RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10440
(64 letters)
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate
dehydrogenase complex; pyruvate dehydrogenase kinase 3,
lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo
sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C*
2q8i_B* 1fyc_A
Length = 128
Score = 112 bits (281), Expect = 2e-34
Identities = 37/64 (57%), Positives = 49/64 (76%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +EEG LAKILVPE T
Sbjct: 32 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTR 91
Query: 61 DGKV 64
D +
Sbjct: 92 DVPL 95
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl
domain, 2-oxoacid dehydrogenase, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 110 bits (276), Expect = 7e-34
Identities = 40/64 (62%), Positives = 53/64 (82%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ + ++GILAKI+V E +
Sbjct: 12 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 71
Query: 61 DGKV 64
+ ++
Sbjct: 72 NIRL 75
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate dehydrogenase...; lipoyl domain, lipoic acid,
2-oxoacid dehydrogenase; NMR {Homo sapiens}
Length = 108
Score = 108 bits (272), Expect = 3e-33
Identities = 35/64 (54%), Positives = 46/64 (71%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+PSLSPTM GTI +W KKEGD + GD++ E++TDKA + FE+ EE +AKILV E T
Sbjct: 12 LPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTR 71
Query: 61 DGKV 64
D +
Sbjct: 72 DVPI 75
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 108 bits (272), Expect = 8e-32
Identities = 40/64 (62%), Positives = 53/64 (82%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ + ++GILAKI+V E +
Sbjct: 8 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 67
Query: 61 DGKV 64
+ ++
Sbjct: 68 NIRL 71
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate
dehydrogenase complex,...; pyruvate dehydrogenase
kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A
{Homo sapiens} PDB: 3crl_C*
Length = 87
Score = 97.5 bits (243), Expect = 4e-29
Identities = 36/64 (56%), Positives = 48/64 (75%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TD A + FE +EEG LAKILVPE T
Sbjct: 10 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTR 69
Query: 61 DGKV 64
D +
Sbjct: 70 DVPL 73
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate dehydrogenase...; oxidoreductase, multienzyme
complex; HET: TPW; 2.35A {Bacillus stearothermophilus}
PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 68.8 bits (169), Expect = 5e-16
Identities = 28/60 (46%), Positives = 37/60 (61%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+P + + EG IVKW K GD V DVLCE+Q DKAV+ + +G + +ILVPE T
Sbjct: 7 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 66
Score = 29.9 bits (68), Expect = 0.035
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKA 38
G +++ L EG G L +
Sbjct: 54 GKVLEILVPEGTVATVGQTLITLDAPGY 81
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase,
lipoyl domain, complex, glycolysis; NMR {Escherichia
coli} SCOP: b.84.1.1
Length = 80
Score = 59.2 bits (144), Expect = 4e-14
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+P L ++ + T+ W KK GDAV +VL EI+TDK V+ +GIL +L E TT
Sbjct: 7 VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT 66
Score = 23.0 bits (50), Expect = 7.0
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQ 34
G + L+ EG V +L ++
Sbjct: 54 GILDAVLEDEGTTVTSRQILGRLR 77
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of
2-oxoglutarate dehydrogenase...; glycolysis,
acyltransferase, lipoyl; NMR {Azotobacter vinelandii}
SCOP: b.84.1.1 PDB: 1ghk_A
Length = 79
Score = 59.2 bits (144), Expect = 4e-14
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
P+ ++ +GT+ W KK G+AV +++ +I+TDK VM E +G++A+I+ E T
Sbjct: 6 APTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT 65
Score = 23.0 bits (50), Expect = 5.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQT 35
+G I + +K EGD V G++L ++
Sbjct: 48 LAEADGVIAEIVKNEGDTVLSGELLGKLTE 77
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma
acidophilum}
Length = 77
Score = 58.0 bits (141), Expect = 1e-13
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+P + +TEG IV+W KEGD V L E+ TDK + + G + KIL E
Sbjct: 6 LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV 65
Score = 26.8 bits (60), Expect = 0.20
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQT 35
P+ G IVK L +EG V G L +I T
Sbjct: 48 PSPVRGKIVKILYREGQVVPVGSTLLQIDT 77
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase;
lipoyl acid bearing, human BCKD, experimental DATA,
average structure, transferase; NMR {Homo sapiens}
SCOP: b.84.1.1 PDB: 1k8o_A
Length = 93
Score = 57.3 bits (139), Expect = 3e-13
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+ + + E T+ +W KEGD V+ D +CE+Q+DKA ++ + +G++ K+ +
Sbjct: 9 LSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI 68
Score = 28.8 bits (65), Expect = 0.049
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEE 47
+ +G I K D G L +I+T+
Sbjct: 51 TSRYDGVIKKLYYNLDDIAYVGKPLVDIETEALKDLEHHHHH 92
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA,
biotinylation, alternative splicing, ATP-binding,
biotin, fatty acid biosynthesis, ligase; NMR {Homo
sapiens}
Length = 84
Score = 41.6 bits (98), Expect = 5e-07
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 56
G + ++ ++G V G E++ K +M+ +E G + I P
Sbjct: 14 GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRP 59
Score = 32.3 bits (74), Expect = 0.002
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 13 IVKWLKKEGDAVAPGDVLCEIQTD 36
VK++K+ G + G V+ ++ D
Sbjct: 52 RVKYIKRPGAVLEAGCVVARLELD 75
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme,
transcarboxylase, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 40.9 bits (96), Expect = 1e-06
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 56
G + ++ ++G V G E++ K +M+ +E G + I P
Sbjct: 26 GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRP 71
Score = 31.6 bits (72), Expect = 0.003
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTD 36
M E VK++K+ G + G V+ ++ D
Sbjct: 55 MTLNVQ---ERGRVKYIKRPGAVLEAGCVVARLELD 87
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.50A {Thermotoga
maritima} SCOP: c.1.17.1 d.41.2.1
Length = 285
Score = 35.2 bits (82), Expect = 4e-04
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
K+ ++G+ + V+ EI+
Sbjct: 73 SKFNVEDGEYLEGTGVIGEIE 93
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 35.4 bits (82), Expect = 4e-04
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 57
G K + GD V GD + I+ K M + G + KIL
Sbjct: 1176 GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKN 1222
Score = 30.0 bits (68), Expect = 0.034
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEI 33
G + K L K GD V GD++ I
Sbjct: 1212 SGKVYKILHKNGDMVEAGDLVAVI 1235
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase,
transferase; 2.62A {Francisella tularensis subsp}
Length = 287
Score = 34.8 bits (81), Expect = 6e-04
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
+ WL + V + E++
Sbjct: 77 ITWLYSDAQKVPANARIFELK 97
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel,
pyridin dicarboxylate, 5-phospho-alpha-D-ribose
1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Length = 320
Score = 34.5 bits (80), Expect = 7e-04
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
++W ++GD + P LC +
Sbjct: 110 IEWHVQDGDTLTPNQTLCTLT 130
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate
phosphoribosyltransferase, quinolinic acid, HELI
pylori, transferase; HET: NTM; 2.30A {Helicobacter
pylori} PDB: 2b7p_A* 2b7q_A*
Length = 273
Score = 34.3 bits (80), Expect = 7e-04
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
K+ + P D L EI+
Sbjct: 60 CVQTIKDKERFKPKDALMEIR 80
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI,
UW, emerald biostructures, ALS collaborative
crystallography; 2.05A {Ehrlichia chaffeensis}
Length = 300
Score = 34.4 bits (80), Expect = 7e-04
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
+ KK+GD L +
Sbjct: 86 YEIHKKDGDITGKNSTLVSGE 106
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 34.6 bits (80), Expect = 7e-04
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
G ++ G VA G LC + K + EG + K+ V ++ T
Sbjct: 658 GKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMT 707
Score = 31.5 bits (72), Expect = 0.009
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQ 34
GT+ K + + D++ EI+
Sbjct: 695 GTVRKVHVTKDMTLEGDDLILEIE 718
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism,
transferase, polymorphism, glycosyltransferase,
pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo
sapiens} PDB: 3lar_A
Length = 299
Score = 34.1 bits (79), Expect = 0.001
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
V W EG + P + E++
Sbjct: 73 VSWFLPEGSKLVPVARVAEVR 93
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD
biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium}
SCOP: c.1.17.1 d.41.2.1
Length = 296
Score = 34.1 bits (79), Expect = 0.001
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
+ W +GDA+ + E+Q
Sbjct: 87 LTWHVDDGDAIHANQTVFELQ 107
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures,
ssgcid, niaid, SBRI, UWPPG, glycosyltransferase,
transferase, structural genomics; 2.25A {Burkholderia
pseudomallei}
Length = 298
Score = 34.0 bits (79), Expect = 0.001
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
V W +EGD ++ +CE++
Sbjct: 88 VDWRHREGDRMSADSTVCELR 108
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural
genomics, NPPSFA, national project O structural and
functional analyses; 1.90A {Thermus thermophilus}
Length = 286
Score = 34.0 bits (79), Expect = 0.001
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
L EG VA G + ++
Sbjct: 74 FTPLVAEGARVAEGTEVARVR 94
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de
novo NAD biosynthesis, PRPP, phosphoribos transferase;
2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1
d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Length = 284
Score = 32.8 bits (76), Expect = 0.003
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
V ++G V PG+ L ++
Sbjct: 73 VLDRVEDGARVPPGEALMTLE 93
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 31.9 bits (73), Expect = 0.006
Identities = 8/50 (16%), Positives = 20/50 (40%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
G++ + G+ V L + K + + +G++ ++ V T
Sbjct: 1086 GSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDT 1135
Score = 28.0 bits (63), Expect = 0.16
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQ 34
G I + GD +A GD+L EI+
Sbjct: 1123 GVIKQVTVNNGDTIATGDLLIEIE 1146
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 31.9 bits (73), Expect = 0.006
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
G I + G AV GDVL I+ K + E++G +A++LV
Sbjct: 1104 GVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQ 1153
Score = 26.1 bits (58), Expect = 0.64
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEI 33
GTI + L K GD + D+L
Sbjct: 1141 GTIAEVLVKAGDQIDAKDLLAVY 1163
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate dehydrogenase...; misfolded dimer,
acyltransferase, glycolysis; NMR {Escherichia coli}
Length = 85
Score = 30.4 bits (69), Expect = 0.009
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55
+ + + K GD VA L ++ DKA M G++ ++ V
Sbjct: 11 VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKV 55
Score = 24.6 bits (54), Expect = 1.5
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEE 47
P G + + GD V G ++ + + A + ++
Sbjct: 43 PAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGAAPAAAPAKQ 84
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid
biosynthesis, hamme structure, selenomethionine,
ligase, transferase; HET: BTN; 1.80A {Escherichia coli}
SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Length = 80
Score = 29.5 bits (67), Expect = 0.017
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 19 KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55
+ G V GD LC ++ K + E ++ G + ILV
Sbjct: 28 EVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILV 64
>1z6h_A Biotin/lipoyl attachment protein; solution structure,
biosynthetic protein; HET: BTI; NMR {Bacillus subtilis}
PDB: 1z7t_A 2b8f_A 2b8g_A*
Length = 72
Score = 29.5 bits (67), Expect = 0.020
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDK 37
G + + KKEGD V GDVL E+
Sbjct: 45 GIVKEVKKKEGDFVNEGDVLLELSNST 71
Score = 28.3 bits (64), Expect = 0.043
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 57
G + K K GD + G + +++ K + + GI+ ++ E
Sbjct: 8 GNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKE 54
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 29.6 bits (67), Expect = 0.037
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 4 LSPTMTEGTIVKWLKKEGDAVAPGDVLC 31
L P M G IVK + G V G LC
Sbjct: 616 LCP-MP-GLIVKVDVEVGQEVQEGQALC 641
Score = 26.1 bits (58), Expect = 0.63
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQ 34
G + K G+++A DV+ E +
Sbjct: 658 GVVAKINASAGNSLAVDDVIMEFE 681
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 29.6 bits (67), Expect = 0.042
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTD 36
G + GD V +L I +
Sbjct: 40 GQLKTLSVAIGDKVKKDQLLGVIDPE 65
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin
carboxylase, carboxyltransferase, BT domain, BCCP DOM
ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Length = 675
Score = 29.2 bits (66), Expect = 0.059
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 4 LSPTMTEGTIVKWLKKEGDAVAPGDVLC 31
+P M G+IV+ L + G V G L
Sbjct: 606 SAP-MN-GSIVRVLVEPGQTVEAGATLV 631
Score = 28.0 bits (63), Expect = 0.16
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKA 38
G + EG+ V G L E+ ++A
Sbjct: 648 GVVKALYCSEGELVEEGTPLVELDENQA 675
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain,
dihydrolipoyl dehydrogenase, multienzyme complex,
post-translational modification; NMR {Neisseria
meningitidis} SCOP: b.84.1.1
Length = 81
Score = 28.4 bits (64), Expect = 0.060
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 13 IVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55
I+ GD +A D L ++TDKA M E G++ ++ V
Sbjct: 18 IIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKV 60
Score = 24.9 bits (55), Expect = 1.3
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKA 38
P G + + K GD ++ G ++ ++ +
Sbjct: 48 PAEVAGVVKEVKVKVGDKISEGGLIVVVEAEGT 80
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB
(CZCB-LIKE); structural genomics, PSI-2, protein
structure initiative; 2.80A {Cupriavidus metallidurans}
Length = 359
Score = 28.9 bits (65), Expect = 0.064
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEI 33
G IV K+ GD V GDVL I
Sbjct: 65 AGRIVSLNKQLGDEVKAGDVLFTI 88
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 29.0 bits (65), Expect = 0.070
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTD 36
G I K K G V GD+L EI +
Sbjct: 41 GKITKLYVKLGQQVKKGDLLAEIDST 66
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.081
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 22 DAVAPGDVLCEIQTDKAVMSFETEE-EGILAKIL 54
D ++ I D M+ +E + +L K L
Sbjct: 279 DFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYL 311
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate
dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Length = 80
Score = 27.6 bits (62), Expect = 0.094
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55
E + + + K GD VA L ++ DKA M G++ ++ V
Sbjct: 14 EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKV 59
Score = 23.7 bits (52), Expect = 2.7
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKA 38
P G + + GD V G ++ + + A
Sbjct: 47 PAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGA 79
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Shewanella
amazonensis} PDB: 3lwu_A*
Length = 368
Score = 28.8 bits (63), Expect = 0.095
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 13 IVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILA 51
+V++L K G + D L + + E +
Sbjct: 300 MVEYLGKVGVPMKATDPLVNL-LRLDLYGTGEELTVLRL 337
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate
dehydrogenase complex; glycolysis, acyltransferase,
lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1
PDB: 1iyv_A
Length = 79
Score = 27.6 bits (62), Expect = 0.11
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 13 IVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55
+++ L K GD + L +++ KA M + + G++ + V
Sbjct: 15 VIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSV 57
Score = 23.7 bits (52), Expect = 2.9
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKA 38
P+ G + K GD + GD + E++
Sbjct: 45 PSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAG 77
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet,
hammerhead, biocytin, transferase; NMR
{Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1
PDB: 1dd2_A 1o78_A
Length = 77
Score = 27.6 bits (62), Expect = 0.11
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEI 33
G + K L KE DAV G L +I
Sbjct: 54 GKVEKVLVKERDAVQGGQGLIKI 76
Score = 26.8 bits (60), Expect = 0.24
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 11 GTIVKWLKKEGDAVAPGDVLC 31
GT+ K L KEGD V G +
Sbjct: 17 GTVSKILVKEGDTVKAGQTVL 37
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6,
mechanism, cytoplasm, glycosyltransferase, nucleus;
1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A*
3c2v_A* 3c2r_A*
Length = 294
Score = 28.3 bits (64), Expect = 0.11
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
Query: 14 VKWLKKEGDAVAPGD------VLCEIQ 34
V+WL KEG + P V+ +I
Sbjct: 69 VEWLFKEGSFLEPSKNDSGKIVVAKIT 95
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 27.4 bits (61), Expect = 0.24
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 16/55 (29%)
Query: 14 VKW----LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64
KW + K GD V G VL + E G KILVP + G+V
Sbjct: 115 KKWAWTPMVKPGDEVRGGMVLGTVP-----------EFGFTHKILVPPD-VRGRV 157
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring
enzyme, biotin, actyl COA carboxylase, fatty acid
synthesis, structural genomics; NMR {Homo sapiens}
Length = 99
Score = 26.6 bits (59), Expect = 0.27
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKA 38
GT+ K +EG L E + +++
Sbjct: 60 GTVKKVFYREGAQANRHTPLVEFEEEES 87
Score = 25.1 bits (55), Expect = 1.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 11 GTIVKWLKKEGDAVAPGDVLC 31
GTI K K GD V GD L
Sbjct: 23 GTIEKVFVKAGDKVKAGDSLM 43
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase,
biotin, ATP-binding, disease mutation,
nucleotide-binding, mitochondrion; HET: PG4; 1.50A
{Homo sapiens}
Length = 94
Score = 26.6 bits (59), Expect = 0.29
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQ 34
GT+ + GD V GD+L E++
Sbjct: 71 GTVKSVHCQAGDTVGEGDLLVELE 94
Score = 26.2 bits (58), Expect = 0.41
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 57
G +V K GDAVA G +C I+ K S + G + +
Sbjct: 34 GVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQA 80
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics,
glycosyltransferase, transferase; HET: MSE THM; 1.94A
{Staphylococcus aureus}
Length = 436
Score = 27.3 bits (61), Expect = 0.32
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQTDKA 38
+ KK GD V G+ L I +++
Sbjct: 381 IVLNKKIGDKVEEGESLLTIHSNRQ 405
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain
movement, transferase; HET: MES; 2.10A {Geobacillus
stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Length = 433
Score = 26.9 bits (60), Expect = 0.35
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQTDKA 38
+ KK GD V G+ L I +++
Sbjct: 378 IVLHKKIGDRVQKGEALATIHSNRP 402
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Length = 116
Score = 26.8 bits (60), Expect = 0.36
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFE 43
G IV L K GD V G L I+ D+A F
Sbjct: 9 SGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFN 42
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase,
chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens}
SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A
2j0f_A
Length = 474
Score = 26.6 bits (59), Expect = 0.42
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQTDK 37
+ L G + G + D
Sbjct: 413 AELLVDVGQRLRRGTPWLRVHRDG 436
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase;
pyrimidine-nucleoside phosphorylase, structural
genomics; 1.80A {Thermus thermophilus}
Length = 423
Score = 26.5 bits (59), Expect = 0.44
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQTDKA 38
V LKK GD V G+ L + +
Sbjct: 370 VYLLKKPGDRVERGEALALVYHRRR 394
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP,
structural genomics, NPPSFA; 1.55A {Pyrococcus
horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Length = 74
Score = 26.0 bits (58), Expect = 0.45
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 57
G +++ L + GD V G L ++ K + +G++ +ILV E
Sbjct: 14 GKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKE 60
Score = 25.7 bits (57), Expect = 0.48
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEI 33
G + + L KEG+AV G L E+
Sbjct: 51 GVVKRILVKEGEAVDTGQPLIEL 73
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A
{Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB:
1azy_A 1tpt_A 1otp_A
Length = 440
Score = 26.5 bits (59), Expect = 0.57
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQTDK 37
+ + GD V L I
Sbjct: 383 FTDMARLGDQVDGQRPLAVIHAKD 406
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 25.9 bits (57), Expect = 0.96
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 15/55 (27%)
Query: 14 VKW----LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64
KW K GD V GD++ E+ E I+ KI+VP G++
Sbjct: 116 KKWHFIPKAKVGDKVVGGDIIGEVP----------ETSIIVHKIMVPPGIE-GEI 159
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural
genomics, joint center for structural genomics; HET:
MSE; 2.20A {Methanococcus maripaludis}
Length = 169
Score = 25.5 bits (55), Expect = 1.3
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA-VMSFETEEEGILAKILVPENTTD 61
EG V + G V G L +++ K + + G + I + E ++
Sbjct: 108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTV--IFMNEIPSE 158
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain,
beta barrel, transport prote; 2.71A {Escherichia coli}
Length = 277
Score = 25.3 bits (56), Expect = 1.5
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEI 33
G I+K KEG + G L +I
Sbjct: 30 SGIILKRNFKEGSDIEAGVSLYQI 53
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 24.7 bits (54), Expect = 2.0
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 17 LKKEGDAVAPGDVLCEIQTD 36
L K+GD V G L D
Sbjct: 1312 LVKDGDYVEAGQPLTRGAID 1331
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A
{Thermotoga maritima}
Length = 193
Score = 24.9 bits (54), Expect = 2.2
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 19 KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55
G V GD++ E A S + + KI+V
Sbjct: 26 NNGKDVNKGDLIAEEPPIYARRSGVIVDVKNVRKIVV 62
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
1i6v_D* 2gho_D
Length = 1265
Score = 24.6 bits (54), Expect = 2.3
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 17 LKKEGDAVAPGDVLCE 32
L K+GD V G L
Sbjct: 1053 LVKDGDYVEAGQPLTR 1068
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel,
membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP:
f.46.1.1 PDB: 2v4d_A 1t5e_A
Length = 369
Score = 24.5 bits (54), Expect = 2.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEI 33
G I+K L KEG V G L +I
Sbjct: 51 NGIILKRLFKEGSDVKAGQQLYQI 74
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 24.6 bits (54), Expect = 2.8
Identities = 4/13 (30%), Positives = 9/13 (69%)
Query: 9 TEGTIVKWLKKEG 21
T+ I++ +K+ G
Sbjct: 957 TQSEIIQMMKERG 969
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo
domain, mRNA turnover, RRN processing, RNA binding, DNA
binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Length = 1155
Score = 24.5 bits (52), Expect = 3.1
Identities = 8/52 (15%), Positives = 18/52 (34%)
Query: 13 IVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64
+ WL + + + T ++ + E+E ++ E KV
Sbjct: 995 VADWLSEARKPFVVVSLESDSLTKASMAAVESEIIKYVSLPDSSEQKKLAKV 1046
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_D*
Length = 1407
Score = 23.4 bits (51), Expect = 7.1
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 17 LKKEGDAVAPGDVLCEI 33
K +G+ VA G+ +
Sbjct: 1004 AKGDGEQVAGGETVANW 1020
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid
motif, transferase; 2.30A {Escherichia coli}
Length = 190
Score = 23.1 bits (50), Expect = 8.3
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 8/41 (19%)
Query: 17 LKKEGDAVAPGDVLCE--------IQTDKAVMSFETEEEGI 49
K +G+ VA G+ + I + F +G
Sbjct: 65 AKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQ 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.130 0.366
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 961,793
Number of extensions: 43328
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 84
Length of query: 64
Length of database: 6,701,793
Length adjustment: 35
Effective length of query: 29
Effective length of database: 5,724,558
Effective search space: 166012182
Effective search space used: 166012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.6 bits)