Query psy10440
Match_columns 64
No_of_seqs 130 out of 1157
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 18:14:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10440.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10440hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3crk_C Dihydrolipoyllysine-res 99.8 1E-18 3.4E-23 95.7 9.2 59 1-59 10-68 (87)
2 1k8m_A E2 component of branche 99.8 9.3E-19 3.2E-23 97.2 7.4 62 1-63 9-70 (93)
3 2dnc_A Pyruvate dehydrogenase 99.8 1.3E-18 4.5E-23 97.5 8.0 60 1-60 12-71 (98)
4 1ghj_A E2, E2, the dihydrolipo 99.8 1.6E-18 5.4E-23 93.1 7.3 62 1-63 6-67 (79)
5 2dne_A Dihydrolipoyllysine-res 99.8 3.3E-18 1.1E-22 97.4 7.7 59 1-59 12-70 (108)
6 1y8o_B Dihydrolipoyllysine-res 99.8 8.8E-18 3E-22 98.3 9.2 59 1-59 32-90 (128)
7 2l5t_A Lipoamide acyltransfera 99.7 7.7E-18 2.6E-22 90.0 6.4 62 1-63 6-67 (77)
8 1qjo_A Dihydrolipoamide acetyl 99.7 4E-17 1.4E-21 87.6 7.2 60 1-63 7-66 (80)
9 1pmr_A Dihydrolipoyl succinylt 99.7 5.7E-19 2E-23 95.3 -2.0 62 1-63 7-68 (80)
10 1gjx_A Pyruvate dehydrogenase; 99.7 3.9E-17 1.3E-21 87.9 4.0 59 1-60 7-65 (81)
11 1iyu_A E2P, dihydrolipoamide a 99.7 2.5E-16 8.4E-21 84.5 6.8 59 1-63 6-64 (79)
12 1zy8_K Pyruvate dehydrogenase 99.7 5.6E-18 1.9E-22 106.9 0.0 63 1-63 8-70 (229)
13 3dva_I Dihydrolipoyllysine-res 99.7 5.6E-18 1.9E-22 114.3 0.0 63 1-64 7-69 (428)
14 1z6h_A Biotin/lipoyl attachmen 99.6 3.3E-14 1.1E-18 74.5 8.4 52 9-60 6-57 (72)
15 2kcc_A Acetyl-COA carboxylase 99.5 1.5E-14 5.3E-19 78.6 6.2 54 8-63 11-64 (84)
16 2dn8_A Acetyl-COA carboxylase 99.5 7.9E-14 2.7E-18 77.8 7.6 52 8-60 23-74 (100)
17 2d5d_A Methylmalonyl-COA decar 99.5 2.9E-13 1E-17 71.0 8.3 53 8-60 11-63 (74)
18 1dcz_A Transcarboxylase 1.3S s 99.5 2.8E-13 9.5E-18 71.8 7.6 52 9-60 15-66 (77)
19 2k7v_A Dihydrolipoyllysine-res 99.5 2E-15 7E-20 82.1 -1.0 52 11-63 11-62 (85)
20 1bdo_A Acetyl-COA carboxylase; 99.4 3.1E-13 1.1E-17 72.3 6.3 54 9-63 11-71 (80)
21 3n6r_A Propionyl-COA carboxyla 99.4 3.8E-13 1.3E-17 94.6 8.2 54 9-63 619-672 (681)
22 2jku_A Propionyl-COA carboxyla 99.4 4.3E-14 1.5E-18 78.3 2.7 52 9-60 32-83 (94)
23 2ejm_A Methylcrotonoyl-COA car 99.4 5.6E-13 1.9E-17 74.3 7.0 52 8-59 20-71 (99)
24 3va7_A KLLA0E08119P; carboxyla 99.4 1.2E-12 4.2E-17 96.7 8.0 54 9-63 1174-1227(1236)
25 3hbl_A Pyruvate carboxylase; T 99.4 2.4E-12 8E-17 94.6 8.1 54 9-63 1084-1137(1150)
26 3u9t_A MCC alpha, methylcroton 99.3 2.6E-13 8.9E-18 95.3 0.0 54 9-63 609-662 (675)
27 1zko_A Glycine cleavage system 99.2 2.6E-11 9E-16 71.4 6.7 49 11-59 45-97 (136)
28 1hpc_A H protein of the glycin 99.2 2E-11 6.7E-16 71.6 3.9 48 11-58 36-84 (131)
29 3a7l_A H-protein, glycine clea 99.2 6.2E-11 2.1E-15 69.2 6.0 49 11-59 37-86 (128)
30 1onl_A Glycine cleavage system 99.1 1.4E-10 4.7E-15 67.7 6.3 46 11-56 36-82 (128)
31 3bg3_A Pyruvate carboxylase, m 99.1 1.5E-11 5.1E-16 87.3 2.4 54 9-63 656-709 (718)
32 2k32_A A; NMR {Campylobacter j 99.1 9.7E-11 3.3E-15 66.2 5.1 52 9-60 8-88 (116)
33 2qf7_A Pyruvate carboxylase pr 99.1 3.9E-11 1.3E-15 88.3 4.2 54 9-63 1102-1155(1165)
34 3klr_A Glycine cleavage system 99.0 1.6E-09 5.6E-14 63.0 6.3 49 11-59 32-81 (125)
35 3mxu_A Glycine cleavage system 98.9 3.7E-09 1.3E-13 62.7 6.2 48 11-58 54-102 (143)
36 3tzu_A GCVH, glycine cleavage 98.9 4.3E-09 1.5E-13 62.1 5.4 45 11-55 49-94 (137)
37 3hgb_A Glycine cleavage system 98.8 1.1E-08 3.7E-13 61.4 5.8 44 12-55 60-104 (155)
38 3fpp_A Macrolide-specific effl 98.5 1.6E-07 5.5E-12 60.3 5.4 28 9-36 38-65 (341)
39 3lnn_A Membrane fusion protein 98.5 2.7E-07 9.1E-12 59.6 6.4 28 9-36 64-91 (359)
40 3ne5_B Cation efflux system pr 98.5 5.3E-07 1.8E-11 60.0 7.4 52 9-60 128-228 (413)
41 2f1m_A Acriflavine resistance 98.4 7E-08 2.4E-12 60.5 1.9 27 9-35 29-55 (277)
42 1vf7_A Multidrug resistance pr 98.3 2.7E-07 9.3E-12 60.3 2.1 52 9-60 50-158 (369)
43 4dk0_A Putative MACA; alpha-ha 97.9 2.7E-07 9.3E-12 59.7 -3.6 28 9-36 39-66 (369)
44 3cdx_A Succinylglutamatedesucc 97.8 0.00013 4.5E-09 47.8 7.4 48 12-59 276-331 (354)
45 3na6_A Succinylglutamate desuc 97.6 0.00022 7.5E-09 46.5 7.1 49 11-59 265-321 (331)
46 3fmc_A Putative succinylglutam 97.6 0.00023 7.8E-09 47.1 6.3 49 11-59 298-356 (368)
47 2qj8_A MLR6093 protein; struct 97.2 0.0018 6.3E-08 41.9 7.2 49 11-59 265-321 (332)
48 3d4r_A Domain of unknown funct 97.2 0.00097 3.3E-08 40.3 5.2 49 10-58 108-157 (169)
49 2l5t_A Lipoamide acyltransfera 96.8 0.0024 8.3E-08 32.9 4.4 27 9-35 51-77 (77)
50 1bdo_A Acetyl-COA carboxylase; 96.7 0.0027 9.1E-08 33.0 4.1 26 9-34 55-80 (80)
51 1z6h_A Biotin/lipoyl attachmen 96.6 0.0034 1.2E-07 31.8 3.9 28 9-36 43-70 (72)
52 1ghj_A E2, E2, the dihydrolipo 96.5 0.0043 1.5E-07 32.2 4.1 27 9-35 51-77 (79)
53 1k8m_A E2 component of branche 96.4 0.0084 2.9E-07 32.3 5.1 28 9-36 54-81 (93)
54 1qjo_A Dihydrolipoamide acetyl 96.4 0.0028 9.6E-08 32.9 3.0 28 9-36 50-77 (80)
55 3crk_C Dihydrolipoyllysine-res 96.2 0.0092 3.1E-07 31.6 4.4 28 9-36 55-83 (87)
56 1iyu_A E2P, dihydrolipoamide a 96.2 0.0055 1.9E-07 31.8 3.3 28 9-36 48-75 (79)
57 2d5d_A Methylmalonyl-COA decar 96.1 0.01 3.5E-07 30.0 4.0 26 9-34 49-74 (74)
58 2auk_A DNA-directed RNA polyme 96.1 0.016 5.4E-07 35.3 5.3 44 14-59 62-105 (190)
59 1dcz_A Transcarboxylase 1.3S s 95.8 0.0076 2.6E-07 30.8 2.8 26 9-34 52-77 (77)
60 2xha_A NUSG, transcription ant 95.6 0.017 5.8E-07 35.6 4.2 33 15-53 22-54 (193)
61 2dn8_A Acetyl-COA carboxylase 95.5 0.015 5E-07 31.6 3.3 27 9-36 61-87 (100)
62 1y8o_B Dihydrolipoyllysine-res 95.4 0.022 7.6E-07 32.7 4.0 29 9-37 77-106 (128)
63 2k7v_A Dihydrolipoyllysine-res 95.4 0.0059 2E-07 32.2 1.3 28 9-36 46-73 (85)
64 2dnc_A Pyruvate dehydrogenase 95.2 0.014 4.8E-07 31.8 2.6 29 9-37 57-86 (98)
65 2dne_A Dihydrolipoyllysine-res 95.2 0.017 5.8E-07 32.1 2.9 28 9-36 57-85 (108)
66 1f3z_A EIIA-GLC, glucose-speci 95.0 0.017 5.8E-07 34.5 2.7 41 9-53 19-63 (161)
67 2jku_A Propionyl-COA carboxyla 94.5 0.0066 2.2E-07 32.8 0.0 26 9-34 69-94 (94)
68 1pmr_A Dihydrolipoyl succinylt 94.5 0.0045 1.5E-07 32.3 -0.7 27 9-35 52-78 (80)
69 2xhc_A Transcription antitermi 94.4 0.051 1.7E-06 36.0 4.2 34 14-53 61-94 (352)
70 2kcc_A Acetyl-COA carboxylase 94.3 0.024 8.1E-07 29.8 1.9 28 9-37 49-76 (84)
71 1ax3_A Iiaglc, glucose permeas 94.0 0.025 8.7E-07 33.8 1.8 42 8-53 18-63 (162)
72 2ejm_A Methylcrotonoyl-COA car 93.7 0.062 2.1E-06 29.0 2.9 29 9-37 58-86 (99)
73 3n6r_A Propionyl-COA carboxyla 93.6 0.093 3.2E-06 37.1 4.4 26 9-34 656-681 (681)
74 1gjx_A Pyruvate dehydrogenase; 92.9 0.011 3.7E-07 30.7 -0.9 28 9-36 51-78 (81)
75 2k32_A A; NMR {Campylobacter j 92.9 0.088 3E-06 28.8 2.8 22 40-62 2-23 (116)
76 2f1m_A Acriflavine resistance 92.2 0.3 1E-05 30.1 4.8 34 28-63 12-45 (277)
77 2bco_A Succinylglutamate desuc 91.8 0.1 3.5E-06 34.1 2.5 39 17-59 280-321 (350)
78 3our_B EIIA, phosphotransferas 91.7 0.16 5.3E-06 31.0 3.1 25 11-35 115-139 (183)
79 2gpr_A Glucose-permease IIA co 91.5 0.2 6.8E-06 29.6 3.3 22 14-35 91-112 (154)
80 3hbl_A Pyruvate carboxylase; T 91.1 0.25 8.6E-06 37.0 4.1 27 9-35 1121-1147(1150)
81 2gpr_A Glucose-permease IIA co 90.8 0.077 2.6E-06 31.4 1.1 41 9-53 14-58 (154)
82 3dva_I Dihydrolipoyllysine-res 90.8 0.044 1.5E-06 36.9 0.0 28 9-36 52-79 (428)
83 1f3z_A EIIA-GLC, glucose-speci 90.7 0.26 9E-06 29.3 3.3 22 14-35 96-117 (161)
84 1qpo_A Quinolinate acid phosph 90.4 0.35 1.2E-05 31.0 3.9 23 13-35 72-94 (284)
85 3va7_A KLLA0E08119P; carboxyla 90.4 0.37 1.3E-05 36.4 4.5 25 9-33 1211-1235(1236)
86 1x1o_A Nicotinate-nucleotide p 89.8 0.33 1.1E-05 31.2 3.5 22 14-35 74-95 (286)
87 3u9t_A MCC alpha, methylcroton 89.6 0.065 2.2E-06 37.8 0.0 28 9-36 646-673 (675)
88 2b7n_A Probable nicotinate-nuc 89.5 0.46 1.6E-05 30.1 3.9 22 14-35 60-81 (273)
89 3tqv_A Nicotinate-nucleotide p 89.5 0.37 1.2E-05 31.2 3.5 22 14-35 77-98 (287)
90 3lnn_A Membrane fusion protein 89.4 0.42 1.4E-05 30.5 3.7 34 29-63 46-80 (359)
91 3l0g_A Nicotinate-nucleotide p 89.0 0.43 1.5E-05 31.1 3.5 22 14-35 86-107 (300)
92 1ax3_A Iiaglc, glucose permeas 88.8 0.24 8.4E-06 29.4 2.1 22 14-35 96-117 (162)
93 1o4u_A Type II quinolic acid p 88.7 0.31 1.1E-05 31.3 2.8 22 14-35 73-94 (285)
94 3gnn_A Nicotinate-nucleotide p 88.6 0.46 1.6E-05 30.8 3.5 22 14-35 88-109 (298)
95 1qap_A Quinolinic acid phospho 88.3 0.49 1.7E-05 30.5 3.5 22 14-35 87-108 (296)
96 3it5_A Protease LASA; metallop 88.2 0.29 1E-05 29.4 2.2 23 13-35 82-104 (182)
97 3paj_A Nicotinate-nucleotide p 88.1 0.51 1.7E-05 30.9 3.5 23 13-35 109-131 (320)
98 1zy8_K Pyruvate dehydrogenase 87.7 0.1 3.5E-06 32.5 0.0 27 9-35 53-80 (229)
99 2jbm_A Nicotinate-nucleotide p 86.3 0.57 1.9E-05 30.1 2.9 22 14-35 73-94 (299)
100 2xha_A NUSG, transcription ant 86.3 0.81 2.8E-05 28.1 3.4 28 17-50 143-170 (193)
101 1brw_A PYNP, protein (pyrimidi 84.7 1 3.4E-05 30.6 3.6 27 11-37 375-401 (433)
102 2dsj_A Pyrimidine-nucleoside ( 84.4 1 3.5E-05 30.5 3.5 27 11-37 367-393 (423)
103 3tuf_B Stage II sporulation pr 84.4 0.7 2.4E-05 29.1 2.6 25 12-36 131-155 (245)
104 2hsi_A Putative peptidase M23; 83.8 0.8 2.8E-05 29.3 2.7 24 13-36 229-252 (282)
105 3lu0_D DNA-directed RNA polyme 83.6 1.2 4E-05 34.4 3.9 42 15-58 1002-1043(1407)
106 1uou_A Thymidine phosphorylase 83.1 1.3 4.6E-05 30.3 3.7 26 12-37 411-436 (474)
107 3h5q_A PYNP, pyrimidine-nucleo 83.0 1.1 3.7E-05 30.5 3.2 27 9-35 376-402 (436)
108 1qwy_A Peptidoglycan hydrolase 83.0 0.9 3.1E-05 29.4 2.7 24 13-36 236-259 (291)
109 3our_B EIIA, phosphotransferas 80.7 2.4 8.3E-05 25.8 3.9 25 27-54 62-86 (183)
110 3nyy_A Putative glycyl-glycine 80.5 1.2 4.1E-05 28.0 2.6 24 13-36 178-202 (252)
111 3ne5_B Cation efflux system pr 79.9 1.1 3.7E-05 29.5 2.3 27 9-35 214-240 (413)
112 2gu1_A Zinc peptidase; alpha/b 79.1 1.4 4.9E-05 28.7 2.7 24 13-36 281-304 (361)
113 2auk_A DNA-directed RNA polyme 78.7 1.7 5.8E-05 26.2 2.8 20 15-34 167-186 (190)
114 2qf7_A Pyruvate carboxylase pr 78.4 0.75 2.6E-05 34.5 1.3 26 9-34 1139-1164(1165)
115 3c2e_A Nicotinate-nucleotide p 78.1 1.4 4.6E-05 28.3 2.3 22 14-35 69-96 (294)
116 1vf7_A Multidrug resistance pr 77.4 1.3 4.5E-05 28.6 2.1 32 30-63 35-66 (369)
117 1yw4_A Succinylglutamate desuc 77.4 0.37 1.3E-05 31.3 -0.5 36 17-52 278-318 (341)
118 2tpt_A Thymidine phosphorylase 77.1 1 3.5E-05 30.6 1.6 27 11-37 380-406 (440)
119 2xhc_A Transcription antitermi 76.9 4.5 0.00015 26.7 4.6 36 10-51 171-211 (352)
120 4dk0_A Putative MACA; alpha-ha 76.4 0.83 2.8E-05 29.1 0.9 34 28-63 22-55 (369)
121 3fpp_A Macrolide-specific effl 76.1 5.8 0.0002 24.9 4.9 27 9-35 160-189 (341)
122 3csq_A Morphogenesis protein 1 75.7 0.95 3.3E-05 29.4 1.1 22 15-36 250-271 (334)
123 3bg3_A Pyruvate carboxylase, m 73.9 0.45 1.5E-05 34.1 -0.8 26 9-34 693-718 (718)
124 3vr4_A V-type sodium ATPase ca 65.8 18 0.00062 25.7 5.8 37 17-53 130-169 (600)
125 2lmc_B DNA-directed RNA polyme 62.5 0.96 3.3E-05 24.2 -0.9 16 16-31 67-82 (84)
126 3mfy_A V-type ATP synthase alp 57.4 37 0.0013 24.1 6.1 37 17-53 123-162 (588)
127 3gqb_A V-type ATP synthase alp 53.7 51 0.0017 23.3 6.3 37 17-53 122-160 (578)
128 1yw6_A Succinylglutamate desuc 53.2 6 0.0002 25.5 1.5 34 17-50 276-314 (335)
129 3ouv_A Serine/threonine protei 50.9 12 0.00042 18.3 2.2 23 9-31 43-65 (71)
130 2i14_A Nicotinate-nucleotide p 41.2 17 0.00058 24.2 2.3 24 10-35 76-99 (395)
131 2f7f_A Nicotinate phosphoribos 37.9 20 0.00068 24.6 2.3 21 15-35 99-119 (494)
132 3slu_A M23 peptidase domain pr 34.4 12 0.00041 24.7 0.7 19 18-36 299-317 (371)
133 3lu0_D DNA-directed RNA polyme 33.4 15 0.00053 28.6 1.3 36 16-51 1107-1164(1407)
134 2i1o_A Nicotinate phosphoribos 30.8 47 0.0016 22.0 3.2 23 11-35 75-103 (398)
135 1e2w_A Cytochrome F; electron 29.3 15 0.00052 23.2 0.6 16 16-31 214-229 (251)
136 2ftc_O L27MT, MRP-L27, mitocho 28.0 67 0.0023 16.4 4.0 43 8-50 15-67 (69)
137 2kue_A PKNB, serine/threonine- 27.6 39 0.0013 18.5 2.1 23 9-31 111-133 (138)
138 1ci3_M Protein (cytochrome F); 27.4 15 0.00052 23.2 0.3 16 16-31 213-228 (249)
139 2jxm_B Cytochrome F; copper, e 27.0 16 0.00054 23.1 0.3 17 15-31 212-228 (249)
140 1hcz_A Cytochrome F; electron 26.8 16 0.00055 23.2 0.3 17 15-31 212-228 (252)
141 1q90_A Apocytochrome F; membra 23.3 20 0.00069 23.1 0.3 16 16-31 214-229 (292)
142 3gqh_A Preneck appendage prote 22.8 92 0.0032 18.5 3.1 37 11-47 108-150 (163)
143 2exd_A NFED short homolog; mem 21.0 96 0.0033 15.8 3.4 29 15-43 39-67 (80)
144 2k5h_A Conserved protein; stru 20.9 1E+02 0.0035 16.4 2.9 29 15-43 65-93 (101)
No 1
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.79 E-value=1e-18 Score=95.72 Aligned_cols=59 Identities=59% Similarity=0.973 Sum_probs=57.6
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~ 59 (64)
+|.++.++.+|+|.+|++++||.|++||.|+++|++|+..+|+||++|+|.++++++|+
T Consensus 10 ~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~ 68 (87)
T 3crk_C 10 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGT 68 (87)
T ss_dssp CCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTC
T ss_pred CCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCC
Confidence 68999999999999999999999999999999999999999999999999999999997
No 2
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.78 E-value=9.3e-19 Score=97.23 Aligned_cols=62 Identities=27% Similarity=0.542 Sum_probs=59.0
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
+|.++.++.+|+|.+|++++||.|++||.|+.+|++|+..+|+||++|+|.++++++|+. |.
T Consensus 9 ~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~-V~ 70 (93)
T 1k8m_A 9 LSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AY 70 (93)
T ss_dssp CCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCE-EC
T ss_pred cCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCE-eC
Confidence 699999999999999999999999999999999999999999999999999999999984 54
No 3
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=97.51 Aligned_cols=60 Identities=67% Similarity=1.118 Sum_probs=58.2
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~ 60 (64)
||.++.++.+|+|.+|++++||.|++||.|+++|++|+..+|+||++|+|.++++++|+.
T Consensus 12 ~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~ 71 (98)
T 2dnc_A 12 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 71 (98)
T ss_dssp CCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCC
T ss_pred CCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCE
Confidence 699999999999999999999999999999999999999999999999999999999984
No 4
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.77 E-value=1.6e-18 Score=93.14 Aligned_cols=62 Identities=34% Similarity=0.650 Sum_probs=59.0
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
+|.++.++.+|+|.+|++++||.|++||.|+.+|++|+..+|+||++|+|.++++++|+. +.
T Consensus 6 ~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~ 67 (79)
T 1ghj_A 6 APTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT-VL 67 (79)
T ss_dssp CCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCE-EC
T ss_pred CCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCE-EC
Confidence 689999999999999999999999999999999999999999999999999999999984 54
No 5
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=97.43 Aligned_cols=59 Identities=58% Similarity=0.924 Sum_probs=57.6
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~ 59 (64)
||.++.++.+|+|.+|++++||.|++||.|++||++|+..+|+||++|+|.++++++|+
T Consensus 12 ~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~ 70 (108)
T 2dne_A 12 LPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGT 70 (108)
T ss_dssp CCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTC
T ss_pred cCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCC
Confidence 68999999999999999999999999999999999999999999999999999999997
No 6
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.75 E-value=8.8e-18 Score=98.35 Aligned_cols=59 Identities=61% Similarity=0.995 Sum_probs=57.6
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~ 59 (64)
||.++.++.+|+|.+|++++||.|++||.|+++|++|+..+|+||++|+|.++++++|+
T Consensus 32 ~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd 90 (128)
T 1y8o_B 32 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGT 90 (128)
T ss_dssp CCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTC
T ss_pred cCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCC
Confidence 68999999999999999999999999999999999999999999999999999999997
No 7
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.73 E-value=7.7e-18 Score=89.96 Aligned_cols=62 Identities=35% Similarity=0.550 Sum_probs=58.9
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
+|.++.+...|+|.+|++++||.|++||.|+.+|++|+...|+||++|+|.++++++|+. |.
T Consensus 6 ~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~ 67 (77)
T 2l5t_A 6 LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV-VP 67 (77)
T ss_dssp CCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCE-EC
T ss_pred CCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCE-EC
Confidence 689999999999999999999999999999999999999999999999999999999984 53
No 8
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.71 E-value=4e-17 Score=87.58 Aligned_cols=60 Identities=25% Similarity=0.345 Sum_probs=56.2
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
+|.++.+ +|+|.+|++++||.|++||.|+.+|++|+...|+||++|+|.++++++|+. |.
T Consensus 7 ~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~-V~ 66 (80)
T 1qjo_A 7 VPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VK 66 (80)
T ss_dssp CCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCE-EC
T ss_pred CCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCE-EC
Confidence 6888876 899999999999999999999999999999999999999999999999984 53
No 9
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.69 E-value=5.7e-19 Score=95.26 Aligned_cols=62 Identities=40% Similarity=0.670 Sum_probs=58.8
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
+|.++.++.+|+|.+|++++||.|++||.|+.+|++|+..+|+||++|+|.++++++|+. +.
T Consensus 7 ~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~ 68 (80)
T 1pmr_A 7 VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT-VT 68 (80)
T ss_dssp CCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCE-EC
T ss_pred cCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCE-EC
Confidence 699999999999999999999999999999999999999999999999999999999983 53
No 10
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.67 E-value=3.9e-17 Score=87.90 Aligned_cols=59 Identities=25% Similarity=0.388 Sum_probs=55.9
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~ 60 (64)
+|.++ +...|+|.+|++++||.|++||.|+.+|++|+..+|+||++|+|.++++++|+.
T Consensus 7 ~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~ 65 (81)
T 1gjx_A 7 VPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK 65 (81)
T ss_dssp CCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE
T ss_pred cCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCE
Confidence 68888 578899999999999999999999999999999999999999999999999983
No 11
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.67 E-value=2.5e-16 Score=84.49 Aligned_cols=59 Identities=20% Similarity=0.346 Sum_probs=54.8
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
+|.++.+ + +|.+|++++||.|++||.|+.+|++|+...|+||++|+|.++++++|+. |.
T Consensus 6 ~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~ 64 (79)
T 1iyu_A 6 VPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LK 64 (79)
T ss_dssp CCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCE-EE
T ss_pred CCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCE-EC
Confidence 6888875 7 9999999999999999999999999999999999999999999999984 53
No 12
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.66 E-value=5.6e-18 Score=106.93 Aligned_cols=63 Identities=63% Similarity=1.067 Sum_probs=0.0
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
||++++++.+|+|.+|++++||.|++||.|++||++|+..+|.||++|+|.++++++|+.+|.
T Consensus 8 mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~ 70 (229)
T 1zy8_K 8 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIR 70 (229)
T ss_dssp ---------------------------------------------------------------
T ss_pred cCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeec
Confidence 799999999999999999999999999999999999999999999999999999999984243
No 13
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=99.66 E-value=5.6e-18 Score=114.27 Aligned_cols=63 Identities=46% Similarity=0.790 Sum_probs=0.0
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64 (64)
Q Consensus 1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v 64 (64)
||++++++.+|+|.+|++++||.|++||.|++||+||+..+|.||++|+|.++++++|+ .|++
T Consensus 7 mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~-~V~~ 69 (428)
T 3dva_I 7 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT-VATV 69 (428)
T ss_dssp ----------------------------------------------------------------
T ss_pred cCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCC-EeCC
Confidence 79999999999999999999999999999999999999999999999999999999998 4653
No 14
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.56 E-value=3.3e-14 Score=74.49 Aligned_cols=52 Identities=19% Similarity=0.315 Sum_probs=49.7
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~ 60 (64)
..|+|.+|++++|+.|++||.|+.+++++....|+||++|+|.++++++|+.
T Consensus 6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~ 57 (72)
T 1z6h_A 6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDF 57 (72)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCE
T ss_pred ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCE
Confidence 4699999999999999999999999999999999999999999999999984
No 15
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=78.60 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=49.9
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
...|+|.+|++++|+.|++||.|+.+|++|+..+|+||++|+|.+++ .+|+. |.
T Consensus 11 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~-V~ 64 (84)
T 2kcc_A 11 PSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAV-LE 64 (84)
T ss_dssp SSSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCC-CC
T ss_pred CCCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCE-EC
Confidence 45699999999999999999999999999999999999999999999 99983 53
No 16
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=7.9e-14 Score=77.80 Aligned_cols=52 Identities=17% Similarity=0.397 Sum_probs=49.1
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~ 60 (64)
...|+|.+|++++||.|++||.|+.+|++|+...|+||++|+|. +++++|+.
T Consensus 23 ~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~ 74 (100)
T 2dn8_A 23 PSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAV 74 (100)
T ss_dssp SSCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCE
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCE
Confidence 35799999999999999999999999999999999999999999 99999983
No 17
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.49 E-value=2.9e-13 Score=70.96 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=49.8
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~ 60 (64)
...|+|.+|++++|+.|++||.|+.+++++....++||++|+|.++++++|+.
T Consensus 11 ~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~ 63 (74)
T 2d5d_A 11 PMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEA 63 (74)
T ss_dssp SSCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCE
T ss_pred CCCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCE
Confidence 34699999999999999999999999999999999999999999999999973
No 18
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.47 E-value=2.8e-13 Score=71.79 Aligned_cols=52 Identities=31% Similarity=0.464 Sum_probs=49.5
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~ 60 (64)
..|+|.+|++++|+.|++||.|+.+++++....|+||++|+|.++++.+|+.
T Consensus 15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~ 66 (77)
T 1dcz_A 15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA 66 (77)
T ss_dssp SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCB
T ss_pred CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCE
Confidence 4699999999999999999999999999999999999999999999999983
No 19
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.47 E-value=2e-15 Score=82.06 Aligned_cols=52 Identities=25% Similarity=0.302 Sum_probs=49.5
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
|+|.+|++++||.|++||.|+.+|++|+...|+||++|+|.++++++|+. |.
T Consensus 11 G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~-V~ 62 (85)
T 2k7v_A 11 VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VK 62 (85)
T ss_dssp CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCC-BC
T ss_pred EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCE-EC
Confidence 89999999999999999999999999999999999999999999999983 53
No 20
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.44 E-value=3.1e-13 Score=72.31 Aligned_cols=54 Identities=26% Similarity=0.418 Sum_probs=48.8
Q ss_pred CeEEEEE-------EEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 9 TEGTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 9 ~~g~i~~-------w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..|++.+ |++++|+.|++||.|+.+|++|+..+|+||++|+|.++++++|+. |.
T Consensus 11 ~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~ 71 (80)
T 1bdo_A 11 MVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VE 71 (80)
T ss_dssp SSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCE-EC
T ss_pred CCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCE-EC
Confidence 3577777 499999999999999999999999999999999999999999983 53
No 21
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.44 E-value=3.8e-13 Score=94.55 Aligned_cols=54 Identities=30% Similarity=0.397 Sum_probs=51.3
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..|+|.+|+|++||.|++||+|+++|+||+..+|+||.+|+|.++++++|+. |.
T Consensus 619 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~-v~ 672 (681)
T 3n6r_A 619 MPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNS-LA 672 (681)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCE-EC
T ss_pred CcEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCE-eC
Confidence 4699999999999999999999999999999999999999999999999984 64
No 22
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.43 E-value=4.3e-14 Score=78.27 Aligned_cols=52 Identities=29% Similarity=0.405 Sum_probs=26.1
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~ 60 (64)
..|+|.+|++++||.|++||.|+.+|++|+...|+||++|+|.++++.+|+.
T Consensus 32 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~ 83 (94)
T 2jku_A 32 MPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDT 83 (94)
T ss_dssp SSCEEEEECCCTTCCCCTTCCCEEEEC-------------------------
T ss_pred CCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCE
Confidence 4799999999999999999999999999999999999999999999999983
No 23
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.43 E-value=5.6e-13 Score=74.27 Aligned_cols=52 Identities=29% Similarity=0.400 Sum_probs=49.5
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~ 59 (64)
...|+|.+|++++|+.|++||.|+.++++|+...|+||++|+|.++++.+|+
T Consensus 20 ~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~ 71 (99)
T 2ejm_A 20 PMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGA 71 (99)
T ss_dssp SSSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTE
T ss_pred CCCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCC
Confidence 3479999999999999999999999999999999999999999999999987
No 24
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.38 E-value=1.2e-12 Score=96.70 Aligned_cols=54 Identities=26% Similarity=0.242 Sum_probs=51.3
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..|+|.+|+|++||.|++||+|++||+||+..+|+||.+|+|.++++++|+ .|.
T Consensus 1174 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~-~V~ 1227 (1236)
T 3va7_A 1174 YTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGD-MVE 1227 (1236)
T ss_dssp SCEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTC-EEC
T ss_pred CcEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcC-EeC
Confidence 469999999999999999999999999999999999999999999999999 465
No 25
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.35 E-value=2.4e-12 Score=94.65 Aligned_cols=54 Identities=15% Similarity=0.213 Sum_probs=51.2
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..|+|.+|+|++||.|++||+|+++|+||+..+|+||.+|+|.++++++|+. |.
T Consensus 1084 ~~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~-V~ 1137 (1150)
T 3hbl_A 1084 MPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDT-IA 1137 (1150)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCE-EC
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eC
Confidence 4699999999999999999999999999999999999999999999999984 64
No 26
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.29 E-value=2.6e-13 Score=95.31 Aligned_cols=54 Identities=22% Similarity=0.366 Sum_probs=0.0
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..|+|.+|+|++||.|++||+|++||+||+..+|+||.+|+|.++++++|+. |.
T Consensus 609 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~-v~ 662 (675)
T 3u9t_A 609 MNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGEL-VE 662 (675)
T ss_dssp -------------------------------------------------------
T ss_pred CCEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCC-cC
Confidence 4699999999999999999999999999999999999999999999999984 64
No 27
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=99.24 E-value=2.6e-11 Score=71.45 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=42.3
Q ss_pred EEEEEEEc-CCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEE---ecCCCC
Q psy10440 11 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKI---LVPENT 59 (64)
Q Consensus 11 g~i~~w~v-~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~---~~~~g~ 59 (64)
|.|..+.+ +.|+.|++||.|+.||++|+..+|+||++|+|+++ ++..++
T Consensus 45 G~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~ 97 (136)
T 1zko_A 45 GDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPE 97 (136)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTT
T ss_pred CCcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCcc
Confidence 44555555 99999999999999999999999999999999999 555555
No 28
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=99.17 E-value=2e-11 Score=71.57 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=42.6
Q ss_pred EEEEEEEc-CCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCC
Q psy10440 11 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN 58 (64)
Q Consensus 11 g~i~~w~v-~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g 58 (64)
|.|..+.+ +.|+.|++||.|+.||++|+..+|+||++|+|++++...+
T Consensus 36 G~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~ 84 (131)
T 1hpc_A 36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLT 84 (131)
T ss_dssp CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHH
T ss_pred CCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhh
Confidence 45666666 9999999999999999999999999999999999986544
No 29
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=99.17 E-value=6.2e-11 Score=69.17 Aligned_cols=49 Identities=18% Similarity=0.138 Sum_probs=42.7
Q ss_pred EEEEEEEc-CCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440 11 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59 (64)
Q Consensus 11 g~i~~w~v-~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~ 59 (64)
|.|..+.+ +.|+.|++||.+++||++|+..+|+||++|+|++++...++
T Consensus 37 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~ 86 (128)
T 3a7l_A 37 GDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSD 86 (128)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred CceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhcc
Confidence 44555555 99999999999999999999999999999999999876544
No 30
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=99.14 E-value=1.4e-10 Score=67.69 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=40.7
Q ss_pred EEEEEEEc-CCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecC
Q psy10440 11 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 56 (64)
Q Consensus 11 g~i~~w~v-~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~ 56 (64)
|.|..+.+ +.|++|++||.+++||++|+..+|+||++|+|++++..
T Consensus 36 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~ 82 (128)
T 1onl_A 36 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLA 82 (128)
T ss_dssp CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTH
T ss_pred CCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhh
Confidence 44555555 99999999999999999999999999999999999764
No 31
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=99.13 E-value=1.5e-11 Score=87.32 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=50.6
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
.+|+|.+|++++||.|++||.|+++|+||+...|+||.+|+|.++++++|+. |.
T Consensus 656 ~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~-V~ 709 (718)
T 3bg3_A 656 MPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMT-LE 709 (718)
T ss_dssp SCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEE-EC
T ss_pred CCeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCE-eC
Confidence 4799999999999999999999999999999999999999999999999983 53
No 32
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=99.12 E-value=9.7e-11 Score=66.16 Aligned_cols=52 Identities=31% Similarity=0.399 Sum_probs=46.7
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceE-----------------------------EEEecCCCeEEEEEecCCCC
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAV-----------------------------MSFETEEEGILAKILVPENT 59 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~-----------------------------~~i~ap~~G~i~~~~~~~g~ 59 (64)
..|+|.+|++++|+.|++||+|+.+++.++. ..|+||++|+|..+.+.+|+
T Consensus 8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~ 87 (116)
T 2k32_A 8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD 87 (116)
T ss_dssp SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence 4699999999999999999999999987443 48999999999999999997
Q ss_pred c
Q psy10440 60 T 60 (64)
Q Consensus 60 ~ 60 (64)
.
T Consensus 88 ~ 88 (116)
T 2k32_A 88 Y 88 (116)
T ss_dssp E
T ss_pred E
Confidence 3
No 33
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.12 E-value=3.9e-11 Score=88.34 Aligned_cols=54 Identities=30% Similarity=0.458 Sum_probs=45.1
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..|+|.+|++++||.|++||.|+.+|+||+..+|+||.+|+|.++++++|+. |.
T Consensus 1102 ~~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~-V~ 1155 (1165)
T 2qf7_A 1102 MPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQ-ID 1155 (1165)
T ss_dssp SCEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCE-EC
T ss_pred CCeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCE-EC
Confidence 4699999999999999999999999999999999999999999999999984 54
No 34
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=98.98 E-value=1.6e-09 Score=63.02 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=41.7
Q ss_pred EEEEEEEc-CCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440 11 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59 (64)
Q Consensus 11 g~i~~w~v-~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~ 59 (64)
|.|+.+.. +.|+.|++|+.++.||++|+..+|+||++|+|++++..-.+
T Consensus 32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~ 81 (125)
T 3klr_A 32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAE 81 (125)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTT
T ss_pred CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhh
Confidence 44555544 79999999999999999999999999999999999765443
No 35
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=98.91 E-value=3.7e-09 Score=62.74 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=40.5
Q ss_pred EEEEEEE-cCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCC
Q psy10440 11 GTIVKWL-KKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN 58 (64)
Q Consensus 11 g~i~~w~-v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g 58 (64)
|.|+-+. .+.|+.|++|+.++.||++|+..+|+||++|+|++++..-.
T Consensus 54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~ 102 (143)
T 3mxu_A 54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALA 102 (143)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGG
T ss_pred CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhh
Confidence 3444443 38999999999999999999999999999999999976543
No 36
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=98.87 E-value=4.3e-09 Score=62.10 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=38.8
Q ss_pred EEEEEEE-cCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEec
Q psy10440 11 GTIVKWL-KKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55 (64)
Q Consensus 11 g~i~~w~-v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~ 55 (64)
|.|+-+. .+.|++|++|+.++.||++|+..+|+||++|+|++++.
T Consensus 49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~ 94 (137)
T 3tzu_A 49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNT 94 (137)
T ss_dssp CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECH
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehh
Confidence 3444443 38999999999999999999999999999999999864
No 37
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=98.81 E-value=1.1e-08 Score=61.44 Aligned_cols=44 Identities=23% Similarity=0.331 Sum_probs=38.1
Q ss_pred EEEEE-EcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEec
Q psy10440 12 TIVKW-LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55 (64)
Q Consensus 12 ~i~~w-~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~ 55 (64)
.|+-+ +.+.|+.|++|+.++.||+.|+..+|+||++|+|++++-
T Consensus 60 dIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~ 104 (155)
T 3hgb_A 60 DVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS 104 (155)
T ss_dssp SEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred CeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence 34433 347999999999999999999999999999999999864
No 38
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=98.52 E-value=1.6e-07 Score=60.33 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=25.9
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
..|+|.++++++|+.|++||+|+.+++.
T Consensus 38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 38 VSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence 4699999999999999999999999873
No 39
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=98.52 E-value=2.7e-07 Score=59.65 Aligned_cols=28 Identities=43% Similarity=0.588 Sum_probs=26.0
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
..|+|.++++++|+.|++||+|+.+++.
T Consensus 64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 91 (359)
T 3lnn_A 64 LAGRIVSLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp SCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred CCEEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 4699999999999999999999999874
No 40
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=98.49 E-value=5.3e-07 Score=59.97 Aligned_cols=52 Identities=17% Similarity=0.301 Sum_probs=45.5
Q ss_pred CeEEEEEEEc-CCCCEEcCCCeEEEEecC------------------------------------------------ceE
Q psy10440 9 TEGTIVKWLK-KEGDAVAPGDVLCEIQTD------------------------------------------------KAV 39 (64)
Q Consensus 9 ~~g~i~~w~v-~~G~~V~~g~~l~~ie~~------------------------------------------------k~~ 39 (64)
..|.|.++++ ++||.|++||+|+.+++. ...
T Consensus 128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~ 207 (413)
T 3ne5_B 128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR 207 (413)
T ss_dssp SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence 4699999998 999999999999999851 125
Q ss_pred EEEecCCCeEEEEEecCCCCc
Q psy10440 40 MSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 40 ~~i~ap~~G~i~~~~~~~g~~ 60 (64)
..|+||++|+|.++.+.+|+.
T Consensus 208 ~~I~AP~~G~V~~~~v~~G~~ 228 (413)
T 3ne5_B 208 FTLKAPIDGVITAFDLRAGMN 228 (413)
T ss_dssp EEEECSSSEEEEECCCCTTCE
T ss_pred EEEEcCCCeEEEEEEcCCCCE
Confidence 689999999999999999983
No 41
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=98.42 E-value=7e-08 Score=60.55 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=25.5
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|+|.++++++|+.|++||+|+.+++
T Consensus 29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~ 55 (277)
T 2f1m_A 29 VSGIILKRNFKEGSDIEAGVSLYQIDP 55 (277)
T ss_dssp SCEEEEEECSCTTCEECTTSCSEEECC
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEECc
Confidence 469999999999999999999999986
No 42
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=98.28 E-value=2.7e-07 Score=60.33 Aligned_cols=52 Identities=27% Similarity=0.357 Sum_probs=45.1
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCc---------------------------------------------------
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK--------------------------------------------------- 37 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k--------------------------------------------------- 37 (64)
..|+|.++++++|+.|++||+|+.|++..
T Consensus 50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~ 129 (369)
T 1vf7_A 50 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE 129 (369)
T ss_dssp SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999998631
Q ss_pred ------eEEEEecCCCeEEEEEecCCCCc
Q psy10440 38 ------AVMSFETEEEGILAKILVPENTT 60 (64)
Q Consensus 38 ------~~~~i~ap~~G~i~~~~~~~g~~ 60 (64)
....|+||++|+|..+.+.+|+.
T Consensus 130 ~a~~~l~~~~I~AP~~G~V~~~~v~~G~~ 158 (369)
T 1vf7_A 130 QARINLRYTKVLSPISGRIGRSAVTEGAL 158 (369)
T ss_dssp HHHHHHHTTEEECSSSEEECCCSSCBTCE
T ss_pred HHHHhhcCCEEECCCCeEEEEEEcCCCCe
Confidence 12489999999999999999873
No 43
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=97.90 E-value=2.7e-07 Score=59.72 Aligned_cols=28 Identities=39% Similarity=0.589 Sum_probs=25.6
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
..|+|.++++++|+.|++||+|+.+++.
T Consensus 39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 39 VSGKITKLYVKLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp SCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred CCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence 4699999999999999999999999863
No 44
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=97.75 E-value=0.00013 Score=47.80 Aligned_cols=48 Identities=19% Similarity=0.166 Sum_probs=41.1
Q ss_pred EEEEEEcCCCCEEcCCCeEEEEec----CceEEEEecCCCeEEEEEe----cCCCC
Q psy10440 12 TIVKWLKKEGDAVAPGDVLCEIQT----DKAVMSFETEEEGILAKIL----VPENT 59 (64)
Q Consensus 12 ~i~~w~v~~G~~V~~g~~l~~ie~----~k~~~~i~ap~~G~i~~~~----~~~g~ 59 (64)
-+.+..++.|+.|++||.|+.+.+ .+...+|+||.+|+|.... +.+|+
T Consensus 276 G~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~~~~~V~~Gd 331 (354)
T 3cdx_A 276 GLFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGAGPGRVTRGD 331 (354)
T ss_dssp EEEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEECSSEECTTC
T ss_pred EEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEeCCCccCCCC
Confidence 378888999999999999999997 4677899999999998874 45665
No 45
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=97.64 E-value=0.00022 Score=46.50 Aligned_cols=49 Identities=14% Similarity=0.352 Sum_probs=40.7
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEecC----ceEEEEecCCCeEEEEEe----cCCCC
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQTD----KAVMSFETEEEGILAKIL----VPENT 59 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~~----k~~~~i~ap~~G~i~~~~----~~~g~ 59 (64)
+-+.+..++.|+.|++||.|+.|.+. ....+|+||.+|.|.... +.+|+
T Consensus 265 ~Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~~~~V~~G~ 321 (331)
T 3na6_A 265 DGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHFPGMIKSGD 321 (331)
T ss_dssp CEEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEECSSEECTTC
T ss_pred CeEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeCCCccCCCC
Confidence 34677789999999999999999873 457899999999998875 45555
No 46
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=97.55 E-value=0.00023 Score=47.14 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=41.2
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEec------CceEEEEecCCCeEEEEEe----cCCCC
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQT------DKAVMSFETEEEGILAKIL----VPENT 59 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~------~k~~~~i~ap~~G~i~~~~----~~~g~ 59 (64)
+-+....++.|+.|++||.|+.|-. .....+++||.+|+|...+ +.+|+
T Consensus 298 ~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~~p~V~~G~ 356 (368)
T 3fmc_A 298 AGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFASASVHQGT 356 (368)
T ss_dssp CEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECSSSEECTTC
T ss_pred CEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeCCCccCCCC
Confidence 4567789999999999999999988 4577899999999998874 44554
No 47
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=97.19 E-value=0.0018 Score=41.89 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=40.3
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEec----CceEEEEecCCCeEEEEE----ecCCCC
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQT----DKAVMSFETEEEGILAKI----LVPENT 59 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~----~k~~~~i~ap~~G~i~~~----~~~~g~ 59 (64)
+.+....++.|+.|++||.|+.+-. .....+|+||.+|.|... .+.+|+
T Consensus 265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~~~p~V~~Gd 321 (332)
T 2qj8_A 265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIRSAMYVQGNE 321 (332)
T ss_dssp SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEECSEEECTTC
T ss_pred CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEeCCCeeCCCC
Confidence 3455678899999999999999965 456789999999999887 467776
No 48
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=97.16 E-value=0.00097 Score=40.33 Aligned_cols=49 Identities=18% Similarity=0.120 Sum_probs=40.4
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEecCceEE-EEecCCCeEEEEEecCCC
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVM-SFETEEEGILAKILVPEN 58 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~-~i~ap~~G~i~~~~~~~g 58 (64)
+|.-+-..+.+|+.|.+|+.++-+.|.|... .++||.+|+|.-+.--++
T Consensus 108 eG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p~ 157 (169)
T 3d4r_A 108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIPS 157 (169)
T ss_dssp CSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEETT
T ss_pred CceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecCC
Confidence 3555667889999999999999999999855 699999999987664433
No 49
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=96.81 E-value=0.0024 Score=32.94 Aligned_cols=27 Identities=44% Similarity=0.646 Sum_probs=24.7
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|+|.++++++|+.|..|++|+.+++
T Consensus 51 ~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 51 VRGKIVKILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp CCEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred CCEEEEEEEeCCcCEECCCCEEEEEEC
Confidence 469999999999999999999999864
No 50
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=96.71 E-value=0.0027 Score=33.03 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.9
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
..|+|.++++++|+.|..|+.|+.|+
T Consensus 55 ~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 55 KSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp SCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 46999999999999999999999875
No 51
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=96.59 E-value=0.0034 Score=31.76 Aligned_cols=28 Identities=43% Similarity=0.599 Sum_probs=25.3
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
..|.|.++++++|+.|..|+.|+.+...
T Consensus 43 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 70 (72)
T 1z6h_A 43 RSGIVKEVKKKEGDFVNEGDVLLELSNS 70 (72)
T ss_dssp SCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred CCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence 4699999999999999999999998754
No 52
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=96.53 E-value=0.0043 Score=32.16 Aligned_cols=27 Identities=33% Similarity=0.671 Sum_probs=24.8
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|+|.++++++|+.+..|++|+.++.
T Consensus 51 ~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 51 ADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp SCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 469999999999999999999999875
No 53
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=96.44 E-value=0.0084 Score=32.34 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=25.6
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
..|+|.++++++|+.|..|++|+.++..
T Consensus 54 ~~G~V~~i~v~~G~~V~~G~~l~~i~~~ 81 (93)
T 1k8m_A 54 YDGVIKKLYYNLDDIAYVGKPLVDIETE 81 (93)
T ss_dssp SCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecC
Confidence 4699999999999999999999999754
No 54
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=96.43 E-value=0.0028 Score=32.88 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=25.5
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
..|+|.++++++|+.|..|++|+.|+..
T Consensus 50 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 50 FAGVVKELKVNVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp SCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred CCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence 4699999999999999999999999864
No 55
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=96.22 E-value=0.0092 Score=31.60 Aligned_cols=28 Identities=39% Similarity=0.548 Sum_probs=25.4
Q ss_pred CeEEEEEEEcCCCC-EEcCCCeEEEEecC
Q psy10440 9 TEGTIVKWLKKEGD-AVAPGDVLCEIQTD 36 (64)
Q Consensus 9 ~~g~i~~w~v~~G~-~V~~g~~l~~ie~~ 36 (64)
..|+|.+++++.|+ .|..|+.|+.++..
T Consensus 55 ~~G~v~~~~v~~G~~~V~~G~~l~~i~~~ 83 (87)
T 3crk_C 55 EEGYLAKILVPEGTRDVPLGTPLCIIVEK 83 (87)
T ss_dssp SCEEEEEESSCTTCCCEETTCEEEEEESS
T ss_pred cCcEEEEEEECCCCeEECCCCEEEEEEcc
Confidence 46999999999999 89999999999864
No 56
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=96.20 E-value=0.0055 Score=31.76 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=25.3
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
..|+|.++++++|+.|..|++|+.++..
T Consensus 48 ~~G~v~~~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 48 KAGVVKSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp SSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 4699999999999999999999998764
No 57
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=96.09 E-value=0.01 Score=29.96 Aligned_cols=26 Identities=38% Similarity=0.634 Sum_probs=23.8
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
..|.|.+++++.|+.+..|+.|+.++
T Consensus 49 ~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 49 RDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 46999999999999999999999875
No 58
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=96.06 E-value=0.016 Score=35.31 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=35.6
Q ss_pred EEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~ 59 (64)
..+++++|+.|++||.||+.+ .-+.+|.|.++|+|.=-...+|.
T Consensus 62 a~L~V~dG~~V~~G~~laewD--p~t~pIisE~~G~V~f~dii~G~ 105 (190)
T 2auk_A 62 AVLAKGDGEQVAGGETVANWD--PHTMPVITEVSGFVRFTDMIDGQ 105 (190)
T ss_dssp CEESSCTTCEECTTCEEEECC--SSEEEEECSSCEEEEEESCCBTT
T ss_pred CEEEecCCCEEcCCCEEEEEc--CcCCcEEeccccEEEEEeccCCc
Confidence 367899999999999999774 67899999999999554455443
No 59
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=95.83 E-value=0.0076 Score=30.84 Aligned_cols=26 Identities=46% Similarity=0.537 Sum_probs=23.9
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
..|.|.++++++|+.+..|+.|+.||
T Consensus 52 ~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 52 TDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCEEEEEEecCCcCEECCCCEEEEEC
Confidence 46999999999999999999999875
No 60
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=95.61 E-value=0.017 Score=35.56 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=28.8
Q ss_pred EEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEE
Q psy10440 15 KWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKI 53 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~ 53 (64)
.+++++|+.|++||.||+-. +|.|.++|++...
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~ 54 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDV 54 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEEE
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEEEee
Confidence 57899999999999999866 8999999998543
No 61
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.51 E-value=0.015 Score=31.61 Aligned_cols=27 Identities=22% Similarity=0.572 Sum_probs=24.2
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
..|.|. +++++|+.|..|+.|+.++..
T Consensus 61 ~~G~V~-~~v~~G~~V~~G~~l~~i~~~ 87 (100)
T 2dn8_A 61 ERGRVK-YIKRPGAVLEAGCVVARLELD 87 (100)
T ss_dssp SSEEEE-ECSCTTCEECSSCEEEEECCS
T ss_pred CCEEEE-EEeCCCCEECCCCEEEEEEcC
Confidence 469999 999999999999999999754
No 62
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=95.42 E-value=0.022 Score=32.73 Aligned_cols=29 Identities=38% Similarity=0.543 Sum_probs=26.0
Q ss_pred CeEEEEEEEcCCCC-EEcCCCeEEEEecCc
Q psy10440 9 TEGTIVKWLKKEGD-AVAPGDVLCEIQTDK 37 (64)
Q Consensus 9 ~~g~i~~w~v~~G~-~V~~g~~l~~ie~~k 37 (64)
..|+|.++++++|+ .|..|+.|+.|+...
T Consensus 77 ~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~ 106 (128)
T 1y8o_B 77 EEGYLAKILVPEGTRDVPLGTPLCIIVEKE 106 (128)
T ss_dssp SCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred CCeEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 46999999999998 899999999998653
No 63
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=95.37 E-value=0.0059 Score=32.19 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=25.4
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
..|+|.++++++|+.|..|++|+.|+..
T Consensus 46 ~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 46 FAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp SCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 4589999999999999999999999864
No 64
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.20 E-value=0.014 Score=31.80 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=26.0
Q ss_pred CeEEEEEEEcCCCCEE-cCCCeEEEEecCc
Q psy10440 9 TEGTIVKWLKKEGDAV-APGDVLCEIQTDK 37 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V-~~g~~l~~ie~~k 37 (64)
..|+|.++++++|+.| ..|++|+.|+...
T Consensus 57 ~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~~ 86 (98)
T 2dnc_A 57 DDGILAKIVVEEGSKNIRLGSLIGLIVEEG 86 (98)
T ss_dssp SCEEEEECSSCTTCCCEESSCEEEEEECTT
T ss_pred CCEEEEEEEeCCCCEEcCCCCEEEEEecCC
Confidence 4699999999999998 9999999998653
No 65
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=95.20 E-value=0.017 Score=32.08 Aligned_cols=28 Identities=29% Similarity=0.416 Sum_probs=25.5
Q ss_pred CeEEEEEEEcCCCC-EEcCCCeEEEEecC
Q psy10440 9 TEGTIVKWLKKEGD-AVAPGDVLCEIQTD 36 (64)
Q Consensus 9 ~~g~i~~w~v~~G~-~V~~g~~l~~ie~~ 36 (64)
..|+|.++++++|+ .|..|+.|+.|+..
T Consensus 57 ~~G~V~~i~v~~G~~~V~~G~~l~~i~~~ 85 (108)
T 2dne_A 57 EECYMAKILVAEGTRDVPIGAIICITVGK 85 (108)
T ss_dssp SSEEEEECSSCTTCCSEETTCEEEEEESC
T ss_pred CCEEEEEEEeCCCCeeecCCCEEEEEecC
Confidence 46999999999999 89999999999864
No 66
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=94.97 E-value=0.017 Score=34.52 Aligned_cols=41 Identities=27% Similarity=0.295 Sum_probs=33.2
Q ss_pred CeEEEEEEEcCCCCEEcC----CCeEEEEecCceEEEEecCCCeEEEEE
Q psy10440 9 TEGTIVKWLKKEGDAVAP----GDVLCEIQTDKAVMSFETEEEGILAKI 53 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~----g~~l~~ie~~k~~~~i~ap~~G~i~~~ 53 (64)
..|++..+. +..|.+-. |+.++...++ ..++||++|+|..+
T Consensus 19 ~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v 63 (161)
T 1f3z_A 19 LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKI 63 (161)
T ss_dssp SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEE
T ss_pred CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEE
Confidence 468888876 67777666 8999987775 47899999999887
No 67
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=94.49 E-value=0.0066 Score=32.76 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=0.0
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
..|.|.++++++|+.|..|+.|+.||
T Consensus 69 ~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 69 KTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp --------------------------
T ss_pred CCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 46999999999999999999999875
No 68
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=94.48 E-value=0.0045 Score=32.26 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=24.3
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|+|.++++++|+.+..|+.|+.++.
T Consensus 52 ~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 52 ADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp SBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 469999999999999999999998764
No 69
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=94.43 E-value=0.051 Score=35.98 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=29.6
Q ss_pred EEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEE
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKI 53 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~ 53 (64)
..+++++|+.|++||.||+-. +|.|..+|+|...
T Consensus 61 a~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~ 94 (352)
T 2xhc_A 61 AKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDV 94 (352)
T ss_dssp CEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEE
T ss_pred CEEEecCCCEEcCCCEEEEec------cEEEecceEEEee
Confidence 367899999999999999977 8999999999544
No 70
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=94.28 E-value=0.024 Score=29.85 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=24.8
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK 37 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k 37 (64)
..|+|.+++ +.|+.|..|+.|+.|+...
T Consensus 49 ~~G~v~~~~-~~G~~V~~G~~l~~i~~~~ 76 (84)
T 2kcc_A 49 ERGRVKYIK-RPGAVLEAGCVVARLELDD 76 (84)
T ss_dssp SSEEEEECS-CTTCCCCTTCCCEEEECSC
T ss_pred CCEEEEEEc-CCCCEECCCCEEEEEeCCC
Confidence 469999999 9999999999999997643
No 71
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=93.98 E-value=0.025 Score=33.77 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=33.3
Q ss_pred CCeEEEEEEEcCCCCEEcC----CCeEEEEecCceEEEEecCCCeEEEEE
Q psy10440 8 MTEGTIVKWLKKEGDAVAP----GDVLCEIQTDKAVMSFETEEEGILAKI 53 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~----g~~l~~ie~~k~~~~i~ap~~G~i~~~ 53 (64)
-..|++..+ .+..|.+.. |+.++...+. ..++||++|+|..+
T Consensus 18 P~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v 63 (162)
T 1ax3_A 18 PITGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNV 63 (162)
T ss_dssp CCSEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEEC
T ss_pred cCceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEE
Confidence 346999986 677887766 8999987763 47899999999876
No 72
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=93.68 E-value=0.062 Score=29.02 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=25.7
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK 37 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k 37 (64)
..|.|.+++++.|+.|..|+.|+.|....
T Consensus 58 ~~G~V~~~~v~~G~~V~~G~~L~~i~~~~ 86 (99)
T 2ejm_A 58 KDGTVKKVFYREGAQANRHTPLVEFEEEE 86 (99)
T ss_dssp SCEEEEEESCCTTEEECTTCBCEEECCCC
T ss_pred CCeEEEEEEcCCCCEECCCCEEEEEECCC
Confidence 46999999999999999999999997643
No 73
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=93.60 E-value=0.093 Score=37.09 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=24.3
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
..|+|.++++++|+.|..|++|+.||
T Consensus 656 ~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 656 KKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 46999999999999999999999986
No 74
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=92.93 E-value=0.011 Score=30.68 Aligned_cols=28 Identities=18% Similarity=0.432 Sum_probs=24.7
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
..|+|.++++++|+.+..|+.|+.++..
T Consensus 51 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 51 VAGVVKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp CSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred CCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence 3589999999999999999999998753
No 75
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=92.87 E-value=0.088 Score=28.81 Aligned_cols=22 Identities=9% Similarity=0.215 Sum_probs=19.7
Q ss_pred EEEecCCCeEEEEEecCCCCccc
Q psy10440 40 MSFETEEEGILAKILVPENTTDG 62 (64)
Q Consensus 40 ~~i~ap~~G~i~~~~~~~g~~~v 62 (64)
..|.|+.+|+|.++++++|+. |
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~~-V 23 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGDK-V 23 (116)
T ss_dssp EEECCSSCEEEEEECSCTTSE-E
T ss_pred eEEeCcCCEEEEEEECCCcCE-E
Confidence 578999999999999999984 5
No 76
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=92.16 E-value=0.3 Score=30.11 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=26.9
Q ss_pred CeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 28 DVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 28 ~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..-+.++.. ....|.|+.+|+|.++++++|+. |.
T Consensus 12 ~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~-V~ 45 (277)
T 2f1m_A 12 ELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSD-IE 45 (277)
T ss_dssp EEEEEEECS-EEEEECCSSCEEEEEECSCTTCE-EC
T ss_pred EEEEEEEee-eEEEEEccccEEEEEEEcCCCCE-ec
Confidence 344567765 46789999999999999999984 53
No 77
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=91.80 E-value=0.1 Score=34.12 Aligned_cols=39 Identities=8% Similarity=-0.001 Sum_probs=31.0
Q ss_pred EcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEE---ecCCCC
Q psy10440 17 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKI---LVPENT 59 (64)
Q Consensus 17 ~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~---~~~~g~ 59 (64)
.++.|+.|++||+|+.+-. .+++||.+|.+.-. .+.+|+
T Consensus 280 ~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~~p~p~V~~G~ 321 (350)
T 2bco_A 280 NVENFTSFVHGEVFGHDGD----KPLMAKNDNEAIVFPNRHVAIGQ 321 (350)
T ss_dssp TCCBTEECCTTCEEEEETT----EEEECSSSSCEEESCCTTCCTTS
T ss_pred cccCCCEeCCCCEEEEECC----EEEEeCCCCEEEEecCCCCCCCc
Confidence 3688999999999999854 78899999987665 345555
No 78
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=91.72 E-value=0.16 Score=31.04 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.9
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
|+-.++++++||+|++||.|+++.-
T Consensus 115 G~gF~~~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 115 GEGFTRIAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp TTTEEECSCTTCEECTTCEEEEECH
T ss_pred CccceEEEeCcCEEcCCCEEEEECH
Confidence 4557889999999999999999964
No 79
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=91.51 E-value=0.2 Score=29.61 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.4
Q ss_pred EEEEcCCCCEEcCCCeEEEEec
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.+.++++||+|++||.|+++..
T Consensus 91 F~~~V~~Gd~V~~G~~L~~~d~ 112 (154)
T 2gpr_A 91 FESFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp EEECCCTTCEECTTCEEEEECH
T ss_pred eEEEEcCCCEEcCCCEEEEECH
Confidence 4579999999999999999974
No 80
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=91.06 E-value=0.25 Score=36.97 Aligned_cols=27 Identities=37% Similarity=0.617 Sum_probs=24.6
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|+|.++++++|+.|..||+|+.|+.
T Consensus 1121 ~~G~v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A 1121 FDGVIKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp SSEEEEEECCCTTCEECTTBEEEEEC-
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence 469999999999999999999999975
No 81
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=90.83 E-value=0.077 Score=31.39 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=32.7
Q ss_pred CeEEEEEEEcCCCCEEcC----CCeEEEEecCceEEEEecCCCeEEEEE
Q psy10440 9 TEGTIVKWLKKEGDAVAP----GDVLCEIQTDKAVMSFETEEEGILAKI 53 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~----g~~l~~ie~~k~~~~i~ap~~G~i~~~ 53 (64)
..|++..+. +..|.+-. |+.++...++ ..++||++|+|..+
T Consensus 14 ~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v 58 (154)
T 2gpr_A 14 CDGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTA 58 (154)
T ss_dssp SSEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEEC
T ss_pred CCeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEE
Confidence 458888865 77777766 8999988775 48999999999874
No 82
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=90.82 E-value=0.044 Score=36.92 Aligned_cols=28 Identities=21% Similarity=0.442 Sum_probs=0.0
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
..|+|.++++++|+.|..|++|+.|+..
T Consensus 52 ~~G~v~~i~v~~G~~V~~G~~l~~i~~~ 79 (428)
T 3dva_I 52 VKGKVLEILVPEGTVATVGQTLITLDAP 79 (428)
T ss_dssp ----------------------------
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 4699999999999999999999999754
No 83
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=90.68 E-value=0.26 Score=29.30 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.0
Q ss_pred EEEEcCCCCEEcCCCeEEEEec
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.+.++++||+|++||.|+++..
T Consensus 96 F~~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 96 FKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp EEECSCTTCEECTTCEEEEECH
T ss_pred cEEEEeCcCEECCCCEEEEECH
Confidence 3448999999999999999974
No 84
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=90.44 E-value=0.35 Score=31.04 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.0
Q ss_pred EEEEEcCCCCEEcCCCeEEEEec
Q psy10440 13 IVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
=.+|++++|+.+++|+++++++.
T Consensus 72 ~v~~~~~dG~~v~~g~~v~~i~G 94 (284)
T 1qpo_A 72 RVLDRVEDGARVPPGEALMTLEA 94 (284)
T ss_dssp EEEEECCTTCEECTTCEEEEEEE
T ss_pred EEEEEcCCCCEecCCcEEEEEEE
Confidence 37899999999999999999985
No 85
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=90.37 E-value=0.37 Score=36.41 Aligned_cols=25 Identities=40% Similarity=0.679 Sum_probs=23.5
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEE
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEI 33 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~i 33 (64)
..|+|.++++++|+.|..||+|+.|
T Consensus 1211 ~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1211 KSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEE
T ss_pred CCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 4699999999999999999999986
No 86
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=89.82 E-value=0.33 Score=31.16 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.6
Q ss_pred EEEEcCCCCEEcCCCeEEEEec
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.+|++++|+.+++|+++++++.
T Consensus 74 v~~~~~dG~~v~~g~~v~~i~G 95 (286)
T 1x1o_A 74 FTPLVAEGARVAEGTEVARVRG 95 (286)
T ss_dssp EEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCCccCCCEEEEEEE
Confidence 6799999999999999999985
No 87
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=89.58 E-value=0.065 Score=37.83 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=0.0
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
..|+|.++++++|+.|..|++|+.|+..
T Consensus 646 ~~G~v~~i~~~~G~~v~~g~~l~~i~~~ 673 (675)
T 3u9t_A 646 HAGVVKALYCSEGELVEEGTPLVELDEN 673 (675)
T ss_dssp ----------------------------
T ss_pred CCeEEEEEEeCCcCCcCCCCEEEEEecC
Confidence 4699999999999999999999999854
No 88
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=89.54 E-value=0.46 Score=30.10 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=20.4
Q ss_pred EEEEcCCCCEEcCCCeEEEEec
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.+|.+++|+.|.+|++|++++.
T Consensus 60 v~~~~~eG~~v~~g~~~~~v~G 81 (273)
T 2b7n_A 60 CVQTIKDKERFKPKDALMEIRG 81 (273)
T ss_dssp EEEECCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEEe
Confidence 5799999999999999999986
No 89
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=89.49 E-value=0.37 Score=31.16 Aligned_cols=22 Identities=18% Similarity=0.516 Sum_probs=20.5
Q ss_pred EEEEcCCCCEEcCCCeEEEEec
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.+|++++|+.+++|++|++++.
T Consensus 77 v~~~~~dG~~v~~g~~v~~i~G 98 (287)
T 3tqv_A 77 ITWLYSDAQKVPANARIFELKG 98 (287)
T ss_dssp EEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEEE
Confidence 5899999999999999999985
No 90
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=89.43 E-value=0.42 Score=30.46 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=27.0
Q ss_pred eEEEEecC-ceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 29 VLCEIQTD-KAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 29 ~l~~ie~~-k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
.-+.++.. .....|.|+.+|+|.++++++|++ |.
T Consensus 46 ~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~-V~ 80 (359)
T 3lnn_A 46 LPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDE-VK 80 (359)
T ss_dssp EEEEEECCSSSEEEECCSSCEEEEECCSCTTCE-EC
T ss_pred EEEEEEECCCcEEEEeccCCEEEEEEEcCCCCE-Ec
Confidence 34566653 557899999999999999999984 53
No 91
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=88.96 E-value=0.43 Score=31.06 Aligned_cols=22 Identities=23% Similarity=0.287 Sum_probs=20.6
Q ss_pred EEEEcCCCCEEcCCCeEEEEec
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.+|++++|+.|++|++|++++.
T Consensus 86 v~~~~~dG~~v~~g~~v~~i~G 107 (300)
T 3l0g_A 86 YEIHKKDGDITGKNSTLVSGEA 107 (300)
T ss_dssp EEECCCTTCEECSSCEEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEEE
Confidence 5899999999999999999985
No 92
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=88.80 E-value=0.24 Score=29.45 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.4
Q ss_pred EEEEcCCCCEEcCCCeEEEEec
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.+.+++.||+|++||.|+++.-
T Consensus 96 F~~~V~~Gd~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 96 FTSFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp EEESCCCCSEECSEEEEEEECH
T ss_pred cEEEEeCCCEEcCCCEEEEECH
Confidence 4569999999999999999964
No 93
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=88.75 E-value=0.31 Score=31.31 Aligned_cols=22 Identities=23% Similarity=0.361 Sum_probs=20.5
Q ss_pred EEEEcCCCCEEcCCCeEEEEec
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
++|++++|+.|++|++|++++.
T Consensus 73 v~~~~~dG~~v~~g~~v~~i~G 94 (285)
T 1o4u_A 73 SKFNVEDGEYLEGTGVIGEIEG 94 (285)
T ss_dssp EEESCCTTCEEESCEEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEEE
Confidence 6799999999999999999985
No 94
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=88.58 E-value=0.46 Score=30.85 Aligned_cols=22 Identities=32% Similarity=0.866 Sum_probs=20.5
Q ss_pred EEEEcCCCCEEcCCCeEEEEec
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.+|++++|+.|.+|++|++++.
T Consensus 88 v~~~~~dG~~v~~g~~l~~v~G 109 (298)
T 3gnn_A 88 VDWRHREGDRMSADSTVCELRG 109 (298)
T ss_dssp EEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEEe
Confidence 5799999999999999999985
No 95
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=88.26 E-value=0.49 Score=30.46 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=20.6
Q ss_pred EEEEcCCCCEEcCCCeEEEEec
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
++|++++|+.|.+|++|++++.
T Consensus 87 v~~~~~dG~~v~~g~~~~~v~G 108 (296)
T 1qap_A 87 LTWHVDDGDAIHANQTVFELQG 108 (296)
T ss_dssp EEESCCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 6799999999999999999986
No 96
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=88.18 E-value=0.29 Score=29.41 Aligned_cols=23 Identities=13% Similarity=0.084 Sum_probs=19.9
Q ss_pred EEEEEcCCCCEEcCCCeEEEEec
Q psy10440 13 IVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
+.++.|+.||.|++||.|+.+-.
T Consensus 82 L~~i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 82 MDQIQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp EESCCCCTTCEECTTCEEEEECS
T ss_pred CCccccCCCCEEcCCCEEEeecC
Confidence 34567999999999999999975
No 97
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=88.12 E-value=0.51 Score=30.95 Aligned_cols=23 Identities=26% Similarity=0.835 Sum_probs=21.0
Q ss_pred EEEEEcCCCCEEcCCCeEEEEec
Q psy10440 13 IVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
-.+|++++|+.|.+|++|++++.
T Consensus 109 ~v~~~~~dG~~v~~g~~l~~v~G 131 (320)
T 3paj_A 109 SIEWHVQDGDTLTPNQTLCTLTG 131 (320)
T ss_dssp EEEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEEeCCCCEecCCCEEEEEEe
Confidence 36899999999999999999985
No 98
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=87.71 E-value=0.1 Score=32.51 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=0.0
Q ss_pred CeEEEEEEEcCCCCE-EcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDA-VAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~-V~~g~~l~~ie~ 35 (64)
..|+|.++++++|+. |..|+.|+.|+.
T Consensus 53 ~~G~v~~i~v~~G~~~V~~G~~l~~i~~ 80 (229)
T 1zy8_K 53 DDGILAKIVVEEGSKNIRLGSLIGLIVE 80 (229)
T ss_dssp ----------------------------
T ss_pred CCeEEEEEEecCCCeeecCCCEEEEEec
Confidence 469999999999997 999999999864
No 99
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=86.29 E-value=0.57 Score=30.14 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=20.3
Q ss_pred EEEEcCCCCEEcCCCeEEEEec
Q psy10440 14 VKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 14 ~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
++|++++|+.|.+|++|++++.
T Consensus 73 v~~~~~dG~~v~~g~~l~~v~G 94 (299)
T 2jbm_A 73 VSWFLPEGSKLVPVARVAEVRG 94 (299)
T ss_dssp EEESSCTTCEECSSEEEEEEEE
T ss_pred EEEEcCCCCCCCCCCEEEEEEE
Confidence 5689999999999999999985
No 100
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=86.29 E-value=0.81 Score=28.06 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=23.8
Q ss_pred EcCCCCEEcCCCeEEEEecCceEEEEecCCCeEE
Q psy10440 17 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGIL 50 (64)
Q Consensus 17 ~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i 50 (64)
+|++||.|++|+.|+. -....|-.+|++
T Consensus 143 ~V~eGd~V~~Ge~L~D------G~~~~~~~~~~~ 170 (193)
T 2xha_A 143 RIKKGKEVKQGEMLAE------ARKFFAKVSGRV 170 (193)
T ss_dssp TSCTTCEECTTCEEEC------CEEEECSSCEEE
T ss_pred ccCCCCEECCCCCccc------CccccccccceE
Confidence 7899999999999886 456778888887
No 101
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=84.70 E-value=1 Score=30.58 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=22.7
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQTDK 37 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~~k 37 (64)
+-=+.++++.||.|++||+|++|-++.
T Consensus 375 ~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 375 AVGIVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp TCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred CcCeeEeccCCCEECCCCeEEEEEcCC
Confidence 344678999999999999999997653
No 102
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=84.43 E-value=1 Score=30.53 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=22.6
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQTDK 37 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~~k 37 (64)
+-=+.++++.||.|++||+|++|-++.
T Consensus 367 ~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 367 GVGVYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp TCEEEESCCTTCEECTTSEEEEEEECS
T ss_pred CcCeeeeccCCCEeCCCCeEEEEEeCC
Confidence 334678999999999999999997653
No 103
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=84.39 E-value=0.7 Score=29.10 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 12 TIVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 12 ~i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
-+.++.|+.|+.|++||.|+.+-..
T Consensus 131 HL~~i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 131 SLSEVSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp EESEESCCTTCEECTTCEEEECBCC
T ss_pred cCCccccCCCCEECCCCEEEEeCCc
Confidence 3457889999999999999998754
No 104
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=83.77 E-value=0.8 Score=29.30 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.4
Q ss_pred EEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 13 IVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
+.++.|+.||.|++||.|+.+.+.
T Consensus 229 L~~i~V~~G~~V~~Gq~IG~vG~t 252 (282)
T 2hsi_A 229 LSKIDVKLGQQVPRGGVLGKVGAT 252 (282)
T ss_dssp ESEECSCTTCEECTTCEEEECCCT
T ss_pred CCccccCCcCEECCCCEEEEECCC
Confidence 446789999999999999998653
No 105
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=83.65 E-value=1.2 Score=34.42 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=33.9
Q ss_pred EEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCC
Q psy10440 15 KWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN 58 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g 58 (64)
.+++++|+.|++||.|++... -+.+|.|.++|+|.=....+|
T Consensus 1002 ~l~v~~g~~V~~g~~ia~wDp--~~~piise~~G~v~f~d~~~g 1043 (1407)
T 3lu0_D 1002 VLAKGDGEQVAGGETVANWDP--HTMPVITEVSGFVRFTDMIDG 1043 (1407)
T ss_dssp EESSCSSCEECTTCEEEECCS--SCCCEECSSCEEEEEESCCBT
T ss_pred EEEEcCCCEecCCCEEEEEec--CceeEEeccceEEEEeeeccC
Confidence 578999999999999999865 478899999999954334444
No 106
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=83.11 E-value=1.3 Score=30.35 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440 12 TIVKWLKKEGDAVAPGDVLCEIQTDK 37 (64)
Q Consensus 12 ~i~~w~v~~G~~V~~g~~l~~ie~~k 37 (64)
-=+.++++.||.|++||+|++|-++.
T Consensus 411 ~Gi~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 411 VGAELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp CEEEECSCTTCEECTTCEEEEEEESS
T ss_pred CceEEEccCCCEECCCCeEEEEEcCC
Confidence 34678999999999999999997643
No 107
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=83.04 E-value=1.1 Score=30.53 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=22.6
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..+-=+.++++.||.|++||+|++|-.
T Consensus 376 d~~~Gi~l~~~~G~~V~~g~~l~~i~~ 402 (436)
T 3h5q_A 376 DLAVGIVLNKKIGDKVEEGESLLTIHS 402 (436)
T ss_dssp CTTCEEEESCCTTCEECTTSEEEEEEE
T ss_pred CCCCceEEecCCcCEeCCCCeEEEEeC
Confidence 344457889999999999999999973
No 108
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=82.98 E-value=0.9 Score=29.44 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=20.4
Q ss_pred EEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 13 IVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
+.++.|+.|+.|++||.|+.+.+.
T Consensus 236 Ls~i~Vk~Gq~V~~GqvIG~vG~T 259 (291)
T 1qwy_A 236 NNRLTVSAGDKVKAGDQIAYSGST 259 (291)
T ss_dssp ESEECCCTTCEECTTCEEEECCCC
T ss_pred CCccccCCcCEECCCCEEEEECCC
Confidence 456789999999999999998653
No 109
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=80.73 E-value=2.4 Score=25.75 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=18.2
Q ss_pred CCeEEEEecCceEEEEecCCCeEEEEEe
Q psy10440 27 GDVLCEIQTDKAVMSFETEEEGILAKIL 54 (64)
Q Consensus 27 g~~l~~ie~~k~~~~i~ap~~G~i~~~~ 54 (64)
|+.++..=++ -.|+||++|+|..+.
T Consensus 62 GdG~AI~P~~---g~v~AP~dG~V~~vf 86 (183)
T 3our_B 62 GDGIAIKPTG---NKMVAPVNGTIGKIF 86 (183)
T ss_dssp CEEEEEEECS---SEEECSSSEEEEEEC
T ss_pred cCeEEEEcCC---CEEEeCCCeEEEEEC
Confidence 6666665443 379999999998764
No 110
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=80.54 E-value=1.2 Score=28.04 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEE-EcCCCCEEcCCCeEEEEecC
Q psy10440 13 IVKW-LKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 13 i~~w-~v~~G~~V~~g~~l~~ie~~ 36 (64)
+.++ .|+.||.|++||.|+.+...
T Consensus 178 L~~~~~V~~G~~V~~Gq~IG~vG~t 202 (252)
T 3nyy_A 178 LDSYAELEKGDPVKAGDLLGYMGDS 202 (252)
T ss_dssp ESEECSCCTTCEECTTCEEEECBCC
T ss_pred CCCCCcCCCCCEECCCCEEEEECCC
Confidence 4455 79999999999999998643
No 111
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=79.94 E-value=1.1 Score=29.53 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=24.5
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
..|.|.+.++++|+.|..|++|+.|-.
T Consensus 214 ~~G~V~~~~v~~G~~V~~G~~l~~I~~ 240 (413)
T 3ne5_B 214 IDGVITAFDLRAGMNIAKDNVVAKIQG 240 (413)
T ss_dssp SSEEEEECCCCTTCEECTTSCSEEEEE
T ss_pred CCeEEEEEEcCCCCEECCCCcEEEEeC
Confidence 469999999999999999999998854
No 112
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=79.11 E-value=1.4 Score=28.71 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.2
Q ss_pred EEEEEcCCCCEEcCCCeEEEEecC
Q psy10440 13 IVKWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 13 i~~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
+.++.|+.|+.|++||.|+.+.+.
T Consensus 281 l~~~~v~~G~~V~~G~~Ig~~G~t 304 (361)
T 2gu1_A 281 LDKILVKKGQLVKRGQKIALAGAT 304 (361)
T ss_dssp ESEECCCTTCEECTTCEEEECCCC
T ss_pred cCccccCCcCEECCCCEEEEECCC
Confidence 445789999999999999998653
No 113
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=78.73 E-value=1.7 Score=26.22 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=17.6
Q ss_pred EEEcCCCCEEcCCCeEEEEe
Q psy10440 15 KWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~~ie 34 (64)
.+.+++|+.|.+||.|+.+-
T Consensus 167 ~i~v~dG~~V~~GdvLArip 186 (190)
T 2auk_A 167 IVQLEDGVQISSGDTLARIP 186 (190)
T ss_dssp EESSCTTCEECTTCEEEEEE
T ss_pred EEEEcCCCEEcCCCEEEEcc
Confidence 45689999999999999885
No 114
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=78.45 E-value=0.75 Score=34.51 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=23.2
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
..|+|.++++++|+.|..||.|+.|+
T Consensus 1139 ~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1139 KDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp SSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEec
Confidence 46899999999999999999999876
No 115
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=78.14 E-value=1.4 Score=28.29 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.2
Q ss_pred EEEEcCCCCEEcCC------CeEEEEec
Q psy10440 14 VKWLKKEGDAVAPG------DVLCEIQT 35 (64)
Q Consensus 14 ~~w~v~~G~~V~~g------~~l~~ie~ 35 (64)
++|++++|+.|.+| ++|++++.
T Consensus 69 v~~~~~eG~~v~~g~~~~~~~~l~~v~G 96 (294)
T 3c2e_A 69 VEWLFKEGSFLEPSKNDSGKIVVAKITG 96 (294)
T ss_dssp EEESSCTTCEECGGGSSSSCEEEEEEEE
T ss_pred EEEEeCCCCEeCCCCCCCCCcEEEEEEE
Confidence 56899999999999 99999985
No 116
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=77.40 E-value=1.3 Score=28.55 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=25.0
Q ss_pred EEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 30 LCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 30 l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
-+.++.. ....|.++.+|+|.++++++|++ |.
T Consensus 35 ~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~-V~ 66 (369)
T 1vf7_A 35 PGRTNAF-RIAEVRPQVNGIILKRLFKEGSD-VK 66 (369)
T ss_dssp EEECEES-CEEEECCSSCEEEEECCSCSSEE-EC
T ss_pred EEEEEee-eEEEEEeeCceEEEEEEcCCCCE-Ec
Confidence 3455554 36789999999999999999984 53
No 117
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=77.39 E-value=0.37 Score=31.35 Aligned_cols=36 Identities=6% Similarity=-0.086 Sum_probs=25.2
Q ss_pred EcCCCCEEcCCCeEEEEecC-----ceEEEEecCCCeEEEE
Q psy10440 17 LKKEGDAVAPGDVLCEIQTD-----KAVMSFETEEEGILAK 52 (64)
Q Consensus 17 ~v~~G~~V~~g~~l~~ie~~-----k~~~~i~ap~~G~i~~ 52 (64)
.++.|+.|++||+|+.+-.. .....+.+|.+|++..
T Consensus 278 ~~~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~g 318 (341)
T 1yw4_A 278 SVENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKPG 318 (341)
T ss_dssp TCCBTEECCSSCCCC--------CCSSCCEEESCCTTCCSS
T ss_pred cCCCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCceee
Confidence 35789999999999988553 2355799999998754
No 118
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=77.08 E-value=1 Score=30.61 Aligned_cols=27 Identities=19% Similarity=0.152 Sum_probs=22.6
Q ss_pred EEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440 11 GTIVKWLKKEGDAVAPGDVLCEIQTDK 37 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~~l~~ie~~k 37 (64)
+-=+.++++.||.|++||+|++|-++.
T Consensus 380 ~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 380 SVGFTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp SCEEESCCCTTCEEBTTBCSEEEEESS
T ss_pred CcCeeEeccCCCEECCCCeEEEEecCC
Confidence 444678999999999999999997653
No 119
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=76.86 E-value=4.5 Score=26.69 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=25.6
Q ss_pred eEEEEEE-----EcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEE
Q psy10440 10 EGTIVKW-----LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILA 51 (64)
Q Consensus 10 ~g~i~~w-----~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~ 51 (64)
+.-|-+| +|++||.|++||.|+. -..++|-.+|++.
T Consensus 171 eylip~~~~k~~~v~~Gd~V~~G~~l~d------G~~~~~~~~~~~e 211 (352)
T 2xhc_A 171 VYYIPLDVFDRDRIKKGKEVKQGEMLAE------ARKFFAKVSGRVE 211 (352)
T ss_dssp EEEEEGGGCCTTTSCTTCEECTTCEEEC------CEEEECSSCEEEE
T ss_pred EEEEcCCCCcCeeeCCCCEEeCCCCccc------ccccccccCceEE
Confidence 3445555 6999999999999986 3445666666653
No 120
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=76.45 E-value=0.83 Score=29.12 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=26.6
Q ss_pred CeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440 28 DVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63 (64)
Q Consensus 28 ~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~ 63 (64)
..-+.++.. ....|.++.+|+|.++++++|++ |.
T Consensus 22 ~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~-V~ 55 (369)
T 4dk0_A 22 VATGSIESI-NTVDVGAQVSGKITKLYVKLGQQ-VK 55 (369)
T ss_dssp EEEEEEECS-SCCCBCCCSCSBCCEECCCTTSC-CC
T ss_pred EEeEEEEee-eeEEEecCCCcEEEEEEECCCCE-EC
Confidence 344566654 36689999999999999999994 63
No 121
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=76.13 E-value=5.8 Score=24.88 Aligned_cols=27 Identities=11% Similarity=0.271 Sum_probs=23.8
Q ss_pred CeEEEEEEEcCCCCEEcCCCe---EEEEec
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDV---LCEIQT 35 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~---l~~ie~ 35 (64)
..|.|.++++..|+.|..|+. |+.|-.
T Consensus 160 ~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~ 189 (341)
T 3fpp_A 160 MAGEVTQITTLQGQTVIAAQQAPNILTLAD 189 (341)
T ss_dssp SSEEEEEESSCTTCEECCTTSCCCCEEEEC
T ss_pred CCeEEEEEecCCCCEEecCCCCceEEEEec
Confidence 469999999999999999997 887765
No 122
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=75.73 E-value=0.95 Score=29.36 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=18.9
Q ss_pred EEEcCCCCEEcCCCeEEEEecC
Q psy10440 15 KWLKKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~~ie~~ 36 (64)
++.|+.||.|++||.|+.+-+.
T Consensus 250 ~~~V~~G~~V~~Gq~Ig~~G~t 271 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHTGIG 271 (334)
T ss_dssp SCCCCTTCEECTTSEEEECBCC
T ss_pred cccCCCcCEECCCCEEEeecCC
Confidence 4579999999999999998653
No 123
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=73.89 E-value=0.45 Score=34.13 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.3
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLCEIQ 34 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~~ie 34 (64)
..|+|.++++++|+.|..|+.|+.|+
T Consensus 693 ~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 693 MEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp CCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred CCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 46899999999999999999998764
No 124
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=65.76 E-value=18 Score=25.69 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=27.1
Q ss_pred EcCCCCEEcCCCeEEEEecCc-eEEEEecC--CCeEEEEE
Q psy10440 17 LKKEGDAVAPGDVLCEIQTDK-AVMSFETE--EEGILAKI 53 (64)
Q Consensus 17 ~v~~G~~V~~g~~l~~ie~~k-~~~~i~ap--~~G~i~~~ 53 (64)
.++.||.|..||.++++.-.. ....|..| ..|+|+.+
T Consensus 130 ~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i 169 (600)
T 3vr4_A 130 TIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI 169 (600)
T ss_dssp CSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe
Confidence 479999999999999985433 33555433 67888776
No 125
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=62.52 E-value=0.96 Score=24.19 Aligned_cols=16 Identities=38% Similarity=0.495 Sum_probs=12.5
Q ss_pred EEcCCCCEEcCCCeEE
Q psy10440 16 WLKKEGDAVAPGDVLC 31 (64)
Q Consensus 16 w~v~~G~~V~~g~~l~ 31 (64)
+.|++||.|.+||.|.
T Consensus 67 l~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 67 LNVFEGERVERGDVIS 82 (84)
T ss_dssp CSSCTTEEECBSCSSB
T ss_pred eEeCCCCEECCCCCcc
Confidence 3588899999998763
No 126
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=57.38 E-value=37 Score=24.09 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=25.7
Q ss_pred EcCCCCEEcCCCeEEEEecC-ceEEEEe--cCCCeEEEEE
Q psy10440 17 LKKEGDAVAPGDVLCEIQTD-KAVMSFE--TEEEGILAKI 53 (64)
Q Consensus 17 ~v~~G~~V~~g~~l~~ie~~-k~~~~i~--ap~~G~i~~~ 53 (64)
.++.||.|..|+.++++.-. -....|. ....|++..+
T Consensus 123 ~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~~i 162 (588)
T 3mfy_A 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEI 162 (588)
T ss_dssp CCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE
T ss_pred ccccCcccccCceEEEEecccceeeeeecCCCCCceEEEe
Confidence 47899999999999988543 3344443 2267777665
No 127
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=53.74 E-value=51 Score=23.33 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=26.2
Q ss_pred EcCCCCEEcCCCeEEEEecCceEEEEe-c-CCCeEEEEE
Q psy10440 17 LKKEGDAVAPGDVLCEIQTDKAVMSFE-T-EEEGILAKI 53 (64)
Q Consensus 17 ~v~~G~~V~~g~~l~~ie~~k~~~~i~-a-p~~G~i~~~ 53 (64)
.++.||.|..||.++++........+. + ..+|++..+
T Consensus 122 ~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~~i 160 (578)
T 3gqb_A 122 MVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEV 160 (578)
T ss_dssp CCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEEEE
T ss_pred ccccCccccccceeeeecccccceecccCCCcCceeEEe
Confidence 479999999999999985443334443 2 267877665
No 128
>1yw6_A Succinylglutamate desuccinylase; alpha-beta protein., structural genomics, PSI, protein structure initiative; 3.10A {Escherichia coli} SCOP: c.56.5.7
Probab=53.18 E-value=6 Score=25.45 Aligned_cols=34 Identities=9% Similarity=-0.063 Sum_probs=25.8
Q ss_pred EcCCCCEEcCCCeEEEEecCc-----eEEEEecCCCeEE
Q psy10440 17 LKKEGDAVAPGDVLCEIQTDK-----AVMSFETEEEGIL 50 (64)
Q Consensus 17 ~v~~G~~V~~g~~l~~ie~~k-----~~~~i~ap~~G~i 50 (64)
.++.|+.|++||+|+.+-... ....+.+|.+|.+
T Consensus 276 ~~~~g~~v~~G~~L~~~~~~~~~~~~~~~~iv~P~~gv~ 314 (335)
T 1yw6_A 276 DTLNFMPFEKGTLLAQDGEERFTVTHDVEYVLFPNPLVA 314 (335)
T ss_dssp TCCBTCEEETTCBCEECSSCCCBCCSSEEEEECCSSCCT
T ss_pred ccCCcCCcCCCCEEEEeCCcceEeCCCCeEEEcCCCCCc
Confidence 458999999999999985432 2445888888865
No 129
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=50.87 E-value=12 Score=18.28 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=18.7
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEE
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLC 31 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~ 31 (64)
..|+|++-....|..|.+|+.|-
T Consensus 43 ~~G~Vi~q~P~~G~~v~~g~~V~ 65 (71)
T 3ouv_A 43 PAGEVTGTNPPAGTTVPVDSVIE 65 (71)
T ss_dssp CTTBEEEEESCTTCEEETTSCEE
T ss_pred CCCEEEEeeCCCCCCcCCCCEEE
Confidence 45788888888999999888765
No 130
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=41.16 E-value=17 Score=24.16 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=20.6
Q ss_pred eEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440 10 EGTIVKWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 10 ~g~i~~w~v~~G~~V~~g~~l~~ie~ 35 (64)
.++| +.+++|+.|..|+++++++.
T Consensus 76 ~~~i--~~~~eG~~v~~ge~ll~v~G 99 (395)
T 2i14_A 76 PVNV--YAMPEGTIFHPYEPVLQIEG 99 (395)
T ss_dssp SEEE--EECCTTCEECTTSCSEEEEE
T ss_pred CcEE--EEEcCCCEecCCCEEEEEEe
Confidence 3555 48999999999999999986
No 131
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1
Probab=37.88 E-value=20 Score=24.60 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=19.2
Q ss_pred EEEcCCCCEEcCCCeEEEEec
Q psy10440 15 KWLKKEGDAVAPGDVLCEIQT 35 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~~ie~ 35 (64)
-|.+++|+.|..|+++++|+.
T Consensus 99 i~av~EG~~v~~g~pll~v~G 119 (494)
T 2f7f_A 99 VRSALEGDLVFNNEPLIQIEG 119 (494)
T ss_dssp EEECCTTCEECTTSCSEEEEE
T ss_pred EEEecCCCcccCCCEEEEEEE
Confidence 578899999999999999986
No 132
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=34.38 E-value=12 Score=24.73 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=16.9
Q ss_pred cCCCCEEcCCCeEEEEecC
Q psy10440 18 KKEGDAVAPGDVLCEIQTD 36 (64)
Q Consensus 18 v~~G~~V~~g~~l~~ie~~ 36 (64)
+..|+.|++||.|+.+.+.
T Consensus 299 v~~G~~V~~Gq~IG~vG~t 317 (371)
T 3slu_A 299 SQAQGNVRGGEVIGFVGST 317 (371)
T ss_dssp CCCCSBCCSSSEEEECBCC
T ss_pred CCCcCEECCCCEEEEeCCC
Confidence 7899999999999998653
No 133
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=33.40 E-value=15 Score=28.57 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=27.3
Q ss_pred EEcCCCCEEcCCCeEEEE--ecCce--------------------EEEEecCCCeEEE
Q psy10440 16 WLKKEGDAVAPGDVLCEI--QTDKA--------------------VMSFETEEEGILA 51 (64)
Q Consensus 16 w~v~~G~~V~~g~~l~~i--e~~k~--------------------~~~i~ap~~G~i~ 51 (64)
+.|++|+.|.+||+|+.+ |+.|+ ...+-|+++|+|.
T Consensus 1107 ~~v~~g~~v~~g~vlakip~~~~k~~DIt~GLprv~eLfEar~pk~~a~i~ei~G~v~ 1164 (1407)
T 3lu0_D 1107 VQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVS 1164 (1407)
T ss_dssp CCCCSSCEECTTCEEECCCCCCCCSSCCCCSHHHHHHHHTTCCCSSCCCCCSSCSCCE
T ss_pred EEecCCCEeccCceEEecchhhccccchhcCcHHHHHHHhccCCCCceEEeccceEEE
Confidence 367899999999999988 45443 1237788888884
No 134
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=30.79 E-value=47 Score=22.04 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEEEEcCCCCEEcCCC------eEEEEec
Q psy10440 11 GTIVKWLKKEGDAVAPGD------VLCEIQT 35 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~------~l~~ie~ 35 (64)
+++ +.+.+|+.|..|+ ++++++.
T Consensus 75 ~~i--~~~~eG~~v~~g~~~g~~~~ll~v~G 103 (398)
T 2i1o_A 75 VDL--YAIPEGTILFPRDANGLPVPFIRVEG 103 (398)
T ss_dssp CEE--EECCTTCEECSBCTTSCBCEEEEEEE
T ss_pred eEE--EEeCCCCEECCCCcccccceEEEEEE
Confidence 455 4899999999999 9999985
No 135
>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Probab=29.27 E-value=15 Score=23.22 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=13.0
Q ss_pred EEcCCCCEEcCCCeEE
Q psy10440 16 WLKKEGDAVAPGDVLC 31 (64)
Q Consensus 16 w~v~~G~~V~~g~~l~ 31 (64)
..|.+||.|+.||+|-
T Consensus 214 LiV~~G~~v~~~qpLT 229 (251)
T 1e2w_A 214 LIVKEGQTVQADQPLT 229 (251)
T ss_dssp BCCCTTCEECTTCBCB
T ss_pred EEEecCCEEecCCccc
Confidence 4688999999998874
No 136
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=28.02 E-value=67 Score=16.40 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=31.8
Q ss_pred CCeEEEEEEEcCCCCEEcCCCeEEEEecCce----------EEEEecCCCeEE
Q psy10440 8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDKA----------VMSFETEEEGIL 50 (64)
Q Consensus 8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~----------~~~i~ap~~G~i 50 (64)
.+.++=.-|..-.|+.|.+|.+|+.--..|. ...|.|-.+|+|
T Consensus 15 dS~~krlGvK~~~Gq~V~aG~IivrQRgtk~hPG~nVg~GkD~TLfAl~~G~V 67 (69)
T 2ftc_O 15 KSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLYALEEGIV 67 (69)
T ss_pred CCCCceeeEEecCCeEecCCeEEEecCCCeEcCCCCeeecCCCcEEEccceEE
Confidence 3467778889999999999999987543222 335778788776
No 137
>2kue_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=27.62 E-value=39 Score=18.54 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=19.2
Q ss_pred CeEEEEEEEcCCCCEEcCCCeEE
Q psy10440 9 TEGTIVKWLKKEGDAVAPGDVLC 31 (64)
Q Consensus 9 ~~g~i~~w~v~~G~~V~~g~~l~ 31 (64)
..|+|++-....|..+.+|+.|-
T Consensus 111 ~~G~Vi~q~p~~G~~v~~g~~V~ 133 (138)
T 2kue_A 111 PAGEVTGTNPPAGTTVPVDSVIE 133 (138)
T ss_dssp CCSBEEEESSCTTCEEETTSCEE
T ss_pred CCCEEEEEcCCCCCCcCCCCEEE
Confidence 46889999999999999988764
No 138
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transpo; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=27.42 E-value=15 Score=23.20 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=12.9
Q ss_pred EEcCCCCEEcCCCeEE
Q psy10440 16 WLKKEGDAVAPGDVLC 31 (64)
Q Consensus 16 w~v~~G~~V~~g~~l~ 31 (64)
..|.+||.|+.||+|-
T Consensus 213 LiV~~G~~v~~~qpLT 228 (249)
T 1ci3_M 213 LIVSEGEEVAAGAALT 228 (249)
T ss_dssp BCCCTTCEECTTCBSB
T ss_pred EEEecCCEEecCCccc
Confidence 4688999999998874
No 139
>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Probab=27.01 E-value=16 Score=23.12 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=13.3
Q ss_pred EEEcCCCCEEcCCCeEE
Q psy10440 15 KWLKKEGDAVAPGDVLC 31 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~ 31 (64)
+..|.+||.|+.||+|-
T Consensus 212 ~LiV~~G~~v~~~qpLT 228 (249)
T 2jxm_B 212 ELIVAVGDTVEAGQLLT 228 (249)
T ss_dssp CBCCCTTCEECTTCBSB
T ss_pred eEEEecCCEEecCCccc
Confidence 34688999999998864
No 140
>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B*
Probab=26.78 E-value=16 Score=23.15 Aligned_cols=17 Identities=24% Similarity=0.394 Sum_probs=13.6
Q ss_pred EEEcCCCCEEcCCCeEE
Q psy10440 15 KWLKKEGDAVAPGDVLC 31 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~ 31 (64)
+..|.+||.|+.||+|-
T Consensus 212 eLiV~~G~~v~~~qpLT 228 (252)
T 1hcz_A 212 ELLVSEGESIKLDQPLT 228 (252)
T ss_dssp CBCCCTTCEECTTCBSB
T ss_pred eEEEecCCEEecCCccc
Confidence 35688999999999874
No 141
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=23.35 E-value=20 Score=23.12 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=12.8
Q ss_pred EEcCCCCEEcCCCeEE
Q psy10440 16 WLKKEGDAVAPGDVLC 31 (64)
Q Consensus 16 w~v~~G~~V~~g~~l~ 31 (64)
..|.+||.|+.||+|-
T Consensus 214 LiV~eG~~v~~~qpLT 229 (292)
T 1q90_A 214 LIVKEGQTVQADQPLT 229 (292)
T ss_dssp BCCCTTCEECTTCBSB
T ss_pred EEEecCCEEecCCccc
Confidence 4678899999988764
No 142
>3gqh_A Preneck appendage protein; beta barrel, viral protein; 1.80A {Bacillus phage PHI29} PDB: 3gqk_A*
Probab=22.80 E-value=92 Score=18.48 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=21.0
Q ss_pred EEEEEEEcCCCCEEcCCC------eEEEEecCceEEEEecCCC
Q psy10440 11 GTIVKWLKKEGDAVAPGD------VLCEIQTDKAVMSFETEEE 47 (64)
Q Consensus 11 g~i~~w~v~~G~~V~~g~------~l~~ie~~k~~~~i~ap~~ 47 (64)
|-|-++++...++|..|+ .|++-......+.+..|++
T Consensus 108 GLiGql~VR~D~Tv~~g~y~~~~~GIaTk~~~g~Vmk~t~py~ 150 (163)
T 3gqh_A 108 GLLGQIAVRIDETVKQGHSIDAVGGVATDGDNFIVQEITTPYT 150 (163)
T ss_dssp EEEEEEEEEECTTCCTTSEEEEETTEEEEESBSEEEEEEECCC
T ss_pred eeeeEEEEecCCceecCCEEecCCCEeecCCCCcEEEEeccCC
Confidence 666777776666665555 4454433334555655554
No 143
>2exd_A NFED short homolog; membrane protein; NMR {Pyrococcus horikoshii} SCOP: b.40.12.1
Probab=21.02 E-value=96 Score=15.76 Aligned_cols=29 Identities=17% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEcCCCCEEcCCCeEEEEecCceEEEEe
Q psy10440 15 KWLKKEGDAVAPGDVLCEIQTDKAVMSFE 43 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ 43 (64)
.|.+.-++.+.+|+.+-.+.-+.....|+
T Consensus 39 ~W~A~s~~~i~~G~~V~Vv~veG~~L~V~ 67 (80)
T 2exd_A 39 KWIAYSDEKLSLGDRVMVVDVDGLKLKVK 67 (80)
T ss_dssp EEEECCSSCCCTTCEEEEEEECSSCEEEE
T ss_pred EEEEEECCccCCCCEEEEEEEECCEEEEE
Confidence 47776667788888888776665555444
No 144
>2k5h_A Conserved protein; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Methanothermobacterthermautotrophicus str}
Probab=20.94 E-value=1e+02 Score=16.36 Aligned_cols=29 Identities=14% Similarity=0.328 Sum_probs=17.1
Q ss_pred EEEcCCCCEEcCCCeEEEEecCceEEEEe
Q psy10440 15 KWLKKEGDAVAPGDVLCEIQTDKAVMSFE 43 (64)
Q Consensus 15 ~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ 43 (64)
.|.+.-++.+.+|+.+-.++-+.....|+
T Consensus 65 ~W~A~s~~~i~~G~~V~Vv~veG~~LiV~ 93 (101)
T 2k5h_A 65 TWRATSGTVLDVGEEVSVKAIEGVKLVVE 93 (101)
T ss_dssp EEEEECSSCBCTTCEEEEEEECSSSEEEE
T ss_pred EEEEEeCCcCCCCCEEEEEEEECCEEEEE
Confidence 46555566677777777666554444443
Done!