 100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 100 KGEGFKRIAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred CCCceEEEecCCCEEeCCCEEEEEcH
Confidence 46778999999999999999999975
No 130
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=93.01 E-value=0.25 Score=34.17 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=26.1
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
...|+|.+|++++|+.+..|+.|+.|+..
T Consensus 47 ~~~G~v~~i~v~~G~~v~vG~~l~~i~~~ 75 (416)
T PLN02528 47 RYKGKVAQINFSPGDIVKVGETLLKIMVE 75 (416)
T ss_pred CCCEEEEEEEeCCCCEeCCCCEEEEEecc
Confidence 45799999999999999999999999754
No 131
>PF13437 HlyD_3: HlyD family secretion protein
Probab=92.59 E-value=0.17 Score=27.78 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=17.3
Q ss_pred EEecCCCeEEEEEecCCCC
Q psy10440 41 SFETEEEGILAKILVPENT 59 (64)
Q Consensus 41 ~i~ap~~G~i~~~~~~~g~ 59 (64)
.|+||++|+|..+.+.+|+
T Consensus 1 ~i~AP~~G~V~~~~~~~G~ 19 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGE 19 (105)
T ss_pred CEECCCCEEEEEEeCCCCC
Confidence 3899999999999999987
No 132
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=92.25 E-value=0.15 Score=30.30 Aligned_cols=28 Identities=39% Similarity=0.509 Sum_probs=21.0
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDK 37 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~k 37 (64)
+|+-.++++++||+|++||+|+++...+
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHH
Confidence 3556889999999999999999997543
No 133
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=91.80 E-value=0.62 Score=30.02 Aligned_cols=44 Identities=32% Similarity=0.422 Sum_probs=34.2
Q ss_pred EEEEEEEcCCCCEEcCCCeE--EEEec--CceEEEEecCCCeEEEEEe
Q psy10440 11 GTIVKWLKKEGDAVAPGDVL--CEIQT--DKAVMSFETEEEGILAKIL 54 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l--~~ie~--~k~~~~i~ap~~G~i~~~~ 54 (64)
+-+....++.|+.|++||.| ..+-. .....+++||.+|+|.-++
T Consensus 228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~~~ 275 (292)
T PF04952_consen 228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIFIR 275 (292)
T ss_dssp SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEESEC
T ss_pred cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEEeC
Confidence 44678899999999999999 65532 2345689999999997654
No 134
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=91.60 E-value=0.34 Score=37.60 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=24.7
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
...|+|.++++++|+.|..||.|+.||
T Consensus 1175 p~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1175 PVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 357999999999999999999999886
No 135
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=91.42 E-value=0.4 Score=37.14 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=37.9
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
+|...++.+++++....++.....+... ...|.||.+|.|.++++++|++ |.
T Consensus 1046 NGq~reV~V~D~s~~~~~~~~~KAd~~~-~~~I~a~~~G~v~~~~v~~Gd~-V~ 1097 (1143)
T TIGR01235 1046 NGQPRRIKVPDRSHKAEAAVRRKADPGN-PAHVGAPMPGVIIEVKVSSGQA-VN 1097 (1143)
T ss_pred CCeEEEEEecCccccccccccccccccc-CceeecCCCcEEEEEEeCCCCE-eC
Confidence 3566777777777766666555444332 4579999999999999999994 64
No 136
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=91.35 E-value=0.34 Score=32.23 Aligned_cols=25 Identities=52% Similarity=0.955 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 12 TIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 12 ~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
.-..|++++|+.+++||.|++++.+
T Consensus 64 i~~~~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 64 IEIQWLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEecc
Confidence 4468999999999999999999863
No 137
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=91.32 E-value=0.2 Score=30.76 Aligned_cols=27 Identities=44% Similarity=0.557 Sum_probs=24.0
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
+|+-.+-++++||+|++||.|+++.-+
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~ 111 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLD 111 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHH
Confidence 477789999999999999999999754
No 138
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=91.31 E-value=0.54 Score=32.77 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=25.9
Q ss_pred CCeEEEEEEEcCCCCE-EcCCCeEEEEecC
Q psy10440 8 MTEGTIVKWLKKEGDA-VAPGDVLCEIQTD 36 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~-V~~g~~l~~ie~~ 36 (64)
...|++.++++++|+. |..|+.|+.|+..
T Consensus 48 ~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~ 77 (435)
T TIGR01349 48 VEEGYLAKILVPEGTKDVPVNKPIAVLVEE 77 (435)
T ss_pred CCCEEEEEEEECCCCEEecCCCEEEEEecc
Confidence 3569999999999999 9999999999653
No 139
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=91.06 E-value=0.5 Score=37.22 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=31.3
Q ss_pred EEcCCCCEEcCCCeEEEEecC-------ceEEEEecCCCeEEE
Q psy10440 16 WLKKEGDAVAPGDVLCEIQTD-------KAVMSFETEEEGILA 51 (64)
Q Consensus 16 w~v~~G~~V~~g~~l~~ie~~-------k~~~~i~ap~~G~i~ 51 (64)
.+|+.|+.|+++|.|+++-+. |..-.|+|+.+|.|.
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~ 447 (1331)
T PRK02597 405 LFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVR 447 (1331)
T ss_pred EEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEE
Confidence 588999999999999999863 456789999999983
No 140
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=90.44 E-value=0.91 Score=29.65 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=24.8
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|.|..++++.|+.|..|++|+.|..
T Consensus 211 ~~G~V~~~~~~~G~~v~~g~~l~~i~~ 237 (334)
T TIGR00998 211 FDGYVARRFVQVGQVVSPGQPLMAVVP 237 (334)
T ss_pred CCcEEEEEecCCCCEeCCCCeeEEEEc
Confidence 469999999999999999999999865
No 141
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=90.32 E-value=0.69 Score=32.57 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=25.4
Q ss_pred CCeEEEEEEEcCCCC-EEcCCCeEEEEecC
Q psy10440 8 MTEGTIVKWLKKEGD-AVAPGDVLCEIQTD 36 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~-~V~~g~~l~~ie~~ 36 (64)
...|++.++++++|+ .|+.|++|+.++..
T Consensus 51 ~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 51 VDEGTLGKILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred CCceEEEEEEecCCCcEeCCCCEEEEEccC
Confidence 457999999999996 79999999999653
No 142
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=89.98 E-value=0.91 Score=31.08 Aligned_cols=30 Identities=37% Similarity=0.577 Sum_probs=26.4
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDK 37 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k 37 (64)
...|+|.++++++|+.|..|+.|+.++...
T Consensus 51 p~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 51 PVAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred CCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 346999999999999999999999997543
No 143
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=89.96 E-value=0.69 Score=33.53 Aligned_cols=25 Identities=48% Similarity=0.606 Sum_probs=23.4
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEE
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEI 33 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~i 33 (64)
..|+|.++++++|+.|..||.|+.|
T Consensus 568 ~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 568 QAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEe
Confidence 4699999999999999999999986
No 144
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.77 E-value=0.59 Score=31.22 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=25.5
Q ss_pred EEecCceEEEEecCCCeEEEEEecCCCCccc
Q psy10440 32 EIQTDKAVMSFETEEEGILAKILVPENTTDG 62 (64)
Q Consensus 32 ~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v 62 (64)
.+........|.||.+|+|.++++.+|+. |
T Consensus 36 ~v~~~~~~~~v~~~~~G~v~~i~V~eG~~-V 65 (423)
T TIGR01843 36 KVVPSGNVKVVQHLEGGIVREILVREGDR-V 65 (423)
T ss_pred EEEECCCeeecccCCCcEEEEEEeCCCCE-e
Confidence 55566677789999999999999999994 5
No 145
>PRK12784 hypothetical protein; Provisional
Probab=89.76 E-value=0.9 Score=25.04 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=25.7
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDK 37 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~k 37 (64)
+|.|....+++||.|..+-.|+.+|.+-
T Consensus 51 SG~I~~v~Ve~Gq~i~~dtlL~~~edDl 78 (84)
T PRK12784 51 SGNIRLVNVVVGQQIHTDTLLVRLEDDL 78 (84)
T ss_pred eeeEEEEEeecCceecCCcEEEEEeece
Confidence 5899999999999999999999999764
No 146
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=89.31 E-value=0.64 Score=30.42 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=25.9
Q ss_pred EEEecCceEEEEecCCC---eEEEEEecCCCCcccc
Q psy10440 31 CEIQTDKAVMSFETEEE---GILAKILVPENTTDGK 63 (64)
Q Consensus 31 ~~ie~~k~~~~i~ap~~---G~i~~~~~~~g~~~v~ 63 (64)
+.++.......|.++.+ |+|.++++++|+. |.
T Consensus 5 G~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~-V~ 39 (327)
T TIGR02971 5 GRLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDR-VQ 39 (327)
T ss_pred ceEeecCceEEecCCCCCCCcEEEEEEccCCCE-ec
Confidence 35566555778999999 9999999999994 63
No 147
>PRK12999 pyruvate carboxylase; Reviewed
Probab=89.25 E-value=0.71 Score=35.80 Aligned_cols=26 Identities=42% Similarity=0.754 Sum_probs=24.5
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
..|+|.++++++|+.|..||.|+.||
T Consensus 1120 ~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1120 VDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 46999999999999999999999987
No 148
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.12 E-value=0.69 Score=30.55 Aligned_cols=22 Identities=36% Similarity=0.666 Sum_probs=20.8
Q ss_pred EEEEcCCCCEEcCCCeEEEEec
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.+|++++|+.|++|+.|++++.
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~G 87 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQG 87 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEE
Confidence 7899999999999999999986
No 149
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=88.96 E-value=0.72 Score=30.18 Aligned_cols=25 Identities=48% Similarity=0.946 Sum_probs=22.4
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
+--.+|++++|+.|++|++|++++.
T Consensus 57 ~l~v~~~~~dG~~v~~g~~i~~i~G 81 (268)
T cd01572 57 GIEVEWLVKDGDRVEPGQVLATVEG 81 (268)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEE
Confidence 4457899999999999999999986
No 150
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=88.89 E-value=1.5 Score=28.92 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=24.5
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|.|..+++..|+.|..|++|+.|-.
T Consensus 210 ~dG~V~~~~~~~G~~V~~G~~l~~I~~ 236 (331)
T PRK03598 210 SDGTILTRAVEPGTMLNAGSTVFTLSL 236 (331)
T ss_pred CCeEEEeccCCCCCCcCCCCeEEEEec
Confidence 469999999999999999999998854
No 151
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=88.73 E-value=0.74 Score=24.98 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=18.1
Q ss_pred EEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 13 IVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
+....++.||.|++||.|+.+...
T Consensus 52 l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 52 LDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp ESEESS-TTSEE-TTCEEEEEBSC
T ss_pred cccccceecccccCCCEEEecCCC
Confidence 445568999999999999999854
No 152
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.77 E-value=0.96 Score=29.91 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=20.9
Q ss_pred EEEEcCCCCEEcCCCeEEEEec
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.+|++++|+.+++|++|++++.
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~G 89 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLEG 89 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEE
Confidence 7899999999999999999986
No 153
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.73 E-value=0.96 Score=30.05 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=21.3
Q ss_pred EEEEEcCCCCEEcCCCeEEEEec
Q psy10440 13 IVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
=.+|++++|+.+++|+.|++++.
T Consensus 66 ~v~~~~~dG~~v~~G~~i~~~~G 88 (281)
T PRK06543 66 TVTLAVADGERFEAGDILATVTG 88 (281)
T ss_pred EEEEEeCCCCEecCCCEEEEEEe
Confidence 47899999999999999999986
No 154
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=87.73 E-value=0.99 Score=29.62 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=21.0
Q ss_pred EEEEEcCCCCEEcCCCeEEEEec
Q psy10440 13 IVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
=.+|++++|+.|++|++|++++.
T Consensus 57 ~v~~~~~dG~~v~~g~~i~~i~G 79 (272)
T cd01573 57 EVDLAAASGSRVAAGAVLLEAEG 79 (272)
T ss_pred EEEEEcCCCCEecCCCEEEEEEE
Confidence 36799999999999999999986
No 155
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=87.56 E-value=0.99 Score=30.00 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=21.1
Q ss_pred EEEEEcCCCCEEcCCCeEEEEec
Q psy10440 13 IVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
=.+|++++|+.|++|+.|++++.
T Consensus 62 ~v~~~~~dG~~v~~G~~i~~~~G 84 (284)
T PRK06096 62 TIDDAVSDGSQANAGQRLISAQG 84 (284)
T ss_pred EEEEEeCCCCEeCCCCEEEEEEe
Confidence 37899999999999999999985
No 156
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.54 E-value=1 Score=29.72 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.8
Q ss_pred EEEEcCCCCEEcCCCeEEEEec
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.+|++++|+.+++||+|++++.
T Consensus 60 ~~~~~~dG~~v~~g~~i~~i~G 81 (273)
T PRK05848 60 CVFTIKDGERFKKGDILMEIEG 81 (273)
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 6899999999999999999986
No 157
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=87.49 E-value=1.6 Score=29.17 Aligned_cols=31 Identities=13% Similarity=0.107 Sum_probs=24.2
Q ss_pred EEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 31 CEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 31 ~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
+.++.. -...+.|+.+|.|.++++++|++ |.
T Consensus 54 G~v~~~-~~~~l~a~~~G~V~~v~v~~G~~-V~ 84 (370)
T PRK11578 54 GKLDAL-RKVDVGAQVSGQLKTLSVAIGDK-VK 84 (370)
T ss_pred EEEEee-eEEEEecccceEEEEEEcCCCCE-Ec
Confidence 344443 36689999999999999999994 53
No 158
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=87.39 E-value=2.4 Score=26.27 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=32.1
Q ss_pred EcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440 17 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 17 ~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~ 60 (64)
++++|+.+++||.++-++-. .+..+.-|.+ .++.+++|++
T Consensus 135 ~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~ 174 (189)
T TIGR00164 135 YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEK 174 (189)
T ss_pred ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCE
Confidence 45899999999999999977 5666777766 2677888884
No 159
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=87.30 E-value=1 Score=30.11 Aligned_cols=22 Identities=23% Similarity=0.656 Sum_probs=20.7
Q ss_pred EEEEcCCCCEEcCCCeEEEEec
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.+|++++|+.|++|+.|++++.
T Consensus 87 v~~~~~dG~~v~~G~~i~~i~G 108 (296)
T PRK09016 87 IEWHVDDGDVITANQTLFELTG 108 (296)
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 6899999999999999999986
No 160
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=87.19 E-value=2.3 Score=26.68 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=32.5
Q ss_pred EcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440 17 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 17 ~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~ 60 (64)
+.++|+.+++||.++.++-. .+..+.-|.+ .++.+++|++
T Consensus 155 ~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~k 194 (206)
T PRK05305 155 YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQK 194 (206)
T ss_pred eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCE
Confidence 56899999999999999987 4666777766 2778889985
No 161
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=87.01 E-value=1.2 Score=32.10 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=24.0
Q ss_pred CCeEEEEEEEcCCCC-EEcCCCeEEEEe
Q psy10440 8 MTEGTIVKWLKKEGD-AVAPGDVLCEIQ 34 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~-~V~~g~~l~~ie 34 (64)
...|+|.++++++|+ .|..|++|+.+.
T Consensus 161 ~~~G~l~ki~~~eG~~~v~vG~~ia~i~ 188 (539)
T PLN02744 161 MEEGYLAKIVKGDGAKEIKVGEVIAITV 188 (539)
T ss_pred CCCcEEEEEEecCCCcccCCCCEEEEEc
Confidence 457999999999996 799999999883
No 162
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=86.98 E-value=1.3 Score=27.83 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=24.2
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|.|..+++..|+.|..|++|+.|-.
T Consensus 95 ~dG~V~~~~~~~G~~v~~g~~l~~i~~ 121 (265)
T TIGR00999 95 FDGYITQKSVTLGDYVAPQAELFRVAD 121 (265)
T ss_pred CCeEEEEEEcCCCCEeCCCCceEEEEc
Confidence 469999999999999999999998743
No 163
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=86.98 E-value=1.3 Score=35.14 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=32.6
Q ss_pred EEEcCCCCEEcCCCeEEEEecC--------ceEEEEecCCCeEEEEEe
Q psy10440 15 KWLKKEGDAVAPGDVLCEIQTD--------KAVMSFETEEEGILAKIL 54 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~~ie~~--------k~~~~i~ap~~G~i~~~~ 54 (64)
..+|+.|+.|++||.|++.... |...+|.|..+|.+.--.
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~~~~ 452 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMHWST 452 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEEccc
Confidence 4689999999999999999763 344789999999985433
No 164
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=86.78 E-value=1.2 Score=29.16 Aligned_cols=24 Identities=46% Similarity=0.817 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 12 TIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 12 ~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
-=.+|++++|+.+++|++|++++.
T Consensus 57 ~~v~~~~~dG~~v~~g~~i~~i~G 80 (269)
T cd01568 57 IEVEWLVKDGDRVEAGQVLLEVEG 80 (269)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEE
Confidence 346799999999999999999986
No 165
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.76 E-value=1.2 Score=29.72 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.1
Q ss_pred EEEEEcCCCCEEcCCCeEEEEec
Q psy10440 13 IVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
=.+|++++|+.+++|++|++++.
T Consensus 77 ~v~~~~~dG~~v~~g~~i~~i~G 99 (289)
T PRK07896 77 EVLDRVEDGARVPPGQALLTVTA 99 (289)
T ss_pred EEEEEcCCCCEecCCCEEEEEEE
Confidence 47799999999999999999986
No 166
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.74 E-value=1.2 Score=29.62 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEcCCCCEEcCCCeEEEEec
Q psy10440 13 IVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
-.+|++++|+.|++|+.|++++.
T Consensus 73 ~~~~~~~dG~~v~~g~~i~~~~G 95 (288)
T PRK07428 73 SFTPLVAEGAACESGQVVAEIEG 95 (288)
T ss_pred EEEEEcCCCCEecCCCEEEEEEE
Confidence 35799999999999999999986
No 167
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.35 E-value=1.3 Score=29.46 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 12 TIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 12 ~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
--.+|++++|+.+++|+.|++++.
T Consensus 70 ~~~~~~~~dG~~v~~g~~i~~i~G 93 (281)
T PRK06106 70 IEMRRHLPDGAAVAPGDVIATISG 93 (281)
T ss_pred eEEEEEeCCCCEEcCCCEEEEEEE
Confidence 347899999999999999999986
No 168
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=86.18 E-value=1.7 Score=29.82 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=33.0
Q ss_pred EEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 13 IVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
+.-..++.++.-..=+..+.+++. ....|.++.+|+|.++++++|++ |.
T Consensus 62 V~v~~v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~-Vk 110 (415)
T PRK11556 62 VQAATATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQ-VK 110 (415)
T ss_pred eEEEEEEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCE-ec
Confidence 333344444433333455666664 47789999999999999999984 53
No 169
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.12 E-value=1.3 Score=29.59 Aligned_cols=23 Identities=30% Similarity=0.741 Sum_probs=21.2
Q ss_pred EEEEEcCCCCEEcCCCeEEEEec
Q psy10440 13 IVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
=.+|++++|+.|++|+.|++++.
T Consensus 83 ~v~~~~~dG~~v~~G~~i~~~~G 105 (294)
T PRK06978 83 EVTWRYREGDRMTADSTVCELEG 105 (294)
T ss_pred EEEEEcCCCCEeCCCCEEEEEEe
Confidence 47899999999999999999975
No 170
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=86.02 E-value=1.3 Score=29.81 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.9
Q ss_pred EEEEEcCCCCEEcCCCeEEEEec
Q psy10440 13 IVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
-.+|++++|+.|++|+.|++++.
T Consensus 79 ~v~~~~~dG~~v~~G~~i~~v~G 101 (308)
T PLN02716 79 KVEWAAIDGDFVHKGLKFGKVTG 101 (308)
T ss_pred EEEEEeCCCCEecCCCEEEEEEE
Confidence 36799999999999999999975
No 171
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.01 E-value=1.4 Score=29.24 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=21.0
Q ss_pred EEEEEcCCCCEEcCCCeEEEEec
Q psy10440 13 IVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
=.+|++++|+.|++|+.|++++.
T Consensus 59 ~v~~~~~dG~~v~~g~~i~~i~G 81 (278)
T PRK08385 59 KVEVRKRDGEEVKAGEVILELKG 81 (278)
T ss_pred EEEEEcCCCCEecCCCEEEEEEE
Confidence 36899999999999999999986
No 172
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=85.94 E-value=0.71 Score=29.43 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=14.8
Q ss_pred EEEecCCCeEEEEEecCCCCccc
Q psy10440 40 MSFETEEEGILAKILVPENTTDG 62 (64)
Q Consensus 40 ~~i~ap~~G~i~~~~~~~g~~~v 62 (64)
..|.++.+|+|.++++++|+. |
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~-V 23 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQR-V 23 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEE-E
T ss_pred EEEeCCCCeEEEEEEccCcCE-E
Confidence 468999999999999999984 5
No 173
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=85.69 E-value=1.5 Score=28.74 Aligned_cols=22 Identities=50% Similarity=1.075 Sum_probs=20.4
Q ss_pred EEEEcCCCCEEcCCCeEEEEec
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.+|++++|+.+++|++|++++.
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~G 77 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVEG 77 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEEE
Confidence 4799999999999999999986
No 174
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=85.20 E-value=1.6 Score=28.94 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=21.1
Q ss_pred EEEEEcCCCCEEcCCCeEEEEec
Q psy10440 13 IVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
-.+|++++|+.|++|+.|++++.
T Consensus 61 ~~~~~~~dG~~v~~g~~i~~~~G 83 (277)
T TIGR01334 61 SIDYAVPSGSRALAGTLLLEAKG 83 (277)
T ss_pred EEEEEeCCCCEeCCCCEEEEEEe
Confidence 47899999999999999999986
No 175
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=85.19 E-value=1.2 Score=29.60 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=24.7
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|.|.+.+++.|+.|..|++|+.|-.
T Consensus 215 ~dG~V~~~~~~~G~~V~~g~~l~~I~~ 241 (346)
T PRK10476 215 FDGRVVGLKVSVGEFAAPMQPIFTLID 241 (346)
T ss_pred CCcEEEeeecCCCCCcCCCCeEEEEec
Confidence 469999999999999999999999854
No 176
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=85.11 E-value=0.86 Score=33.08 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=23.8
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
+|+-.+.++++||+|++||.|++++-+
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~ 568 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLD 568 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHH
Confidence 567789999999999999999999753
No 177
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=84.83 E-value=1.2 Score=31.32 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=22.8
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
+.+-=+.++++.|+.|++||+|++|-+
T Consensus 377 D~~aGi~l~~k~Gd~V~~Gd~l~~i~~ 403 (437)
T TIGR02643 377 DYSVGLTDLLPLGDRVEKGEPLAVVHA 403 (437)
T ss_pred CcccCeEeccCCcCEeCCCCeEEEEEC
Confidence 344457899999999999999999974
No 178
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=84.60 E-value=1.3 Score=31.21 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=22.7
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
+.+-=+.++++.|+.|++||+|++|-+
T Consensus 378 d~~aGi~l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 378 DYSVGLTLHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred CcCCCeEEccCCcCEECCCCeEEEEeC
Confidence 344457899999999999999999974
No 179
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=84.17 E-value=2.5 Score=27.12 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=24.8
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|.|..+.++.|+.+.+|++|+.|-.
T Consensus 141 ~~G~V~~~~~~~G~~v~~g~~l~~i~~ 167 (322)
T TIGR01730 141 FDGTIGRRLVEVGAYVTAGQTLATIVD 167 (322)
T ss_pred CCcEEEEEEcCCCceeCCCCcEEEEEc
Confidence 469999999999999999999999965
No 180
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=83.99 E-value=1 Score=32.99 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=23.1
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
+|+-.+.++++||+|++||+|++++-
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~ 583 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDI 583 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcH
Confidence 46667899999999999999999975
No 181
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=83.95 E-value=4.9 Score=26.57 Aligned_cols=26 Identities=12% Similarity=0.254 Sum_probs=23.6
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
..|.|.+.+++.|+.|..|++++.|-
T Consensus 161 ~dGvV~~~~~~~G~~V~~g~~l~~Iv 186 (310)
T PRK10559 161 ADGWVTNLNVYTGEFITRGSTAVALV 186 (310)
T ss_pred CCeEEEeEecCCCCEecCCCeeEEEE
Confidence 46999999999999999999999764
No 182
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=83.79 E-value=3.8 Score=28.11 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=24.7
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
-.|.|.+.++++|+.|..|+.|++|-.
T Consensus 216 ~dGvV~~~~v~~G~~V~~g~~L~~I~d 242 (409)
T PRK09783 216 IDGVITAFDLRAGMNIAKDNVVAKIQG 242 (409)
T ss_pred CCeEEEEEECCCCCEECCCCeEEEEEc
Confidence 369999999999999999999999965
No 183
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=83.78 E-value=2.3 Score=29.01 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=24.3
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|.|...+++.|+.|..|++|+.|-.
T Consensus 222 ~dG~V~~~~v~~G~~V~~g~pl~~Iv~ 248 (390)
T PRK15136 222 MTGYVSRRSVQVGAQISPTTPLMAVVP 248 (390)
T ss_pred CCeEEEEEecCCCCEeCCCCeEEEEEe
Confidence 369999999999999999999998843
No 184
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=83.77 E-value=1.7 Score=31.93 Aligned_cols=27 Identities=41% Similarity=0.594 Sum_probs=24.7
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
...|+|.++.+.+|+.|..|++|++++
T Consensus 618 ~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 618 PRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred CcCcEEEEEEecCCCccccCceEEEec
Confidence 356999999999999999999999986
No 185
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=83.72 E-value=2 Score=30.79 Aligned_cols=28 Identities=36% Similarity=0.448 Sum_probs=23.1
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
..+-=+.++++.|+.|++||+|++|-++
T Consensus 444 d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 444 DKGAGVELHVKVGDQVKKGDPLYTIYAE 471 (493)
T ss_pred CcCcCeEEeccCCCEecCCCeEEEEECC
Confidence 3444578999999999999999999743
No 186
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=83.48 E-value=2 Score=29.95 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=23.2
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
+.+-=+.++++.|+.|++||+|++|-++
T Consensus 371 d~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 371 DHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 3444578899999999999999999754
No 187
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=83.30 E-value=2.8 Score=29.02 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=24.5
Q ss_pred EEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 32 EIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 32 ~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
.|........|.++..|+|.++++++|+. |.
T Consensus 52 ~v~p~~~~~~vq~~~~G~v~~i~V~eG~~-V~ 82 (457)
T TIGR01000 52 TIEPAKILSKIQSTSNNAIKENYLKENKF-VK 82 (457)
T ss_pred EEEecCceEEEEcCCCcEEEEEEcCCCCE-ec
Confidence 34444446789999999999999999994 53
No 188
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=83.01 E-value=5 Score=27.39 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=24.6
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|.|....+..|+.|..|++|+.|..
T Consensus 260 ~dG~V~~~~~~~G~~v~~g~~l~~i~~ 286 (421)
T TIGR03794 260 HSGRVIELNYTPGQLVAAGAPLASLEV 286 (421)
T ss_pred CCeEEEEeeCCCCCEecCCCcEEEEEc
Confidence 469999999999999999999999953
No 189
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=82.97 E-value=1.9 Score=30.35 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=23.9
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK 37 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k 37 (64)
+.+-=+.++++.||.|++||+|++|-+++
T Consensus 373 d~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 373 DLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred CcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 44555789999999999999999997543
No 190
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=82.68 E-value=2.1 Score=27.58 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=18.5
Q ss_pred EEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 31 CEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 31 ~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
+.++. ....+.+|.+|+| ++++.+|++ |.
T Consensus 15 G~v~~--~~~~v~~~~~G~v-~~~v~~G~~-V~ 43 (328)
T PF12700_consen 15 GTVEP--NEVSVSAPVSGRV-SVNVKEGDK-VK 43 (328)
T ss_dssp EEEEE--SEEEE--SS-EEE-EE-S-TTSE-EE
T ss_pred EEEEE--EEEEEECCCCEEE-EEEeCCcCE-EC
Confidence 35554 4678999999999 999999995 64
No 191
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=82.55 E-value=2.7 Score=28.87 Aligned_cols=44 Identities=27% Similarity=0.372 Sum_probs=26.8
Q ss_pred CeEEEEEEE-------cCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEE
Q psy10440 9 TEGTIVKWL-------KKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAK 52 (64)
Q Consensus 9 ~~g~i~~w~-------v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~ 52 (64)
..|.|.++. |++||.|++||.|..=...+....-.-+.+|.|..
T Consensus 193 kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIsG~i~~~~~~~~v~A~g~V~a 243 (382)
T TIGR02876 193 KDGVIKRVYVTSGEPVVKKGDVVKKGDLLISGILGKEGKTYTVHAEGEVFA 243 (382)
T ss_pred CCCEEEEEEEcCCeEEEccCCEEcCCCEEEEeEeCCCCceEEEccceEEEE
Confidence 457787775 56789999999998432222222224455666644
No 192
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=82.46 E-value=3.7 Score=27.67 Aligned_cols=33 Identities=12% Similarity=0.078 Sum_probs=26.0
Q ss_pred eEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 29 VLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 29 ~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..+.++.. ....|.++.+|+|.++++++|++ |.
T Consensus 54 ~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~-Vk 86 (385)
T PRK09578 54 LPGRLDAY-RQAEVRARVAGIVTARTYEEGQE-VK 86 (385)
T ss_pred EEEEEEEe-eEEEEeccCcEEEEEEECCCCCE-Ec
Confidence 44566654 36789999999999999999984 53
No 193
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=82.23 E-value=4 Score=27.56 Aligned_cols=45 Identities=13% Similarity=0.071 Sum_probs=31.4
Q ss_pred EcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 17 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 17 ~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
.++.++.-..-+..+.++... ...+.++.+|+|.++++.+|++ |.
T Consensus 40 ~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~-Vk 84 (385)
T PRK09859 40 TLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDK-VN 84 (385)
T ss_pred EeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCE-ec
Confidence 334444333444556666543 6789999999999999999994 53
No 194
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=81.79 E-value=1.3 Score=32.51 Aligned_cols=27 Identities=37% Similarity=0.531 Sum_probs=23.4
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
+|+-.+.++++||+|++||.|++++.+
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~ 604 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLD 604 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHH
Confidence 466678999999999999999999753
No 195
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=81.20 E-value=3.4 Score=32.63 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=31.7
Q ss_pred EEEcCCCCEEcCCCeEEEEecC-------ceEEEEecCCCeEEEE
Q psy10440 15 KWLKKEGDAVAPGDVLCEIQTD-------KAVMSFETEEEGILAK 52 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~~ie~~-------k~~~~i~ap~~G~i~~ 52 (64)
-.+|+.|+.|+++|.|+++-+. |..-.|+|..+|.+--
T Consensus 404 ~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~k~i~s~~~Ge~~~ 448 (1227)
T TIGR02388 404 LLFVEDGQTVDAGQLLAEIALGAVRKSTEKATKDVASDLAGEVKF 448 (1227)
T ss_pred EEEEECCCEEecCcEEEEeccCCcccceeEEEEEEecCCCceEEe
Confidence 3579999999999999999864 4467899999998843
No 196
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=80.96 E-value=1.3 Score=30.03 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=19.4
Q ss_pred EEEEcCCCCEEcCCCeEEEEecC
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
.+++|++||.|++||.|+.+-+.
T Consensus 270 ~~i~Vk~Gq~V~~Gq~Ig~~G~t 292 (319)
T PRK10871 270 DTMLVREQQEVKAGQKIATMGST 292 (319)
T ss_pred CccccCCcCEECCCCeEEeEcCC
Confidence 34679999999999999998654
No 197
>PRK04350 thymidine phosphorylase; Provisional
Probab=80.31 E-value=3.4 Score=29.58 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=23.6
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
++.+-=+.++++.||.|++||+|++|-+.
T Consensus 435 ~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~ 463 (490)
T PRK04350 435 KDKGAGIDLHVKVGDKVKKGDPLYTIHAE 463 (490)
T ss_pred cCcccCeEEeccCCCEecCCCeEEEEecC
Confidence 34455578999999999999999999743
No 198
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=79.54 E-value=1.9 Score=29.53 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=19.6
Q ss_pred EEEEecCCCeEEEEEecCCCCc
Q psy10440 39 VMSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 39 ~~~i~ap~~G~i~~~~~~~g~~ 60 (64)
...|+||.+|+|.++.+..|+-
T Consensus 208 ~T~IrAP~dG~V~~~~v~~G~~ 229 (352)
T COG1566 208 RTVIRAPVDGYVTNLSVRVGQY 229 (352)
T ss_pred CCEEECCCCceEEeecccCCCe
Confidence 4579999999999999999983
No 199
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=79.49 E-value=3.6 Score=29.52 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=23.6
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
++.+-=..++++.||.|++||+|++|-+.
T Consensus 444 id~~aGi~l~~k~Gd~V~~G~pl~~i~a~ 472 (500)
T TIGR03327 444 NDKGAGVYLHVKVGEKVKKGDPLYTIYAE 472 (500)
T ss_pred cCcccCeEEeccCcCEeCCCCeEEEEECC
Confidence 34445578899999999999999999743
No 200
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.24 E-value=3.4 Score=27.63 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.9
Q ss_pred EEEEEEc--CCCCEEcCCCeEEEEec
Q psy10440 12 TIVKWLK--KEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 12 ~i~~w~v--~~G~~V~~g~~l~~ie~ 35 (64)
.-..|++ ++|+.+++|+.|++++.
T Consensus 71 ~~~~~~~~~~dG~~v~~G~~i~~v~G 96 (290)
T PRK06559 71 VTFQNPHQFKDGDRLTSGDLVLEIIG 96 (290)
T ss_pred EEEEEeecCCCCCEecCCCEEEEEEE
Confidence 3467887 99999999999999986
No 201
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=79.20 E-value=3.4 Score=28.29 Aligned_cols=42 Identities=29% Similarity=0.435 Sum_probs=26.5
Q ss_pred CeEEEEEEE-------cCCCCEEcCCCeEE--EEecCceEEEEecCCCeEEEE
Q psy10440 9 TEGTIVKWL-------KKEGDAVAPGDVLC--EIQTDKAVMSFETEEEGILAK 52 (64)
Q Consensus 9 ~~g~i~~w~-------v~~G~~V~~g~~l~--~ie~~k~~~~i~ap~~G~i~~ 52 (64)
..|.|.++. |++||.|++||.|. .++....... -++.|.|..
T Consensus 196 kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG~i~~~~~~~~--v~A~G~V~a 246 (385)
T PF06898_consen 196 KDGVITSIIVRSGTPLVKVGDTVKKGDVLISGVIEIEGDEQE--VHADGDVKA 246 (385)
T ss_pred CCCEEEEEEecCCeEEecCCCEECCCCEEEeeeEcCCCCceE--ECCcEEEEE
Confidence 457777765 57889999999998 4443322222 445565544
No 202
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=78.39 E-value=13 Score=28.95 Aligned_cols=41 Identities=29% Similarity=0.404 Sum_probs=29.3
Q ss_pred cCCCCEEcCCCeEEEE-ecCceEEEEecC--CCeEEEEEecCCCC
Q psy10440 18 KKEGDAVAPGDVLCEI-QTDKAVMSFETE--EEGILAKILVPENT 59 (64)
Q Consensus 18 v~~G~~V~~g~~l~~i-e~~k~~~~i~ap--~~G~i~~~~~~~g~ 59 (64)
++.||.|..||.++++ |+.-....|-.| ..|+|+.+ +.+|+
T Consensus 124 ~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~ 167 (1017)
T PRK14698 124 VKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGE 167 (1017)
T ss_pred eecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCC
Confidence 6789999999999988 554445555444 48999877 33454
No 203
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=78.17 E-value=5.1 Score=26.05 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=25.4
Q ss_pred cCCCCEEcC-CCeEEEEecCceEEEEecCCCeEEEE
Q psy10440 18 KKEGDAVAP-GDVLCEIQTDKAVMSFETEEEGILAK 52 (64)
Q Consensus 18 v~~G~~V~~-g~~l~~ie~~k~~~~i~ap~~G~i~~ 52 (64)
...++.+.+ |+.|+... ..++++|++|.+.-
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~vl~ 257 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCVLI 257 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEEEE
Confidence 466889999 99999943 38999999998754
No 204
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=77.13 E-value=6.3 Score=33.66 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=35.6
Q ss_pred EEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~ 59 (64)
..+++++|+.|++||.|++...- ..+|.|..+|++.=....+|-
T Consensus 2422 a~l~v~~g~~V~~g~~la~wdp~--~~piisE~~G~v~f~d~~~g~ 2465 (2836)
T PRK14844 2422 AKLYVDEGGSVKIGDKVAEWDPY--TLPIITEKTGTVSYQDLKDGI 2465 (2836)
T ss_pred cEEEecCCCEecCCCEEEEEcCC--CcceEeecceEEEEEEEecce
Confidence 35789999999999999998764 678899999998655555554
No 205
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=75.36 E-value=5.6 Score=27.22 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 12 TIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 12 ~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.+..|.+++|+.+.+|++|++++.
T Consensus 71 ~~~i~a~~eG~~v~~gepvl~i~G 94 (352)
T PRK07188 71 KLKIRYLKDGDIINPFETVLEIEG 94 (352)
T ss_pred ceEEEEcCCCCEecCCCEEEEEEE
Confidence 357889999999999999999986
No 206
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=75.13 E-value=9.7 Score=26.43 Aligned_cols=42 Identities=26% Similarity=0.367 Sum_probs=29.4
Q ss_pred EcCCCCEEcCCCeEEEEe-cCceEEEEecC--CCeEEEEEecCCCC
Q psy10440 17 LKKEGDAVAPGDVLCEIQ-TDKAVMSFETE--EEGILAKILVPENT 59 (64)
Q Consensus 17 ~v~~G~~V~~g~~l~~ie-~~k~~~~i~ap--~~G~i~~~~~~~g~ 59 (64)
.++.||.|..||.++.+. +.-....|-.| ..|++..+ +.+|+
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~ 98 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGD 98 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCC
Confidence 468999999999999884 44345666555 48988664 33444
No 207
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=74.70 E-value=3.4 Score=31.85 Aligned_cols=26 Identities=35% Similarity=0.643 Sum_probs=23.9
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
..|+|.+++|..|++|..||.|..++
T Consensus 1123 ~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1123 FDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred CCceEeEEEecCCCccccCceEEEcc
Confidence 46999999999999999999998875
No 208
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=74.29 E-value=3.6 Score=29.83 Aligned_cols=22 Identities=50% Similarity=0.684 Sum_probs=20.1
Q ss_pred CeEEEEEEEcCCCCEEcCCCeE
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVL 30 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l 30 (64)
..|+|.++++++|+.|..||.|
T Consensus 561 ~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 561 AAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred CCeEEEEEEeCCCCEeCCCCCC
Confidence 4699999999999999999975
No 209
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=73.63 E-value=14 Score=25.16 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.6
Q ss_pred CeEEEEEEEcCCCCEEcCCCe--EEEE
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDV--LCEI 33 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~--l~~i 33 (64)
-.|.|.+.+++.|+.|..|+. |+.+
T Consensus 180 fdG~V~~~~v~~G~~V~~g~~~~l~~i 206 (397)
T PRK15030 180 ISGRIGKSNVTEGALVQNGQATALATV 206 (397)
T ss_pred CCeEEeeeecCCCCEECCCCCceEEEE
Confidence 369999999999999999985 6665
No 210
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=73.41 E-value=13 Score=27.23 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=28.9
Q ss_pred cCCCCEEcCCCeEEEE-ecCce-EEEEecCCCeEEEEEecCCCCc
Q psy10440 18 KKEGDAVAPGDVLCEI-QTDKA-VMSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 18 v~~G~~V~~g~~l~~i-e~~k~-~~~i~ap~~G~i~~~~~~~g~~ 60 (64)
++.||.|..||+|+.+ |+.-. ..-+..+..|..+......|+-
T Consensus 122 ~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~y 166 (588)
T COG1155 122 VKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGEY 166 (588)
T ss_pred cccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCCc
Confidence 4799999999999988 44422 2335555566665666666653
No 211
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=73.17 E-value=12 Score=23.22 Aligned_cols=49 Identities=24% Similarity=0.300 Sum_probs=33.4
Q ss_pred eEEEEEEEc-CCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440 10 EGTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 10 ~g~i~~w~v-~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~ 60 (64)
-++|.-+.- ++|+.+++||.++.++- ..++.+.-|.+-.. +..+++|++
T Consensus 144 v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~-~~~v~~g~~ 193 (202)
T PF02666_consen 144 VGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIF-EWSVKPGQK 193 (202)
T ss_pred eceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCcc-ccccCCCCE
Confidence 356655554 59999999999999987 44555555544322 667777773
No 212
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=72.69 E-value=5.1 Score=27.23 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.6
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
+++ |++++|+.|.+|+++++++.
T Consensus 70 ~~v--~~~~dG~~v~~g~~il~i~G 92 (343)
T PRK08662 70 VDV--YALPEGTLFDPKEPVMRIEG 92 (343)
T ss_pred cEE--EEeCCCCEecCCceEEEEEE
Confidence 454 89999999999999999986
No 213
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=72.18 E-value=7.2 Score=25.14 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.7
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
+....|.+.+|+.+..|+++++++.
T Consensus 49 ~~~~~~~~~eG~~v~~g~~vl~i~G 73 (281)
T cd00516 49 GPLVILAVPEGTVVEPGEPLLTIEG 73 (281)
T ss_pred CceEEEECCCCCEecCCCEEEEEEE
Confidence 5678899999999999999999986
No 214
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=69.77 E-value=16 Score=26.88 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=27.2
Q ss_pred EcCCCCEEcCCCeEEEE-ecCceEEEEecC--CCeEEEEE
Q psy10440 17 LKKEGDAVAPGDVLCEI-QTDKAVMSFETE--EEGILAKI 53 (64)
Q Consensus 17 ~v~~G~~V~~g~~l~~i-e~~k~~~~i~ap--~~G~i~~~ 53 (64)
.++.||.|..||+++++ |+.-....|-.| ++|+|+.+
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i 162 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI 162 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE
Confidence 57889999999999977 554445555444 46988766
No 215
>KOG0557|consensus
Probab=68.94 E-value=5.3 Score=28.50 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=24.1
Q ss_pred CCCeEEEEEEEcCCC-CEEcCCCeEEEE
Q psy10440 7 TMTEGTIVKWLKKEG-DAVAPGDVLCEI 33 (64)
Q Consensus 7 ~~~~g~i~~w~v~~G-~~V~~g~~l~~i 33 (64)
...+|.+.++++++| ..|.-|..||.+
T Consensus 86 ~~ddGyLAKILi~EGskdvpVGk~Iaii 113 (470)
T KOG0557|consen 86 AQDDGYLAKILIEEGSKDVPVGKPIAII 113 (470)
T ss_pred eccCCeeeeeeeccCcccccCCCceEEE
Confidence 356899999999999 789999999976
No 216
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]
Probab=67.96 E-value=4.8 Score=25.30 Aligned_cols=21 Identities=33% Similarity=0.484 Sum_probs=18.8
Q ss_pred EEEcCCCCEEcCCCeEEEEec
Q psy10440 15 KWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~~ie~ 35 (64)
+..|+.|+.|++||.|+.+.+
T Consensus 215 ~~~V~~G~~V~~G~~Ig~~G~ 235 (277)
T COG0739 215 SILVKEGQKVKAGQVIGYVGS 235 (277)
T ss_pred hhccCCCCEeccCCEEEEecC
Confidence 678999999999999998854
No 217
>PRK11637 AmiB activator; Provisional
Probab=67.25 E-value=4.9 Score=27.67 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=18.9
Q ss_pred EEEcCCCCEEcCCCeEEEEecC
Q psy10440 15 KWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
.+.|..|+.|.+||+|+.+.+.
T Consensus 380 ~~~v~~G~~V~~G~~ig~~g~~ 401 (428)
T PRK11637 380 SALVSVGAQVRAGQPIALVGSS 401 (428)
T ss_pred cCCCCCcCEECCCCeEEeecCC
Confidence 4568999999999999998664
No 218
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=66.43 E-value=24 Score=22.10 Aligned_cols=20 Identities=10% Similarity=0.057 Sum_probs=17.4
Q ss_pred EEEecCCCeEEEEEecCCCC
Q psy10440 40 MSFETEEEGILAKILVPENT 59 (64)
Q Consensus 40 ~~i~ap~~G~i~~~~~~~g~ 59 (64)
.-++||++|+|.+....+|.
T Consensus 92 H~~~aP~~G~V~~~~~~~G~ 111 (206)
T PRK05305 92 HVNRAPVSGTVTKVEYRPGK 111 (206)
T ss_pred CEEEeCccCEEEEEEEECCe
Confidence 45899999999999888886
No 219
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=65.75 E-value=10 Score=26.93 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=22.9
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..+-=+..+++.|+.|++||+|+.|-+
T Consensus 374 D~~aGi~l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 374 DKGAGIYLHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred CcccceEEEecCCCeeccCCeEEEEec
Confidence 345556789999999999999999977
No 220
>PRK11649 putative peptidase; Provisional
Probab=63.44 E-value=6.6 Score=27.55 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=19.1
Q ss_pred EEEEEcCCCCEEcCCCeEEEEec
Q psy10440 13 IVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
+.++.++.|+.|++||.|+.+.+
T Consensus 362 Ls~~~v~~Gq~V~~Gq~IG~vG~ 384 (439)
T PRK11649 362 LRKLLVKPGQKVKRGDRIALSGN 384 (439)
T ss_pred cCcccCCCcCEECCCCeEEEEcC
Confidence 34556999999999999999854
No 221
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=62.22 E-value=21 Score=22.64 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=24.5
Q ss_pred eEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 29 VLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 29 ~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..+.++. .....+.++..|.|.++++++|+. |.
T Consensus 57 ~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~-Vk 89 (372)
T COG0845 57 APGRVEA-TRSVEVLARVAGIVAEILVKEGDR-VK 89 (372)
T ss_pred eeeEEEe-eeeeeEecccccEEEEEEccCCCe-ec
Confidence 3445554 334478999999999999999994 53
No 222
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=58.94 E-value=13 Score=24.79 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=19.7
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.++ + .+++|+.|.+|++|++++.
T Consensus 53 ~~i-~-~~~dG~~v~~g~~i~~i~G 75 (302)
T cd01571 53 VKV-Y-ALPEGTIFNPKEPVLRIEG 75 (302)
T ss_pred eEE-E-EeCCCCEECCCCcEEEEEe
Confidence 455 3 5899999999999999986
No 223
>KOG1668|consensus
Probab=56.23 E-value=8 Score=25.22 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=24.7
Q ss_pred EEEEcCCCCEEcCCCeEEEEecCceEEE
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQTDKAVMS 41 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~~k~~~~ 41 (64)
..|++..|..+++=|+.|.||.+|...+
T Consensus 180 asklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 180 ASKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred cccccccccceeeEEEEEEEEcCccccc
Confidence 3589999999999999999999987654
No 224
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=54.05 E-value=7 Score=27.55 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 12 TIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 12 ~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
-.-.+.|..|+.|..|++|+.+-+.
T Consensus 369 ~~~~i~v~~G~~V~AGepIa~~G~s 393 (420)
T COG4942 369 GNQSILVNPGQFVKAGEPIALVGSS 393 (420)
T ss_pred ccceeeecCCCEeecCCchhhccCC
Confidence 3457899999999999999998654
No 225
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=53.63 E-value=4.3 Score=23.85 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=9.8
Q ss_pred EEcCCCCEEcCCCeEEE
Q psy10440 16 WLKKEGDAVAPGDVLCE 32 (64)
Q Consensus 16 w~v~~G~~V~~g~~l~~ 32 (64)
..|.+|+.|+.||+|-.
T Consensus 46 LiV~eG~~V~~dqpLT~ 62 (118)
T PF01333_consen 46 LIVSEGQSVKADQPLTN 62 (118)
T ss_dssp BS--TT-EETTT-BSB-
T ss_pred EEEcCCCEEecCCcccC
Confidence 46789999999998743
No 226
>KOG0368|consensus
Probab=50.93 E-value=27 Score=29.13 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=30.2
Q ss_pred EEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440 23 AVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 23 ~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~ 60 (64)
.+.-|--.|.+|...-...++||.+|.+++..++.|+.
T Consensus 669 rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~h 706 (2196)
T KOG0368|consen 669 RLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEH 706 (2196)
T ss_pred EEEECCeEEEEecCCCcceecCCCCccceEEEecCCCc
Confidence 35556666666666666789999999999999999985
No 227
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=50.86 E-value=20 Score=30.95 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=28.4
Q ss_pred EEEcCCCCEEcCCCeEEEE--ecCce--------------------EEEEecCCCeEEE
Q psy10440 15 KWLKKEGDAVAPGDVLCEI--QTDKA--------------------VMSFETEEEGILA 51 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~~i--e~~k~--------------------~~~i~ap~~G~i~ 51 (64)
.+.|++|+.|.+||+|+.+ ++.|+ ...+-|+++|+|.
T Consensus 2525 ~l~v~~g~~v~~Gdilakipr~~~~t~DIT~GLpRv~eLFEar~pk~~a~isei~G~V~ 2583 (2836)
T PRK14844 2525 VLNVQDGQKVHAGDVITRTPRESVKTRDITGGLPRVIELFEARRPKEHAIVSEIDGYVA 2583 (2836)
T ss_pred eEeeccCceecccceeecccccccccCccCCCCccchheeeeecCCCceEEecCCcEEE
Confidence 3578999999999999988 44331 1248899999885
No 228
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=50.16 E-value=8.2 Score=25.23 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=9.6
Q ss_pred EEEcCCCCEEcCCCeEE
Q psy10440 15 KWLKKEGDAVAPGDVLC 31 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~ 31 (64)
+|.++.|+.|..||.|+
T Consensus 247 ~~~v~~g~~V~~Ge~ig 263 (265)
T PRK03934 247 EFNLKAGKSVKFGESIG 263 (265)
T ss_pred eEccCCCCEEEcchhhc
Confidence 45555555565555554
No 229
>PRK02259 aspartoacylase; Provisional
Probab=49.98 E-value=52 Score=21.60 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=28.4
Q ss_pred EcCCC--CEEcCCCeEEEEecCceEEEEecCCCeEEEEEe
Q psy10440 17 LKKEG--DAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 54 (64)
Q Consensus 17 ~v~~G--~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~ 54 (64)
.++.+ +.|++||+|+.. .+.....+.++.+++.+-++
T Consensus 231 ~v~~~d~~~v~~G~~lf~~-~~g~~~~~~~~~~~~pvfin 269 (288)
T PRK02259 231 QLQGRDWQPLKPGDPLFLT-FDGKTIFYEGDSTVYPVFIN 269 (288)
T ss_pred hhcCCCccccCCCCcceec-CCCCEEEecCCCCEEeEEec
Confidence 44456 669999999988 55568889999988886553
No 230
>KOG0369|consensus
Probab=49.28 E-value=21 Score=27.50 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=24.8
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
-..|++.++++..|..+..||.|+++|
T Consensus 1149 P~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1149 PHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred CCCceeeEEEecCCCcccccceEEEcc
Confidence 456999999999999999999999987
No 231
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=45.00 E-value=64 Score=21.02 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=24.3
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCC
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEE 47 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~ 47 (64)
|.|. ...+|+.+++||.++.++-. .+..+.-|.+
T Consensus 202 g~I~--~~~~g~~v~kGee~G~F~fG-Stvvllf~~~ 235 (259)
T PRK03140 202 NSIE--LTHERDTVQKGEEMAYFSFG-STVVLLFEKD 235 (259)
T ss_pred eEEE--EecCCCEEecCcEeeeeccC-CeEEEEEeCC
Confidence 4555 23579999999999999887 5555555543
No 232
>PF01016 Ribosomal_L27: Ribosomal L27 protein; InterPro: IPR001684 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L27 is a protein from the large (50S) subunit; it is essential for ribosome function, but its exact role is unclear. It belongs to a family of ribosomal proteins, examples of which are found in bacteria, chloroplasts of plants and red algae and the mitochondria of fungi (e.g. MRP7 from yeast mitochondria). The schematic relationship between these groups of proteins is shown below. Bacterial L27 Nxxxxxxxxx Algal L27 Nxxxxxxxxx Plant L27 tttttNxxxxxxxxxxxxx Yeast MRP7 tttNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 't': transit peptide. 'N': N-terminal of mature protein. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZJQ_T 2ZJP_T 3PIP_T 3DLL_T 3PIO_T 1Y69_U 3CF5_T 2ZJR_T 1VSA_U 3PYT_W ....
Probab=43.21 E-value=48 Score=18.21 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=31.3
Q ss_pred EEEEcCCCCEEcCCCeEEEEecCce----------EEEEecCCCeEEEEEecC
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQTDKA----------VMSFETEEEGILAKILVP 56 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~~k~----------~~~i~ap~~G~i~~~~~~ 56 (64)
.-|....|+.|.+|.+|..--..+. ...|.|-.+|+| .+...
T Consensus 20 lGvK~~~G~~V~~G~IivRQRgtk~hPG~NVg~GrD~TLfAl~~G~V-~f~~~ 71 (81)
T PF01016_consen 20 LGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGRDHTLFALVDGRV-KFTKE 71 (81)
T ss_dssp SEESSSTTCEESSTSEEEEBSSSSSEEBTTEEEETTSEEEESSSCEE-EEEEE
T ss_pred cEEEEeCCEEEcCCCEEEEeCCCcCcCCCCEEECCCCcEEEecCEEE-EEEEe
Confidence 4577889999999999998644332 346999999998 44433
No 233
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=43.00 E-value=20 Score=17.65 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=19.3
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEE
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLC 31 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~ 31 (64)
...|+|.+-....|..+.+|+.|-
T Consensus 35 ~~~g~V~~Q~P~~G~~v~~~~~I~ 58 (63)
T PF03793_consen 35 VPKGTVISQSPAPGTKVKKGSKIT 58 (63)
T ss_dssp SSTTSEEEESSCTTSEEETTSEEE
T ss_pred CCCCEEEEEECCCCCCcCCCCEEE
Confidence 345778888999999999988664
No 234
>cd06577 PASTA_pknB PASTA domain of bacterial serine/threonine kinase pknB-like proteins. PknB is a member of a group of related transmembrane sensor kinases present in many gram positive bacteria, which has been shown to regulate cell shape in Mycobacterium tubercolosis. PknB is a receptor-like transmembrane protein with an extracellular signal sensor domain (containing multiple PASTA domains) and an intracellular, eukaryotic serine/threonine kinase-like domain. The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBPs) and bacterial serine/threonine kinases. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain.
Probab=42.60 E-value=38 Score=15.69 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=16.2
Q ss_pred CeEEEEEEEcCCCCEEcCCCeE
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVL 30 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l 30 (64)
..|.|.+-....|+.+..|+.|
T Consensus 36 ~~g~V~~q~p~~G~~v~~~~~i 57 (62)
T cd06577 36 PKGTVISQSPAAGTKVKKGSTV 57 (62)
T ss_pred CCCEEEEecCCCCCccCCCCEE
Confidence 4577777778888888877754
No 235
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=41.11 E-value=76 Score=23.48 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=24.8
Q ss_pred EcCCCCEEcCCCeEEEEecC-ceEEE--EecCCCeEEEEE
Q psy10440 17 LKKEGDAVAPGDVLCEIQTD-KAVMS--FETEEEGILAKI 53 (64)
Q Consensus 17 ~v~~G~~V~~g~~l~~ie~~-k~~~~--i~ap~~G~i~~~ 53 (64)
.++.||.|..||.++.+.-. -.... +..-..|+++.+
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i 162 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI 162 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE
Confidence 47889999999999998543 22333 333346777555
No 236
>KOG0238|consensus
Probab=41.08 E-value=24 Score=26.10 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=24.0
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
-.+|++..+.++.|+.+..|..|.++|
T Consensus 644 pk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 644 PKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CCCCceeeEeeecCcccCCCceEEEeC
Confidence 356999999999999999999998864
No 237
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=40.78 E-value=71 Score=23.61 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=25.3
Q ss_pred cCCCCEEcCCCeEEEE-ecCceEEEE--ecCCCeEEEEE
Q psy10440 18 KKEGDAVAPGDVLCEI-QTDKAVMSF--ETEEEGILAKI 53 (64)
Q Consensus 18 v~~G~~V~~g~~l~~i-e~~k~~~~i--~ap~~G~i~~~ 53 (64)
++.||.|..||.++++ |+.-....| ..-+.|+|+.+
T Consensus 121 ~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i 159 (578)
T TIGR01043 121 VKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI 159 (578)
T ss_pred cccCccccCCceEEEEecccceeeeeecCCCCcceEEEe
Confidence 7889999999999988 444334433 23357888665
No 238
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=40.62 E-value=29 Score=22.54 Aligned_cols=21 Identities=5% Similarity=0.047 Sum_probs=18.2
Q ss_pred EEEEecCCCeEEEEEecCCCC
Q psy10440 39 VMSFETEEEGILAKILVPENT 59 (64)
Q Consensus 39 ~~~i~ap~~G~i~~~~~~~g~ 59 (64)
-.-.+||++|+|.+....+|.
T Consensus 124 yHr~haP~~G~i~~~~~~~G~ 144 (239)
T COG0688 124 YHRNHAPVDGTIIEVRYVPGK 144 (239)
T ss_pred eeeEeCCCCCEEEEEEEECCc
Confidence 345899999999999988886
No 239
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=40.49 E-value=34 Score=21.96 Aligned_cols=21 Identities=14% Similarity=0.050 Sum_probs=18.1
Q ss_pred EEEEecCCCeEEEEEecCCCC
Q psy10440 39 VMSFETEEEGILAKILVPENT 59 (64)
Q Consensus 39 ~~~i~ap~~G~i~~~~~~~g~ 59 (64)
-.-.+||++|+|.+...-+|+
T Consensus 96 YHr~hsPv~G~v~~~~~ipG~ 116 (238)
T TIGR00163 96 YHRFHSPCDCRLRKMRYFPGD 116 (238)
T ss_pred eeEEeccCCcEEEEEEEcCcc
Confidence 446999999999999888886
No 240
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=40.18 E-value=1e+02 Score=19.82 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=21.3
Q ss_pred EEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440 15 KWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~ 59 (64)
.....+|..++.||.|- +++.. ..|+++.+.+|+
T Consensus 66 ~vel~~gE~l~vGDei~-vd~e~----------veITSIE~~~gk 99 (201)
T COG1326 66 EVELDPGETLKVGDEIE-VDGEE----------VEITSIELGGGK 99 (201)
T ss_pred eEecCCCCeEecCCEEE-EcCCE----------EEEEEEeeCCCc
Confidence 44568899999999663 44443 445555555554
No 241
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=36.64 E-value=49 Score=22.55 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=21.7
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
.....+..+..|+.|.+|++|+.+-
T Consensus 221 ~~~~i~l~~~~G~fV~~g~pl~~v~ 245 (371)
T PF10011_consen 221 HDVVIRLEVRPGDFVVEGTPLARVW 245 (371)
T ss_pred CCcEEEEEeCCCCeECCCCeEEEEe
Confidence 3556888999999999999999983
No 242
>cd06575 PASTA_Pbp2x-like_2 PASTA domain of PBP2x-like proteins, second repeat. Penicillin-binding proteins (PBPs) are the major targets for beta-lactam antibiotics, like penicillins and cephalosporins. Beta-lactam antibiotics specifically inhibit transpeptidase activity by acylating the active site serine. PBPs catalyze key steps in the synthesis of the peptidoglycan, such as the interconnecting of glycan chains (polymers of N-glucosamine and N-acetylmuramic acid residues) and the cross-linking (transpeptidation) of short stem peptides, which are attached to glycan chains. Peptidoglycan is essential in cell division and protects bacteria from osmotic shock and lysis. PBP2x is one of the two monofunctional high molecular mass PBPs in Streptococcus pneumoniae and has been seen as the primary PBP target in beta-lactam-resistant strains. The PASTA domain is found at the C-termini of several PBPs and bacterial serine/threonine kinases. The name PASTA is derived from PBP and Serine/Threonine
Probab=36.04 E-value=48 Score=14.99 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=15.3
Q ss_pred eEEEEEEEcCCCCEEcCCCeE
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVL 30 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l 30 (64)
.|.+.+-....|+.+..|+.+
T Consensus 29 ~g~v~~q~p~~g~~v~~~~~v 49 (54)
T cd06575 29 SGYVVSQSIAPGTKVKKGTTI 49 (54)
T ss_pred ceEEEEecCCCCCCCCCCCEE
Confidence 467777777788888777754
No 243
>PRK02693 apocytochrome f; Reviewed
Probab=33.59 E-value=29 Score=23.50 Aligned_cols=18 Identities=44% Similarity=0.702 Sum_probs=13.5
Q ss_pred EEEcCCCCEEcCCCeEEE
Q psy10440 15 KWLKKEGDAVAPGDVLCE 32 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~~ 32 (64)
+..|.+|+.|+.||+|-.
T Consensus 239 eliV~eG~~v~~dqpLTn 256 (312)
T PRK02693 239 ELIVKEGDTVEAGDPLTN 256 (312)
T ss_pred eEEEecCcEEecCCcccC
Confidence 456788888888887753
No 244
>smart00740 PASTA PASTA domain.
Probab=32.05 E-value=64 Score=15.17 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=15.3
Q ss_pred CeEEEEEEEcCCCCEEcCCCeE
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVL 30 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l 30 (64)
..|.|.+-....|+.+..|+.|
T Consensus 39 ~~g~V~~q~p~~G~~v~~~~~i 60 (66)
T smart00740 39 EEGTVIKQSPAAGTTVKPGSKV 60 (66)
T ss_pred CCCEEEEeCCCCCCCcCCCCEE
Confidence 3466777777777777777754
No 245
>CHL00037 petA cytochrome f
Probab=31.32 E-value=32 Score=23.47 Aligned_cols=17 Identities=24% Similarity=0.394 Sum_probs=12.7
Q ss_pred EEEcCCCCEEcCCCeEE
Q psy10440 15 KWLKKEGDAVAPGDVLC 31 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~ 31 (64)
+..|.+||.|+.||+|-
T Consensus 247 ~LiVs~G~~v~~~qpLT 263 (320)
T CHL00037 247 ELLVSEGESIKLDQPLT 263 (320)
T ss_pred eEEEecCceEecCCccc
Confidence 45677888888888774
No 246
>KOG3008|consensus
Probab=29.11 E-value=74 Score=21.23 Aligned_cols=22 Identities=27% Similarity=0.653 Sum_probs=19.3
Q ss_pred EEEEcCCCCEEcCCCeEEEEec
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
++|+.++|+.+.++--++.+..
T Consensus 73 VEW~~KeGs~l~p~~~vaKv~G 94 (300)
T KOG3008|consen 73 VEWFLKEGSKLVPVARVAKVRG 94 (300)
T ss_pred EEEEecCCCeecccceeEeecC
Confidence 7999999999999998887753
No 247
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=27.02 E-value=77 Score=20.95 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=17.9
Q ss_pred EEEEecCCCeEEEEEecCCCC
Q psy10440 39 VMSFETEEEGILAKILVPENT 59 (64)
Q Consensus 39 ~~~i~ap~~G~i~~~~~~~g~ 59 (64)
-.-.+||++|+|.+...-+|.
T Consensus 143 YHr~HsPv~G~v~~~~~i~G~ 163 (288)
T PRK00044 143 YHRVHMPCDGTLREMIYVPGD 163 (288)
T ss_pred eeEEeccCCcEEEEEEEeCCc
Confidence 346999999999999888886
No 248
>PLN02938 phosphatidylserine decarboxylase
Probab=26.39 E-value=28 Score=24.68 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.0
Q ss_pred EEEEEcCCCCEEcCCCeEEEEe
Q psy10440 13 IVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l~~ie 34 (64)
-.+|.++.|+.|+-||.|+.+.
T Consensus 405 ~~~~~l~~G~~Vk~Gq~LG~~~ 426 (428)
T PLN02938 405 DFRFCVRKGDRIRVGQALGRWM 426 (428)
T ss_pred CccccccCCCEEEcchhhcccc
Confidence 4689999999999999998654
No 249
>CHL00121 rpl27 ribosomal protein L27; Reviewed
Probab=26.10 E-value=1.3e+02 Score=16.76 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=34.0
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCce----------EEEEecCCCeEEEEEe
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKA----------VMSFETEEEGILAKIL 54 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~----------~~~i~ap~~G~i~~~~ 54 (64)
+.++=.-|..-.|+.|.+|++|..--..+. ...|.|-.+|.| ++.
T Consensus 16 S~~KrLGvK~~~gq~V~~G~IivRQRGtk~hPG~NVg~GrD~TlfAl~~G~V-~f~ 70 (86)
T CHL00121 16 SNAKRLGVKRFGGEKVSAGNILIRQRGTKFKPGLNVGCGKDFTLYALIDGFV-KFK 70 (86)
T ss_pred CCcccceeEEcCCEEEcCCcEEEEcCCCeECCCCcccccCCceEEEccceEE-EEE
Confidence 456667788899999999999987544322 457999999998 443
No 250
>CHL00207 rpoB RNA polymerase beta subunit; Provisional
Probab=25.84 E-value=51 Score=26.10 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=17.0
Q ss_pred EEEcCCCCEEcCCCeEEEEec
Q psy10440 15 KWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~~ie~ 35 (64)
+-.|..|+.|++||+|+.=-+
T Consensus 618 rp~V~~G~~v~~G~iladg~~ 638 (1077)
T CHL00207 618 RPIVWVGEKINIGQILADGSD 638 (1077)
T ss_pred ccccCCCCEEecCCEEecchh
Confidence 457889999999999996433
No 251
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=23.97 E-value=59 Score=21.29 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=22.1
Q ss_pred EEcCCCeEEEEec--------CceEEEEecCCCeEEE
Q psy10440 23 AVAPGDVLCEIQT--------DKAVMSFETEEEGILA 51 (64)
Q Consensus 23 ~V~~g~~l~~ie~--------~k~~~~i~ap~~G~i~ 51 (64)
++.+||.|+.|.. .|+...+.+|.+|.|.
T Consensus 35 tL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il 71 (267)
T COG4167 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEIL 71 (267)
T ss_pred EecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEE
Confidence 5678899998854 2456679999999883
No 252
>PF09923 DUF2155: Uncharacterized protein conserved in bacteria (DUF2155); InterPro: IPR019225 This entry contains various hypothetical prokaryotic proteins that have no known function.
Probab=23.70 E-value=1.4e+02 Score=16.47 Aligned_cols=49 Identities=12% Similarity=0.239 Sum_probs=32.8
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCC
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 57 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~ 57 (64)
..|.+..+.+..|+.+.-|.....+..-....+-.+|-+.-..++.+.+
T Consensus 9 itg~~~~~~v~~G~~~~~g~L~i~~~~C~~r~p~~~p~~~Af~~v~~~~ 57 (90)
T PF09923_consen 9 ITGRVTDFEVPVGETVQFGNLTITLRACVSRPPTENPDTDAFVQVTIRE 57 (90)
T ss_pred ccCeEEEEEEcCCCEEEEccEEEEhhheecCCCCCCcCccceEEEEEcC
Confidence 4689999999999999999887777654333333344444444554433
No 253
>cd06573 PASTA PASTA domain. This domain is found at the C-termini of several Penicillin-binding proteins (PBPs) and bacterial serine/threonine kinases. It is a small globular fold consisting of 3 beta-sheets and an alpha-helix. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain.
Probab=23.57 E-value=66 Score=14.47 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=13.0
Q ss_pred EEEEEcCCCCEEcCCCeE
Q psy10440 13 IVKWLKKEGDAVAPGDVL 30 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l 30 (64)
|.+-....|+.+.+|+.|
T Consensus 32 v~~q~p~~g~~v~~~~~i 49 (53)
T cd06573 32 VVKQSPEAGTKVAEGSTI 49 (53)
T ss_pred EEEeCCCCCCCcCCCCEE
Confidence 666667778888887753
No 254
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=23.54 E-value=1.1e+02 Score=20.64 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=18.3
Q ss_pred EEcCCCCEEcCCCeEEEEec
Q psy10440 16 WLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 16 w~v~~G~~V~~g~~l~~ie~ 35 (64)
|.+++|+.+..++++.+||.
T Consensus 90 ~a~~EG~~v~~~~pvl~IeG 109 (327)
T cd01570 90 YAIPEGEVVFPNEPLLTVEG 109 (327)
T ss_pred EEecCCceecCCcEEEEEEE
Confidence 56899999999999999986
No 255
>TIGR00062 L27 ribosomal protein L27. Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain.
Probab=22.75 E-value=1.5e+02 Score=16.37 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=34.3
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCce----------EEEEecCCCeEEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKA----------VMSFETEEEGILAKILV 55 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~----------~~~i~ap~~G~i~~~~~ 55 (64)
+.++=.-|.+-.|+.|.+|.+|..--..|. ...|.|-.+|+| ++..
T Consensus 16 S~~krLGvK~~~gq~V~~G~IivRQRGtk~hPG~nVg~GrD~TlfAl~~G~V-~f~~ 71 (83)
T TIGR00062 16 SEAKRLGVKRAGGQFVRAGSIIVRQRGTKFHPGNNVGMGKDHTLFALSDGVV-KFEK 71 (83)
T ss_pred CCCccceeEecCCEEEcCCcEEEEcCCceECCCCcccccCCCeEEEecceEE-EEEE
Confidence 456667788899999999999987644332 457999999998 4443
No 256
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.63 E-value=63 Score=20.79 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=27.2
Q ss_pred CCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 3 SLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 3 ~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.++++....-|.+-.+..||.+.-|+.+.++..
T Consensus 80 ~fGENltt~Gl~e~~l~iGdr~riG~allEVSq 112 (210)
T COG2258 80 AFGENLTTSGLDEANLCIGDRFRIGEALLEVTQ 112 (210)
T ss_pred cccCceeecCcchhhccccCEEEeccEEEEecC
Confidence 567776666678888999999999999998854
No 257
>TIGR00307 S8e ribosomal protein S8.e. Archaeal and eukaryotic ribosomal protein S8. This model could easily have been split into two models, one for eukaryotic S8 and one for archaeal S8; eukaryotic forms invariably have in insert of about 80 residues that archaeal forms of S8 do not.
Probab=22.16 E-value=1.9e+02 Score=17.23 Aligned_cols=27 Identities=15% Similarity=0.356 Sum_probs=20.5
Q ss_pred EEEEecCceEEEEecCCCeEEEEEecC
Q psy10440 30 LCEIQTDKAVMSFETEEEGILAKILVP 56 (64)
Q Consensus 30 l~~ie~~k~~~~i~ap~~G~i~~~~~~ 56 (64)
|.++|..++.+.-++-++|.|-.++++
T Consensus 100 IIetd~g~A~VTsrPgQdG~vNavll~ 126 (127)
T TIGR00307 100 IVETDIGYARVTSRPGQDGVVNGVLIE 126 (127)
T ss_pred EEEEeeeEEEEecCCCcCceEeEEEec
Confidence 345566788888899999998777664
No 258
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=22.07 E-value=77 Score=16.45 Aligned_cols=12 Identities=8% Similarity=0.304 Sum_probs=5.1
Q ss_pred EEEEecCCCeEE
Q psy10440 39 VMSFETEEEGIL 50 (64)
Q Consensus 39 ~~~i~ap~~G~i 50 (64)
..++..++.|.+
T Consensus 23 ~v~i~~~~~G~l 34 (86)
T cd05789 23 KVDINSPYDAVL 34 (86)
T ss_pred EEECCCCeEEEE
Confidence 333444444444
No 259
>TIGR02386 rpoC_TIGR DNA-directed RNA polymerase, beta' subunit, predominant form. Bacteria have a single DNA-directed RNA polymerase, with required subunits that include alpha, beta, and beta-prime. This model describes the predominant architecture of the beta-prime subunit in most bacteria. This model excludes from among the bacterial mostly sequences from the cyanobacteria, where RpoC is replaced by two tandem genes homologous to it but also encoding an additional domain.
Probab=21.86 E-value=57 Score=26.02 Aligned_cols=18 Identities=44% Similarity=0.680 Sum_probs=15.0
Q ss_pred EEEcCCCCEEcCCCeEEE
Q psy10440 15 KWLKKEGDAVAPGDVLCE 32 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~~ 32 (64)
.+.|++||.|++||.|.+
T Consensus 967 ~l~v~~gd~V~~G~~l~~ 984 (1140)
T TIGR02386 967 QLRVKDGDSVSAGDKLTE 984 (1140)
T ss_pred eEEecCCCEEccCCcccC
Confidence 456899999999998874
No 260
>PF14382 ECR1_N: Exosome complex exonuclease RRP4 N-terminal region; PDB: 2NN6_I 3M7N_C 2BA1_A 3M85_C.
Probab=20.80 E-value=1e+02 Score=14.31 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=16.3
Q ss_pred EcCCCeEEEEecC---ce----EEEEecCCCeEEEE
Q psy10440 24 VAPGDVLCEIQTD---KA----VMSFETEEEGILAK 52 (64)
Q Consensus 24 V~~g~~l~~ie~~---k~----~~~i~ap~~G~i~~ 52 (64)
|-.||.|+..+.- .. .-.|+|-..|.+..
T Consensus 2 V~PG~~l~~~~e~~~G~GTY~~~g~I~asv~G~v~~ 37 (39)
T PF14382_consen 2 VVPGDRLGSSEEYMPGHGTYVRDGNIYASVAGTVKI 37 (39)
T ss_dssp E-TT-EEEETTTSEESTTEEEETTEEEESSSEEEEE
T ss_pred CCCCCEeecCCCEecCCCEEEeCCEEEEEeeEEEEE
Confidence 4467777775421 11 22589999998853
No 261
>PRK00723 phosphatidylserine decarboxylase; Provisional
Probab=20.68 E-value=95 Score=20.75 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=17.7
Q ss_pred EEEEecCCCeEEEEEecCCCC
Q psy10440 39 VMSFETEEEGILAKILVPENT 59 (64)
Q Consensus 39 ~~~i~ap~~G~i~~~~~~~g~ 59 (64)
-.-..||++|+|.+...-+|+
T Consensus 165 YHR~HsPv~G~v~~~~~i~G~ 185 (297)
T PRK00723 165 YHRFHFPDSGICEETRKIKGH 185 (297)
T ss_pred EEEEEccCCcEEEEEEEECCe
Confidence 446999999999998877775
No 262
>KOG3266|consensus
Probab=20.34 E-value=2.3e+02 Score=17.66 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=28.0
Q ss_pred CCCCEEcCCCeEEEEecCc-eEEEEecCCCeEEEEEec
Q psy10440 19 KEGDAVAPGDVLCEIQTDK-AVMSFETEEEGILAKILV 55 (64)
Q Consensus 19 ~~G~~V~~g~~l~~ie~~k-~~~~i~ap~~G~i~~~~~ 55 (64)
+-+...++..+||.+-+.+ .+.-++|=+.|++++.+-
T Consensus 85 kgAl~lq~~s~Lc~~~~a~g~~y~V~scVrG~LvEvN~ 122 (172)
T KOG3266|consen 85 KGALILQELSPLCKFKTADGSTYVVRSCVRGTLVEVNE 122 (172)
T ss_pred cccEeeccCCcceeEEecCCCeEEEeeeeceeEEEeeh
Confidence 3334566778888888776 678899999999988753
No 263
>TIGR03670 rpoB_arch DNA-directed RNA polymerase subunit B. This model represents the archaeal version of DNA-directed RNA polymerase subunit B (rpoB) and is observed in all archaeal genomes.
Probab=20.08 E-value=3e+02 Score=20.46 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=26.0
Q ss_pred cCCCCEEcCCCeEEEEec------------------CceEEEEecCCCeEEEEEec
Q psy10440 18 KKEGDAVAPGDVLCEIQT------------------DKAVMSFETEEEGILAKILV 55 (64)
Q Consensus 18 v~~G~~V~~g~~l~~ie~------------------~k~~~~i~ap~~G~i~~~~~ 55 (64)
+..|+.|..||+|+---+ ......++....|+|.++..
T Consensus 277 ~~~G~~v~~gdiligk~~p~~~~~~~~~~~~~~~~~~d~s~~~~~~e~g~Vd~V~~ 332 (599)
T TIGR03670 277 VYPEVEVKGGDVLIGKTSPPRFLEELRELGLVTERRRDTSVTVRHGEKGIVDKVII 332 (599)
T ss_pred cCCCcEeCCCCEEEEEecCCCCccchhhhccccccCceEEEEecCCCcEEEEEEEE
Confidence 468999999999983311 11244567778898887654
Done!