RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10440
(64 letters)
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Escherichia coli [TaxId: 562]}
Length = 80
Score = 66.7 bits (163), Expect = 2e-17
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+P L ++ + T+ W KK GDAV +VL EI+TDK V+ +GIL +L E TT
Sbjct: 7 VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT 66
Score = 27.8 bits (62), Expect = 0.033
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEI 33
P +G + L+ EG V +L +
Sbjct: 49 PASADGILDAVLEDEGTTVTSRQILGRL 76
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide
acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 66.8 bits (163), Expect = 3e-17
Identities = 37/64 (57%), Positives = 49/64 (76%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +EEG LAKILVPE T
Sbjct: 10 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTR 69
Query: 61 DGKV 64
D +
Sbjct: 70 DVPL 73
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 80
Score = 63.6 bits (155), Expect = 3e-16
Identities = 28/60 (46%), Positives = 37/60 (61%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+P + + EG IVKW K GD V DVLCE+Q DKAV+ + +G + +ILVPE T
Sbjct: 6 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 65
Score = 29.3 bits (66), Expect = 0.008
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQTD 36
P+ +G +++ L EG G L +
Sbjct: 48 PSPVKGKVLEILVPEGTVATVGQTLITLDAP 78
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial
branched-chain alpha-ketoacid dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 62.9 bits (153), Expect = 6e-16
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+ + + E T+ +W KEGD V+ D +CE+Q+DKA ++ + +G++ K+ +
Sbjct: 9 LSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI 68
Score = 29.0 bits (65), Expect = 0.012
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA 38
+G I K D G L +I+T+
Sbjct: 55 DGVIKKLYYNLDDIAYVGKPLVDIETEAL 83
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Azotobacter vinelandii [TaxId:
354]}
Length = 79
Score = 61.4 bits (149), Expect = 2e-15
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
P+ ++ +GT+ W KK G+AV +++ +I+TDK VM E +G++A+I+ E T
Sbjct: 6 APTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT 65
Score = 27.5 bits (61), Expect = 0.041
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQTD 36
+G I + +K EGD V G++L ++
Sbjct: 48 LAEADGVIAEIVKNEGDTVLSGELLGKLTEG 78
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Neisseria meningitidis [TaxId: 487]}
Length = 81
Score = 52.9 bits (127), Expect = 6e-12
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+P + I+ GD +A D L ++TDKA M E G++ ++ V
Sbjct: 7 VPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK 65
Score = 25.1 bits (55), Expect = 0.35
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTD 36
G + + K GD ++ G ++ ++ +
Sbjct: 53 GVVKEVKVKVGDKISEGGLIVVVEAE 78
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Escherichia coli [TaxId: 562]}
Length = 80
Score = 49.8 bits (119), Expect = 7e-11
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+P + E + + + K GD VA L ++ DKA M G++ ++ V
Sbjct: 7 VPDIG--GDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK 64
Score = 25.9 bits (57), Expect = 0.20
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKA 38
G + + GD V G ++ + + A
Sbjct: 52 GVVKELKVNVGDKVKTGSLIMIFEVEGA 79
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Length = 79
Score = 48.7 bits (116), Expect = 2e-10
Identities = 11/52 (21%), Positives = 24/52 (46%)
Query: 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
+G +++ L K GD + L +++ KA M + + G++ + V
Sbjct: 11 GDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK 62
Score = 24.8 bits (54), Expect = 0.42
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKA 38
P+ G + K GD + GD + E++
Sbjct: 45 PSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAG 77
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of
transcarboxylase (TC 1.3S) {Propionibacterium
freudenreichii, subsp. shermanii [TaxId: 1744]}
Length = 77
Score = 46.8 bits (111), Expect = 1e-09
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
GT+ K L KEGD V G + ++ K +G + K+LV E
Sbjct: 17 GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA 66
Score = 27.9 bits (62), Expect = 0.027
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEI 33
+G + K L KE DAV G L +I
Sbjct: 53 DGKVEKVLVKERDAVQGGQGLIKI 76
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 237
Score = 31.2 bits (69), Expect = 0.004
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKA 38
G I+K L KEG V G L +I
Sbjct: 22 VNGIILKRLFKEGSDVKAGQQLYQIDPATY 51
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 28.8 bits (64), Expect = 0.015
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 6 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQ 34
GT+ L + G V + L I+
Sbjct: 52 EADKSGTVKAILVESGQPVEFDEPLVVIE 80
>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 103
Score = 25.9 bits (57), Expect = 0.22
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQTDK 37
+ KK GD V G+ L I +++
Sbjct: 48 IVLHKKIGDRVQKGEALATIHSNR 71
>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII)
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 24.7 bits (54), Expect = 0.66
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDK 37
+G K + +EG V GD + E
Sbjct: 81 KGEGFKRIAEEGQRVKVGDTVIEFDLPL 108
>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 24.7 bits (54), Expect = 0.71
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 14 VKWLKKEGDAVAPGDVLCEIQTDK 37
+ L G + G + D
Sbjct: 46 AELLVDVGQRLRRGTPWLRVHRDG 69
>d2tpta3 d.41.3.1 (A:336-440) Thymidine phosphorylase {Escherichia
coli [TaxId: 562]}
Length = 105
Score = 24.3 bits (53), Expect = 0.93
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDK 37
+ + GD V L I
Sbjct: 45 SVGFTDMARLGDQVDGQRPLAVIHAKD 71
>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc
{Mycoplasma capricolum [TaxId: 2095]}
Length = 154
Score = 24.3 bits (53), Expect = 1.1
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDK 37
+G + + V GD L +
Sbjct: 87 DGNGFESFVTQDQEVNAGDKLVTVDLKS 114
>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc
{Bacillus subtilis [TaxId: 1423]}
Length = 158
Score = 24.0 bits (52), Expect = 1.6
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDK 37
+G EGD V PG L E+ D
Sbjct: 89 KGEGFTSFVSEGDRVEPGQKLLEVDLDA 116
>d2nn6g2 b.84.4.2 (G:16-106) Ribosomal RNA-processing protein 40,
RRP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 23.2 bits (49), Expect = 2.4
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 21 GDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV 64
G V PG+ L + + A E + L + +V
Sbjct: 9 GQVVLPGEELLLPEQEDAEGPGGAVERPL---SLNARACSRVRV 49
>d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 556
Score = 22.6 bits (47), Expect = 5.6
Identities = 4/13 (30%), Positives = 9/13 (69%)
Query: 9 TEGTIVKWLKKEG 21
T+ I++ +K+ G
Sbjct: 459 TQSEIIQMMKERG 471
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.130 0.366
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 227,672
Number of extensions: 7696
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 28
Length of query: 64
Length of database: 2,407,596
Length adjustment: 33
Effective length of query: 31
Effective length of database: 1,954,506
Effective search space: 60589686
Effective search space used: 60589686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.0 bits)