RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10440
(64 letters)
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 108 bits (273), Expect = 3e-30
Identities = 42/64 (65%), Positives = 47/64 (73%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
MP+LSPTM EGT+ KWLKKEGD V GDV+ EI+TDKA M E +EG L KILVPE T
Sbjct: 7 MPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTE 66
Query: 61 DGKV 64
KV
Sbjct: 67 GVKV 70
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model represents one of several closely related clades
of the dihydrolipoamide acetyltransferase subunit of
the pyruvate dehydrogenase complex. It includes
sequences from mitochondria and from alpha and beta
branches of the proteobacteria, as well as from some
other bacteria. Sequences from Gram-positive bacteria
are not included. The non-enzymatic homolog protein X,
which serves as an E3 component binding protein, falls
within the clade phylogenetically but is rejected by
its low score [Energy metabolism, Pyruvate
dehydrogenase].
Length = 436
Score = 106 bits (265), Expect = 3e-29
Identities = 45/64 (70%), Positives = 49/64 (76%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
MP+LSPTMT G + KWLKKEGD V PGDV+ EI+TDKA M FE EEG LAKILVPE T
Sbjct: 4 MPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTK 63
Query: 61 DGKV 64
D V
Sbjct: 64 DVPV 67
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 99 bits (249), Expect = 1e-26
Identities = 40/64 (62%), Positives = 49/64 (76%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
MPSLSPTMTEG I +WLKKEGD V+PG+VLCE++TDKA + E EEG LAKI+ +
Sbjct: 117 MPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAK 176
Query: 61 DGKV 64
+ KV
Sbjct: 177 EIKV 180
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 96.4 bits (241), Expect = 9e-26
Identities = 28/60 (46%), Positives = 35/60 (58%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
MP L MTEG IV+WL K GD V G L E++TDKA + + G +AK+LV E
Sbjct: 7 MPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDV 66
Score = 35.9 bits (84), Expect = 4e-04
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEE 47
GT+ K L +EGD V G V+ I+ + + E
Sbjct: 53 AGTVAKLLVEEGDVVPVGSVIAVIEEEGEAEAAAAAEA 90
>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl
acyltransferase component (E2) of 2-oxo acid
dehydrogenases. 2-oxo acid dehydrogenase multienzyme
complexes, like pyruvate dehydrogenase (PDH),
2-oxoglutarate dehydrogenase (OGDH) and branched-chain
2-oxo acid dehydrogenase (BCDH), contain at least three
different enzymes, 2-oxo acid dehydrogenase (E1),
dihydrolipoyl acyltransferase (E2) and dihydrolipoamide
dehydrogenase (E3) and play a key role in redox
regulation. E2, the central component of the complex,
catalyzes the transfer of the acyl group of CoA from E1
to E3 via reductive acetylation of a lipoyl group
covalently attached to a lysine residue.
Length = 74
Score = 87.5 bits (218), Expect = 5e-25
Identities = 36/60 (60%), Positives = 43/60 (71%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
MP L +MTEGTIV+WL KEGD+V GDVL E++TDKA + E G+LAKILV E T
Sbjct: 5 MPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDT 64
Score = 30.1 bits (69), Expect = 0.015
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEI 33
G + K L +EGD V G V+ I
Sbjct: 51 AGVLAKILVEEGDTVPVGQVIAVI 74
>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide acyltransferase (E2) component, and
related enzymes [Energy production and conversion].
Length = 404
Score = 84.8 bits (210), Expect = 1e-21
Identities = 37/60 (61%), Positives = 42/60 (70%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
MP L TMTEGTIV+WLKK GD V GDVL E++TDKA M + G+LAKILV E T
Sbjct: 7 MPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDT 66
Score = 30.4 bits (69), Expect = 0.033
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEE 47
P G + K L +EGD V G V+ I+ + A E
Sbjct: 49 PAPDAGVLAKILVEEGDTVPVGAVIARIEEEGADAPAAAEAP 90
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit
dihydrolipoyllysine-residue acetyltransferase;
Provisional.
Length = 371
Score = 74.2 bits (183), Expect = 9e-18
Identities = 23/60 (38%), Positives = 31/60 (51%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
MP +MTEG + WL +EGD V GD L +++TDK E G L + + E T
Sbjct: 7 MPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGET 66
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase;
Validated.
Length = 407
Score = 64.9 bits (159), Expect = 2e-14
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 2 PSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
P+L ++TE TI W KK GDAV +VL EI+TDK V+ G+L++IL E T
Sbjct: 8 PTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDT 66
Score = 29.4 bits (67), Expect = 0.074
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEI 33
G + + L +EGD V G VL I
Sbjct: 54 GVLSEILAEEGDTVTVGQVLGRI 76
>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are
present in biotin-dependent
carboxylases/decarboxylases, the dihydrolipoyl
acyltransferase component (E2) of 2-oxo acid
dehydrogenases, and the H-protein of the glycine
cleavage system (GCS). These domains transport CO2,
acyl, or methylamine, respectively, between components
of the complex/protein via a biotinyl or lipoyl group,
which is covalently attached to a highly conserved
lysine residue.
Length = 73
Score = 59.0 bits (143), Expect = 7e-14
Identities = 28/59 (47%), Positives = 36/59 (61%)
Query: 2 PSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
P L+ + +GT+VKWLKK GD V GDVL EI+ KA E + G + K+LV E T
Sbjct: 5 PDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK 63
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
This model describes the TCA cycle 2-oxoglutarate
system E2 component, dihydrolipoamide
succinyltransferase. It is closely related to the
pyruvate dehydrogenase E2 component, dihydrolipoamide
acetyltransferase. The seed for this model includes
mitochondrial and Gram-negative bacterial forms.
Mycobacterial candidates are highly derived, differ in
having and extra copy of the lipoyl-binding domain at
the N-terminus. They score below the trusted cutoff,
but above the noise cutoff and above all examples of
dihydrolipoamide acetyltransferase [Energy metabolism,
TCA cycle].
Length = 403
Score = 62.8 bits (153), Expect = 1e-13
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 2 PSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
P L+ ++TEGT+ +W KK GD V + + EI+TDK V+ + +G+L +IL E T
Sbjct: 6 PELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDT 64
>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. This family
covers two Prosite entries, the conserved lysine
residue binds biotin in one group and lipoic acid in
the other. Note that the HMM does not currently
recognise the Glycine cleavage system H proteins.
Length = 73
Score = 54.5 bits (132), Expect = 4e-12
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
P + ++ EGT +WL K GD V G VLCE++ K M G++ +ILV E T
Sbjct: 5 SPMIGESVKEGT-AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKEGDT 63
Score = 25.3 bits (56), Expect = 1.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEI 33
G + + L KEGD V GD L +I
Sbjct: 51 GVVKEILVKEGDTVEVGDPLAKI 73
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 51.2 bits (123), Expect = 2e-09
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 2 PSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
P++ +++EGT+V+W KK GD V +V+C I+TDK + G++ KI E T
Sbjct: 50 PTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDT 108
Score = 23.9 bits (52), Expect = 6.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKA 38
G I K +EGD V G L EI T A
Sbjct: 96 GVITKIFAEEGDTVEVGAPLSEIDTGGA 123
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 49.8 bits (120), Expect = 4e-09
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
E +++WL KEGD V L ++TDKA M + G++ +I V T
Sbjct: 14 VEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDT 65
Score = 47.5 bits (114), Expect = 3e-08
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
TE +++WL K GD V L ++TDKA M + G++ +I V
Sbjct: 131 TEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDK 182
Score = 24.4 bits (54), Expect = 5.0
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKA 38
G + + K GD V+ G +L I+ A
Sbjct: 170 GVVKEIKVKVGDKVSVGSLLVVIEVAAA 197
Score = 24.0 bits (53), Expect = 7.3
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKA 38
P+ G + + K GD V+ G +L I+ A
Sbjct: 48 PSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAGA 80
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2
component, dihydrolipoamide succinyltransferase. This
model represents an Actinobacterial clade of E2 enzyme,
a component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 48.9 bits (116), Expect = 1e-08
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
MP+L ++TEGT+ WLK GD V + L E+ TDK + G+L +I PE+ T
Sbjct: 7 MPALGESVTEGTVTSWLKAVGDTVEADEPLLEVSTDKVDTEIPSPAAGVLLEIRAPEDDT 66
Score = 45.0 bits (106), Expect = 2e-07
Identities = 24/60 (40%), Positives = 32/60 (53%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
MP L ++TEGT+ WLK GD V + L E+ TDK + G L +I PE+ T
Sbjct: 131 MPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPEDDT 190
>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl
carrier protein (BCCP) domain is present in all
biotin-dependent enzymes, such as acetyl-CoA
carboxylase, pyruvate carboxylase, propionyl-CoA
carboxylase, methylcrotonyl-CoA carboxylase,
geranyl-CoA carboxylase, oxaloacetate decarboxylase,
methylmalonyl-CoA decarboxylase, transcarboxylase and
urea amidolyase. This domain functions in transferring
CO2 from one subsite to another, allowing
carboxylation, decarboxylation, or transcarboxylation.
During this process, biotin is covalently attached to a
specific lysine.
Length = 67
Score = 41.2 bits (98), Expect = 7e-07
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
GT+VK L KEGD V G L ++ K G++ +ILV E
Sbjct: 8 GTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQ 57
Score = 28.5 bits (65), Expect = 0.063
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEI 33
G + + L KEGD V G +L I
Sbjct: 45 GVVKEILVKEGDQVEAGQLLVVI 67
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 41.3 bits (96), Expect = 4e-06
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+P + ++T+GT+ +LKK G+ V + + +I+TDK + + G++ + LV E T
Sbjct: 96 VPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDT 155
Score = 25.5 bits (55), Expect = 2.4
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGI 49
G I ++L KEGD V PG + I + S T + I
Sbjct: 143 GVIQEFLVKEGDTVEPGTKVAIISKSEDAASQVTPSQKI 181
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase
dihydrolipoyltransacetylase; Validated.
Length = 633
Score = 39.6 bits (93), Expect = 2e-05
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 57
E + + L K GD V L ++ DKA M + + G++ +I V
Sbjct: 13 DEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKV 61
Score = 35.7 bits (83), Expect = 4e-04
Identities = 14/52 (26%), Positives = 20/52 (38%)
Query: 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
E + + L K GD V L ++ DKA M G + +I V
Sbjct: 116 DEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK 167
Score = 35.4 bits (82), Expect = 7e-04
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
E + + + K GD V L ++ DKA M G + +I V
Sbjct: 217 DEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK 268
>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component.
Length = 416
Score = 38.2 bits (89), Expect = 6e-05
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 13 IVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 54
+++W KEGD V LCE+Q+DKA + + +G +A+I
Sbjct: 15 LLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQIN 56
>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism].
Length = 140
Score = 37.4 bits (87), Expect = 7e-05
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55
GT+ K + GD V G L I+ K E +G++ +ILV
Sbjct: 79 GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILV 123
Score = 25.8 bits (57), Expect = 1.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEI 33
G + + L K GD V GD L I
Sbjct: 116 GVVKEILVKNGDPVEYGDPLAVI 138
>gnl|CDD|217214 pfam02749, QRPTase_N, Quinolinate phosphoribosyl transferase,
N-terminal domain. Quinolinate phosphoribosyl
transferase (QPRTase) or nicotinate-nucleotide
pyrophosphorylase EC:2.4.2.19 is involved in the de
novo synthesis of NAD in both prokaryotes and
eukaryotes. It catalyzes the reaction of quinolinic
acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in
the presence of Mg2+ to give rise to nicotinic acid
mononucleotide (NaMN), pyrophosphate and carbon
dioxide. The QA substrate is bound between the
C-terminal domain of one subunit, and the N-terminal
domain of the other. The N-terminal domain has an
alpha/beta hammerhead fold.
Length = 88
Score = 33.6 bits (78), Expect = 0.001
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
V+WL K+G+ V GDV+ EI+
Sbjct: 47 VEWLVKDGERVEAGDVILEIE 67
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity
(UPGMA) trees. Members of this set include two or three
copies of the lipoyl-binding domain. E. coli AceF is a
member of this model, while mitochondrial and some
other bacterial forms belong to a separate model
[Energy metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 33.7 bits (77), Expect = 0.002
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55
EG +++ L K GD V G L +++DKA M + GI+ +I V
Sbjct: 13 EGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKV 58
Score = 28.3 bits (63), Expect = 0.21
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55
+ T+++ L K GD V+ L +++DKA M G++ + V
Sbjct: 129 KVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKV 174
>gnl|CDD|238806 cd01572, QPRTase, Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase), also called
nicotinate-nucleotide pyrophosphorylase, is involved in
the de novo synthesis of NAD in both prokaryotes and
eukaryotes. It catalyses the reaction of quinolinic
acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP)
in the presence of Mg2+ to produce nicotinic acid
mononucleotide (NAMN), pyrophosphate and carbon
dioxide. QPRTase functions as a homodimer with two
active sites, each formed by the C-terminal region of
one subunit and the N-terminal region of the other.
Length = 268
Score = 33.2 bits (77), Expect = 0.003
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
V+WL K+GD V PG VL ++
Sbjct: 60 VEWLVKDGDRVEPGQVLATVE 80
>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated.
Length = 592
Score = 32.5 bits (75), Expect = 0.006
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 57
GT+VK KEGD V GD + ++ K + +G + +ILV E
Sbjct: 531 GTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKE 577
Score = 31.0 bits (71), Expect = 0.024
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQ 34
GT+ + L KEGD V PGDVL EI+
Sbjct: 568 GTVKEILVKEGDRVNPGDVLMEIE 591
>gnl|CDD|223235 COG0157, NadC, Nicotinate-nucleotide pyrophosphorylase [Coenzyme
metabolism].
Length = 280
Score = 32.2 bits (74), Expect = 0.008
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
++WL K+GD V PGDVL EI+
Sbjct: 66 IQWLVKDGDRVKPGDVLAEIE 86
>gnl|CDD|238802 cd01568, QPRTase_NadC, Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase), also called
nicotinate-nucleotide pyrophosphorylase, is involved in
the de novo synthesis of NAD in both prokaryotes and
eukaryotes. It catalyses the reaction of quinolinic
acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP)
in the presence of Mg2+ to produce nicotinic acid
mononucleotide (NAMN), pyrophosphate and carbon
dioxide. QPRTase functions as a homodimer with two
active sites, each formed by the C-terminal region of
one subunit and the N-terminal region of the other.
Length = 269
Score = 32.1 bits (74), Expect = 0.009
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
V+WL K+GD V G VL E++
Sbjct: 59 VEWLVKDGDRVEAGQVLLEVE 79
>gnl|CDD|180286 PRK05848, PRK05848, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 273
Score = 31.6 bits (72), Expect = 0.013
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVM 40
G + K+G+ GD+L EI+ D +++
Sbjct: 55 MTGIECVFTIKDGERFKKGDILMEIEGDFSML 86
>gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and
conversion].
Length = 1149
Score = 31.5 bits (72), Expect = 0.014
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
G +V+ K+GD V GDVL I+ K + +G + ++LV +
Sbjct: 1088 GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQ 1137
>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed.
Length = 1146
Score = 31.3 bits (72), Expect = 0.016
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFET----EEEGILAKILVPENTT 60
G++V L KEGD V GD L I+ M ET +G + ++LV
Sbjct: 1085 GSVVTVLVKEGDEVKAGDPLAVIE----AMKMETTITAPVDGTVKRVLVKAGDQ 1134
Score = 25.9 bits (58), Expect = 1.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEIQ 34
+GT+ + L K GD V GD+L E++
Sbjct: 1121 DGTVKRVLVKAGDQVEAGDLLVELE 1145
>gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional.
Length = 593
Score = 31.1 bits (71), Expect = 0.017
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETE----EEGILAKILVPE 57
G I K + EG VA GDVL ++ M ETE + G + I V E
Sbjct: 533 GNIFKVIVTEGQTVAEGDVLLILEA----MKMETEIRAAQAGTVRGIAVKE 579
Score = 28.0 bits (63), Expect = 0.24
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 11 GTIVKWLKKEGDAVAPGDVL 30
GT+ KEGDAVA GD L
Sbjct: 570 GTVRGIAVKEGDAVAVGDTL 589
>gnl|CDD|205711 pfam13533, Biotin_lipoyl_2, Biotin-lipoyl like.
Length = 50
Score = 29.0 bits (66), Expect = 0.031
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDK 37
G +V KEG +V GDVL + +++
Sbjct: 11 GRVVAVNVKEGQSVKKGDVLFTLDSEE 37
>gnl|CDD|235900 PRK06978, PRK06978, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 294
Score = 30.5 bits (69), Expect = 0.035
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQ 34
M ++ P++ V W +EGD + +CE++
Sbjct: 75 MRAVDPSIE----VTWRYREGDRMTADSTVCELE 104
>gnl|CDD|180811 PRK07051, PRK07051, hypothetical protein; Validated.
Length = 80
Score = 29.2 bits (66), Expect = 0.037
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 18 KKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55
+ GDAVA GDV+ I+ K E E G + + LV
Sbjct: 26 VEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLV 63
Score = 25.4 bits (56), Expect = 1.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQT 35
G +V++L ++G+ V G VL I+
Sbjct: 56 GRVVEFLVEDGEPVEAGQVLARIEE 80
>gnl|CDD|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type
II; This family contains two enzymes that play an
important role in NAD production by either allowing
quinolinic acid (QA) , quinolinate phosphoribosyl
transferase (QAPRTase), or nicotinic acid (NA),
nicotinate phosphoribosyltransferase (NAPRTase), to be
used in the synthesis of NAD. QAPRTase catalyses the
reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide
(NAMN), pyrophosphate and carbon dioxide, an important
step in the de novo synthesis of NAD. NAPRTase
catalyses a similar reaction leading to NAMN and
pyrophosphate, using nicotinic acid an PPRP as
substrates, used in the NAD salvage pathway.
Length = 281
Score = 29.5 bits (67), Expect = 0.060
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQ-TDKAVMSFET 44
G +V EG V PG+ L I+ + ++ E
Sbjct: 49 GPLVILAVPEGTVVEPGEPLLTIEGPARELLLLER 83
>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit
[Lipid metabolism].
Length = 645
Score = 29.6 bits (67), Expect = 0.066
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 57
GT+V KEG V+ GD+L ++ K + +G++AK+ V E
Sbjct: 584 GTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAE 630
Score = 25.3 bits (56), Expect = 1.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEI 33
+G + K EGD VA G VL E
Sbjct: 620 DGVVAKLAVAEGDQVAVGTVLVEF 643
>gnl|CDD|215974 pfam00529, HlyD, HlyD family secretion protein.
Length = 304
Score = 29.4 bits (66), Expect = 0.078
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEI 33
G +++ L KEGD V GDVL +
Sbjct: 11 GIVIRILVKEGDRVKAGDVLVRL 33
>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase. This enzyme plays a
role in gluconeogensis but not glycolysis [Energy
metabolism, Glycolysis/gluconeogenesis].
Length = 1143
Score = 29.4 bits (66), Expect = 0.078
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55
G I++ G AV GD L ++ K + + ++G + ++LV
Sbjct: 1083 GVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLV 1127
>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
Length = 586
Score = 29.0 bits (66), Expect = 0.11
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 14/46 (30%)
Query: 15 KW----LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 56
KW K GD V GD+L +Q E I KI+VP
Sbjct: 117 KWEFTPTVKVGDKVEAGDILGTVQ----------ETPSIEHKIMVP 152
>gnl|CDD|232814 TIGR00078, nadC, nicotinate-nucleotide pyrophosphorylase.
Synonym: quinolinate phosphoribosyltransferase
(decarboxylating) [Biosynthesis of cofactors,
prosthetic groups, and carriers, Pyridine nucleotides].
Length = 265
Score = 28.8 bits (65), Expect = 0.11
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
V+WL K+GD V PG+V+ E++
Sbjct: 56 VEWLVKDGDRVEPGEVVAEVE 76
>gnl|CDD|133457 cd06848, GCS_H, Glycine cleavage H-protein. Glycine cleavage
H-proteins are part of the glycine cleavage system
(GCS) found in bacteria, archea and the mitochondria of
eukaryotes. GCS is a multienzyme complex consisting of
4 different components (P-, H-, T- and L-proteins)
which catalyzes the oxidative cleavage of glycine. The
H-protein shuttles the methylamine group of glycine
from the P-protein (glycine dehydrogenase) to the
T-protein (aminomethyltransferase) via a lipoyl group,
attached to a completely conserved lysine residue.
Length = 96
Score = 27.5 bits (62), Expect = 0.20
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 11 GTIVK-WLKKEGDAVAPGDVLCEIQTDKAVMSF 42
G IV L + G V GD +++ KA
Sbjct: 29 GDIVFVELPEVGTEVKKGDPFGSVESVKAASDL 61
>gnl|CDD|181304 PRK08225, PRK08225, acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 70
Score = 27.1 bits (60), Expect = 0.22
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 9 TEGTIVKWLKKEGDAVAPGDVLCEIQ 34
GT+ K +EGD V GDVL EI+
Sbjct: 45 EAGTVKKINVQEGDFVNEGDVLLEIE 70
Score = 22.8 bits (49), Expect = 9.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 57
G + K + K GD V G + +++ K + EE G + KI V E
Sbjct: 10 GNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQE 56
>gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit. This
model describes the bacterial oxaloacetate decarboxylase
alpha subunit and its equivalents in archaea. The
oxaloacetate decarboxylase Na+ pump is the paradigm of
the family of Na+ transport decarboxylases that present
in bacteria and archaea. It a multi subunit enzyme
consisting of a peripheral alpha-subunit and integral
membrane subunits beta and gamma. The energy released by
the decarboxylation reaction of oxaloacetate is coupled
to Na+ ion pumping across the membrane [Transport and
binding proteins, Cations and iron carrying compounds,
Energy metabolism, Other].
Length = 582
Score = 28.2 bits (63), Expect = 0.23
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55
G+IVK EG VA G+VL ++ K + G + +ILV
Sbjct: 526 GSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILV 570
Score = 25.9 bits (57), Expect = 1.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 11 GTIVKWLKKEGDAVAPGDVL 30
GT+ + L K GDAV+ G VL
Sbjct: 563 GTVREILVKVGDAVSVGQVL 582
>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase. Members of this family are
ATP-dependent urea carboxylase, including characterized
members from Oleomonas sagaranensis (alpha class
Proteobacterium) and yeasts such as Saccharomyces
cerevisiae. The allophanate hydrolase domain of the yeast
enzyme is not included in this model and is represented
by an adjacent gene in Oleomonas sagaranensis. The fusion
of urea carboxylase and allophanate hydrolase is
designated urea amidolyase. The enzyme from Oleomonas
sagaranensis was shown to be highly active on acetamide
and formamide as well as urea [Central intermediary
metabolism, Nitrogen metabolism].
Length = 1201
Score = 27.7 bits (62), Expect = 0.28
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55
G K L + GD V G L ++ K M G + KIL
Sbjct: 1141 GNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILC 1185
Score = 25.8 bits (57), Expect = 1.6
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQ 34
MP +P G + K L + GD V GD++ ++
Sbjct: 1170 MPVSAPV--AGKVTKILCQPGDMVDAGDIVAVLE 1201
>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 578
Score = 27.8 bits (62), Expect = 0.29
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 10/40 (25%)
Query: 19 KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN 58
KEGD V GD++ + E I KILVP N
Sbjct: 122 KEGDKVEGGDIIGVVP----------ETSLIEHKILVPPN 151
>gnl|CDD|238554 cd01134, V_A-ATPase_A, V/A-type ATP synthase catalytic subunit A.
These ATPases couple ATP hydrolysis to the build up of
a H+ gradient, but V-type ATPases do not catalyze the
reverse reaction. The Vacuolar (V-type) ATPase is
found in the membranes of vacuoles, the golgi apparatus
and in other coated vesicles in eukaryotes. Archaea
have a protein which is similar in sequence to
V-ATPases, but functions like an F-ATPase (called
A-ATPase). A similar protein is also found in a few
bacteria.
Length = 369
Score = 27.6 bits (62), Expect = 0.34
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 14/46 (30%)
Query: 15 KW----LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 56
KW L K GD V GD+L + E I KI+VP
Sbjct: 48 KWDFKPLVKVGDHVTGGDILGTVP----------ENSLIEHKIMVP 83
>gnl|CDD|233228 TIGR00998, 8a0101, efflux pump membrane protein (multidrug
resistance protein A). [Transport and binding
proteins, Other].
Length = 334
Score = 26.7 bits (59), Expect = 0.73
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEE 46
G++++ + D V GDVL + A ++ E
Sbjct: 51 GSVIEVNVDDTDYVKQGDVLVRLDPTNAELALAKAE 86
>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy
production and conversion].
Length = 588
Score = 26.1 bits (58), Expect = 1.0
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 15/54 (27%)
Query: 15 KW----LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64
KW K+GD V PGDVL +Q ET ++ ++ GKV
Sbjct: 115 KWDFVPAVKKGDTVYPGDVLGTVQ--------ETS---LITHRIMVPPGVSGKV 157
>gnl|CDD|222128 pfam13437, HlyD_3, HlyD family secretion protein. This is a
family of largely bacterial haemolysin translocator
HlyD proteins.
Length = 102
Score = 25.8 bits (57), Expect = 1.1
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVM 40
G + + +EG VA GD L EI +
Sbjct: 8 GVVAELDVEEGQVVAAGDPLAEIVDPDTLW 37
>gnl|CDD|223914 COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis,
outer membrane].
Length = 372
Score = 26.2 bits (57), Expect = 1.2
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKI 53
G + + L KEGD V G +L + + + + E LA+
Sbjct: 73 VAGIVAEILVKEGDRVKKGQLLARLDPSAVLQAALDQAEAQLARA 117
>gnl|CDD|199870 cd06250, M14_PaAOTO_like, Peptidase M14 Succinylglutamate
desuccinylase (ASTE)/aspartoacylase (ASPA)-like
subfamily; subgroup includes Pseudomonas aeruginosa
AotO. An uncharacterized subgroup of the
Succinylglutamate desuccinylase (ASTE)/aspartoacylase
(ASPA) subfamily which is part of the the M14 family of
metallocarboxypeptidases. This subgroup includes
Pseudomonas aeruginosa AotO and related proteins. ASTE
catalyzes the fifth and last step in arginine catabolism
by the arginine succinyltransferase pathway, and
aspartoacylase (ASPA, also known as aminoacylase 2, and
ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid
(NAA) into aspartate and acetate. NAA is abundant in the
brain, and hydrolysis of NAA by ASPA may help maintain
white matter. ASPA is an NAA scavenger in other tissues.
Mutations in the gene encoding ASPA cause Canavan
disease (CD), a fatal progressive neurodegenerative
disorder involving dysmyelination and spongiform
degeneration of white matter in children. This enzyme
binds zinc which is necessary for activity. Measurement
of elevated NAA levels in urine is used in the diagnosis
of CD. The gene encoding P. aeruginosa AotO was
characterized as part of an operon encoding an arginine
and ornithine transport system, however it is not
essential for arginine and ornithine uptake.
Length = 359
Score = 26.1 bits (58), Expect = 1.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEI 33
G +V + GD V GD+L EI
Sbjct: 296 AGGLVVYRAAPGDWVEAGDLLAEI 319
>gnl|CDD|181612 PRK09016, PRK09016, quinolinate phosphoribosyltransferase;
Validated.
Length = 296
Score = 25.4 bits (56), Expect = 2.1
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
++W +GD + L E+
Sbjct: 87 IEWHVDDGDVITANQTLFELT 107
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 25.2 bits (55), Expect = 2.2
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 19 KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK 63
K GD V G V+C I+ K + E ++ G + +IL DGK
Sbjct: 221 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILA----EDGK 261
>gnl|CDD|181221 PRK08072, PRK08072, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 277
Score = 25.4 bits (56), Expect = 2.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
V+ KK+GD V G+++ +Q
Sbjct: 66 VELHKKDGDLVKKGEIIATVQ 86
>gnl|CDD|221723 pfam12700, HlyD_2, HlyD family secretion protein. This family is
related to pfam00529.
Length = 328
Score = 25.1 bits (55), Expect = 2.4
Identities = 9/45 (20%), Positives = 14/45 (31%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 54
+K+ KEG+ V G VL I + +
Sbjct: 28 VSGYIKYYVKEGEKVKKGQVLATIDSSGLDQQLLEALAALDQAEA 72
>gnl|CDD|180550 PRK06382, PRK06382, threonine dehydratase; Provisional.
Length = 406
Score = 25.2 bits (55), Expect = 2.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 48 GILAKILVPENTTDGKV 64
GI AKI++PE T KV
Sbjct: 96 GIDAKIVMPEYTIPQKV 112
>gnl|CDD|180276 PRK05820, deoA, thymidine phosphorylase; Reviewed.
Length = 440
Score = 24.4 bits (54), Expect = 4.1
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQTDKA 38
+ + GD V G+ L + D
Sbjct: 383 LTLHARLGDRVDAGEPLATLHADDE 407
>gnl|CDD|214925 smart00941, PYNP_C, Pyrimidine nucleoside phosphorylase
C-terminal domain. This domain is found at the
C-terminal end of the large alpha/beta domain making up
various pyrimidine nucleoside phosphorylases. It has
slightly different conformations in different members
of this family. For example, in pyrimidine nucleoside
phosphorylase (PYNP) there is an added three-stranded
anti-parallel beta sheet as compared to other members
of the family, such as E. coli thymidine phosphorylase
(TP). The domain contains an alpha/ beta hammerhead
fold and residues in this domain seem to be important
in formation of the homodimer.
Length = 75
Score = 24.0 bits (53), Expect = 4.2
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQTDK 37
+ KK GD V G+ L I +
Sbjct: 34 IVLHKKLGDRVKKGEPLATIHAND 57
>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 153
Score = 24.4 bits (53), Expect = 4.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEI 33
P +G + K L KEGD V G L E+
Sbjct: 125 PAPKDGVVKKILVKEGDTVDTGQPLIEL 152
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 24.4 bits (53), Expect = 4.9
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 7 TMTEGTIVKWLKKEGDAVAPGDVL 30
TM G+I ++KKEGD V GD L
Sbjct: 560 TMV-GSI-TFVKKEGDHVKKGDEL 581
>gnl|CDD|223583 COG0509, GcvH, Glycine cleavage system H protein
(lipoate-binding) [Amino acid transport and
metabolism].
Length = 131
Score = 23.8 bits (52), Expect = 6.0
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 17 LKKEGDAVAPGDVLCEIQTDKAVMSF 42
L + G V G+ L +++ KA
Sbjct: 46 LPEVGAEVKAGESLAVVESVKAASDV 71
>gnl|CDD|233547 TIGR01730, RND_mfp, RND family efflux transporter, MFP subunit.
This model represents the MFP (membrane fusion protein)
component of the RND family of transporters. RND refers
to Resistance, Nodulation, and cell Division. It is, in
part, a subfamily of pfam00529 (Pfam release 7.5) but
hits substantial numbers of proteins missed by that
model. The related HlyD secretion protein, for which
pfam00529 is named, is outside the scope of this model.
Attributed functions imply outward transport. These
functions include nodulation, acriflavin resistance,
heavy metal efflux, and multidrug resistance proteins.
Most members of this family are found in Gram-negative
bacteria. The proposed function of MFP proteins is to
bring the inner and outer membranes together and enable
transport to the outside of the outer membrane. Note,
however, that a few members of this family are found in
Gram-positive bacteria, where there is no outer
membrane [Transport and binding proteins, Unknown
substrate].
Length = 322
Score = 23.8 bits (52), Expect = 8.1
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKA 38
G I K +EG V G VL + D
Sbjct: 35 GKITKISVREGQKVKKGQVLARLDDDDY 62
>gnl|CDD|178318 PLN02716, PLN02716, nicotinate-nucleotide diphosphorylase
(carboxylating).
Length = 308
Score = 23.5 bits (51), Expect = 8.5
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 14 VKWLKKEGDAVAPGDVLCEI 33
V+W +GD V G ++
Sbjct: 80 VEWAAIDGDFVHKGLKFGKV 99
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.130 0.366
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,182,738
Number of extensions: 222381
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 96
Length of query: 64
Length of database: 10,937,602
Length adjustment: 35
Effective length of query: 29
Effective length of database: 9,385,212
Effective search space: 272171148
Effective search space used: 272171148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.0 bits)