Query psy10441
Match_columns 867
No_of_seqs 336 out of 1464
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 18:15:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0906|consensus 100.0 1E-204 3E-209 1683.6 65.3 832 5-866 3-843 (843)
2 KOG0904|consensus 100.0 1E-146 2E-151 1251.6 46.4 670 55-861 362-1075(1076)
3 KOG0905|consensus 100.0 2E-131 4E-136 1144.8 48.2 661 53-864 653-1348(1639)
4 cd00896 PI3Kc_III Phosphoinosi 100.0 3E-88 6.5E-93 746.8 39.4 346 518-865 2-350 (350)
5 cd00895 PI3Kc_C2_beta Phosphoi 100.0 2.3E-88 5E-93 741.2 36.3 336 517-863 1-354 (354)
6 cd05176 PI3Kc_C2_alpha Phospho 100.0 5.6E-87 1.2E-91 730.0 34.4 335 517-863 1-353 (353)
7 cd05177 PI3Kc_C2_gamma Phospho 100.0 1.7E-86 3.8E-91 729.4 34.9 335 518-863 2-354 (354)
8 cd05175 PI3Kc_IA_alpha Phospho 100.0 3.8E-85 8.1E-90 716.5 34.0 335 518-863 2-366 (366)
9 cd05165 PI3Kc_I Phosphoinositi 100.0 9.4E-85 2E-89 718.5 33.6 336 518-863 2-366 (366)
10 cd05174 PI3Kc_IA_delta Phospho 100.0 2.7E-84 5.8E-89 711.9 36.0 335 518-863 2-361 (361)
11 cd00894 PI3Kc_IB_gamma Phospho 100.0 4.2E-84 9E-89 711.2 34.0 335 518-862 2-364 (365)
12 cd05173 PI3Kc_IA_beta Phosphoi 100.0 1.3E-83 2.9E-88 708.4 36.7 335 518-863 2-361 (362)
13 cd05166 PI3Kc_II Phosphoinosit 100.0 3.8E-83 8.2E-88 706.2 36.2 334 518-863 2-353 (353)
14 cd00891 PI3Kc Phosphoinositide 100.0 6.9E-82 1.5E-86 697.4 34.6 335 517-863 1-352 (352)
15 KOG0902|consensus 100.0 3.3E-77 7.1E-82 705.2 39.8 491 308-863 1286-1799(1803)
16 cd05167 PI4Kc_III_alpha Phosph 100.0 1.8E-77 3.9E-82 649.4 31.7 286 572-863 1-308 (311)
17 cd00893 PI4Kc_III Phosphoinosi 100.0 1.1E-70 2.5E-75 592.1 26.7 276 584-864 3-287 (289)
18 cd05168 PI4Kc_III_beta Phospho 100.0 4.4E-68 9.5E-73 573.1 25.5 266 595-864 15-291 (293)
19 cd05172 PIKKc_DNA-PK DNA-depen 100.0 1E-56 2.2E-61 473.7 20.6 224 581-812 1-234 (235)
20 cd00892 PIKKc_ATR ATR (Ataxia 100.0 2.9E-56 6.2E-61 471.1 21.1 224 582-812 2-236 (237)
21 cd05169 PIKKc_TOR TOR (Target 100.0 1.3E-54 2.7E-59 470.4 19.5 224 582-812 2-279 (280)
22 cd00142 PI3Kc_like Phosphoinos 100.0 5.7E-54 1.2E-58 449.5 20.9 210 585-806 4-219 (219)
23 COG5032 TEL1 Phosphatidylinosi 100.0 5.5E-53 1.2E-57 549.4 35.0 394 452-864 1643-2098(2105)
24 cd05164 PIKKc Phosphoinositide 100.0 2.1E-53 4.4E-58 445.4 20.2 212 582-806 2-222 (222)
25 cd05171 PIKKc_ATM Ataxia telan 100.0 2.1E-53 4.6E-58 459.8 20.4 224 582-812 2-278 (279)
26 KOG0903|consensus 100.0 1.1E-52 2.4E-57 477.6 24.0 252 609-864 586-845 (847)
27 cd05170 PIKKc_SMG1 Suppressor 100.0 2.9E-51 6.2E-56 448.4 21.4 224 582-812 2-306 (307)
28 smart00146 PI3Kc Phosphoinosit 100.0 3.5E-50 7.6E-55 416.0 18.2 191 612-814 1-200 (202)
29 cd00872 PI3Ka_I Phosphoinositi 100.0 8.8E-50 1.9E-54 398.9 17.8 166 291-503 2-167 (171)
30 cd00870 PI3Ka_III Phosphoinosi 100.0 7E-50 1.5E-54 398.9 16.4 166 283-480 1-166 (166)
31 KOG0890|consensus 100.0 6.7E-47 1.4E-51 469.2 31.7 408 377-849 1876-2368(2382)
32 cd05163 TRRAP TRansformation/t 100.0 1.4E-46 3.1E-51 400.7 19.8 225 582-812 2-252 (253)
33 PF00613 PI3Ka: Phosphoinositi 100.0 1.3E-46 2.8E-51 382.7 18.2 176 284-506 1-176 (184)
34 cd00869 PI3Ka_II Phosphoinosit 100.0 1.8E-46 4E-51 372.8 17.3 163 291-501 2-165 (169)
35 smart00145 PI3Ka Phosphoinosit 100.0 7.8E-46 1.7E-50 375.9 18.1 171 289-506 4-175 (184)
36 PF00454 PI3_PI4_kinase: Phosp 100.0 3.6E-45 7.8E-50 386.4 17.8 199 610-812 1-234 (235)
37 PTZ00303 phosphatidylinositol 100.0 1.3E-43 2.7E-48 399.1 26.3 226 566-804 933-1283(1374)
38 cd00864 PI3Ka Phosphoinositide 100.0 3.5E-42 7.5E-47 339.8 15.3 151 291-480 2-152 (152)
39 KOG0892|consensus 100.0 1.5E-40 3.2E-45 414.6 25.0 238 579-823 2441-2733(2806)
40 cd08397 C2_PI3K_class_III C2 d 100.0 5.5E-40 1.2E-44 326.5 16.0 159 27-186 1-159 (159)
41 cd00871 PI4Ka Phosphoinositide 100.0 1.3E-36 2.9E-41 303.6 15.0 155 296-495 10-165 (175)
42 PF00792 PI3K_C2: Phosphoinosi 100.0 2E-31 4.3E-36 261.2 6.2 132 56-198 2-142 (142)
43 cd08398 C2_PI3K_class_I_alpha 100.0 9E-30 2E-34 252.7 15.2 115 15-150 5-123 (158)
44 cd08693 C2_PI3K_class_I_beta_d 100.0 4.6E-29 9.9E-34 251.9 15.6 120 14-152 4-139 (173)
45 cd04012 C2A_PI3K_class_II C2 d 100.0 3.5E-28 7.6E-33 245.5 14.8 129 13-158 3-144 (171)
46 cd08399 C2_PI3K_class_I_gamma 100.0 7.9E-28 1.7E-32 242.3 15.5 119 13-150 5-139 (178)
47 cd08380 C2_PI3K_like C2 domain 99.9 6.7E-27 1.4E-31 232.7 15.4 124 14-156 4-130 (156)
48 KOG0891|consensus 99.9 8.5E-28 1.8E-32 308.2 2.8 235 573-814 1951-2238(2341)
49 smart00142 PI3K_C2 Phosphoinos 99.8 4E-21 8.7E-26 177.4 7.5 94 22-119 1-95 (100)
50 KOG0889|consensus 99.5 2.2E-14 4.8E-19 185.7 12.7 239 568-812 3172-3481(3550)
51 cd08409 C2B_Synaptotagmin-15 C 96.9 0.0044 9.6E-08 60.6 8.8 77 54-132 33-109 (137)
52 cd08410 C2B_Synaptotagmin-17 C 96.7 0.0093 2E-07 58.0 9.9 79 55-135 34-112 (135)
53 cd08692 C2B_Tac2-N C2 domain s 96.6 0.013 2.8E-07 57.4 9.5 75 55-132 34-109 (135)
54 smart00239 C2 Protein kinase C 96.5 0.023 5E-07 50.1 10.3 74 55-134 20-93 (101)
55 cd04029 C2A_SLP-4_5 C2 domain 96.5 0.0076 1.7E-07 57.9 7.3 76 55-132 36-111 (125)
56 cd08677 C2A_Synaptotagmin-13 C 96.5 0.009 1.9E-07 57.2 7.5 74 55-131 31-104 (118)
57 cd08392 C2A_SLP-3 C2 domain fi 96.5 0.034 7.3E-07 53.8 11.6 77 54-132 35-111 (128)
58 cd08696 C2_Dock-C C2 domains f 96.4 0.039 8.4E-07 56.6 12.3 67 83-151 64-136 (179)
59 cd08680 C2_Kibra C2 domain fou 96.4 0.01 2.2E-07 57.2 7.7 78 54-132 33-110 (124)
60 cd08381 C2B_PI3K_class_II C2 d 96.4 0.038 8.3E-07 52.8 11.7 76 55-132 32-108 (122)
61 cd08393 C2A_SLP-1_2 C2 domain 96.4 0.0088 1.9E-07 57.4 7.2 76 55-132 36-111 (125)
62 cd08407 C2B_Synaptotagmin-13 C 96.4 0.0082 1.8E-07 59.0 6.9 74 56-131 38-111 (138)
63 cd08402 C2B_Synaptotagmin-1 C2 96.4 0.027 5.8E-07 54.7 10.5 75 55-131 35-109 (136)
64 cd08405 C2B_Synaptotagmin-7 C2 96.4 0.031 6.7E-07 54.2 10.9 76 55-132 35-110 (136)
65 cd00276 C2B_Synaptotagmin C2 d 96.4 0.038 8.3E-07 52.9 11.3 77 54-132 33-109 (134)
66 cd08395 C2C_Munc13 C2 domain t 96.3 0.017 3.6E-07 55.5 8.2 92 54-150 18-110 (120)
67 cd08685 C2_RGS-like C2 domain 96.2 0.048 1.1E-06 52.0 11.2 75 55-132 31-106 (119)
68 cd08404 C2B_Synaptotagmin-4 C2 96.2 0.054 1.2E-06 52.6 11.5 77 54-132 34-110 (136)
69 cd08388 C2A_Synaptotagmin-4-11 96.1 0.081 1.8E-06 51.0 12.3 88 54-148 36-124 (128)
70 cd08406 C2B_Synaptotagmin-12 C 96.1 0.034 7.4E-07 54.5 9.5 76 54-131 34-109 (136)
71 cd04028 C2B_RIM1alpha C2 domai 96.0 0.024 5.2E-07 56.3 7.8 73 55-132 50-123 (146)
72 cd08385 C2A_Synaptotagmin-1-5- 95.9 0.051 1.1E-06 51.6 9.7 74 55-132 36-109 (124)
73 cd08387 C2A_Synaptotagmin-8 C2 95.9 0.1 2.2E-06 49.6 11.6 74 55-132 36-109 (124)
74 cd08384 C2B_Rabphilin_Doc2 C2 95.9 0.083 1.8E-06 50.9 10.9 74 55-130 33-106 (133)
75 cd08408 C2B_Synaptotagmin-14_1 95.8 0.026 5.7E-07 55.3 7.5 77 54-132 34-111 (138)
76 PF00168 C2: C2 domain; Inter 95.7 0.1 2.2E-06 45.0 10.1 67 55-127 19-85 (85)
77 cd04041 C2A_fungal C2 domain f 95.7 0.067 1.4E-06 50.1 9.4 75 55-132 22-96 (111)
78 cd08403 C2B_Synaptotagmin-3-5- 95.7 0.11 2.4E-06 50.2 11.0 76 54-131 33-108 (134)
79 PF14429 DOCK-C2: C2 domain in 95.6 0.064 1.4E-06 55.1 9.5 64 84-149 70-137 (184)
80 cd08682 C2_Rab11-FIP_classI C2 95.6 0.091 2E-06 50.2 10.0 71 55-131 19-91 (126)
81 cd08688 C2_KIAA0528-like C2 do 95.5 0.044 9.6E-07 51.2 7.4 71 55-132 20-91 (110)
82 cd04030 C2C_KIAA1228 C2 domain 95.5 0.15 3.3E-06 48.4 11.3 76 55-132 36-113 (127)
83 PF13575 DUF4135: Domain of un 95.5 0.14 2.9E-06 58.5 12.7 134 581-748 45-178 (370)
84 cd08389 C2A_Synaptotagmin-14_1 95.4 0.15 3.1E-06 49.0 10.8 75 54-133 35-110 (124)
85 cd04031 C2A_RIM1alpha C2 domai 95.4 0.1 2.2E-06 49.4 9.7 76 55-132 36-112 (125)
86 cd08390 C2A_Synaptotagmin-15-1 95.4 0.048 1E-06 51.6 7.2 74 55-132 35-108 (123)
87 PLN02222 phosphoinositide phos 95.4 0.08 1.7E-06 63.3 10.5 86 54-148 477-563 (581)
88 cd04037 C2E_Ferlin C2 domain f 95.4 0.14 3.1E-06 48.9 10.5 70 55-131 20-89 (124)
89 cd08386 C2A_Synaptotagmin-7 C2 95.3 0.097 2.1E-06 49.7 9.1 74 55-132 36-110 (125)
90 cd04009 C2B_Munc13-like C2 dom 95.3 0.23 5.1E-06 48.0 11.9 76 55-130 36-113 (133)
91 PLN02952 phosphoinositide phos 95.2 0.1 2.2E-06 62.7 10.6 84 55-147 496-580 (599)
92 cd08521 C2A_SLP C2 domain firs 95.1 0.062 1.3E-06 50.8 7.2 76 55-132 35-110 (123)
93 cd08694 C2_Dock-A C2 domains f 95.1 0.1 2.3E-06 54.0 9.0 66 83-149 63-133 (196)
94 cd08679 C2_DOCK180_related C2 95.1 0.13 2.8E-06 52.7 9.7 73 77-150 56-134 (178)
95 cd04044 C2A_Tricalbin-like C2 95.0 0.079 1.7E-06 50.0 7.6 70 55-132 23-92 (124)
96 cd04032 C2_Perforin C2 domain 95.0 0.11 2.3E-06 50.4 8.4 69 55-131 47-115 (127)
97 cd04039 C2_PSD C2 domain prese 94.9 0.11 2.5E-06 48.6 8.2 69 56-132 26-94 (108)
98 cd04036 C2_cPLA2 C2 domain pre 94.9 0.18 3.9E-06 47.6 9.6 70 55-131 20-89 (119)
99 cd04045 C2C_Tricalbin-like C2 94.8 0.25 5.5E-06 47.1 10.5 69 55-132 21-89 (120)
100 cd04019 C2C_MCTP_PRT_plant C2 94.8 0.28 6.2E-06 48.8 11.2 70 54-132 19-89 (150)
101 cd00275 C2_PLC_like C2 domain 94.8 0.13 2.8E-06 48.8 8.4 84 55-146 24-108 (128)
102 cd00030 C2 C2 domain. The C2 d 94.7 0.27 5.9E-06 42.7 9.7 72 55-134 19-90 (102)
103 cd04018 C2C_Ferlin C2 domain t 94.7 0.14 3E-06 51.1 8.6 70 55-132 34-103 (151)
104 cd04042 C2A_MCTP_PRT C2 domain 94.7 0.31 6.7E-06 46.1 10.6 68 55-131 20-87 (121)
105 cd04050 C2B_Synaptotagmin-like 94.6 0.26 5.5E-06 45.6 9.7 67 54-132 19-85 (105)
106 cd08382 C2_Smurf-like C2 domai 94.6 0.29 6.4E-06 46.7 10.3 68 55-132 20-89 (123)
107 cd08375 C2_Intersectin C2 doma 94.4 0.42 9.2E-06 46.7 11.0 69 55-132 35-103 (136)
108 cd08376 C2B_MCTP_PRT C2 domain 94.3 0.47 1E-05 44.4 10.9 69 55-132 20-88 (116)
109 PLN02230 phosphoinositide phos 94.3 0.19 4.1E-06 60.4 9.9 85 55-148 495-580 (598)
110 cd04051 C2_SRC2_like C2 domain 94.3 0.29 6.3E-06 46.5 9.4 73 55-132 20-94 (125)
111 cd04033 C2_NEDD4_NEDD4L C2 dom 94.1 0.39 8.4E-06 46.1 10.1 73 55-132 20-94 (133)
112 cd04035 C2A_Rabphilin_Doc2 C2 94.1 0.37 8.1E-06 45.7 9.7 73 55-130 35-108 (123)
113 cd04022 C2A_MCTP_PRT_plant C2 94.1 0.14 3.1E-06 48.9 6.9 70 55-130 20-90 (127)
114 cd04014 C2_PKC_epsilon C2 doma 94.0 0.24 5.3E-06 47.7 8.5 67 55-131 34-100 (132)
115 cd04011 C2B_Ferlin C2 domain s 94.0 0.25 5.4E-06 46.1 8.3 72 55-132 20-92 (111)
116 cd08373 C2A_Ferlin C2 domain f 94.0 0.41 8.8E-06 45.8 9.9 68 56-130 15-82 (127)
117 cd04020 C2B_SLP_1-2-3-4 C2 dom 93.9 0.37 8.1E-06 48.5 9.9 74 55-130 47-121 (162)
118 cd08400 C2_Ras_p21A1 C2 domain 93.9 0.35 7.5E-06 46.5 9.2 68 56-132 22-89 (126)
119 cd04025 C2B_RasA1_RasA4 C2 dom 93.9 0.29 6.2E-06 46.4 8.6 68 56-132 21-88 (123)
120 cd04021 C2_E3_ubiquitin_ligase 93.9 0.26 5.6E-06 47.3 8.2 65 56-130 22-86 (125)
121 cd08379 C2D_MCTP_PRT_plant C2 93.8 0.58 1.3E-05 45.3 10.6 69 54-132 22-96 (126)
122 cd04048 C2A_Copine C2 domain f 93.7 0.25 5.5E-06 46.7 7.7 74 55-132 20-99 (120)
123 PLN02223 phosphoinositide phos 93.6 0.37 7.9E-06 57.1 10.2 85 55-148 434-519 (537)
124 cd04026 C2_PKC_alpha_gamma C2 93.5 0.97 2.1E-05 43.3 11.5 73 55-130 33-105 (131)
125 cd04040 C2D_Tricalbin-like C2 93.5 0.58 1.3E-05 43.6 9.7 69 56-132 20-88 (115)
126 cd04043 C2_Munc13_fungal C2 do 93.4 0.77 1.7E-05 43.6 10.7 70 55-130 21-90 (126)
127 cd08697 C2_Dock-D C2 domains f 93.4 1 2.2E-05 46.6 12.0 68 82-150 65-141 (185)
128 cd08678 C2_C21orf25-like C2 do 93.4 0.28 6.1E-06 46.9 7.6 70 55-132 17-86 (126)
129 cd04010 C2B_RasA3 C2 domain se 93.2 0.28 6.1E-06 48.8 7.5 77 55-132 18-106 (148)
130 cd08690 C2_Freud-1 C2 domain f 93.0 0.46 9.9E-06 47.8 8.7 76 54-132 23-106 (155)
131 KOG0169|consensus 93.0 0.3 6.5E-06 59.1 8.5 107 20-148 618-726 (746)
132 cd04052 C2B_Tricalbin-like C2 92.8 0.46 9.9E-06 44.5 8.0 68 55-131 12-79 (111)
133 PF14186 Aida_C2: Cytoskeletal 92.8 0.69 1.5E-05 45.9 9.3 89 56-148 31-123 (147)
134 cd04015 C2_plant_PLD C2 domain 92.7 0.74 1.6E-05 46.2 9.8 68 53-130 55-122 (158)
135 cd04024 C2A_Synaptotagmin-like 92.6 0.47 1E-05 45.0 7.9 68 56-132 24-91 (128)
136 cd04016 C2_Tollip C2 domain pr 92.5 0.62 1.3E-05 44.8 8.5 67 55-131 21-88 (121)
137 cd08374 C2F_Ferlin C2 domain s 92.3 0.55 1.2E-05 46.0 7.9 77 54-131 23-119 (133)
138 cd04038 C2_ArfGAP C2 domain pr 92.2 0.57 1.2E-05 46.4 8.1 66 55-130 21-86 (145)
139 PLN02228 Phosphoinositide phos 92.0 0.8 1.7E-05 54.9 10.3 84 55-147 457-542 (567)
140 cd08391 C2A_C2C_Synaptotagmin_ 92.0 0.67 1.5E-05 43.4 8.0 68 55-132 27-94 (121)
141 cd04049 C2_putative_Elicitor-r 91.9 1.7 3.7E-05 41.2 10.8 72 55-132 21-93 (124)
142 cd08378 C2B_MCTP_PRT_plant C2 91.9 0.71 1.5E-05 44.0 8.1 67 56-132 17-83 (121)
143 cd08675 C2B_RasGAP C2 domain s 91.9 0.6 1.3E-05 45.7 7.7 75 55-131 18-104 (137)
144 cd08681 C2_fungal_Inn1p-like C 91.7 1.2 2.6E-05 41.7 9.4 68 55-132 21-89 (118)
145 cd04047 C2B_Copine C2 domain s 91.6 0.55 1.2E-05 43.5 6.9 74 55-132 20-97 (110)
146 cd08377 C2C_MCTP_PRT C2 domain 91.3 2.2 4.7E-05 39.9 10.7 67 56-132 22-88 (119)
147 cd08695 C2_Dock-B C2 domains f 91.1 0.52 1.1E-05 48.8 6.7 66 83-149 63-131 (189)
148 cd04054 C2A_Rasal1_RasA4 C2 do 91.0 2.3 5.1E-05 40.3 10.7 67 56-131 21-87 (121)
149 cd08691 C2_NEDL1-like C2 domai 90.6 1.1 2.4E-05 44.1 8.1 73 55-132 20-103 (137)
150 KOG1028|consensus 90.6 0.64 1.4E-05 54.1 7.5 74 53-128 316-389 (421)
151 cd08686 C2_ABR C2 domain in th 90.2 1.3 2.7E-05 42.6 7.9 69 56-130 15-90 (118)
152 cd08383 C2A_RasGAP C2 domain ( 90.2 2.4 5.2E-05 39.5 9.8 71 55-132 17-87 (117)
153 cd08676 C2A_Munc13-like C2 dom 90.2 2 4.3E-05 43.1 9.7 50 76-132 92-141 (153)
154 cd04046 C2_Calpain C2 domain p 89.1 3.6 7.9E-05 39.3 10.3 67 55-132 23-89 (126)
155 cd04013 C2_SynGAP_like C2 doma 88.9 1.7 3.6E-05 43.4 7.9 67 57-132 28-98 (146)
156 cd08401 C2A_RasA2_RasA3 C2 dom 88.3 2.1 4.5E-05 40.8 8.0 68 55-131 21-88 (121)
157 cd04027 C2B_Munc13 C2 domain s 86.7 5.7 0.00012 38.0 10.1 66 56-131 22-98 (127)
158 cd04017 C2D_Ferlin C2 domain f 86.5 4.5 9.7E-05 39.2 9.3 68 55-128 21-94 (135)
159 cd08394 C2A_Munc13 C2 domain f 86.0 3.5 7.6E-05 40.1 8.1 62 59-132 23-84 (127)
160 TIGR03843 conserved hypothetic 85.9 0.68 1.5E-05 49.4 3.4 114 640-756 63-182 (253)
161 COG0661 AarF Predicted unusual 85.5 1.5 3.2E-05 52.4 6.3 84 644-745 225-312 (517)
162 TIGR03724 arch_bud32 Kae1-asso 82.9 22 0.00048 36.0 13.0 72 649-745 61-136 (199)
163 PLN03008 Phospholipase D delta 82.2 3.7 8E-05 51.1 7.9 68 54-131 75-142 (868)
164 cd04792 LanM-like LanM-like pr 81.5 5.2 0.00011 50.5 9.3 116 596-748 103-218 (825)
165 PF06176 WaaY: Lipopolysacchar 77.8 24 0.00052 37.8 11.3 126 589-745 36-181 (229)
166 cd05603 STKc_SGK2 Catalytic do 74.4 49 0.0011 36.2 13.3 25 722-746 120-144 (321)
167 KOG1030|consensus 73.7 8.4 0.00018 39.2 6.3 66 56-131 27-92 (168)
168 cd05590 STKc_nPKC_eta Catalyti 71.7 51 0.0011 36.2 12.7 25 722-746 120-144 (320)
169 PF06293 Kdo: Lipopolysacchari 68.7 18 0.00038 37.7 7.8 99 626-746 57-169 (206)
170 PRK14879 serine/threonine prot 68.2 46 0.001 33.9 10.7 63 661-745 77-141 (211)
171 KOG0667|consensus 67.9 22 0.00048 42.9 9.1 116 614-745 218-338 (586)
172 cd05602 STKc_SGK1 Catalytic do 67.6 87 0.0019 34.4 13.5 25 722-746 120-144 (325)
173 cd05604 STKc_SGK3 Catalytic do 67.3 93 0.002 34.1 13.6 45 702-746 98-144 (325)
174 KOG0608|consensus 67.0 4.9 0.00011 48.4 3.4 40 708-747 739-778 (1034)
175 cd05053 PTKc_FGFR Catalytic do 66.5 1.1E+02 0.0023 32.7 13.6 25 722-746 156-180 (293)
176 cd05627 STKc_NDR2 Catalytic do 65.9 68 0.0015 35.8 12.4 25 722-746 125-149 (360)
177 cd06625 STKc_MEKK3_like Cataly 65.8 1.7E+02 0.0037 30.3 15.1 24 722-745 128-151 (263)
178 cd05088 PTKc_Tie2 Catalytic do 65.0 2.1E+02 0.0045 31.0 22.0 47 701-747 125-173 (303)
179 cd05626 STKc_LATS2 Catalytic d 64.6 1E+02 0.0022 34.8 13.6 45 701-745 102-148 (381)
180 KOG1028|consensus 64.2 37 0.00079 39.7 9.9 78 55-136 187-264 (421)
181 cd05575 STKc_SGK Catalytic dom 64.0 1.2E+02 0.0025 33.3 13.6 25 722-746 120-144 (323)
182 COG5038 Ca2+-dependent lipid-b 63.8 20 0.00043 46.1 7.9 87 20-130 438-524 (1227)
183 PRK04750 ubiB putative ubiquin 63.4 4.3 9.3E-05 48.8 2.2 24 722-745 284-311 (537)
184 PRK10359 lipopolysaccharide co 62.4 5.2 0.00011 42.9 2.4 23 722-745 159-181 (232)
185 cd05581 STKc_PDK1 Catalytic do 62.0 61 0.0013 34.0 10.5 26 721-746 125-150 (280)
186 cd08684 C2A_Tac2-N C2 domain f 62.0 13 0.00028 34.1 4.4 70 54-131 19-90 (103)
187 cd05587 STKc_cPKC Catalytic do 60.5 1.4E+02 0.0031 32.7 13.4 24 722-745 125-148 (324)
188 cd05151 ChoK Choline Kinase (C 60.3 7 0.00015 38.3 2.8 27 719-746 109-135 (170)
189 TIGR01982 UbiB 2-polyprenylphe 59.6 6.4 0.00014 46.1 2.7 24 722-745 281-304 (437)
190 KOG0610|consensus 59.4 56 0.0012 37.9 9.9 90 643-749 136-230 (459)
191 PF10358 NT-C2: N-terminal C2 59.1 60 0.0013 31.4 9.1 94 18-135 7-106 (143)
192 KOG0696|consensus 59.1 12 0.00026 43.1 4.5 75 53-130 198-272 (683)
193 cd05616 STKc_cPKC_beta Catalyt 59.1 1.3E+02 0.0029 32.9 12.9 25 722-746 125-149 (323)
194 cd05145 RIO1_like RIO kinase f 58.6 7.1 0.00015 39.9 2.5 27 719-746 137-165 (190)
195 cd05573 STKc_ROCK_NDR_like Cat 57.8 98 0.0021 34.1 11.7 25 722-746 125-149 (350)
196 cd05574 STKc_phototropin_like 57.7 2.7E+02 0.0058 30.1 14.9 28 721-748 126-153 (316)
197 cd05617 STKc_aPKC_zeta Catalyt 57.6 1.8E+02 0.0039 32.0 13.7 25 722-746 120-144 (327)
198 cd05601 STKc_CRIK Catalytic do 57.2 2.1E+02 0.0046 31.2 14.2 24 722-745 126-149 (330)
199 cd05147 RIO1_euk RIO kinase fa 57.1 7.1 0.00015 40.2 2.2 27 719-746 137-165 (190)
200 cd05628 STKc_NDR1 Catalytic do 57.1 1.4E+02 0.003 33.5 12.8 27 719-745 120-148 (363)
201 PF13646 HEAT_2: HEAT repeats; 55.9 11 0.00023 32.9 2.9 58 344-406 16-74 (88)
202 cd05598 STKc_LATS Catalytic do 55.6 1.4E+02 0.0031 33.5 12.6 27 719-745 120-148 (376)
203 cd05586 STKc_Sck1_like Catalyt 55.1 1.8E+02 0.0039 31.9 13.1 27 719-745 115-143 (330)
204 cd08689 C2_fungal_Pkc1p C2 dom 55.1 34 0.00073 32.5 6.1 69 55-137 22-90 (109)
205 cd05101 PTKc_FGFR2 Catalytic d 53.7 2.3E+02 0.005 30.5 13.5 25 722-746 161-185 (304)
206 PF03130 HEAT_PBS: PBS lyase H 53.2 19 0.00042 25.1 3.2 26 376-404 1-26 (27)
207 cd05099 PTKc_FGFR4 Catalytic d 52.8 2.2E+02 0.0047 31.0 13.2 26 722-747 158-183 (314)
208 cd05591 STKc_nPKC_epsilon Cata 52.6 2.4E+02 0.0051 30.8 13.5 25 722-746 120-144 (321)
209 cd05042 PTKc_Aatyk Catalytic d 52.0 28 0.00061 36.6 5.9 46 702-747 102-149 (269)
210 cd05588 STKc_aPKC Catalytic do 51.3 2.5E+02 0.0053 30.9 13.5 46 701-746 97-144 (329)
211 cd05069 PTKc_Yes Catalytic dom 51.2 1.4E+02 0.0031 31.1 11.1 24 722-745 126-149 (260)
212 cd06637 STKc_TNIK Catalytic do 51.2 2.8E+02 0.0061 28.9 13.5 25 722-746 135-159 (272)
213 KOG0616|consensus 50.8 9.5 0.00021 42.3 2.0 34 712-745 154-191 (355)
214 cd05597 STKc_DMPK_like Catalyt 50.2 2.2E+02 0.0048 31.3 12.9 66 702-767 104-178 (331)
215 cd05618 STKc_aPKC_iota Catalyt 49.3 3.2E+02 0.007 30.0 14.0 25 722-746 120-144 (329)
216 cd05100 PTKc_FGFR3 Catalytic d 49.3 1.8E+02 0.004 31.9 12.1 25 722-746 158-182 (334)
217 cd05144 RIO2_C RIO kinase fami 49.0 16 0.00034 37.4 3.2 28 722-749 149-176 (198)
218 cd05580 STKc_PKA Catalytic dom 48.7 3.5E+02 0.0076 28.8 13.9 27 721-747 124-150 (290)
219 cd05571 STKc_PKB Catalytic dom 48.4 2.6E+02 0.0056 30.6 13.0 25 722-746 119-143 (323)
220 cd05625 STKc_LATS1 Catalytic d 47.9 2.5E+02 0.0055 31.5 13.2 45 701-745 102-148 (382)
221 cd05122 PKc_STE Catalytic doma 47.0 3.1E+02 0.0068 27.7 12.7 49 719-767 119-172 (253)
222 cd05085 PTKc_Fer Catalytic dom 46.8 3E+02 0.0065 28.3 12.6 25 722-746 117-141 (250)
223 PRK05231 homoserine kinase; Pr 46.2 47 0.001 36.6 6.7 28 719-746 189-216 (319)
224 cd05594 STKc_PKB_alpha Catalyt 45.2 3.5E+02 0.0076 29.6 13.4 27 719-745 115-143 (325)
225 PF07162 B9-C2: Ciliary basal 45.2 1.4E+02 0.0031 30.2 9.5 89 55-148 16-116 (168)
226 PTZ00426 cAMP-dependent protei 44.5 32 0.0007 38.4 5.2 28 719-746 150-179 (340)
227 PRK10271 thiK thiamine kinase; 44.1 19 0.00041 37.5 2.9 34 716-750 76-109 (188)
228 PRK15123 lipopolysaccharide co 43.7 72 0.0016 34.9 7.5 70 661-745 113-192 (268)
229 cd05592 STKc_nPKC_theta_delta 43.7 3.2E+02 0.007 29.8 12.8 24 722-745 120-143 (316)
230 cd05600 STKc_Sid2p_Dbf2p Catal 43.6 3.2E+02 0.0069 29.9 12.8 25 722-746 125-149 (333)
231 cd05119 RIO RIO kinase family, 43.0 18 0.00039 36.2 2.5 26 721-747 138-163 (187)
232 cd05630 STKc_GRK6 Catalytic do 42.8 3.6E+02 0.0078 28.8 12.8 46 701-746 103-150 (285)
233 TIGR00938 thrB_alt homoserine 42.7 64 0.0014 35.5 7.1 29 717-745 187-215 (307)
234 cd05615 STKc_cPKC_alpha Cataly 42.7 3.5E+02 0.0076 29.6 13.0 25 722-746 125-149 (323)
235 cd05156 ChoK_euk Choline Kinas 42.5 19 0.00041 39.4 2.8 34 715-748 177-214 (302)
236 cd05153 HomoserineK_II Homoser 42.4 49 0.0011 35.9 6.0 30 717-746 175-204 (296)
237 TIGR02172 Fb_sc_TIGR02172 Fibr 41.9 17 0.00038 38.5 2.3 27 721-748 157-184 (226)
238 PRK01723 3-deoxy-D-manno-octul 41.9 19 0.00042 38.4 2.7 38 709-746 151-190 (239)
239 cd06631 STKc_YSK4 Catalytic do 41.8 2.7E+02 0.0058 29.0 11.4 26 721-746 125-150 (265)
240 cd05070 PTKc_Fyn_Yrk Catalytic 41.5 2.2E+02 0.0049 29.6 10.8 25 722-746 126-150 (260)
241 cd05593 STKc_PKB_gamma Catalyt 40.7 3.7E+02 0.0081 29.5 12.8 25 722-746 119-143 (328)
242 cd05034 PTKc_Src_like Catalyti 40.6 2.6E+02 0.0056 29.0 11.0 27 721-747 126-152 (261)
243 PHA00451 protein kinase 40.3 65 0.0014 35.4 6.2 84 673-762 148-231 (362)
244 PRK12274 serine/threonine prot 40.1 22 0.00048 37.8 2.7 31 716-746 107-140 (218)
245 PF01636 APH: Phosphotransfera 39.7 19 0.00041 36.7 2.2 32 715-746 164-196 (239)
246 PLN03200 cellulose synthase-in 39.5 49 0.0011 45.8 6.3 82 55-144 1998-2080(2102)
247 cd05033 PTKc_EphR Catalytic do 39.4 4.6E+02 0.01 27.3 13.0 27 721-747 129-155 (266)
248 cd05595 STKc_PKB_beta Catalyti 39.1 3.6E+02 0.0077 29.6 12.3 25 722-746 119-143 (323)
249 cd05577 STKc_GRK Catalytic dom 39.0 4.9E+02 0.011 27.4 13.1 26 721-746 118-143 (277)
250 cd05621 STKc_ROCK2 Catalytic d 38.7 5.7E+02 0.012 28.8 14.1 47 722-768 166-219 (370)
251 cd06656 STKc_PAK3 Catalytic do 38.7 5.2E+02 0.011 27.7 16.2 45 722-766 139-189 (297)
252 cd05570 STKc_PKC Catalytic dom 38.6 4.3E+02 0.0094 28.8 12.8 24 722-745 120-143 (318)
253 cd05585 STKc_YPK1_like Catalyt 37.8 4.3E+02 0.0093 28.7 12.6 25 722-746 117-141 (312)
254 cd05614 STKc_MSK2_N N-terminal 37.7 69 0.0015 35.2 6.3 24 722-745 129-152 (332)
255 cd05610 STKc_MASTL Catalytic d 37.3 4.3E+02 0.0093 32.8 13.7 24 722-745 128-151 (669)
256 cd05044 PTKc_c-ros Catalytic d 37.1 83 0.0018 32.9 6.6 24 722-745 130-158 (269)
257 cd05120 APH_ChoK_like Aminogly 36.8 27 0.00059 32.4 2.6 25 722-746 113-137 (155)
258 cd07862 STKc_CDK6 Catalytic do 36.6 72 0.0016 34.0 6.2 46 701-746 111-158 (290)
259 PTZ00267 NIMA-related protein 36.5 4.3E+02 0.0094 31.0 13.1 25 722-746 193-217 (478)
260 KOG0612|consensus 36.5 53 0.0012 42.6 5.6 49 722-770 199-254 (1317)
261 PLN03224 probable serine/threo 36.4 1.2E+02 0.0026 36.4 8.4 86 661-746 263-357 (507)
262 KOG3087|consensus 36.3 3.8E+02 0.0082 28.5 10.7 105 625-749 55-167 (229)
263 cd06607 STKc_TAO Catalytic dom 36.2 2.9E+02 0.0063 29.8 10.9 44 722-765 139-184 (307)
264 cd05596 STKc_ROCK Catalytic do 36.1 4.1E+02 0.0089 29.9 12.5 26 722-747 166-191 (370)
265 KOG0598|consensus 36.1 20 0.00043 40.7 1.7 34 713-746 136-173 (357)
266 cd05607 STKc_GRK7 Catalytic do 35.7 4.9E+02 0.011 27.5 12.4 29 718-746 113-143 (277)
267 cd05116 PTKc_Syk Catalytic dom 35.5 5.2E+02 0.011 26.7 13.9 46 701-746 96-143 (257)
268 cd05071 PTKc_Src Catalytic dom 35.4 3.9E+02 0.0085 27.9 11.5 25 722-746 126-150 (262)
269 PF10366 Vps39_1: Vacuolar sor 35.3 30 0.00065 32.6 2.5 74 319-392 6-97 (108)
270 KOG1235|consensus 35.0 1.1E+02 0.0024 37.0 7.8 77 655-747 274-354 (538)
271 cd06614 STKc_PAK Catalytic dom 34.9 3.1E+02 0.0067 29.0 10.7 29 718-746 134-164 (286)
272 KOG0594|consensus 34.5 99 0.0021 34.9 6.8 65 679-746 102-168 (323)
273 cd05624 STKc_MRCK_beta Catalyt 34.4 5E+02 0.011 28.5 12.6 25 722-746 126-150 (331)
274 cd05049 PTKc_Trk Catalytic dom 34.3 5E+02 0.011 27.2 12.1 96 647-745 71-169 (280)
275 cd05609 STKc_MAST Catalytic do 34.3 6.1E+02 0.013 27.2 13.8 25 721-745 124-148 (305)
276 cd05579 STKc_MAST_like Catalyt 34.2 5.3E+02 0.011 26.4 12.2 26 722-747 117-142 (265)
277 cd05059 PTKc_Tec_like Catalyti 34.0 83 0.0018 32.8 6.0 24 722-745 124-147 (256)
278 PF15625 CC2D2AN-C2: CC2D2A N- 33.8 1.4E+02 0.003 30.3 7.3 73 56-136 35-109 (168)
279 cd00180 PKc Catalytic domain o 33.7 4.4E+02 0.0095 25.3 11.8 28 719-746 113-141 (215)
280 cd05629 STKc_NDR_like_fungal C 33.6 6.9E+02 0.015 27.9 13.7 24 722-745 125-148 (377)
281 KOG1242|consensus 33.6 3.8E+02 0.0083 32.6 11.7 134 327-481 257-406 (569)
282 cd05154 ACAD10_11_like Acyl-Co 33.5 30 0.00065 35.1 2.5 31 716-746 173-205 (223)
283 KOG0690|consensus 33.1 1.2E+02 0.0026 34.4 6.9 44 722-765 292-341 (516)
284 cd06638 STKc_myosinIIIA Cataly 32.8 75 0.0016 33.7 5.5 25 722-746 148-172 (286)
285 PF10707 YrbL-PhoP_reg: PhoP r 32.8 1.2E+02 0.0025 31.9 6.7 83 640-742 71-166 (199)
286 cd05623 STKc_MRCK_alpha Cataly 32.7 5.3E+02 0.011 28.3 12.4 46 722-767 126-178 (332)
287 cd05096 PTKc_DDR1 Catalytic do 32.6 4.5E+02 0.0098 28.2 11.7 25 722-746 162-186 (304)
288 COG5096 Vesicle coat complex, 32.4 69 0.0015 40.1 5.6 79 327-406 54-139 (757)
289 PF06702 DUF1193: Protein of u 32.4 1.6E+02 0.0035 31.5 7.6 109 705-827 88-199 (221)
290 cd06654 STKc_PAK1 Catalytic do 31.7 5.6E+02 0.012 27.5 12.2 26 722-747 140-165 (296)
291 cd05622 STKc_ROCK1 Catalytic d 31.6 7.9E+02 0.017 27.6 14.6 46 722-767 166-218 (371)
292 COG3642 Mn2+-dependent serine/ 31.1 1.5E+02 0.0033 31.1 7.0 124 647-799 61-189 (204)
293 cd07863 STKc_CDK4 Catalytic do 30.6 1E+02 0.0022 32.7 6.1 25 722-746 132-156 (288)
294 cd05576 STKc_RPK118_like Catal 30.5 1.1E+02 0.0023 31.8 6.1 24 722-745 109-132 (237)
295 smart00090 RIO RIO-like kinase 30.3 35 0.00075 36.5 2.4 44 702-746 150-196 (237)
296 PF03701 UPF0181: Uncharacteri 30.2 85 0.0018 25.7 3.9 43 806-848 3-46 (51)
297 cd05039 PTKc_Csk_like Catalyti 30.2 6.3E+02 0.014 26.0 12.6 48 701-748 103-152 (256)
298 cd05111 PTK_HER3 Pseudokinase 29.7 6.5E+02 0.014 26.6 12.2 24 722-745 133-156 (279)
299 PF07035 Mic1: Colon cancer-as 29.6 49 0.0011 33.8 3.2 49 359-407 60-113 (167)
300 cd05572 STKc_cGK_PKG Catalytic 29.5 6.5E+02 0.014 26.0 14.0 28 719-746 114-141 (262)
301 cd05068 PTKc_Frk_like Catalyti 29.4 1.3E+02 0.0027 31.5 6.5 25 722-746 127-151 (261)
302 cd05041 PTKc_Fes_like Catalyti 29.4 6.2E+02 0.013 25.9 11.7 26 721-746 116-141 (251)
303 cd05047 PTKc_Tie Catalytic dom 29.1 6.8E+02 0.015 26.1 14.0 46 700-747 112-161 (270)
304 cd05599 STKc_NDR_like Catalyti 29.1 6.1E+02 0.013 28.1 12.2 25 722-746 125-149 (364)
305 KOG0603|consensus 28.9 36 0.00079 41.2 2.4 28 721-748 438-466 (612)
306 cd06655 STKc_PAK2 Catalytic do 28.9 7.5E+02 0.016 26.5 12.7 26 721-746 138-163 (296)
307 cd05087 PTKc_Aatyk1_Aatyk3 Cat 28.9 1.1E+02 0.0025 32.1 6.0 25 722-746 124-148 (269)
308 cd05620 STKc_nPKC_delta Cataly 28.8 7.4E+02 0.016 26.9 12.7 25 722-746 120-144 (316)
309 cd05084 PTKc_Fes Catalytic dom 28.7 6.3E+02 0.014 25.9 11.6 25 722-746 118-142 (252)
310 cd05155 APH_ChoK_like_1 Unchar 28.6 43 0.00094 35.2 2.7 32 716-747 163-195 (235)
311 cd05083 PTKc_Chk Catalytic dom 28.4 1.3E+02 0.0029 31.1 6.4 26 722-747 124-149 (254)
312 cd05619 STKc_nPKC_theta Cataly 28.2 8.1E+02 0.017 26.7 13.1 25 722-746 120-144 (316)
313 cd08224 STKc_Nek6_Nek7 Catalyt 28.0 6.8E+02 0.015 25.8 14.1 25 722-746 130-154 (267)
314 cd05608 STKc_GRK1 Catalytic do 27.8 7.5E+02 0.016 26.2 12.7 25 722-746 121-145 (280)
315 cd08687 C2_PKN-like C2 domain 27.7 1.3E+02 0.0029 27.8 5.2 46 59-113 10-55 (98)
316 cd05108 PTKc_EGFR Catalytic do 27.5 6.9E+02 0.015 27.0 12.1 25 722-746 133-157 (316)
317 PRK10345 hypothetical protein; 27.4 1.5E+02 0.0032 31.2 6.4 22 721-742 128-153 (210)
318 cd05066 PTKc_EphR_A Catalytic 27.4 7.2E+02 0.016 25.8 13.2 26 721-746 129-154 (267)
319 cd05075 PTKc_Axl Catalytic dom 27.3 1.4E+02 0.0031 31.2 6.5 25 722-746 136-160 (272)
320 KOG0662|consensus 27.0 1.2E+02 0.0027 31.5 5.5 50 699-749 100-154 (292)
321 cd05157 ETNK_euk Ethanolamine 26.9 52 0.0011 34.3 3.0 33 716-748 169-202 (235)
322 cd05098 PTKc_FGFR1 Catalytic d 26.8 1.4E+02 0.003 32.4 6.3 46 701-746 141-188 (307)
323 cd06657 STKc_PAK4 Catalytic do 26.7 81 0.0018 34.0 4.5 45 702-746 118-164 (292)
324 cd06636 STKc_MAP4K4_6 Catalyti 26.7 1.9E+02 0.0041 30.6 7.3 25 722-746 145-169 (282)
325 PHA03390 pk1 serine/threonine- 26.6 4.4E+02 0.0095 27.8 10.1 66 701-766 110-180 (267)
326 PRK05114 hypothetical protein; 26.4 99 0.0021 26.0 3.7 44 806-849 3-47 (59)
327 cd05086 PTKc_Aatyk2 Catalytic 26.1 1.3E+02 0.0028 31.7 5.9 25 722-746 123-147 (268)
328 cd06608 STKc_myosinIII_like Ca 25.9 82 0.0018 32.8 4.3 25 722-746 137-161 (275)
329 cd05097 PTKc_DDR_like Catalyti 25.9 8.2E+02 0.018 26.0 12.4 25 721-745 152-176 (295)
330 COG0510 ycfN Thiamine kinase a 25.6 53 0.0011 36.0 2.8 34 717-750 153-186 (269)
331 cd05092 PTKc_TrkA Catalytic do 25.6 8.1E+02 0.017 25.8 12.3 25 721-745 145-169 (280)
332 PF00069 Pkinase: Protein kina 25.5 36 0.00079 35.3 1.5 44 722-765 122-171 (260)
333 PF01633 Choline_kinase: Choli 25.3 45 0.00098 34.5 2.1 29 717-745 143-172 (211)
334 PF13646 HEAT_2: HEAT repeats; 25.3 76 0.0016 27.5 3.3 30 372-404 12-41 (88)
335 cd07871 STKc_PCTAIRE3 Catalyti 25.3 85 0.0018 33.7 4.3 25 722-746 127-151 (288)
336 cd05048 PTKc_Ror Catalytic Dom 25.0 6E+02 0.013 26.6 10.8 25 722-746 148-172 (283)
337 cd05038 PTKc_Jak_rpt2 Catalyti 24.9 1.8E+02 0.004 30.5 6.8 25 722-746 133-157 (284)
338 cd08219 STKc_Nek3 Catalytic do 24.6 1.9E+02 0.0041 30.0 6.7 25 722-746 124-148 (255)
339 COG3140 Uncharacterized protei 24.5 93 0.002 25.9 3.2 44 805-848 2-46 (60)
340 cd05050 PTKc_Musk Catalytic do 24.4 1.6E+02 0.0035 31.2 6.3 25 722-746 154-178 (288)
341 cd06648 STKc_PAK_II Catalytic 24.3 8.7E+02 0.019 25.7 14.5 24 722-745 139-162 (285)
342 cd07837 STKc_CdkB_plant Cataly 24.0 6.1E+02 0.013 26.8 10.7 46 700-745 110-158 (295)
343 PRK09687 putative lyase; Provi 23.9 1.1E+02 0.0025 33.6 5.0 77 325-405 156-234 (280)
344 cd05632 STKc_GRK5 Catalytic do 23.7 8.9E+02 0.019 25.6 13.1 46 701-746 103-150 (285)
345 cd07839 STKc_CDK5 Catalytic do 23.6 1.5E+02 0.0033 31.2 5.9 46 701-746 100-147 (284)
346 cd06644 STKc_STK10_LOK Catalyt 23.3 9E+02 0.019 25.6 13.7 25 722-746 134-158 (292)
347 cd06628 STKc_MAPKKK_Byr2_like 23.3 6.4E+02 0.014 26.1 10.5 25 722-746 130-154 (267)
348 COG2337 MazF Growth inhibitor 23.0 51 0.0011 31.3 1.8 40 730-769 1-40 (112)
349 cd05094 PTKc_TrkC Catalytic do 22.9 2E+02 0.0044 30.6 6.7 25 722-746 147-171 (291)
350 cd07875 STKc_JNK1 Catalytic do 22.6 1.2E+02 0.0027 33.8 5.1 25 722-746 150-174 (364)
351 cd06623 PKc_MAPKK_plant_like C 21.8 8.7E+02 0.019 24.8 13.5 27 721-747 123-149 (264)
352 cd05089 PTKc_Tie1 Catalytic do 21.8 9.8E+02 0.021 25.4 13.5 26 722-747 143-168 (297)
353 TIGR02906 spore_CotS spore coa 21.6 67 0.0014 35.0 2.7 28 717-745 187-214 (313)
354 PF01163 RIO1: RIO1 family; I 21.3 67 0.0014 33.3 2.4 83 648-749 71-157 (188)
355 cd05061 PTKc_InsR Catalytic do 21.3 2.3E+02 0.005 30.1 6.8 24 722-745 143-166 (288)
356 cd06640 STKc_MST4 Catalytic do 21.1 58 0.0012 34.6 2.0 26 721-746 124-149 (277)
357 cd05073 PTKc_Hck Catalytic dom 20.9 9.4E+02 0.02 24.9 12.0 26 721-746 125-150 (260)
358 smart00220 S_TKc Serine/Threon 20.9 8.3E+02 0.018 24.2 11.2 28 721-748 110-137 (244)
359 cd05150 APH Aminoglycoside 3'- 20.9 75 0.0016 33.4 2.8 27 719-745 165-191 (244)
360 cd05052 PTKc_Abl Catalytic dom 20.8 2.3E+02 0.0049 29.7 6.4 26 722-747 128-153 (263)
361 cd06627 STKc_Cdc7_like Catalyt 20.7 8.9E+02 0.019 24.5 12.7 28 721-748 122-149 (254)
362 cd05611 STKc_Rim15_like Cataly 20.6 9.4E+02 0.02 24.7 13.9 26 721-746 120-145 (260)
363 cd06639 STKc_myosinIIIB Cataly 20.6 1.8E+02 0.0039 31.0 5.7 46 701-746 129-176 (291)
364 cd05152 MPH2' Macrolide 2'-Pho 20.5 70 0.0015 35.0 2.5 29 718-746 186-215 (276)
365 TIGR02721 ycfN_thiK thiamine k 20.2 74 0.0016 33.9 2.6 32 718-750 147-178 (256)
366 cd05032 PTKc_InsR_like Catalyt 20.2 2.5E+02 0.0055 29.4 6.7 24 722-745 143-166 (277)
367 cd05095 PTKc_DDR2 Catalytic do 20.1 2.6E+02 0.0057 29.9 6.9 24 722-745 154-177 (296)
No 1
>KOG0906|consensus
Probab=100.00 E-value=1.5e-204 Score=1683.65 Aligned_cols=832 Identities=53% Similarity=0.922 Sum_probs=767.9
Q ss_pred CCeEEEEeecccCccEEEEEeeeecCCCCCchhhhhcCccccccCCccccccceEEEEEEEECCeeeecceecccccCCC
Q psy10441 5 DDTFYYVYSCDVEAKIQIKIGTLEGVTLKPDYEKMLSDPMLKYSGLYQEVCADLVVFCQIFSDGVPLSLPISSSYKSFTN 84 (867)
Q Consensus 5 ~~~~~~~~S~dl~~~v~ikI~~LeG~~~~~~~~~~l~~p~l~~~~~~~~~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~ 84 (867)
.+.|+|||||||++||+|||++|||+.+ +.+|+++..|+++..++++||+||+|..|+|.++|++|+|++|.+
T Consensus 3 ~~~f~f~~Scdl~~~v~vKi~~leg~~~-------~~~p~~~~~~l~~e~~~~l~~~c~v~~~~~~~~lP~~ts~~~~~~ 75 (843)
T KOG0906|consen 3 AEKFSFCYSCDLDINVQVKIGSLEGKRP-------LLNPMLKLIGLFQETSSDLYVTCQVFAEGKPFALPVRTSYKAFSK 75 (843)
T ss_pred cceeEEEeeccCCcceEEEEEeeccccc-------ccChHHHHHhhhcccchhhhheeeeeccCCcccCCccccccccCC
Confidence 6789999999999999999999999877 469999999999999999999999999999999999999999999
Q ss_pred CccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEceecCCcccccceeeEeccCCCCCCCCCCCCCCCC
Q psy10441 85 RWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFGKYGVFRQGMMDLKVWPNQVADPKVPSSTPGKN 164 (867)
Q Consensus 85 ~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~~tp~~~ 164 (867)
+++|||||+|||+|+||+++|+|++|||+++++....+||++|..||+++|.||+|.++|++|+++++||+.+|+
T Consensus 76 ~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~k~~~lk~G~~~l~~~~~~e~d~~~pt~----- 150 (843)
T KOG0906|consen 76 RINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFGKYGMLKQGMQDLKLWPSVEADGSVPTS----- 150 (843)
T ss_pred ccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeecccchHhhhhhhccccccccCCCccCCC-----
Confidence 999999999999999999999999999999999889999999999999999999999999999999999998775
Q ss_pred CCCchHHHHHHHHHHHhhhCCCCCccchhhhhhHHHHHHHHhhhcccCCceEEEEEcCccccCCcceeEEEEccCCcccc
Q psy10441 165 TSSEKEQRETLAKLSKKFHNGHMVKIDWLDRLTFSKIENIKEKEKKASNYLYLMIEFPQIILDGNVHSVIYYERDGDEVY 244 (867)
Q Consensus 165 ~~~~~~e~~rl~~l~~k~~~g~~~~~~WlD~~~~~~ie~~~~~~~~~~~~~~L~iefp~~~~~~~~~~vv~~~~~~~~~~ 244 (867)
.+.+++||+||+|+++||++|++++|||||++||++||+|+++-+..| ++|+|.+..+..+|.+|||+.+.+...
T Consensus 151 ~~~~~~ei~rl~kl~~k~~~G~v~~v~WLD~~t~~~i~~i~~~~k~~S-----m~~l~~v~id~~~~~~v~~~~~~~~~~ 225 (843)
T KOG0906|consen 151 SSTSEDEINRLAKLLNKYRQGHVVSVDWLDRLTFRKIEMINESWKHSS-----MLELPCVKIDFKEYGPVYYEKSMDVST 225 (843)
T ss_pred ccchhhHHHHHHHHHHHHhcCCCccCcccchhhhhhhHhhhhcccccc-----eeEEeEEEeecccceeeEEecCccccc
Confidence 233789999999999999999999999999999999999998777666 677777766666788899988766656
Q ss_pred cccccccccccCChhHHhhhhhhhHHHHHhhhhccCCCCCCCCCChhhHhHHHHhhcCCCCCCCCHHHHHHHHhchhhhh
Q psy10441 245 QFRAHADILTMPDPEILQENLVENKHHKLARSLRSGISDKDAKPNATVRDTLNTIISYPPSNQLTTEEQDLIWKFRFYLS 324 (867)
Q Consensus 245 ~~~~~~~~~~~~d~~~~~~n~~e~k~~~l~rs~~~~~~d~~lkp~~~~~~~L~~i~~~~p~~~L~~~ek~llWk~R~~l~ 324 (867)
+.....+++.|+|||+..+||+|.||++|+||+|+|+.|||+|||.+.||+|+.|++|||.+.||.|||+|||||||||+
T Consensus 226 p~~~~~~~v~v~Dpel~l~~p~E~Kh~~l~Rs~r~g~~drdlKP~~~~rd~L~~Iv~yPps~~lt~eerdlvWkfR~yL~ 305 (843)
T KOG0906|consen 226 PINNGVEIVSVADPELLLESPAEVKHRRLARSLRNGPLDRDLKPNKKARDRLETIVNYPPSQVLTREERDLVWKFRYYLT 305 (843)
T ss_pred ccCCCceEEEecCcccccCChHHHHHHHHHHHhhcCccccccCcchHHHHHHHHHhcCCCccccchhhhhhhhhhhHHHh
Confidence 66677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhhHHhhhccccCCChHHHHHHHHHhhccCCCCHhhHhhccCCCCCCHHHHHHHHHHhccCCchhHHHHHHHHHHHhc
Q psy10441 325 NQKKALTKFLECVNWELQAEARQALDLLDQWAPMDVEDSLQLLSPAFKHSAVRRYAVTRLQQASDEDLLLYLLQLVQALK 404 (867)
Q Consensus 325 ~~p~aL~kfL~sV~W~~~~e~~~a~~lL~~W~~i~~~~ALeLL~~~f~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLk 404 (867)
++|+||+|||+||+|.+++|+++|++||.+|++|+++|||||||+.|.||.||+|||++|+.|+||||++||+|||||||
T Consensus 306 ~~kKALtK~L~sv~W~~~qe~kqal~lM~~W~~id~~dalellss~f~~~sVrayavsrl~~a~deelllYL~qlvqal~ 385 (843)
T KOG0906|consen 306 NNKKALTKFLRSVNWRDPQEVKQALALMDKWEEIDVEDALELLSSYFTHPSVRAYAVSRLKGADDEELLLYLLQLVQALK 385 (843)
T ss_pred hCHHHHHHHHHHhhcCChHHHHHHHHHhhccccchhhhhhhhccccccCHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccc-ccccC-------CCcchhhhhhhhhhccccccccccCCcccchhHHHHHHHHHhcCcchhhHHHHHhhh
Q psy10441 405 YENFEDIMHG-YKKLK-------VPPAIEASVLAEEMSSNVLEYNLDSSHAENMDLTSFLIHRASKSLTLANYFFWYLTI 476 (867)
Q Consensus 405 yE~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~La~fLi~ra~~n~~i~~~l~W~L~~ 476 (867)
||........ .+..+ .++..+++..+ .++.....+.+......|+||+|||+||+.|+.+|+|||||+++
T Consensus 386 ye~~~~~p~~~~~~~v~s~~~~si~s~~t~pl~s--~ss~~~ts~tke~p~~~s~La~fLi~Ral~n~~l~nflywyl~~ 463 (843)
T KOG0906|consen 386 YENGQQLPEEGNPVPVVSEREGSIPSVATTPLES--LSSRDMTSTTKEAPKAASDLATFLISRALVNPQLANFLYWYLKV 463 (843)
T ss_pred HHhhccCCcccCcCcccccccccccccccCcccc--ccCCCccccccccccccchHHHHHHHHHhcCccccceEEEEEEE
Confidence 9995321110 00000 01111111000 01111111112222344699999999999999999999999999
Q ss_pred hccCcccchhhhhHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhHHHhhccCchhhhHHHHHHHhh
Q psy10441 477 ESEDQDFTIKQDIRVREMYANVKNIFLQTLQHGPSESHKINSYLIKQQSFIEKLVNLVKIVARESGNRKRKIDRLQALLA 556 (867)
Q Consensus 477 e~~~~~~~~~~~~~~~~~y~~v~~~~~~~l~~~~~~~~~~~~~l~~Q~~~~~~L~~i~~~v~~~~~~~~~k~e~L~~~l~ 556 (867)
|+|+.. ..++|..++..|++++.++ .+++.++..|..|+.|+++|..|++++++.++++++|+|+|+.+|.
T Consensus 464 e~Ed~~--------~~kry~si~~~f~~~l~K~-~d~r~~~~~L~~Q~~lVd~L~~i~~~v~~~~g~~~kK~e~L~~lL~ 534 (843)
T KOG0906|consen 464 EIEDTP--------YSKRYLSIMSSFLEALSKR-PDGRAIRGSLEAQQALVDELRRIMKEVKRGSGRRKKKIERLRGLLG 534 (843)
T ss_pred EecCCh--------HHHHHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHh
Confidence 999874 3557999999999999985 4577899999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCcccCCCCcEEEEEEeeCceeeecCCCcceEEEEEecCCC-eEEEEEeeCCchhhHHHHHHHHHHHH
Q psy10441 557 DSETFKFNFTNFEPLPLPLDPNVYIKGIIPEKATLFKSNLMPSRLTFLTTTGT-EYVAIFKHGDDLRQDQLILQIITLMD 635 (867)
Q Consensus 557 ~~~~~~~~~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dG~-~~~~i~K~GDDLRqD~l~lQli~lmd 635 (867)
+.. +.++..+.++++|++|++.|.||+|+.+++|+|++.|++|+|++.+|. .|.+|||.||||||||+++|+|++||
T Consensus 535 ~~~--~~~l~~~~~i~lpldp~v~i~~Iip~t~~~FkSsl~Pl~l~fkt~~g~g~y~vIFK~GDDLrQDqlV~Qii~lMd 612 (843)
T KOG0906|consen 535 DHK--HMNLLDVRLIALPLDPDVLIKGIIPDTASLFKSSLMPLKLTFKTDDGGGKYPVIFKKGDDLRQDQLVLQIIRLMD 612 (843)
T ss_pred ccc--ccccccceeeccCCCCCceEeeecCchhhhhhhccCceeEEEEecCCCCceeEEEecCcchhHHHHHHHHHHHHH
Confidence 875 456677789999999999999999999999999999999999999987 99999999999999999999999999
Q ss_pred HHHHhCCCCCcccccEEEEecCCcceeeeecCccHHHHHhhcCcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHH
Q psy10441 636 KLLRSENLDLKLTPYRVLATNTKHGFVQFVDSFPVAEVLATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVI 715 (867)
Q Consensus 636 ~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~ 715 (867)
+|++++++||+++||+|+|||+..|+||+|++.++++|+.++++|..|++++.|++.+++++++++++||++|||||||+
T Consensus 613 ~LLkkenlDLkLtpYkVLatg~~eG~vefI~s~~la~Ils~~~~I~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVi 692 (843)
T KOG0906|consen 613 RLLKKENLDLKLTPYKVLATGPKEGFVEFIPSKPLARILSEYHSILMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVI 692 (843)
T ss_pred HHhccccccccceeeEEeccCCCcccEEeecCCcHHHHHHHHHHHHHHHHhhCCCcCCCCCCChhHHHHHHHhhccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCcceeEecCCCEEEEeeccccCCCCCCCCCcccccHHHHHHhCCCCchhHHHHHHHHHHHHHHHhcChhH
Q psy10441 716 TYILGVGDRHFDNLLLTTSGKLFHIDFGYILGRDPKPLPPPMKLSKEMVEAMGGINSEHYHEFRKQCYTAFLHLRRHSNL 795 (867)
Q Consensus 716 tYiLGIGDRH~dNIli~~tG~lfHIDFG~ilg~~~k~e~vPFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~l 795 (867)
||||||||||+||+|++++||+||||||||||++|||+++|++|+++|+++|||.+++.|++|+.+|+.||++||+++++
T Consensus 693 tYILGvGDRhldNLllT~dGk~FHiDFgyIlGRDPKP~pp~MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRRssnl 772 (843)
T KOG0906|consen 693 TYILGVGDRHLDNLLLTKDGKLFHIDFGYILGRDPKPFPPPMKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRRSSNL 772 (843)
T ss_pred eeeecccCCCcCceEEccCCcEEEEeeeeeccCCCCCCCCccccCHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q psy10441 796 ILNLFTLMVDASVPDIALEPDKAVKKVQDKFRLDLGDEEAVHYLQNLIDLSVTAVMAALVEQLHKFAQYWR 866 (867)
Q Consensus 796 il~l~~lml~~~ip~~~~~~~~~i~~l~~~l~l~lseeeA~~~~~~lI~~s~~s~~t~i~d~~h~~aq~~r 866 (867)
|+|||++|++++||+|+.+|+++|.++++||+|+||||+|.+||+++|++|++|++|.+.|.||++|||||
T Consensus 773 IlnLf~LM~~~~IPDia~dp~k~I~kvqeRfrLdmSde~A~~~fq~lI~~SV~AL~~~v~d~ih~~aqy~R 843 (843)
T KOG0906|consen 773 ILNLFSLMADANIPDIAFDPNKAILKVQERFRLDMSDEAATKHFQKLINESVNALFPQVVDLIHRLAQYWR 843 (843)
T ss_pred HHHHHHHHhcCCCCceeeCcchhhHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998
No 2
>KOG0904|consensus
Probab=100.00 E-value=1.1e-146 Score=1251.64 Aligned_cols=670 Identities=31% Similarity=0.549 Sum_probs=577.5
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecC----------------CC
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGG----------------AT 118 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~----------------~~ 118 (867)
...++|+++||||+++||..++|+.+++.+...||+|+.|+|+++||||+|+|||.||.+.. ++
T Consensus 362 ~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v~~~~~s~~~s~~~~~kk~k~ 441 (1076)
T KOG0904|consen 362 DLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAVKAKAKSKKNSAESTKKKSKK 441 (1076)
T ss_pred ceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEeechhccccccchhhhhcccc
Confidence 36889999999999999999999999999999999999999999999999999999999842 13
Q ss_pred CceeEEEEEEEceecCCcccccceeeEeccCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhhCCCCCccchhhhhhH
Q psy10441 119 QLIPIGGTCISLFGKYGVFRQGMMDLKVWPNQVADPKVPSSTPGKNTSSEKEQRETLAKLSKKFHNGHMVKIDWLDRLTF 198 (867)
Q Consensus 119 ~~~~vG~t~i~LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~~tp~~~~~~~~~e~~rl~~l~~k~~~g~~~~~~WlD~~~~ 198 (867)
++.|+||+|+.|||++++||+|.+.|++||.. +++.. +++ ++.|.+.
T Consensus 442 ~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~~~-p~~~~----------------e~l------~p~Gt~~---------- 488 (1076)
T KOG0904|consen 442 EHCPLAWVNLMLFDHKDQLRTGEYVLHMWPSV-PDELG----------------ELL------NPKGTVR---------- 488 (1076)
T ss_pred ccCceEEEeeeeeechhhhhcCceEEEecCCC-Cchhh----------------hhc------CCCCccc----------
Confidence 56799999999999999999999999999963 23221 111 4456554
Q ss_pred HHHHHHHhhhcccCCceEEEEEcCccccCCcceeEEEEccCCcccccccccccccccCChhHHhhhhhhhHHHHHhhhhc
Q psy10441 199 SKIENIKEKEKKASNYLYLMIEFPQIILDGNVHSVIYYERDGDEVYQFRAHADILTMPDPEILQENLVENKHHKLARSLR 278 (867)
Q Consensus 199 ~~ie~~~~~~~~~~~~~~L~iefp~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~d~~~~~~n~~e~k~~~l~rs~~ 278 (867)
.++...+++.+.|-||..-.. + +||+.. .++.++....++
T Consensus 489 --------~Np~ke~~~~~~i~f~~~~~~----~-~~yp~~-------------~k~~~~~~~~~~-------------- 528 (1076)
T KOG0904|consen 489 --------TNPNKENAASLSIKFPEYCPH----P-VYYPKL-------------EKILEPAADRER-------------- 528 (1076)
T ss_pred --------CCCCcccchheeeeccccCCC----C-ccCCch-------------hhccchhhhhhh--------------
Confidence 455566778899999987322 2 333221 122333221111
Q ss_pred cCCCCCCCCCChhhHhHHHHhhcCCCCCCCCHHHHHHHHhchhhhh-hchhhHHhhhccccCCChHHHHHHHHHhhccCC
Q psy10441 279 SGISDKDAKPNATVRDTLNTIISYPPSNQLTTEEQDLIWKFRFYLS-NQKKALTKFLECVNWELQAEARQALDLLDQWAP 357 (867)
Q Consensus 279 ~~~~d~~lkp~~~~~~~L~~i~~~~p~~~L~~~ek~llWk~R~~l~-~~p~aL~kfL~sV~W~~~~e~~~a~~lL~~W~~ 357 (867)
....+++.--..+.+.+|++|+..+|+.+|+++||++||.+|+++. ..|++|||+|.||.|+.+++|+|+|.||..|+|
T Consensus 529 ~~~~~~~~~~~e~~~kqLk~i~~~d~l~el~e~ekd~lW~~R~~~~~~~Pe~L~kLllsvkW~~redvAqmy~LL~~Wp~ 608 (1076)
T KOG0904|consen 529 VNRLDRESCGREKLRKQLKEILARDPLSELTEQEKDLLWHLRHEILKHFPEALPKLLLSVKWNKREDVAQMYYLLKDWPP 608 (1076)
T ss_pred hccchhhhcccchhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHhChHHHHHHHheeeeccHHHHHHHHHHHhhCCC
Confidence 1112222222235688999999999999999999999999999985 669999999999999999999999999999999
Q ss_pred CCHhhHhhccCCCCCCHHHHHHHHHHhccCCchhHHHHHHHHHHHhcccccccccccccccCCCcchhhhhhhhhhcccc
Q psy10441 358 MDVEDSLQLLSPAFKHSAVRRYAVTRLQQASDEDLLLYLLQLVQALKYENFEDIMHGYKKLKVPPAIEASVLAEEMSSNV 437 (867)
Q Consensus 358 i~~~~ALeLL~~~f~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (867)
++|+.||||||.+|+|+.||+|||+||++++||+|++||+|||||||||+|+|
T Consensus 609 l~v~~aleLLd~nypD~~VR~fAV~~L~~Lsdd~l~~YLLqLVQalKyEpyld--------------------------- 661 (1076)
T KOG0904|consen 609 LSVELALELLDCNYPDPNVRAFAVRCLEQLSDDDLLQYLLQLVQALKYEPYLD--------------------------- 661 (1076)
T ss_pred CCHHHHHHHhcCCCCcHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhccchhH---------------------------
Confidence 99999999999999999999999999999999999999999999999999997
Q ss_pred ccccccCCcccchhHHHHHHHHHhcCcchhhHHHHHhhhhccCcccchhhhhHHHHHHHHHHHHHHHHhccCCCchHHHH
Q psy10441 438 LEYNLDSSHAENMDLTSFLIHRASKSLTLANYFFWYLTIESEDQDFTIKQDIRVREMYANVKNIFLQTLQHGPSESHKIN 517 (867)
Q Consensus 438 ~~~~~~~~~~~~s~La~fLi~ra~~n~~i~~~l~W~L~~e~~~~~~~~~~~~~~~~~y~~v~~~~~~~l~~~~~~~~~~~ 517 (867)
|.|++||++||++|.+|||||||+|++|++.++ ...+ ...++|++++||. .+.
T Consensus 662 ------------s~L~rFLL~RAL~N~RIGHflFWhLRSEm~~~~--------~~~R----fgllLEaYlRGc~---~hl 714 (1076)
T KOG0904|consen 662 ------------SALVRFLLKRALRNQRIGHFLFWHLRSEMAQPS--------VQQR----FGLLLEAYLRGCT---HHL 714 (1076)
T ss_pred ------------hHHHHHHHHHHhhccccchhhhhhHHHHhccHH--------HHHH----HHHHHHHHHhccH---HHH
Confidence 999999999999999999999999999998763 2333 4567888999985 789
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhc--cCchhhhHHHHHHHhhccccccccccCCCCcccCCCCcEEEEEEeeCceeeecCC
Q psy10441 518 SYLIKQQSFIEKLVNLVKIVARE--SGNRKRKIDRLQALLADSETFKFNFTNFEPLPLPLDPNVYIKGIIPEKATLFKSN 595 (867)
Q Consensus 518 ~~l~~Q~~~~~~L~~i~~~v~~~--~~~~~~k~e~L~~~l~~~~~~~~~~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~ 595 (867)
+.|.+|.+.+++|.++...++.. +.++++..+.|+..+.+.. +...++.+..|+||+.++.++.+|+|+||+||
T Consensus 715 k~l~kQve~l~kLk~lt~~iK~~~~K~~~~~~~~~l~~~lr~~~----~~~~lq~l~sPLdP~~~lgel~iekckvM~Sk 790 (1076)
T KOG0904|consen 715 KVLTKQVEALEKLKKLTDLIKLSAEKEDVSQVKEQLKLCLRQLA----NSEALQNLQSPLDPSLKLGELIIEKCKVMDSK 790 (1076)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhHH----HHHHHHhccCCCChhhhhcchhhhhhhhhhcc
Confidence 99999999999999988777632 2233333567787777765 44556789999999999999999999999999
Q ss_pred CcceEEEEEecCC---CeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcceeeeec-CccHH
Q psy10441 596 LMPSRLTFLTTTG---TEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVD-SFPVA 671 (867)
Q Consensus 596 ~~P~~l~f~~~dG---~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~ 671 (867)
++|+||.|.+.+- ....+|||+|||||||||++||+++||.||+.+|+|++|.||.|+|||...||||+|+ +.|++
T Consensus 791 krPLwl~~~Np~~~s~~~v~iIFKNGDDLRQDMLtLQmLriMd~iWk~~glDlrm~PYgcls~Gd~iGlIEVV~~s~TIa 870 (1076)
T KOG0904|consen 791 KRPLWLVFENPDAGSNLSVGIIFKNGDDLRQDMLTLQMLRIMDNIWKTEGLDLRMLPYGCLSTGDRIGLIEVVRNSETIA 870 (1076)
T ss_pred CCceEEEecCCCcccCCceeEEEcCCchHHHHHHHHHHHHHHHHHHHhcCCCeeccccccccccceeeeEEEecCchhhh
Confidence 9999999987752 3689999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHHhhc-----------CcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEEEE
Q psy10441 672 EVLATE-----------GSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHI 740 (867)
Q Consensus 672 ~I~~~~-----------~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lfHI 740 (867)
+|+.+. +.+.+|++.+||.+.. + .+|.+.|+.||||||||||||||||||+|||||.+||++|||
T Consensus 871 ~IQ~~~g~~~at~afn~~~L~~WLKekNp~e~k-l---d~AIe~Ft~SCAGYcVATyVLGIgDRHsDNIMvke~GqlFHI 946 (1076)
T KOG0904|consen 871 NIQLNTGNMAATAAFNKDALLNWLKEKNPGEDK-L---DAAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVKETGQLFHI 946 (1076)
T ss_pred hhhhccccceeeccCCHHHHHHHHhhcCchHHH-H---HHHHHHHHHhhccceeeeeeecccccccCceEEeccCcEEEE
Confidence 999765 3588999999987542 2 369999999999999999999999999999999999999999
Q ss_pred eeccccCCCC-----CCCCCcccccHHHHHHhC--CC-Cchh-HHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCC
Q psy10441 741 DFGYILGRDP-----KPLPPPMKLSKEMVEAMG--GI-NSEH-YHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDI 811 (867)
Q Consensus 741 DFG~ilg~~~-----k~e~vPFrLT~~mv~~mG--g~-~~~~-~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~ 811 (867)
|||||||+++ +.|+|||.||++|+.+|+ +. +++. |+.|+++|++||.+||+|+++|++||++|+.+|+|++
T Consensus 947 DFGHiLGh~KsKlGi~RERvPFvLT~dFl~VI~~G~~~~~~~eF~kFq~~C~~AYl~lr~H~nLfi~LFsmMl~~glPEL 1026 (1076)
T KOG0904|consen 947 DFGHILGHFKSKLGINRERVPFVLTYDFLHVIQKGKTKNSEKEFQKFQELCEKAYLALRRHGNLFISLFSMMLGTGLPEL 1026 (1076)
T ss_pred EhhhhhccchhhcCcccccCceEeecceeeeecccCCCCchhHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhcCCCcc
Confidence 9999999986 358999999999999995 22 3444 9999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHH
Q psy10441 812 ALEPDKAVKKVQDKFRLDLGDEEAVHYLQNLIDLSV-TAVMAALVEQLHKF 861 (867)
Q Consensus 812 ~~~~~~~i~~l~~~l~l~lseeeA~~~~~~lI~~s~-~s~~t~i~d~~h~~ 861 (867)
++..| |+|+++.|.++.|||||.+||...+++++ ++|.|+++=.+|++
T Consensus 1027 ss~~D--i~ylrdtL~l~ktEEeA~k~F~~k~~eA~~~sWtTk~NW~~H~v 1075 (1076)
T KOG0904|consen 1027 SSKKD--IDYLRDTLALGKTEEEALKYFRDKFEEALRGSWTTKVNWLFHNV 1075 (1076)
T ss_pred ccHHH--HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCceeeehhhhhhc
Confidence 98766 99999999999999999999999999998 56999999999975
No 3
>KOG0905|consensus
Probab=100.00 E-value=1.8e-131 Score=1144.76 Aligned_cols=661 Identities=31% Similarity=0.532 Sum_probs=575.1
Q ss_pred ccccceEEEEEEEECCeeeecceecc----cccCCCCccccceEEeccccCCcCccceEEEEEEEecCCC----------
Q psy10441 53 EVCADLVVFCQIFSDGVPLSLPISSS----YKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGAT---------- 118 (867)
Q Consensus 53 ~~~~~l~V~~ql~~g~~~L~~pv~T~----~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~---------- 118 (867)
+..+++|..|+|+|||+.|+.|++|. ++.|..++.|++||+||+.||+|||+++|++|||+...+.
T Consensus 653 s~yedfyl~~~l~hg~k~l~~p~~t~k~~~~~~~F~ri~~d~~i~Fp~~i~~lPREt~L~~tL~G~~~~s~gan~d~n~e 732 (1639)
T KOG0905|consen 653 SQYEDFYLSCSLSHGTKDLDKPNQTPKTITSKHFFPRIPWDLYIKFPRQICQLPRETRLTVTLFGIVRASAGANADQNKE 732 (1639)
T ss_pred hhhhhheEEEeeecCceeccccccccccccccccccccchhhhhcchHHHhhCChhheEEEEEeeeecCCCCCCchhccc
Confidence 45789999999999999999999885 5667778999999999999999999999999999866431
Q ss_pred --CceeEEEEEEEceecCCcccccceeeEeccCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhhCCCCCccchhhhh
Q psy10441 119 --QLIPIGGTCISLFGKYGVFRQGMMDLKVWPNQVADPKVPSSTPGKNTSSEKEQRETLAKLSKKFHNGHMVKIDWLDRL 196 (867)
Q Consensus 119 --~~~~vG~t~i~LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~~tp~~~~~~~~~e~~rl~~l~~k~~~g~~~~~~WlD~~ 196 (867)
....+||+++||||++..+++|+.-|.+||........+..+++ +..
T Consensus 733 rr~~~~LGw~slpLfdf~~~m~cG~~ll~lw~~~~~~~l~~~~~~~----------------------~~q--------- 781 (1639)
T KOG0905|consen 733 RRVPEALGWCSLPLFDFRRFMTCGPLLLPLWPSKKQNMLKPFGAYP----------------------YHQ--------- 781 (1639)
T ss_pred ccchhhhheeeccccchhhhhcccchhhccccCCCCcCCCCCCCCC----------------------ccC---------
Confidence 12468999999999999999999999999976644333222111 001
Q ss_pred hHHHHHHHHhhhcccCCceEEEEEcCccccCCcceeEEEEccCCcccccccccccccccCChhHHhhhhhhhHHHHHhhh
Q psy10441 197 TFSKIENIKEKEKKASNYLYLMIEFPQIILDGNVHSVIYYERDGDEVYQFRAHADILTMPDPEILQENLVENKHHKLARS 276 (867)
Q Consensus 197 ~~~~ie~~~~~~~~~~~~~~L~iefp~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~d~~~~~~n~~e~k~~~l~rs 276 (867)
+ +...|.|+||...+ .+.|.++.++.. .+| |+.++
T Consensus 782 --------------p-~~~iLqidfp~~~~-----ei~fp~~~~d~~----------~~p-------------~~df~-- 816 (1639)
T KOG0905|consen 782 --------------P-DDPILQIDFPIWGF-----EIYFPNPQEDRQ----------CIP-------------HYDFA-- 816 (1639)
T ss_pred --------------C-CCceEEEecCCCCc-----eEecCCcccccc----------ccc-------------ccchh--
Confidence 1 23789999999754 344433222210 111 11111
Q ss_pred hccCCCCCCCCCChhhHhHHHHhhcCCCCCCCCHHHHHHHHhchhhhhhchhhHHhhhccc-cCCChHHHHHHHHHhhcc
Q psy10441 277 LRSGISDKDAKPNATVRDTLNTIISYPPSNQLTTEEQDLIWKFRFYLSNQKKALTKFLECV-NWELQAEARQALDLLDQW 355 (867)
Q Consensus 277 ~~~~~~d~~lkp~~~~~~~L~~i~~~~p~~~L~~~ek~llWk~R~~l~~~p~aL~kfL~sV-~W~~~~e~~~a~~lL~~W 355 (867)
.+..++.+.|.+|+++..+..|++|+|+++|.+|+||.++|.|||++|.|. +|+.. .+.++|.||++|
T Consensus 817 ----------tl~~e~q~~Lldl~qkq~~~~ls~edk~~lWekR~yc~~~p~aLPlVL~Sap~W~~~-~l~~~y~lL~~W 885 (1639)
T KOG0905|consen 817 ----------TLDIETQEKLLDLIQKQSTLTLSTEDKDLLWEKRLYCTNEPNALPLVLASAPSWDWG-NLMDVYQLLHQW 885 (1639)
T ss_pred ----------hhhHHHHHHHHHHHhhccccccchhhHHHHHHHhhhhcCCCchhHHHHhcCCCCchh-hHHHHHHHHHhc
Confidence 234567888999999999999999999999999999999999999999986 89875 688999999999
Q ss_pred CCCCHhhHhhccCCCCCCHHHHHHHHHHhccCCchhHHHHHHHHHHHhcccccccccccccccCCCcchhhhhhhhhhcc
Q psy10441 356 APMDVEDSLQLLSPAFKHSAVRRYAVTRLQQASDEDLLLYLLQLVQALKYENFEDIMHGYKKLKVPPAIEASVLAEEMSS 435 (867)
Q Consensus 356 ~~i~~~~ALeLL~~~f~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (867)
+++.|.+|||||.++|+|.+||+.||++|.+++||||+.||||||||||||.|.+
T Consensus 886 a~l~Pl~ALelL~~kfPDqeVR~~AVqwi~~ls~DeL~d~LPQlVQALK~E~yl~------------------------- 940 (1639)
T KOG0905|consen 886 APLRPLIALELLLPKFPDQEVRAHAVQWIARLSNDELLDYLPQLVQALKFELYLK------------------------- 940 (1639)
T ss_pred cccCHHHHHHhhcccCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcc-------------------------
Confidence 9999999999999999999999999999999999999999999999999999986
Q ss_pred ccccccccCCcccchhHHHHHHHHHhcCcchhhHHHHHhhhhccCcccchhhhhHHHHHHHHHHHHHHHHhccCCCchHH
Q psy10441 436 NVLEYNLDSSHAENMDLTSFLIHRASKSLTLANYFFWYLTIESEDQDFTIKQDIRVREMYANVKNIFLQTLQHGPSESHK 515 (867)
Q Consensus 436 ~~~~~~~~~~~~~~s~La~fLi~ra~~n~~i~~~l~W~L~~e~~~~~~~~~~~~~~~~~y~~v~~~~~~~l~~~~~~~~~ 515 (867)
|+|++|||.||+.|.++||++||.|+-.+++. .+.-+|+.++..++.. |+ +.
T Consensus 941 --------------S~Lv~FLL~rsl~sl~~ah~lYWlLk~~l~d~--------qfs~rYq~ll~aLl~~----~g--k~ 992 (1639)
T KOG0905|consen 941 --------------SALVQFLLSRSLVSLQFAHELYWLLKDALDDS--------QFSLRYQNLLAALLDC----CG--KN 992 (1639)
T ss_pred --------------CHHHHHHHHHHhcchHHHHHHHHHHhhccccc--------eeehHHHHHHHHHHHH----hC--HH
Confidence 99999999999999999999999999888764 3456787777666543 32 57
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhccCchhhhHHHHHHHhhccccccccccCCCCcccCCCCcEEEEEEeeCceeeecCC
Q psy10441 516 INSYLIKQQSFIEKLVNLVKIVARESGNRKRKIDRLQALLADSETFKFNFTNFEPLPLPLDPNVYIKGIIPEKATLFKSN 595 (867)
Q Consensus 516 ~~~~l~~Q~~~~~~L~~i~~~v~~~~~~~~~k~e~L~~~l~~~~~~~~~~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~ 595 (867)
.++++.+|.++++.|..|++.|+..++..++ +.|+.-+.+.+. .+.....+.||+.|...++||.++.|.+|+|+
T Consensus 993 L~~ef~~Q~~Lv~~L~~iae~Vr~as~s~Rq--~vL~~~l~~v~~---ff~~n~tcrLPL~Pal~vkGv~i~~CSyFnSN 1067 (1639)
T KOG0905|consen 993 LREEFKKQHKLVNELGSIAEDVRSASGSARQ--HVLRTGLGRVDS---FFLQNNTCRLPLCPALDVKGVRIRECSYFNSN 1067 (1639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHH--HHHHHhHHHHHH---HHHhCCceecccCchheeccccccccccccCC
Confidence 8999999999999999999999988876644 345555554431 22223468999999999999999999999999
Q ss_pred CcceEEEEEe--cCCCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcceeeeec-CccHHH
Q psy10441 596 LMPSRLTFLT--TTGTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVD-SFPVAE 672 (867)
Q Consensus 596 ~~P~~l~f~~--~dG~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~ 672 (867)
..|++|+|.| .+|+.+++|||+||||||||++||||++||+||.++|||++|.+|+|+|||.+.||||.|+ +.||++
T Consensus 1068 A~PLKitFvnadp~geni~iIfK~gDDLRQDml~lQmI~iMdkIWl~egLDlrMViFrc~stG~~rgMvElVp~a~TLrK 1147 (1639)
T KOG0905|consen 1068 ALPLKITFVNADPLGENISIIFKCGDDLRQDMLVLQMIRIMDKIWLQEGLDLRMVIFRCLSTGYDRGMVELVPNAETLRK 1147 (1639)
T ss_pred CcceEEEEecCCCccccceeeeecCchHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeecccccccceeecccHHHHHH
Confidence 9999999999 5699999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHhhcC--------cHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEEEEeecc
Q psy10441 673 VLATEG--------SIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHIDFGY 744 (867)
Q Consensus 673 I~~~~~--------~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lfHIDFG~ 744 (867)
|+.++| .|.+||.++||++. .| .+|.+||++|||||||+|||||||||||||||++++||+||||||-
T Consensus 1148 IQve~GltGsfkD~pla~WL~KhNp~e~-eY---ekA~eNFiySCAG~cVaTYVLGIcDRHNDNIMl~~sGHmFHIDFGK 1223 (1639)
T KOG0905|consen 1148 IQVEEGLTGSFKDRPLAKWLMKHNPSEF-EY---EKAVENFIYSCAGWCVATYVLGICDRHNDNIMLTKSGHMFHIDFGK 1223 (1639)
T ss_pred HHHHhccccccccchHHHHHHhcCCCHH-HH---HHHHHHHHHhcccceeeeEeeecccccCCceEEeccCcEEEEehhh
Confidence 999874 58999999999964 34 3699999999999999999999999999999999999999999999
Q ss_pred ccCCC-----CCCCCCcccccHHHHHHh--CCCCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCCCCCchH
Q psy10441 745 ILGRD-----PKPLPPPMKLSKEMVEAM--GGINSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIALEPDK 817 (867)
Q Consensus 745 ilg~~-----~k~e~vPFrLT~~mv~~m--Gg~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~~~~~~~ 817 (867)
++|+. -|..++||+||.+|.+++ |+..+..|+.|.++||+||+++|||+++++||+.+|+.+|||+++...|
T Consensus 1224 FLGhaQMfg~fKRDRaPFVfTSdMayvINgG~kpt~~fq~FVDlCCrAyNiiRK~t~lllnlL~lM~~agiPeln~i~d- 1302 (1639)
T KOG0905|consen 1224 FLGHAQMFGGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKNTNLLLNLLRLMACAGIPELNSIQD- 1302 (1639)
T ss_pred hcchHHHhcccccccCCeEEeccchhhhcCCCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCccchhh-
Confidence 99986 367899999999999999 4467889999999999999999999999999999999999999987655
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy10441 818 AVKKVQDKFRLDLGDEEAVHYLQNLIDLSVTAVMAALVEQLHKFAQY 864 (867)
Q Consensus 818 ~i~~l~~~l~l~lseeeA~~~~~~lI~~s~~s~~t~i~d~~h~~aq~ 864 (867)
++||++.|+++.||.||..+|.++|++|+++++|++++++|++||+
T Consensus 1303 -LkYV~~aL~pq~td~eAT~~FTkmIqsSLgs~~tklNffiHnLAQm 1348 (1639)
T KOG0905|consen 1303 -LKYVYNALRPQDTDAEATVQFTKMIQSSLGSAFTKLNFFIHNLAQM 1348 (1639)
T ss_pred -HHHHHhhcCcccCChhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997
No 4
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=3e-88 Score=746.76 Aligned_cols=346 Identities=61% Similarity=1.038 Sum_probs=330.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhccCchhhhHHHHHHHhhccccccccccCCCCcccCCCCcEEEEEEeeCceeeecCCCc
Q psy10441 518 SYLIKQQSFIEKLVNLVKIVARESGNRKRKIDRLQALLADSETFKFNFTNFEPLPLPLDPNVYIKGIIPEKATLFKSNLM 597 (867)
Q Consensus 518 ~~l~~Q~~~~~~L~~i~~~v~~~~~~~~~k~e~L~~~l~~~~~~~~~~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~~~ 597 (867)
+.|.+|.+|+++|.++++.++..++.+.+|.+.|++.|++... ......++++||+||++.|.+|.+++|+||+|+++
T Consensus 2 ~~l~~q~~~~~~L~~i~~~~k~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~lP~dp~~~i~~i~~~~~~v~~S~~~ 79 (350)
T cd00896 2 QTLSRQIEFVDRLRKLLKELRSSKIDRPKKIEKLKQLLSSIEY--ELLLDFEPIPLPLDPSIEITGIIPEESSVFKSALM 79 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHhcccc--ccccCCCCCcCCCCCCeEEEEEecCceEEeccccC
Confidence 4688999999999999999988777777889999999998651 01223478999999999999999999999999999
Q ss_pred ceEEEEEecCC---CeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcceeeeecCccHHHHH
Q psy10441 598 PSRLTFLTTTG---TEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVDSFPVAEVL 674 (867)
Q Consensus 598 P~~l~f~~~dG---~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~s~tl~~I~ 674 (867)
|++|+|.++|| +.|.+|||.|||||||+++||++++||+||+++++|++++||+|+|||+++||||||++.|+++|+
T Consensus 80 P~~l~f~~~dg~~~~~~~~i~K~gDDLRqD~l~~Ql~~lm~~il~~~~ldl~l~~Y~Vip~~~~~GlIE~V~s~tl~~i~ 159 (350)
T cd00896 80 PLKLTFKTEKGNEEGEYPVIFKVGDDLRQDQLVIQIISLMDRLLKKENLDLKLTPYKVLATSPTDGLVEFIPSVTLASIL 159 (350)
T ss_pred ceEEEEEeCCCCCCceEEEEecCCcchhHhHHHHHHHHHHHHHHHhCCCCceeEEEEEEEcCCCCcceEEEecccHHHHH
Confidence 99999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEEEEeeccccCCCCCCCC
Q psy10441 675 ATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHIDFGYILGRDPKPLP 754 (867)
Q Consensus 675 ~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lfHIDFG~ilg~~~k~e~ 754 (867)
++++.+.+|++++++++..++++..+|++||++|||||||+||||||||||+|||||+++||+|||||||+||++|+|++
T Consensus 160 ~~~~~l~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~~~G~~~HIDFG~ilg~~p~~~~ 239 (350)
T cd00896 160 KKYGGILNYLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLTKDGKLFHIDFGYILGRDPKPFP 239 (350)
T ss_pred HHHHHHHHHHHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEcCCCCEEEEEhHHhhCCCCCCCC
Confidence 99999999999999988777666678999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccHHHHHHhCCCCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHcCCCCCHHH
Q psy10441 755 PPMKLSKEMVEAMGGINSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIALEPDKAVKKVQDKFRLDLGDEE 834 (867)
Q Consensus 755 vPFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~~~~~~~~i~~l~~~l~l~lseee 834 (867)
||||||++|+++|||.++++|+.|+.+|+.||++||+|+++|++++++|+++++||++.++++++.++++||++++||+|
T Consensus 240 ~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~rf~l~~s~~e 319 (350)
T cd00896 240 PPMKLCKEMVEAMGGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALDPDKAILKVQEKFRLDLSDEE 319 (350)
T ss_pred CCeeccHHHHHHhCCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccCHHHHHHHHHHHhCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q psy10441 835 AVHYLQNLIDLSVTAVMAALVEQLHKFAQYW 865 (867)
Q Consensus 835 A~~~~~~lI~~s~~s~~t~i~d~~h~~aq~~ 865 (867)
|.+||+++|++|+++++|+++|++|+|||||
T Consensus 320 a~~~~~~lI~~s~~~~~t~~~d~~h~~aq~~ 350 (350)
T cd00896 320 AIKHFQNLINDSVNALFPVVVDRLHAWAQYW 350 (350)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999
No 5
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=2.3e-88 Score=741.21 Aligned_cols=336 Identities=32% Similarity=0.598 Sum_probs=309.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhccCchhhhHHHHHHHhhccccccccccCCCCcccCCCCcEEEEEEeeCceeeecCCC
Q psy10441 517 NSYLIKQQSFIEKLVNLVKIVARESGNRKRKIDRLQALLADSETFKFNFTNFEPLPLPLDPNVYIKGIIPEKATLFKSNL 596 (867)
Q Consensus 517 ~~~l~~Q~~~~~~L~~i~~~v~~~~~~~~~k~e~L~~~l~~~~~~~~~~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~~ 596 (867)
|+++.+|++++++|.++++.|+..+. .++.+.|++.|++.. ..+...++++||+||++.|.||.+++|+||+|++
T Consensus 1 ~~~~~~Q~~~~~~L~~i~~~vk~~~~--~~r~~~l~~~L~~~~---~~~~~~~~~~lPldP~~~v~~i~~~~~~v~~S~~ 75 (354)
T cd00895 1 REEFDRQCWLVNVLAKLAQQVREAAP--SARQGILREGLEEVK---QFFSINGSCRLPLSPSLLVKGIVPRDCSYFNSNA 75 (354)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHhhh---hhccCCCCCcCCCCCCeEEEEEEcCceEEecccC
Confidence 35789999999999999999987653 345688999998764 1122236799999999999999999999999999
Q ss_pred cceEEEEEecC--CCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcceeeeec-CccHHHH
Q psy10441 597 MPSRLTFLTTT--GTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVD-SFPVAEV 673 (867)
Q Consensus 597 ~P~~l~f~~~d--G~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~I 673 (867)
+|+||+|++.| |+.|.+|||.|||||||++++|+|++||+||+++|+|++++||+|+|||+++||||+|+ +.|+++|
T Consensus 76 ~Pl~l~f~~~d~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldl~l~pY~vl~tg~~~G~IE~V~ns~tl~~I 155 (354)
T cd00895 76 VPLKLSFQNVDPLGENIRVIFKCGDDLRQDMLTLQMIRIMNKIWVQEGLDMRMVIFRCFSTGRGRGMVEMIPNAETLRKI 155 (354)
T ss_pred CCeEEEEEecCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCCceEEEEeCChhhHHHH
Confidence 99999999998 89999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HhhcC--------cHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEEEEeeccc
Q psy10441 674 LATEG--------SIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 674 ~~~~~--------~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lfHIDFG~i 745 (867)
++++| +|.+||++++|++..+ .+|++||++|||||||+||||||||||||||||+++||+||||||||
T Consensus 156 ~~~~g~~g~~~~~~l~~~l~~~~~~~~~~----~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~~~GhlfHIDFG~i 231 (354)
T cd00895 156 QVEHGVTGSFKDRPLADWLQKHNPTEDEY----EKAVENFIYSCAGCCVATYVLGICDRHNDNIMLKTTGHMFHIDFGRF 231 (354)
T ss_pred HHHhCcCcccccchHHHHHHHhCCChHHH----HHHHHHHHHHHHHHHHHHHHccccccCCCceeEcCCCCEEEEeeHHh
Confidence 98664 6899999998875432 46999999999999999999999999999999999999999999999
Q ss_pred cCCCC-----CCCCCcccccHHHHHHhCC--CCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCCCCCchHH
Q psy10441 746 LGRDP-----KPLPPPMKLSKEMVEAMGG--INSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIALEPDKA 818 (867)
Q Consensus 746 lg~~~-----k~e~vPFrLT~~mv~~mGg--~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~~~~~~~~ 818 (867)
||++| ++|++||+||++|+++||| .+++.|+.|+++|+.||++||+|+++|+++|++|+++||||++.. .+
T Consensus 232 Lg~~~~~g~~~re~~PF~Lt~emv~vm~gg~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~~sgiP~l~~~--~~ 309 (354)
T cd00895 232 LGHAQMFGNIKRDRAPFVFTSDMAYVINGGDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLMLSCGIPELSDL--ED 309 (354)
T ss_pred cCCCcccCCCCcCCCCccccHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCcccCcc--hH
Confidence 99885 4689999999999999964 468899999999999999999999999999999999999999864 45
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy10441 819 VKKVQDKFRLDLGDEEAVHYLQNLIDLSVTAVMAALVEQLHKFAQ 863 (867)
Q Consensus 819 i~~l~~~l~l~lseeeA~~~~~~lI~~s~~s~~t~i~d~~h~~aq 863 (867)
|.++++||+|++||+||.+||+++|++|+++++|++++++|++||
T Consensus 310 i~~l~~rf~l~~se~eA~~~f~~lI~~s~~s~~t~~~~~~H~~aq 354 (354)
T cd00895 310 LKYVYDALRPQDTEADATTYFTRLIESSLGSVATKLNFFIHNLAQ 354 (354)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999998
No 6
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=5.6e-87 Score=730.04 Aligned_cols=335 Identities=32% Similarity=0.561 Sum_probs=304.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhccCchhhhHHHHHHHhhccccccccccCCCCcccCCCCcEEEEEEeeCceeeecCCC
Q psy10441 517 NSYLIKQQSFIEKLVNLVKIVARESGNRKRKIDRLQALLADSETFKFNFTNFEPLPLPLDPNVYIKGIIPEKATLFKSNL 596 (867)
Q Consensus 517 ~~~l~~Q~~~~~~L~~i~~~v~~~~~~~~~k~e~L~~~l~~~~~~~~~~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~~ 596 (867)
|++|.+|.++++.|.+++++|+..+.++++ +.|++.+.... .+...++++||+||++.+.++.+++|+||+|++
T Consensus 1 r~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~--~~l~~~~~~l~----~~~~~~~~~lPl~p~~~~~~~~~~~c~v~~S~~ 74 (353)
T cd05176 1 REELEKQTRLVQLLGAVAEKVRQASSSTRQ--VVLQEGMERVQ----SFFQKNKCRLPLSPSLVAKELNIKVCSFFSSNA 74 (353)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccchhH--HHHHHHHHHHH----hhcCCCCCCCCCCcceeEccEehheeEEecccC
Confidence 467899999999999999999876655443 33554444332 111224699999999999999999999999999
Q ss_pred cceEEEEEecC--CCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcceeeeec-CccHHHH
Q psy10441 597 MPSRLTFLTTT--GTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVD-SFPVAEV 673 (867)
Q Consensus 597 ~P~~l~f~~~d--G~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~I 673 (867)
+|+||+|+++| |+.|.+|||.|||||||++++|+|++||+||+++|+|++++||+|+|||+++||||||+ +.|+++|
T Consensus 75 ~Pl~l~f~~~d~~g~~~~~ifK~gDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I 154 (353)
T cd05176 75 VPLKIALVNADPLGEEINVMFKVGEDLRQDMLALQMIKIMDKIWLQEGLDLRMVIFKCLSTGKDRGMVELVPASETLRKI 154 (353)
T ss_pred CceEEEEEccCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEEEcCCCceEEEEeCCcHhHHHH
Confidence 99999999999 89999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred HhhcC--------cHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEEEEeeccc
Q psy10441 674 LATEG--------SIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 674 ~~~~~--------~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lfHIDFG~i 745 (867)
+.+++ .+.+|+++++|++..+ .+|++||++|||||||+||||||||||+|||||+++||+||||||||
T Consensus 155 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~----~~a~~nFi~S~AgYsv~tYiLGIgDRHn~NILi~~~Ghl~HIDFG~i 230 (353)
T cd05176 155 QVEYGVTGSFKDKPLAEWLRKYNPAEEEY----EKASENFIYSCAGCCVATYVLGICDRHNDNIMLRSTGHMFHIDFGKF 230 (353)
T ss_pred HHHhCcCCccccchHHHHHHHhCCChHHH----HHHHHHHHHHHHHHHHHhhhccccCcCCcceEEcCCCCEEEEeeHHh
Confidence 98763 5889999999875432 46999999999999999999999999999999999999999999999
Q ss_pred cCCCC-----CCCCCcccccHHHHHHhCCCC--chhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCCCCCchHH
Q psy10441 746 LGRDP-----KPLPPPMKLSKEMVEAMGGIN--SEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIALEPDKA 818 (867)
Q Consensus 746 lg~~~-----k~e~vPFrLT~~mv~~mGg~~--~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~~~~~~~~ 818 (867)
||++| ++|++|||||++|+++|||.+ ++.|+.|+++|+.||++||+|+++|+++|++|+++||||++..++
T Consensus 231 lg~~~~~g~~~~e~~PFkLT~emv~~mgG~~~~s~~f~~F~~lc~~af~~LRk~~~~il~L~~lM~~s~iP~~~~~~~-- 308 (353)
T cd05176 231 LGHAQMFGSFKRDRAPFVLTSDMAYVINGGEKPTIRFQLFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPELTGVQD-- 308 (353)
T ss_pred cCCCccccCCCCCCCCeeecHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCcccCCchH--
Confidence 99986 578999999999999998754 468999999999999999999999999999999999999987655
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy10441 819 VKKVQDKFRLDLGDEEAVHYLQNLIDLSVTAVMAALVEQLHKFAQ 863 (867)
Q Consensus 819 i~~l~~~l~l~lseeeA~~~~~~lI~~s~~s~~t~i~d~~h~~aq 863 (867)
++++++||+|++||+||..||+++|++|+++++|++++++|++||
T Consensus 309 i~~l~~r~~l~~sd~ea~~~f~~lI~~s~~s~~t~~~~~~H~~aq 353 (353)
T cd05176 309 LKYVYDALQPQTTDAEATIFFTRLIESSLGSVATKFNFFIHNLAQ 353 (353)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhchhHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999997
No 7
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=1.7e-86 Score=729.42 Aligned_cols=335 Identities=33% Similarity=0.583 Sum_probs=308.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhccCchhhhHHHHHHHhhccccccccccCCCCcccCCCCcEEEEEEeeCceeeecCCCc
Q psy10441 518 SYLIKQQSFIEKLVNLVKIVARESGNRKRKIDRLQALLADSETFKFNFTNFEPLPLPLDPNVYIKGIIPEKATLFKSNLM 597 (867)
Q Consensus 518 ~~l~~Q~~~~~~L~~i~~~v~~~~~~~~~k~e~L~~~l~~~~~~~~~~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~~~ 597 (867)
++|.+|.+++++|.+++++|+..+++++++ .|++.|++.. ..+....+++||+||++.|.||.+++|+||+|+++
T Consensus 2 ~~l~~q~~~~~~L~~~~~~vk~~~~~~~~~--~l~~~l~~~~---~~~~~~~~~~lPl~P~~~i~~i~~~~~~v~~S~~~ 76 (354)
T cd05177 2 KEFSKETKLISILIDAAEKVKTASDTRRKE--VLKREASRLE---DFFQDVVSCCLPLNPALRVKGIDADACSYFTSNAA 76 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChhHHHH--HHHHHHHHhh---hhccCCCCCccCCCCCeEEEEEecCccEEehhhcC
Confidence 578999999999999999998776655443 4888887653 12222357999999999999999999999999999
Q ss_pred ceEEEEEecC--CCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcceeeeec-CccHHHHH
Q psy10441 598 PSRLTFLTTT--GTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVD-SFPVAEVL 674 (867)
Q Consensus 598 P~~l~f~~~d--G~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~I~ 674 (867)
|++|+|+++| |+.|.+|||.|||||||++++|+|++||++|+++|+|++++||+|+|||+++||||||+ +.|+++|+
T Consensus 77 Pl~l~f~~~d~~~~~~~~IfK~gDDLRQD~l~lQli~lmd~i~~~~~ldl~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~ 156 (354)
T cd05177 77 PLKISFINANPLAKNISIIFKTGDDLRQDMLVLQIVRVMDNIWLQEGLDMQMIIYRCLSTGKTQGLVQMVPDAVTLAKIH 156 (354)
T ss_pred CCEEEEEecCCCCCeEEEEEeCCCcccHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCCceEEEEeCChHhHHHHH
Confidence 9999999998 89999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred hhc--------CcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEEEEeecccc
Q psy10441 675 ATE--------GSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 675 ~~~--------~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+++ +++.+||+.+++++..+ .+|++||++|||||||+||||||||||||||||+++||+|||||||||
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~a~~nF~~S~AgysvvtYiLGigDRHn~NILi~~~G~~~HIDFG~il 232 (354)
T cd05177 157 RESGLIGPLKENTIEKWFHMHNKLKEDY----DKAVRNFFHSCAGWCVVTFILGVCDRHNDNIMLTHSGHMFHIDFGKFL 232 (354)
T ss_pred HhhCCCcccchhhHHHHHHHhCCChHHH----HHHHHHHHHHHHHHHHHHHHhcccCcCCCceeEcCCCCEEEEehHHhc
Confidence 875 36899999988775433 469999999999999999999999999999999999999999999999
Q ss_pred CCCCC-----CCCCcccccHHHHHH--hCCCCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCCCCCchHHH
Q psy10441 747 GRDPK-----PLPPPMKLSKEMVEA--MGGINSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIALEPDKAV 819 (867)
Q Consensus 747 g~~~k-----~e~vPFrLT~~mv~~--mGg~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~~~~~~~~i 819 (867)
|++|+ +|++|||||++|+++ |||.++++|+.|+.+|+.||++||+|+++|+++|++|+++++||++..++ +
T Consensus 233 g~~~~~~~~~~E~~PF~LT~emv~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~~~~~--i 310 (354)
T cd05177 233 GHAQTFGSIKRDRAPFIFTSEMEYFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELKDIQD--L 310 (354)
T ss_pred CCCccccCCCcCCCCeeccHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcchH--H
Confidence 99873 789999999999975 58889999999999999999999999999999999999999999987655 9
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy10441 820 KKVQDKFRLDLGDEEAVHYLQNLIDLSVTAVMAALVEQLHKFAQ 863 (867)
Q Consensus 820 ~~l~~~l~l~lseeeA~~~~~~lI~~s~~s~~t~i~d~~h~~aq 863 (867)
+++++||+|++||+||.+||+++|++|++++.|++++++|++||
T Consensus 311 ~~l~~~~~l~~sd~eA~~~f~~lI~~s~~~~~~~~~~~~H~~aq 354 (354)
T cd05177 311 KYVYNNLRPQDTDLEATSYFTKKIKESLECFPVKLNNLIHTLAQ 354 (354)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999997
No 8
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=3.8e-85 Score=716.54 Aligned_cols=335 Identities=28% Similarity=0.566 Sum_probs=304.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcc-Cchhhh-HHHHHHHhhccccccccccCCCCcccCCCCcEEEEEEeeCceeeecCC
Q psy10441 518 SYLIKQQSFIEKLVNLVKIVARES-GNRKRK-IDRLQALLADSETFKFNFTNFEPLPLPLDPNVYIKGIIPEKATLFKSN 595 (867)
Q Consensus 518 ~~l~~Q~~~~~~L~~i~~~v~~~~-~~~~~k-~e~L~~~l~~~~~~~~~~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~ 595 (867)
+.|.+|++++++|.++++.++..+ ++++++ .+.|+..|++++ ....++++++|+||++.+.||.+++|+||+|+
T Consensus 2 ~~l~~Q~~~~~~L~~~~~~ik~~~~~~~~k~~~~~l~~~l~~~~----~~~~~~~~~lPl~P~~~~~~i~~e~c~v~~S~ 77 (366)
T cd05175 2 KHLSRQVEAMEKLINLTDILKQEKKDETQKVQMKFLVEQMRRPD----FMDALQGFTSPLNPAHQLGNLRLEECRIMSSA 77 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhcCch----hhhccCCCCCCCCCceEEEEEEeccceeechh
Confidence 457899999999999999998776 344344 678899888764 12334789999999999999999999999999
Q ss_pred CcceEEEEEecCC------CeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcceeeeec-Cc
Q psy10441 596 LMPSRLTFLTTTG------TEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVD-SF 668 (867)
Q Consensus 596 ~~P~~l~f~~~dG------~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~-s~ 668 (867)
++|+||+|++.|+ ..|.+|||+|||||||++++|+|++||+||+++|+||+|+||+|+|||+++||||||+ +.
T Consensus 78 ~~Pl~l~f~~~d~~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ns~ 157 (366)
T cd05175 78 KRPLWLNWENPDIMSELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENIWQNQGLDLRMLPYGCLSIGDCVGLIEVVRNSH 157 (366)
T ss_pred cCCeEEEEEcCCcccccccCCcceEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEEEecCCceEEEEcCCch
Confidence 9999999999987 4689999999999999999999999999999999999999999999999999999998 89
Q ss_pred cHHHHHhhc----------CcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEE
Q psy10441 669 PVAEVLATE----------GSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLF 738 (867)
Q Consensus 669 tl~~I~~~~----------~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lf 738 (867)
|+++|+++. .++.+|++++++++ .+ .+|++||++|||||||+||||||||||||||||+++||+|
T Consensus 158 tl~~I~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~---~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~~~G~l~ 232 (366)
T cd05175 158 TIMQIQCKGGLKGALQFNSHTLHQWLKDKNKGE--MY---DAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKDDGQLF 232 (366)
T ss_pred hHHHHHhccccccccccCchhHHHHHhhcCCcH--HH---HHHHHHHHHHHHHHHHHHHHhcccccCccceeEcCCCCEE
Confidence 999998754 35889999877643 22 4699999999999999999999999999999999999999
Q ss_pred EEeeccccCCCCC-----CCCCcccccHHHHHHhCC-----CCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCC
Q psy10441 739 HIDFGYILGRDPK-----PLPPPMKLSKEMVEAMGG-----INSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASV 808 (867)
Q Consensus 739 HIDFG~ilg~~~k-----~e~vPFrLT~~mv~~mGg-----~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~i 808 (867)
|||||||||++|+ ||+||||||++|+++||| .+++.|+.|+.+|+.||++||+|+++|++||++|+++|+
T Consensus 233 HIDFG~iLg~~p~~~~~~~E~~PFkLT~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~sgi 312 (366)
T cd05175 233 HIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGM 312 (366)
T ss_pred EEehHHhhcCCCccCCCCCCCCCeEecHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999875 468999999999999974 368899999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Q psy10441 809 PDIALEPDKAVKKVQDKFRLDLGDEEAVHYLQNLIDLSVT-AVMAALVEQLHKFAQ 863 (867)
Q Consensus 809 p~~~~~~~~~i~~l~~~l~l~lseeeA~~~~~~lI~~s~~-s~~t~i~d~~h~~aq 863 (867)
||++..++ +.+|++||+|++||+||.+||.++|++|++ +|+|+++.++|++||
T Consensus 313 P~l~~~~~--i~~lr~rf~l~~sd~eA~~~f~~~I~~s~~~~w~t~~n~~~H~~~~ 366 (366)
T cd05175 313 PELQSFDD--IAYIRKTLALDKTEQEALEYFMKQMNDAHHGGWTTKMDWIFHTIKQ 366 (366)
T ss_pred cccCCccH--HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcCceeeehHHHHhhcC
Confidence 99997655 899999999999999999999999999997 689999999999997
No 9
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=9.4e-85 Score=718.51 Aligned_cols=336 Identities=32% Similarity=0.593 Sum_probs=308.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcc---CchhhhHHHHHHHhhccccccccccCCCCcccCCCCcEEEEEEeeCceeeecC
Q psy10441 518 SYLIKQQSFIEKLVNLVKIVARES---GNRKRKIDRLQALLADSETFKFNFTNFEPLPLPLDPNVYIKGIIPEKATLFKS 594 (867)
Q Consensus 518 ~~l~~Q~~~~~~L~~i~~~v~~~~---~~~~~k~e~L~~~l~~~~~~~~~~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S 594 (867)
+.|.+|++++++|.++++.++..+ +++.++.+.|++.|++.. ....++++++|+||+++|.||.+++|+||+|
T Consensus 2 ~~l~~Q~~~~~~l~~~~~~ik~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~lPl~P~~~v~~i~~~~~~v~~S 77 (366)
T cd05165 2 KDLSKQVEALNKLKKLTDIIKSLSAKYDVKEQVKSQLEQVLRQLA----NLDLLQSFQSPLNPSLKLGELRIEKCKVMDS 77 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHcccc----hhcccccCCCCCCCceeEeeeecCceEEehh
Confidence 467899999999999999998765 456677899999998864 1222378999999999999999999999999
Q ss_pred CCcceEEEEEecC-----CCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcceeeeec-Cc
Q psy10441 595 NLMPSRLTFLTTT-----GTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVD-SF 668 (867)
Q Consensus 595 ~~~P~~l~f~~~d-----G~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~-s~ 668 (867)
+++|+||+|+++| |+.|.+|||.|||||||+++||+|++||+||+++++|++++||+|+|||+++||||||+ +.
T Consensus 78 k~~P~~l~f~~~d~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~~~~~ldL~l~pY~vl~t~~~~GlIE~V~ns~ 157 (366)
T cd05165 78 KKKPLWLVFENADPTALSNENVGIIFKNGDDLRQDMLTLQILRIMDSIWKEEGLDLRMLPYGCLSTGDKIGLIEVVRDST 157 (366)
T ss_pred hcCCcEEEEEccCcccccCCceeEEEecCCcccHHHHHHHHHHHHHHHHHhCCCCceeEEEEEEEecCCceEEEEeCCch
Confidence 9999999999998 68999999999999999999999999999999999999999999999999999999998 99
Q ss_pred cHHHHHhhcC----------cHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEE
Q psy10441 669 PVAEVLATEG----------SIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLF 738 (867)
Q Consensus 669 tl~~I~~~~~----------~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lf 738 (867)
|+++|+++++ .+.+|++++++.+.. | .+|++||++|||||||+||||||||||+|||||+++||+|
T Consensus 158 tl~~I~~~~~~~~~~~f~~~~l~~wl~~~~~~~~~-~---~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~~~G~l~ 233 (366)
T cd05165 158 TIANIQQETGGNATAAFKKEALLHWLKEKNPTEEK-L---DAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVKETGQLF 233 (366)
T ss_pred hHHHHHHhcccccccccCcHHHHHHHHhhCCCHHH-H---HHHHHHHHHHHHHHHHHHHHhhccccCCcceEEcCCCCEE
Confidence 9999998763 488999998875432 2 4699999999999999999999999999999999999999
Q ss_pred EEeeccccCCCCC-----CCCCcccccHHHHHHhCC----CCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCC
Q psy10441 739 HIDFGYILGRDPK-----PLPPPMKLSKEMVEAMGG----INSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVP 809 (867)
Q Consensus 739 HIDFG~ilg~~~k-----~e~vPFrLT~~mv~~mGg----~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip 809 (867)
|||||||||++|+ ||+||||||++|+++||+ .+++.|+.|+.+|+.||++||+|+++|+++|++|+++++|
T Consensus 234 HIDFG~ilg~~~~~~~i~~E~~PFkLT~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip 313 (366)
T cd05165 234 HIDFGHILGNYKSKFGINRERVPFVLTPDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLP 313 (366)
T ss_pred EEehHHhhccCCccCCCCCCCCCeeecHHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCc
Confidence 9999999999864 578999999999999984 3688999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Q psy10441 810 DIALEPDKAVKKVQDKFRLDLGDEEAVHYLQNLIDLSVT-AVMAALVEQLHKFAQ 863 (867)
Q Consensus 810 ~~~~~~~~~i~~l~~~l~l~lseeeA~~~~~~lI~~s~~-s~~t~i~d~~h~~aq 863 (867)
|++.. .+|.++++||+|++||+||.++|+++|++|++ +++|.+++++|++|+
T Consensus 314 ~~~~~--~~i~~lr~rf~l~~se~eA~~~f~~~I~~s~~~~~~t~~~~~~H~~~~ 366 (366)
T cd05165 314 ELTSK--EDIEYLRDTLALGKSEEEALKYFLDKFNEALDGSWTTKFNWFSHLVLK 366 (366)
T ss_pred ccCch--hHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCceeeeHHHHHHhcC
Confidence 99865 45999999999999999999999999999997 789999999999974
No 10
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=2.7e-84 Score=711.86 Aligned_cols=335 Identities=32% Similarity=0.576 Sum_probs=307.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhc--cCchhhhHHHHHHHhhccccccccccCCCCcccCCCCcEEEEEEeeCceeeecCC
Q psy10441 518 SYLIKQQSFIEKLVNLVKIVARE--SGNRKRKIDRLQALLADSETFKFNFTNFEPLPLPLDPNVYIKGIIPEKATLFKSN 595 (867)
Q Consensus 518 ~~l~~Q~~~~~~L~~i~~~v~~~--~~~~~~k~e~L~~~l~~~~~~~~~~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~ 595 (867)
+.|.+|.+++++|..+++.++.. ++++.++.|+|+++|++.. ....+.++++|+||++.+.++.+++|+||+|+
T Consensus 2 ~~l~~q~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~lPl~p~~~~~~~~~~~~~v~~Sk 77 (361)
T cd05174 2 KVLMKQGEALSKMKALNDFVKLSSQKATKPQTKEDMHVCMKQET----YLEALSHLQSPLSPSIILCEVCVDQCTFMDSK 77 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhcCch----hhhhhccCCCCCCCceEEEEEEcCcEEEEecc
Confidence 46789999999999999999876 3566778999999999874 22344679999999999999999999999999
Q ss_pred CcceEEEEEecC--CCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcceeeeec-CccHHH
Q psy10441 596 LMPSRLTFLTTT--GTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVD-SFPVAE 672 (867)
Q Consensus 596 ~~P~~l~f~~~d--G~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~ 672 (867)
++|+||+|++.| |+.|.+|||+|||||||+++||+|++||.||+++|+|++++||+|+|||+++||||||+ +.|+++
T Consensus 78 ~~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~~Qli~lmd~i~k~~~ldL~l~pY~vi~tg~~~GlIE~V~ns~Tl~~ 157 (361)
T cd05174 78 MKPLWIMYKNEEAGGGSVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQEGLDLRMTPYGCLSTGDKTGLIEVVKNSDTIAN 157 (361)
T ss_pred CCceEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEecCCceEEEEeCCchhHHH
Confidence 999999999976 99999999999999999999999999999999999999999999999999999999998 899999
Q ss_pred HHhhc-----------CcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEEEEe
Q psy10441 673 VLATE-----------GSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHID 741 (867)
Q Consensus 673 I~~~~-----------~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lfHID 741 (867)
|+++. +.+.+|+++++|++ ++ .+|++||++|||||||+||||||||||||||||+++||+||||
T Consensus 158 I~~~~~~~~~~~~f~~~~l~~~l~~~~~~~--~~---~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~~~G~l~HID 232 (361)
T cd05174 158 IQLNKSNMAATAAFNKDALLNWLKSKNPGD--AL---DQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRESGQLFHID 232 (361)
T ss_pred HHHhhcccchhccccchHHHHHHHhcCCcH--HH---HHHHHHHHHHHHHHHHHHHHhcccCcCccceeEcCCCCEEEEe
Confidence 98653 36889999888763 33 4689999999999999999999999999999999999999999
Q ss_pred eccccCCCC-----CCCCCcccccHHHHHHhCC---CCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCCCC
Q psy10441 742 FGYILGRDP-----KPLPPPMKLSKEMVEAMGG---INSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIAL 813 (867)
Q Consensus 742 FG~ilg~~~-----k~e~vPFrLT~~mv~~mGg---~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~~~ 813 (867)
||||||+.| +||++|||||++|+++||+ .+++.|+.|+.+|+.||++||+|+++|+++|++|+++|+||++.
T Consensus 233 FG~ilg~~~~~~~~~~E~vPFkLT~e~v~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~~~~ 312 (361)
T cd05174 233 FGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPELNC 312 (361)
T ss_pred hHHhhcCCcccCCCCCCCCCeeccHHHHHHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCccCc
Confidence 999999865 3689999999999999962 46788999999999999999999999999999999999999986
Q ss_pred CchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q psy10441 814 EPDKAVKKVQDKFRLDLGDEEAVHYLQNLIDLSV-TAVMAALVEQLHKFAQ 863 (867)
Q Consensus 814 ~~~~~i~~l~~~l~l~lseeeA~~~~~~lI~~s~-~s~~t~i~d~~h~~aq 863 (867)
. ++|+++++||+|++||+||.++|+++|++|+ ++|+|++++++|++|+
T Consensus 313 ~--~~i~~l~~~~~l~~se~ea~~~f~~~i~~s~~~~~~~~~n~~~H~~a~ 361 (361)
T cd05174 313 S--KDIQYLKDSLALGKTEEEALKHFRVKFNEALRESWKTKVNWLAHNVSK 361 (361)
T ss_pred h--hHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCchhhhHHHHHhhcC
Confidence 4 5599999999999999999999999999999 6889999999999985
No 11
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=4.2e-84 Score=711.23 Aligned_cols=335 Identities=31% Similarity=0.555 Sum_probs=304.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhccC----chhhhHHHHHHHhhccccccccccCCCCcccCCCCcEEEEEEeeCceeeec
Q psy10441 518 SYLIKQQSFIEKLVNLVKIVARESG----NRKRKIDRLQALLADSETFKFNFTNFEPLPLPLDPNVYIKGIIPEKATLFK 593 (867)
Q Consensus 518 ~~l~~Q~~~~~~L~~i~~~v~~~~~----~~~~k~e~L~~~l~~~~~~~~~~~~~~~~~lPl~p~~~i~~i~~~~~~v~~ 593 (867)
.++.+|.+++++|..++..|+..+. .+.++.+.|++.|.+.. .+...+++++|+||++++.||.+++|+||+
T Consensus 2 ~~~~~q~~~~~~l~~i~~~vk~~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~lPl~P~~~~~~i~~~~~~v~~ 77 (365)
T cd00894 2 HDFTQQVQVIEMLQKVTLDIKSLSAEKYDVSSQVISQLKQKLENLQ----NLNLPESFRVPYDPGLRAGALVIEKCKVMA 77 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhh----hccCCCCCCCCCCCceEEEEEEcCceEEEc
Confidence 4688999999999999999987553 23455778888887765 222346899999999999999999999999
Q ss_pred CCCcceEEEEEecCC-----CeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcceeeeec-C
Q psy10441 594 SNLMPSRLTFLTTTG-----TEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVD-S 667 (867)
Q Consensus 594 S~~~P~~l~f~~~dG-----~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~-s 667 (867)
|+++|+||+|++.|+ ..+.+|||.|||||||++++|+|++||+||+++|+||+++||+|+|||+++||||||+ +
T Consensus 78 S~~~Pl~l~f~~~d~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vi~tg~~~GlIE~V~ns 157 (365)
T cd00894 78 SKKKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDA 157 (365)
T ss_pred ccCCceEEEEECCCCCccCCCceeEEEeCCCcccHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEEecCCceEEEEcCCc
Confidence 999999999999886 5799999999999999999999999999999999999999999999999999999998 9
Q ss_pred ccHHHHHhhc---------CcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEE
Q psy10441 668 FPVAEVLATE---------GSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLF 738 (867)
Q Consensus 668 ~tl~~I~~~~---------~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lf 738 (867)
.|+++|++.. ..+.+||+++++++..+ .+|++||++|||||||+||||||||||||||||+++||+|
T Consensus 158 ~tl~~I~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~----~~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~~~G~lf 233 (365)
T cd00894 158 TTIAKIQQSTVGNTGAFKDEVLSHWLKEKCPIEEKF----QAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITETGNLF 233 (365)
T ss_pred hhHHHHHHhcccccccccchhHHHHHHHhCCCHHHH----HHHHHHHHHHhHHHHHHHHhccccCccccceeEcCCCCEE
Confidence 9999998764 24889999998765432 3699999999999999999999999999999999999999
Q ss_pred EEeeccccCCCC-----CCCCCcccccHHHHHHhC---CCCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCC
Q psy10441 739 HIDFGYILGRDP-----KPLPPPMKLSKEMVEAMG---GINSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPD 810 (867)
Q Consensus 739 HIDFG~ilg~~~-----k~e~vPFrLT~~mv~~mG---g~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~ 810 (867)
|||||||||++| +||+||||||++|+++|| |.+++.|+.|+.+|+.||++||+|+++|+++|++|+++|+||
T Consensus 234 HIDFG~ilg~~~~~~gi~~E~~PFkLT~e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip~ 313 (365)
T cd00894 234 HIDFGHILGNYKSFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQ 313 (365)
T ss_pred EEeeHHhhCCCCccCCCCCCCCCeeecHHHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcc
Confidence 999999999986 368999999999999998 567889999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHH
Q psy10441 811 IALEPDKAVKKVQDKFRLDLGDEEAVHYLQNLIDLSVTA-VMAALVEQLHKFA 862 (867)
Q Consensus 811 ~~~~~~~~i~~l~~~l~l~lseeeA~~~~~~lI~~s~~s-~~t~i~d~~h~~a 862 (867)
++..++ +.++++||+|++||+||.++|.++|++|+++ ++|++++++|.+|
T Consensus 314 l~~~~~--i~~l~~~~~l~~se~eA~~~f~~~I~~s~~~~~~~~~n~~~h~~~ 364 (365)
T cd00894 314 LTSKED--IEYIRDALTVGKSEEDAKKHFLDQIEVCRDKGWTVQFNWFLHLVL 364 (365)
T ss_pred cCcchH--HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCeeeeHHHHHHhc
Confidence 986544 9999999999999999999999999999975 7999999999987
No 12
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=1.3e-83 Score=708.43 Aligned_cols=335 Identities=31% Similarity=0.579 Sum_probs=304.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhccC--chhhhHHHHHHHhhccccccccccCCCCcccCCCCcEEEEEEeeCceeeecCC
Q psy10441 518 SYLIKQQSFIEKLVNLVKIVARESG--NRKRKIDRLQALLADSETFKFNFTNFEPLPLPLDPNVYIKGIIPEKATLFKSN 595 (867)
Q Consensus 518 ~~l~~Q~~~~~~L~~i~~~v~~~~~--~~~~k~e~L~~~l~~~~~~~~~~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~ 595 (867)
+.|.+|++++++|..+++.++..++ ++.++.|.|+..|++.. .. ..++++++|+||++.|.||.+++|+||+|+
T Consensus 2 ~~l~~Q~~~~~~l~~~~~~~k~~~~~~~~~~~~~~l~~~l~~~~--~~--~~~~~~~lPldP~~~v~~i~~~~~~v~~S~ 77 (362)
T cd05173 2 KVLSKQVEALNKLKTLNSLIKLNAVKLSKAKGKEAMHTCLRQSA--YR--EALSDLQSPLNPSIILSELNVEKCKYMDSK 77 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhccc--ch--hcccCCCCCCCCceEEEEEEcCceEEeccc
Confidence 4678999999999999999987554 56677899999998864 11 123789999999999999999999999999
Q ss_pred CcceEEEEEec--CCCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcceeeeec-CccHHH
Q psy10441 596 LMPSRLTFLTT--TGTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVD-SFPVAE 672 (867)
Q Consensus 596 ~~P~~l~f~~~--dG~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~ 672 (867)
++|+||+|.+. +|+.|.+|||+|||||||++++|+|++||+||+++|+||+++||+|+|||+++||||||+ +.|+++
T Consensus 78 ~~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~k~~~ldL~l~pY~vi~t~~~~GlIE~V~ns~tl~~ 157 (362)
T cd05173 78 MKPLWIVYNNKLFGGDSLGIIFKNGDDLRQDMLTLQILRLMDTLWKEAGLDLRIVPYGCLATGDRSGLIEVVSSAETIAD 157 (362)
T ss_pred CCCeEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEccCCceEEEEeCCchhHHH
Confidence 99999999886 689999999999999999999999999999999999999999999999999999999998 899999
Q ss_pred HHhhc-----------CcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEEEEe
Q psy10441 673 VLATE-----------GSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHID 741 (867)
Q Consensus 673 I~~~~-----------~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lfHID 741 (867)
|+.+. +.+.+|++++++++ ++ .+|++||++|||||||+||||||||||+|||||+++||+||||
T Consensus 158 I~~~~~~~~~~~~f~~~~l~~~l~~~~~~~--~~---~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~~~G~l~HID 232 (362)
T cd05173 158 IQLNSSNVAAAAAFNKDALLNWLKEYNSGD--DL---ERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVRKNGQLFHID 232 (362)
T ss_pred HHHhccccchhcccChhHHHHHHHhcCCcH--HH---HHHHHHHHHHHHHHHHHHHHhhccccCCCceEECCCCCEEEEe
Confidence 98543 36889999876543 23 4699999999999999999999999999999999999999999
Q ss_pred eccccCCCC-----CCCCCcccccHHHHHHhC-CC--CchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCCCC
Q psy10441 742 FGYILGRDP-----KPLPPPMKLSKEMVEAMG-GI--NSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIAL 813 (867)
Q Consensus 742 FG~ilg~~~-----k~e~vPFrLT~~mv~~mG-g~--~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~~~ 813 (867)
||||||+.+ +||+||||||++|+++|| |. +++.|+.|+.+|+.||++||+|+++|++++++|+++|+||++.
T Consensus 233 FG~ilg~~~~~~~~~~E~vPFkLT~emv~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~~ 312 (362)
T cd05173 233 FGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELTS 312 (362)
T ss_pred hHHhhccCCcccCCCCCCCCeeecHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccccc
Confidence 999999864 479999999999999996 43 3678999999999999999999999999999999999999986
Q ss_pred CchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Q psy10441 814 EPDKAVKKVQDKFRLDLGDEEAVHYLQNLIDLSVT-AVMAALVEQLHKFAQ 863 (867)
Q Consensus 814 ~~~~~i~~l~~~l~l~lseeeA~~~~~~lI~~s~~-s~~t~i~d~~h~~aq 863 (867)
. ++|+++++||+|++||+||.++|+++|++|++ +++|++++++|++|+
T Consensus 313 ~--~~i~~l~~r~~l~~se~eA~~~f~~~i~~s~~~~~~t~~n~~~H~~~~ 361 (362)
T cd05173 313 V--KDIQYLKDSLALGKSEEEALKQFRQKFDEALRESWTTKVNWMAHTVRK 361 (362)
T ss_pred h--hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 4 45999999999999999999999999999995 899999999999986
No 13
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=3.8e-83 Score=706.17 Aligned_cols=334 Identities=34% Similarity=0.604 Sum_probs=308.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhccCchhhhHHHHHHHhhccccccccccCCCCcccCCCCcEEEEEEeeCceeeecCCCc
Q psy10441 518 SYLIKQQSFIEKLVNLVKIVARESGNRKRKIDRLQALLADSETFKFNFTNFEPLPLPLDPNVYIKGIIPEKATLFKSNLM 597 (867)
Q Consensus 518 ~~l~~Q~~~~~~L~~i~~~v~~~~~~~~~k~e~L~~~l~~~~~~~~~~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~~~ 597 (867)
++|.+|.+++++|.++++.++..+.+ ++.+.|++.|+... ......++++|++|++.+.+|.+++|+||+|+++
T Consensus 2 ~~l~~q~~~~~~l~~i~~~vk~~~~~--~~~~~l~~~l~~~~----~~~~~~~~~lP~~p~~~~~~i~~~~~~v~~S~~~ 75 (353)
T cd05166 2 EEFKKQHKLVNKLGSIAEDVKSASES--ARQHVLRTGLGRVD----SFLLQNKCRLPLNPALDVKGIDVRECSYFNSNAL 75 (353)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCchH--HHHHHHHHHHHhhh----hhccCCCCccCCCCceEEEeEEcCceEEeccccC
Confidence 46889999999999999999876533 45678999888764 1112358999999999999999999999999999
Q ss_pred ceEEEEEecC--CCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcceeeeec-CccHHHHH
Q psy10441 598 PSRLTFLTTT--GTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVD-SFPVAEVL 674 (867)
Q Consensus 598 P~~l~f~~~d--G~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~I~ 674 (867)
|++|+|.++| |+.|.+|||.|||||||+++||+|++||+||+++|+|++++||+|+|||+++||||||+ +.|+++|+
T Consensus 76 P~~l~f~~~d~~g~~~~~i~K~gDDLRQD~l~~Qli~lm~~i~~~~~ldL~l~~Y~vip~~~~~GlIE~V~ns~tl~~I~ 155 (353)
T cd05166 76 PLKISFVNADPMGENISVIFKAGDDLRQDMLVLQMINIMDKIWLQEGLDLRMITFRCLSTGYDRGMVELVPDAETLRKIQ 155 (353)
T ss_pred ceEEEEEecCCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCceeEEEEEEEcCCCcceEEEeCCchhHHHHH
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred hhcC--------cHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEEEEeecccc
Q psy10441 675 ATEG--------SIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 675 ~~~~--------~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+++| .+.+||+++++++..+ .+|++||++|||||||+||||||||||+|||||+++||+|||||||+|
T Consensus 156 ~~~g~~~~~~~~~l~~~l~~~~~~~~~~----~~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~~~G~l~HIDFG~~l 231 (353)
T cd05166 156 VEEGLTGSFKDRPIAKWLMKHNPSELEY----EKAVENFIYSCAGCCVATYVLGICDRHNDNIMLTKSGHMFHIDFGKFL 231 (353)
T ss_pred HHhCccccccchhHHHHHHHhCCChHHH----HHHHHHHHhHHHHHHHHHHHhhccccCCCceEECCCCCEEEEeeHHhc
Confidence 8764 6889999998875443 369999999999999999999999999999999999999999999999
Q ss_pred CCCC-----CCCCCcccccHHHHHHhCCC--CchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCCCCCchHHH
Q psy10441 747 GRDP-----KPLPPPMKLSKEMVEAMGGI--NSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIALEPDKAV 819 (867)
Q Consensus 747 g~~~-----k~e~vPFrLT~~mv~~mGg~--~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~~~~~~~~i 819 (867)
|+++ ++|+||||||++|+++|||. +++.|+.|+.+|+.||++||+|+++|++++++|+++++|||+.. .++
T Consensus 232 g~~~~~~~~~~E~~PFrLT~emv~~~ggg~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~~~--~~i 309 (353)
T cd05166 232 GHAQMFGGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSKI--QDL 309 (353)
T ss_pred ccccccccCCCCCCCccccHHHHHHhcCCCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccCch--hHH
Confidence 9876 47999999999999999754 57889999999999999999999999999999999999999864 569
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy10441 820 KKVQDKFRLDLGDEEAVHYLQNLIDLSVTAVMAALVEQLHKFAQ 863 (867)
Q Consensus 820 ~~l~~~l~l~lseeeA~~~~~~lI~~s~~s~~t~i~d~~h~~aq 863 (867)
.++++||+|++||+||.++|.++|++|+++++|++++++|.+||
T Consensus 310 ~~l~~r~~l~~s~~ea~~~~~~~I~~s~~s~~t~~~~~~H~~aq 353 (353)
T cd05166 310 KYVRDALRPQLTDAEATIQFTKMIQSSLGSAFTKLNFFIHNLAQ 353 (353)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999997
No 14
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=6.9e-82 Score=697.37 Aligned_cols=335 Identities=39% Similarity=0.669 Sum_probs=310.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhccCchhhhHHHHHHHhhccccccccccCCCCcccCCCCcEEEEEEeeCceeeecCCC
Q psy10441 517 NSYLIKQQSFIEKLVNLVKIVARESGNRKRKIDRLQALLADSETFKFNFTNFEPLPLPLDPNVYIKGIIPEKATLFKSNL 596 (867)
Q Consensus 517 ~~~l~~Q~~~~~~L~~i~~~v~~~~~~~~~k~e~L~~~l~~~~~~~~~~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~~ 596 (867)
|++|.+|++|+++|.+++..++.. +++.++.+.|++.|++.. . ....++++|+||++.+.+|++++|+||+|++
T Consensus 1 r~~l~~q~~~~~~l~~i~~~ik~~-~~~~~~~~~l~~~L~~~~----~-~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~~ 74 (352)
T cd00891 1 RSELLKQVEVINELKTLAKKVKRE-KSKSQRKELLREELKKLE----N-NLPQEFTLPLDPRLEIKGLIIEKCKVMDSKK 74 (352)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHHhhhh----c-cCCCCccCCCCCceEEEEEeccceEEecccc
Confidence 357889999999999999999865 345566788999998865 1 2246899999999999999999999999999
Q ss_pred cceEEEEEecC--CCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcceeeeec-CccHHHH
Q psy10441 597 MPSRLTFLTTT--GTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVD-SFPVAEV 673 (867)
Q Consensus 597 ~P~~l~f~~~d--G~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~I 673 (867)
+|++|+|.++| |+.|.+|||+|||||||++++|++++||++|+++++|++++||+|+|||+++||||||+ +.|+++|
T Consensus 75 ~P~~l~f~~~d~~g~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~ns~tl~~I 154 (352)
T cd00891 75 KPLWLVFKNADPSGEPIKVIFKVGDDLRQDMLTLQMIRLMDKIWKKEGLDLRMTPYGCIATGDGVGMIEVVPNSETIAKI 154 (352)
T ss_pred CCcEEEEEecCCCCCEEEEEeccCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEccCCceEEEEeCCCccHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred HhhcC---------cHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEEEEeecc
Q psy10441 674 LATEG---------SIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHIDFGY 744 (867)
Q Consensus 674 ~~~~~---------~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lfHIDFG~ 744 (867)
+++++ .+.+|+++.++++..+ .+|++||++|||||||+||||||||||+|||||+++||+||||||+
T Consensus 155 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~~~G~~~HIDFG~ 230 (352)
T cd00891 155 QKKAGGVGGAFKDNPLMNWLKKKNKGEEDY----EKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLTKTGHLFHIDFGH 230 (352)
T ss_pred HHhcCccccccccchHHHHHHHhCCCHHHH----HHHHHHHhhhHHHHHHHHHHccccccCCCceEECCCCCEEEEehHH
Confidence 98763 5889999988775433 3699999999999999999999999999999999999999999999
Q ss_pred ccCCCCC-----CCCCcccccHHHHHHhCCCCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCCCCCchHHH
Q psy10441 745 ILGRDPK-----PLPPPMKLSKEMVEAMGGINSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIALEPDKAV 819 (867)
Q Consensus 745 ilg~~~k-----~e~vPFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~~~~~~~~i 819 (867)
+||++|+ ||+||||||++|+++|||.+++.|+.|+.+|+.||.+||+|+++|++++++|+++++||++. ..++
T Consensus 231 ilg~~~~~~~~~~E~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~~--~~~i 308 (352)
T cd00891 231 FLGNFKKKFGIKRERAPFVLTPDMAYVMGGGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQS--IEDI 308 (352)
T ss_pred hhccCCccCCCCCCCCCeeecHHHHHHhCCCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccCc--HHHH
Confidence 9998764 57899999999999999999999999999999999999999999999999999999999984 4569
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy10441 820 KKVQDKFRLDLGDEEAVHYLQNLIDLSVTAVMAALVEQLHKFAQ 863 (867)
Q Consensus 820 ~~l~~~l~l~lseeeA~~~~~~lI~~s~~s~~t~i~d~~h~~aq 863 (867)
.++++||++++||+||..+|.++|++|+++++|+++|++|++||
T Consensus 309 ~~l~~r~~l~~s~~~a~~~~~~lI~~s~~~~~~~~~~~~h~~~~ 352 (352)
T cd00891 309 EYLRDALALDKSDEEATEYFRKLIHESLNSKTTKVNNFIHNLAH 352 (352)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhcchHhHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999997
No 15
>KOG0902|consensus
Probab=100.00 E-value=3.3e-77 Score=705.23 Aligned_cols=491 Identities=26% Similarity=0.443 Sum_probs=416.9
Q ss_pred CCHHHHHHHHhchhhhhhchhhHHhhhccccCCChHHHHHHHHHhhccCCCCHhhHhhccCCC-CCCHHHHHHHHHHhcc
Q psy10441 308 LTTEEQDLIWKFRFYLSNQKKALTKFLECVNWELQAEARQALDLLDQWAPMDVEDSLQLLSPA-FKHSAVRRYAVTRLQQ 386 (867)
Q Consensus 308 L~~~ek~llWk~R~~l~~~p~aL~kfL~sV~W~~~~e~~~a~~lL~~W~~i~~~~ALeLL~~~-f~~~~VR~yAV~~L~~ 386 (867)
+..+...++-..-.-+...|+||+.|+ .|...++-+--...+..|+|.+|..+|.+|.|. +.||.+-+|||++|++
T Consensus 1286 ~~~~~~~~v~~~~~~~~~i~~al~~~~---~~~~~~~~~~dl~~~l~Wa~~~~~~~l~~l~p~~~~~p~~~~~~~~~l~s 1362 (1803)
T KOG0902|consen 1286 LKEEVTRLVRFDPADLVHIPEALKLFV---TQKTTEESRSDLSHTLYWAPVSPLGVLDLLTPIRKPHPRLMQYAVRVLRS 1362 (1803)
T ss_pred hhHHhhHHhhcChhhhhccHHHHHHHh---ccCcccccccchhheeeccccCcccchhhcccccCCCcHHHHHHHHHHHh
Confidence 555566677777888899999999985 565555555556677899999999999999975 4899999999999999
Q ss_pred CCchhHHHHHHHHHHHhcccccccccccccccCCCcchhhhhhhhhhccccccccccCCcccchhHHHHHHHHHhcCcch
Q psy10441 387 ASDEDLLLYLLQLVQALKYENFEDIMHGYKKLKVPPAIEASVLAEEMSSNVLEYNLDSSHAENMDLTSFLIHRASKSLTL 466 (867)
Q Consensus 387 ~~d~eL~~yLlQLVQaLkyE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~La~fLi~ra~~n~~i 466 (867)
.+.++.++|.||+||+|||+.. ...+.|+|+.|-++..+
T Consensus 1363 ~~~~~~~fyvPQiVq~lryDkm-----------------------------------------~~v~~~il~~a~~s~l~ 1401 (1803)
T KOG0902|consen 1363 YSPNEMLFYVPQIVQALRYDKM-----------------------------------------GYVEEYILWAAGKSQLF 1401 (1803)
T ss_pred CChhhhhhhhHHHHHHHhhcch-----------------------------------------hHHHHHHHHHhhhhHHH
Confidence 9999999999999999999987 56899999999999999
Q ss_pred hhHHHHHhhhhccCcc-cchhhhhHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhHHHhhccCchh
Q psy10441 467 ANYFFWYLTIESEDQD-FTIKQDIRVREMYANVKNIFLQTLQHGPSESHKINSYLIKQQSFIEKLVNLVKIVARESGNRK 545 (867)
Q Consensus 467 ~~~l~W~L~~e~~~~~-~~~~~~~~~~~~y~~v~~~~~~~l~~~~~~~~~~~~~l~~Q~~~~~~L~~i~~~v~~~~~~~~ 545 (867)
||+|.|++++++-..+ ... + +.+++.+..+ .+.+..+-. +..++.+.|+.+|+++++.|...++.-+.. .
T Consensus 1402 aHqliWnm~~n~y~d~~~~~-~-~~~~~~l~~~----~e~i~~~~s--~~a~df~~rEf~ff~~vT~ISg~l~P~~k~-~ 1472 (1803)
T KOG0902|consen 1402 AHQLIWNMKANLYVDEEAIV-K-ADIGEILDRV----REEITGSLS--GPARDFYEREFDFFNKVTSISGKLKPYPKG-D 1472 (1803)
T ss_pred HHHHHHHhhhhhcccccccc-c-hhHHHHHHHH----HHHHHhcCC--chhhHHHHHHhHHHHHhhhccceeecCCCc-H
Confidence 9999999999984332 222 1 3455555444 444444433 356889999999999999999887643321 1
Q ss_pred hhHHHHHHHhhccccccccccCCCCcccCCCCcEEEEEEeeCceeeecCC-CcceEEEEEe----cCCCe----------
Q psy10441 546 RKIDRLQALLADSETFKFNFTNFEPLPLPLDPNVYIKGIIPEKATLFKSN-LMPSRLTFLT----TTGTE---------- 610 (867)
Q Consensus 546 ~k~e~L~~~l~~~~~~~~~~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~-~~P~~l~f~~----~dG~~---------- 610 (867)
.|..++.+.|++. .+. +.++||.+|+..|.+|+.+..+.++|+ +.|...+|+. .||..
T Consensus 1473 erk~~i~~~l~ki-----k~~--~~~YlPs~P~~~v~~i~~~Sg~plQS~aK~PfmatF~vkr~~~~g~~~~~k~~~~~W 1545 (1803)
T KOG0902|consen 1473 ERKKAILEELSKI-----KVQ--PGCYLPSNPDAVVLDIDYKSGTPLQSAAKAPFMATFKVKRLEKDGLQCRSKSQKISW 1545 (1803)
T ss_pred HHHHHHHHHHHhh-----ccc--CceecCCCCCceEEEeecCCCccchhhccCCeeEEEeeeeccCCcccccccccchhh
Confidence 1122333444443 232 479999999999999999999999997 6999999998 45521
Q ss_pred EEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcceeeeecCccHHHHHhhc--CcHHHHHHhhC
Q psy10441 611 YVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVDSFPVAEVLATE--GSIQNFFRKHH 688 (867)
Q Consensus 611 ~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~s~tl~~I~~~~--~~l~~~l~~~~ 688 (867)
...|||.|||+|||+|++|+|.+|.+||+..|+|+++.||+|+||+++||+||+||+..-++.+++. +++.+||...+
T Consensus 1546 Qa~IFKvGDDcRQD~LaLQiislf~~if~~~gLd~~lfPYrV~aT~pGcGVIEviPn~~SRdqlGr~t~~glyeyF~~~~ 1625 (1803)
T KOG0902|consen 1546 QAAIFKVGDDCRQDMLALQIISLFKNIFQLVGLDLYLFPYRVVATAPGCGVIEVIPNSKSRDQLGRETDNGLYEYFTRKY 1625 (1803)
T ss_pred hhhhhhcCchHHHHHHHHHHHHHHHHHHHHcCCceEEeeeeeeccCCCCceEEeCCCCccHHHhcccccccHHHHHHHhc
Confidence 2589999999999999999999999999999999999999999999999999999955556777655 78999998877
Q ss_pred CCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEEEEeeccccCCCCCC---CCCcccccHHHHH
Q psy10441 689 PSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHIDFGYILGRDPKP---LPPPMKLSKEMVE 765 (867)
Q Consensus 689 ~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lfHIDFG~ilg~~~k~---e~vPFrLT~~mv~ 765 (867)
..++. .++ ++||.||++|+|||||++|+|+++||||+|||||+.||++||||||||...|+. +.+|||||+||+.
T Consensus 1626 G~~~s-~~f-q~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~Dd~G~~iHIDFGf~~e~sPGgnl~fE~~fKLt~Em~~ 1703 (1803)
T KOG0902|consen 1626 GDESS-EAF-QTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMIDDQGHIIHIDFGFMFESSPGGNLGFEPPFKLTKEMVM 1703 (1803)
T ss_pred Cccch-HHH-HHHHHHHHHHHHHHHHHHHHcccccccCCceeEccCCCEEEEeeeeEEecCCCCccCcCCCccchHHHHH
Confidence 65432 222 579999999999999999999999999999999999999999999999999865 3459999999999
Q ss_pred HhCCCC-chhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q psy10441 766 AMGGIN-SEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIALEPDKAVKKVQDKFRLDLGDEEAVHYLQNLID 844 (867)
Q Consensus 766 ~mGg~~-~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~~~~~~~~i~~l~~~l~l~lseeeA~~~~~~lI~ 844 (867)
+|||.. +..|+.|.++|++||++.|+|.+-|+.++++|+++|+||++. ++|..++.||++++||.||..++..+|.
T Consensus 1704 ~mgG~~~~~~f~~f~elcVk~yLA~R~~~~~iv~~V~~mldsgLPCfrg---~~i~nl~~RF~pemsereAa~fm~~vi~ 1780 (1803)
T KOG0902|consen 1704 LMGGKMEAKPFKWFQELCVKGYLAARPYMDAIVSLVQSMLDSGLPCFRG---QTIGNLRARFAPEMSEREAALFMLSVIT 1780 (1803)
T ss_pred HhCCCCCCCcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhcCCCccCc---chHHHHHHhhCcccchHHHHHHHHHHHH
Confidence 999975 889999999999999999999999999999999999999964 4899999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHH
Q psy10441 845 LSVTAVMAALVEQLHKFAQ 863 (867)
Q Consensus 845 ~s~~s~~t~i~d~~h~~aq 863 (867)
+|.++++|..||+++++.|
T Consensus 1781 ~~~~~~rt~~YD~~Q~~~n 1799 (1803)
T KOG0902|consen 1781 DSYLKIRTKMYDQIQYLQN 1799 (1803)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999876
No 16
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=1.8e-77 Score=649.43 Aligned_cols=286 Identities=31% Similarity=0.535 Sum_probs=268.5
Q ss_pred ccCCCCcEEEEEEeeCceeeecCC-CcceEEEEEecCCC-------------eEEEEEeeCCchhhHHHHHHHHHHHHHH
Q psy10441 572 PLPLDPNVYIKGIIPEKATLFKSN-LMPSRLTFLTTTGT-------------EYVAIFKHGDDLRQDQLILQIITLMDKL 637 (867)
Q Consensus 572 ~lPl~p~~~i~~i~~~~~~v~~S~-~~P~~l~f~~~dG~-------------~~~~i~K~GDDLRqD~l~lQli~lmd~l 637 (867)
+||+||++.|.||++++|++|+|+ ++|++++|++.|+. .+.+|||.|||||||++++|+|++||+|
T Consensus 1 ylP~~P~~~v~~i~~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~gDDLRQD~l~~Qli~lm~~i 80 (311)
T cd05167 1 YLPSNPDYVIVGIDYKSGTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVGDDCRQDMLALQLISLFKNI 80 (311)
T ss_pred CCCCCCceEEEEEEccccEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeCCCCccHHHHHHHHHHHHHHH
Confidence 589999999999999999999998 68999999998763 4999999999999999999999999999
Q ss_pred HHhCCCCCcccccEEEEecCCcceeeeec-CccHHHHHhhc-CcHHHHHHhhCCCCC-CCCCCcHHHHHHHHHhhhhHHH
Q psy10441 638 LRSENLDLKLTPYRVLATNTKHGFVQFVD-SFPVAEVLATE-GSIQNFFRKHHPSDN-GPYGISSEIMDTYVRSCAGYCV 714 (867)
Q Consensus 638 l~~~~ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~I~~~~-~~l~~~l~~~~~~~~-~~~~~~~~a~~~F~~S~A~ysv 714 (867)
|+++++|++++||+|+|||+++||||||+ +.|+++|.+.. +.+.+||.+.++.+. ..| .+|++||++|||||||
T Consensus 81 ~~~~~ldl~l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~~~~~l~~~f~~~~~~~~~~~~---~~a~~nF~~S~Agysv 157 (311)
T cd05167 81 FQSAGLDLYLFPYRVVATGPGCGVIEVVPNSKSRDQIGRTTDNGLYEYFTSKYGDESSLAF---QKARENFIRSMAAYSL 157 (311)
T ss_pred HHHCCCCeEeEEEeEEecCCCceEEEEeCCcHHHHHHHhhcccHHHHHHHHHcCCCCcHHH---HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 99999998764 689999998765432 122 4699999999999999
Q ss_pred HHhhhccCCCCCcceeEecCCCEEEEeeccccCCCCC----CCCCcccccHHHHHHhCCCC-chhHHHHHHHHHHHHHHH
Q psy10441 715 ITYILGVGDRHFDNLLLTTSGKLFHIDFGYILGRDPK----PLPPPMKLSKEMVEAMGGIN-SEHYHEFRKQCYTAFLHL 789 (867)
Q Consensus 715 ~tYiLGIGDRH~dNIli~~tG~lfHIDFG~ilg~~~k----~e~vPFrLT~~mv~~mGg~~-~~~~~~F~~~c~~a~~~L 789 (867)
+||||||||||+|||||+++||+|||||||+||++|+ +|+||||||++|+++|||.+ ++.|+.|+++|++||++|
T Consensus 158 ~tYiLgigDRHn~NILid~~G~l~HIDFG~il~~~p~~~~~~E~~PFkLT~emv~~mGg~~~s~~f~~F~~~~~~~~~~l 237 (311)
T cd05167 158 ISYLLQIKDRHNGNIMIDDDGHIIHIDFGFIFEISPGGNLKFESAPFKLTKEMVQIMGGSMEATPFKWFVELCVRAFLAV 237 (311)
T ss_pred HHHHhhccccCccceEEcCCCCEEEEeeHHhhccCCCCCCCcCCCCEeecHHHHHHhCCCCcchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875 48999999999999999998 888999999999999999
Q ss_pred hcChhHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy10441 790 RRHSNLILNLFTLMVDASVPDIALEPDKAVKKVQDKFRLDLGDEEAVHYLQNLIDLSVTAVMAALVEQLHKFAQ 863 (867)
Q Consensus 790 R~~~~lil~l~~lml~~~ip~~~~~~~~~i~~l~~~l~l~lseeeA~~~~~~lI~~s~~s~~t~i~d~~h~~aq 863 (867)
|+|+++|++++++|+++++||++ .++|.++++||+|++||+||.++|.++|++|+++++|++||.+|++.|
T Consensus 238 R~~~~~il~l~~lm~~s~lp~~~---~~~i~~l~~rf~l~~se~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~ 308 (311)
T cd05167 238 RPYMDEIVSLVELMLDSGLPCFR---GDTIKNLRQRFAPEKSEREAAEFMLSLIAESYEKFRTKGYDQFQYYQN 308 (311)
T ss_pred HcCHHHHHHHHHHHHcCCchhhh---HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhc
Confidence 99999999999999999999998 467999999999999999999999999999999999999999999986
No 17
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=1.1e-70 Score=592.12 Aligned_cols=276 Identities=31% Similarity=0.544 Sum_probs=256.8
Q ss_pred EeeCceeeecCCC-cceEEEEEecCCC--eEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcc
Q psy10441 584 IIPEKATLFKSNL-MPSRLTFLTTTGT--EYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHG 660 (867)
Q Consensus 584 i~~~~~~v~~S~~-~P~~l~f~~~dG~--~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~G 660 (867)
+.+-.+++++|++ .|.++.|...||. .+.+|||.|||||||++++|++++||++|+++++|++++||+|+|||+++|
T Consensus 3 ~~~~~~k~~~~~~~~P~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~l~l~l~~Y~vi~~s~~~G 82 (289)
T cd00893 3 KIYISPKILQSALKIPYLELKKLTDSTLINSEFIVKCGDDLRQDILATQIITELQKIFELMFLDLWLNPYLVLPVSKTGG 82 (289)
T ss_pred cccccchHHHHhhcCchhhccCccCCCCeeEEEEEECCCcccHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCce
Confidence 5567789999995 7999999998874 899999999999999999999999999999999999999999999999999
Q ss_pred eeeeec-CccHHHHHhhc-CcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEE
Q psy10441 661 FVQFVD-SFPVAEVLATE-GSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLF 738 (867)
Q Consensus 661 lIE~V~-s~tl~~I~~~~-~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lf 738 (867)
|||||+ +.|+++|++++ +++.+|+.+.+.++... ...+|++||++|||||||+||||||||||+|||||+++||+|
T Consensus 83 lIE~V~ns~tl~~i~~~~~~~l~~~~~~~~~~~~~~--~~~~a~~nF~~SlA~ySvv~YiLgigDRH~~NILid~~G~li 160 (289)
T cd00893 83 IIEFIPNSISIHEIKKQQINSLYDYFLELYGSYTTE--AFLQARYNFIESMAGYSLLCYLLQIKDRHNGNILLDSDGHII 160 (289)
T ss_pred eEEEeCCchhHHHHHHhccccHHHHHHHHcCCCCcH--HHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEECCCCCEE
Confidence 999998 99999999876 57889988776643221 124699999999999999999999999999999999999999
Q ss_pred EEeeccccCCCCCC----CCCcccccHHHHHHhCCCCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCCCCC
Q psy10441 739 HIDFGYILGRDPKP----LPPPMKLSKEMVEAMGGINSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIALE 814 (867)
Q Consensus 739 HIDFG~ilg~~~k~----e~vPFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~~~~ 814 (867)
|||||++||++|++ |+||||||++|+++|||.++++|+.|+.+|+.||.+||+|++.|++++++|+.+++||++
T Consensus 161 HIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mGg~~s~~f~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~-- 238 (289)
T cd00893 161 HIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMGGKKSDDFKKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFR-- 238 (289)
T ss_pred EEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhCCCCChhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccC--
Confidence 99999999999875 899999999999999999999999999999999999999999999999999999999998
Q ss_pred chHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy10441 815 PDKAVKKVQDKFRLDLGDEEAVHYLQNLIDLSVTAVMAALVEQLHKFAQY 864 (867)
Q Consensus 815 ~~~~i~~l~~~l~l~lseeeA~~~~~~lI~~s~~s~~t~i~d~~h~~aq~ 864 (867)
.+++.++++||++++||++|.++|.++|++|+++++|.+||.+|++.|-
T Consensus 239 -~~~i~~l~~r~~l~~s~~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~g 287 (289)
T cd00893 239 -GSTIKKLKERLCLNMSEKEAINTVMKKIDSSYNSITTKLYDKVQYYQNG 287 (289)
T ss_pred -HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC
Confidence 3679999999999999999999999999999999999999999998863
No 18
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=100.00 E-value=4.4e-68 Score=573.11 Aligned_cols=266 Identities=28% Similarity=0.543 Sum_probs=245.4
Q ss_pred CCcceEEEEEecCC--CeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcceeeeec-CccHH
Q psy10441 595 NLMPSRLTFLTTTG--TEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVD-SFPVA 671 (867)
Q Consensus 595 ~~~P~~l~f~~~dG--~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~ 671 (867)
+.+|+..+..++.+ +.+.+|||.|||||||+++||+|++||.||+++++|++++||+|+|||+++||||||+ +.|++
T Consensus 15 ~~r~r~~s~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~~~~~i~~~~~l~l~l~~Y~vip~~~~~GlIE~V~ns~tl~ 94 (293)
T cd05168 15 KERIRKSSPYGHLKSWDLRSVIVKTGDDLRQELLAMQLIQQFDRIFKEEGLPLWLRPYEILVTSSNSGLIETIPDTVSID 94 (293)
T ss_pred HHHhhhcCccCcCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCceeeeEEEEEccCCceeEEEeCCchhHH
Confidence 34666666666554 4799999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHHhhcC----cHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEEEEeeccccC
Q psy10441 672 EVLATEG----SIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHIDFGYILG 747 (867)
Q Consensus 672 ~I~~~~~----~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lfHIDFG~ilg 747 (867)
+|+++++ ++.+||.+.++++...| .+|++||++|||||||+||||||||||+|||||+++||+||||||++||
T Consensus 95 ~i~k~~~~~~~~l~~~f~~~~~~~~~~~---~~a~~nF~~S~A~ySvv~YvLGigDRH~~NILi~~~G~liHIDFG~~fg 171 (293)
T cd05168 95 SLKKKLTSKFKSLLDFFKKTFGDPSERF---REAQKNFIESLAGYSLICYLLQIKDRHNGNILIDNDGHIIHIDFGFMLS 171 (293)
T ss_pred HHHHHhccCCchHHHHHHHHcCCCcHHH---HHHHHHHHHHHHHHHHHHHHhhccccCCCceEEcCCCCEEEEehHHhhc
Confidence 9998864 79999998877643223 3699999999999999999999999999999999999999999999999
Q ss_pred CCCC---CCCCcccccHHHHHHhCCCCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcC-CCCCCCCCchHHHHHHH
Q psy10441 748 RDPK---PLPPPMKLSKEMVEAMGGINSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDA-SVPDIALEPDKAVKKVQ 823 (867)
Q Consensus 748 ~~~k---~e~vPFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~-~ip~~~~~~~~~i~~l~ 823 (867)
++|+ +|+||||||++|+++|||.+++.|+.|+.+|+.||++||+|++.|++++++|+.+ ++||+.. +..++.+++
T Consensus 172 ~~~~~~~~E~vPFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~-~~~~i~~l~ 250 (293)
T cd05168 172 NSPGNVGFETAPFKLTQEYIEVMGGVNSDLFNYFKKLFLKGFMALRKHVDRIILLVEIMQSDSKLPCFKA-GEFTIQQLR 250 (293)
T ss_pred ccccCCCCCCCCEEecHHHHHHhCCCCCchhHHHHHHHHHHHHHHHhchHHHHHHHHHHccCCCCccccC-chHHHHHHH
Confidence 9876 4799999999999999999999999999999999999999999999999999998 9999985 567799999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy10441 824 DKFRLDLGDEEAVHYLQNLIDLSVTAVMAALVEQLHKFAQY 864 (867)
Q Consensus 824 ~~l~l~lseeeA~~~~~~lI~~s~~s~~t~i~d~~h~~aq~ 864 (867)
+||++++||++|.++|+++|++|+++++|++||.+|+++|-
T Consensus 251 ~r~~l~~se~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~g 291 (293)
T cd05168 251 DRFMLNLTEEQLEVFVDELINQSLDNWRTRLYDKFQYLTNG 291 (293)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999873
No 19
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=1e-56 Score=473.69 Aligned_cols=224 Identities=28% Similarity=0.511 Sum_probs=210.0
Q ss_pred EEEEeeCceeeecCCCcceEEEEEecCCCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhC----CCCCcccccEEEEec
Q psy10441 581 IKGIIPEKATLFKSNLMPSRLTFLTTTGTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSE----NLDLKLTPYRVLATN 656 (867)
Q Consensus 581 i~~i~~~~~~v~~S~~~P~~l~f~~~dG~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~----~ldl~l~~Y~Vip~~ 656 (867)
|.+|.+ .++|++|+++|++++|.++||+.|.+|+|.|||||||+++||++++||.+|+++ ++++.+++|+|+|++
T Consensus 1 i~~~~~-~v~v~~S~~~Pkri~~~~~dG~~~~fl~K~~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vipls 79 (235)
T cd05172 1 IVGFDE-RVLVLSSLRKPKRITIRGSDEKEYPFLVKGGEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIPMT 79 (235)
T ss_pred CCCcCC-ceEEeccCCCCEEEEEECCCCCEEEEEEECCCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEEeC
Confidence 346664 789999999999999999999999999999999999999999999999999975 689999999999999
Q ss_pred CCcceeeeec-CccHHHHHhhcCcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEe-cC
Q psy10441 657 TKHGFVQFVD-SFPVAEVLATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLT-TS 734 (867)
Q Consensus 657 ~~~GlIE~V~-s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~-~t 734 (867)
+++||||||+ +.|+.+|+++ +.+.+||.+.++++..|+ +++++|++|||+||++||||||||||++||||+ +|
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~-~~l~~~~~~~~~~~~~~~----~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~t 154 (235)
T cd05172 80 PRFGLIEWLENTTPLKEILKN-DLLRRALVEMSASPEAFL----SLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLET 154 (235)
T ss_pred CCCceEEEcCCchhHHHHHhh-HHHHHHHHHHCCCHHHHH----HHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCC
Confidence 9999999998 9999999986 678999998888876665 489999999999999999999999999999999 59
Q ss_pred CCEEEEeeccccCCCCC----CCCCcccccHHHHHHhCCCCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCC
Q psy10441 735 GKLFHIDFGYILGRDPK----PLPPPMKLSKEMVEAMGGINSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPD 810 (867)
Q Consensus 735 G~lfHIDFG~ilg~~~k----~e~vPFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~ 810 (867)
|+++|||||++||++++ ||+||||||++|+++||+.+.+| .|+..|+.++.+||++++.|++++++++.+++-+
T Consensus 155 G~v~HIDfg~~f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~~G--~f~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~ 232 (235)
T cd05172 155 GGLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKADG--LLRSCMVHTLRALRNERHLLLSTMDVFVKEPSLD 232 (235)
T ss_pred CcEEEEeeHhhhccCCccCCCCCCCCeeeCHHHHHHhCCCCCCC--hHHHHHHHHHHHHHcCHHHHHHHHHHHhhCchhh
Confidence 99999999999999864 78999999999999999999998 8999999999999999999999999999999888
Q ss_pred CC
Q psy10441 811 IA 812 (867)
Q Consensus 811 ~~ 812 (867)
|.
T Consensus 233 w~ 234 (235)
T cd05172 233 WK 234 (235)
T ss_pred hc
Confidence 74
No 20
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=2.9e-56 Score=471.06 Aligned_cols=224 Identities=26% Similarity=0.533 Sum_probs=210.5
Q ss_pred EEEeeCceeeecCCCcceEEEEEecCCCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhC----CCCCcccccEEEEecC
Q psy10441 582 KGIIPEKATLFKSNLMPSRLTFLTTTGTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSE----NLDLKLTPYRVLATNT 657 (867)
Q Consensus 582 ~~i~~~~~~v~~S~~~P~~l~f~~~dG~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~----~ldl~l~~Y~Vip~~~ 657 (867)
.+|. ++++|++|+++|++|+|.++||+.|.+|+|.|||||||++++|++++||.+|+++ ++++.++||+|+|+|+
T Consensus 2 ~~~~-~~~~v~~s~~~P~~i~~~~~dG~~~~~l~K~~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl~~ 80 (237)
T cd00892 2 SGFE-DEVEILNSLQKPKKITLIGSDGNSYPFLCKPKDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPLNE 80 (237)
T ss_pred cccc-CeEEEEeccCCceEEEEEcCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEcCC
Confidence 3555 5789999999999999999999999999999999999999999999999999998 7999999999999999
Q ss_pred Ccceeeeec-CccHHHHHhhc--CcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEec-
Q psy10441 658 KHGFVQFVD-SFPVAEVLATE--GSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTT- 733 (867)
Q Consensus 658 ~~GlIE~V~-s~tl~~I~~~~--~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~- 733 (867)
++||||||+ +.|+.+|++++ ..+.+|+.+.++++..|+ +++++|+.|||+|||+||||||||||++||||++
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~ 156 (237)
T cd00892 81 ECGIIEWVPNTATLRSILLEIYPPVFHEWFLENFPDPSAWL----KARNAYTRSTAVMSMVGYILGLGDRHGENILFDSN 156 (237)
T ss_pred CCceEEECCCCccHHHHHHHhCCHHHHHHHHHHCcCHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcC
Confidence 999999998 89999999975 468899999888866554 4799999999999999999999999999999997
Q ss_pred CCCEEEEeeccccCCC---CCCCCCcccccHHHHHHhCCCCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCC
Q psy10441 734 SGKLFHIDFGYILGRD---PKPLPPPMKLSKEMVEAMGGINSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPD 810 (867)
Q Consensus 734 tG~lfHIDFG~ilg~~---~k~e~vPFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~ 810 (867)
+|+++|||||++||.+ ++||+||||||++|+++||+.+.+| .|+..|+.++.+||+|++.|++++++|+.+++-+
T Consensus 157 tG~~~HIDfg~~~~~~~~~~~pe~vPFRLT~~~~~~lg~~g~~g--~F~~~~~~~~~~Lr~~~~~l~~~l~~fi~dpl~~ 234 (237)
T cd00892 157 TGDVVHVDFNCLFDKGETLEVPERVPFRLTQNMVDAMGVLGVEG--LFRKSCEVTLRLLRSNKETLMSVLETFIHDPLVE 234 (237)
T ss_pred CCcEEEEehHhhhcccccCCCCCCCCcccCHHHHHHhCCCCCCC--chHHHHHHHHHHHHhCHHHHHHHHHHHhhccchh
Confidence 9999999999999987 4689999999999999999999987 8999999999999999999999999999999988
Q ss_pred CC
Q psy10441 811 IA 812 (867)
Q Consensus 811 ~~ 812 (867)
|.
T Consensus 235 w~ 236 (237)
T cd00892 235 WS 236 (237)
T ss_pred cc
Confidence 85
No 21
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=100.00 E-value=1.3e-54 Score=470.44 Aligned_cols=224 Identities=26% Similarity=0.473 Sum_probs=202.4
Q ss_pred EEEeeCceeeecCCCcceEEEEEecCCCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCC----CCCcccccEEEEecC
Q psy10441 582 KGIIPEKATLFKSNLMPSRLTFLTTTGTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSEN----LDLKLTPYRVLATNT 657 (867)
Q Consensus 582 ~~i~~~~~~v~~S~~~P~~l~f~~~dG~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~----ldl~l~~Y~Vip~~~ 657 (867)
.+|.+ ++.|++|+++|++|+|.++||+.|.+|+|.|||||||++++|++++||.+|++++ +++.+++|.|||+|+
T Consensus 2 ~~f~~-~v~v~~s~~~pk~i~~~gsdG~~y~fl~K~~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls~ 80 (280)
T cd05169 2 SSFDP-VLKVIPSKQRPRRLTIVGSDGKEYKFLLKGHEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLSP 80 (280)
T ss_pred ccccC-eEEEEeCCCCCeEEEEECCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecCC
Confidence 45664 6899999999999999999999999999999999999999999999999999985 899999999999999
Q ss_pred Ccceeeeec-CccHHHHHhhcC--------------------------------------------cHHHHHHhhCCCCC
Q psy10441 658 KHGFVQFVD-SFPVAEVLATEG--------------------------------------------SIQNFFRKHHPSDN 692 (867)
Q Consensus 658 ~~GlIE~V~-s~tl~~I~~~~~--------------------------------------------~l~~~l~~~~~~~~ 692 (867)
++||||||+ +.|+.+|++++. .+.+||....+++.
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~i~~~~~~~~l~~~~~~~~~~~~ 160 (280)
T cd05169 81 NVGLIGWVPGCDTLHSLIREYRKKRNIPLNLEHRLMELKSAPDYDNLTLIQKLEVFEYALNNTPGDDLRKILWLKSPSSE 160 (280)
T ss_pred CcceEEeCCCCchHHHHHHHHHHHcCCChhHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHH
Confidence 999999998 899999986430 13344444455544
Q ss_pred CCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEec-CCCEEEEeeccccCCCC----CCCCCcccccHHHHHHh
Q psy10441 693 GPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTT-SGKLFHIDFGYILGRDP----KPLPPPMKLSKEMVEAM 767 (867)
Q Consensus 693 ~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~-tG~lfHIDFG~ilg~~~----k~e~vPFrLT~~mv~~m 767 (867)
.|+ +++++|++|||+|||+||||||||||++||||++ ||+++|||||++||.++ .||+||||||++|+++|
T Consensus 161 ~w~----~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~~~~~l 236 (280)
T cd05169 161 AWL----ERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRMLVNAL 236 (280)
T ss_pred HHH----HHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHHHHHHh
Confidence 443 5899999999999999999999999999999997 99999999999998774 46899999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCCC
Q psy10441 768 GGINSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIA 812 (867)
Q Consensus 768 Gg~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~~ 812 (867)
|+.+.+| .|+..|+.++.+||+|++.|++++++|+.+++-+|.
T Consensus 237 G~~g~~G--~F~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~W~ 279 (280)
T cd05169 237 GVSGIEG--TFRTTCEDVMNVLRENKESLMAVLEAFVHDPLLSWR 279 (280)
T ss_pred CCCCCCC--chHHHHHHHHHHHhcChHHHHHHHHHHHhCcccccc
Confidence 9999997 899999999999999999999999999999999986
No 22
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=100.00 E-value=5.7e-54 Score=449.48 Aligned_cols=210 Identities=40% Similarity=0.728 Sum_probs=197.3
Q ss_pred eeCceeeecCCCcceEEEEEecCCCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhC-CCCCcccccEEEEecCCcceee
Q psy10441 585 IPEKATLFKSNLMPSRLTFLTTTGTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSE-NLDLKLTPYRVLATNTKHGFVQ 663 (867)
Q Consensus 585 ~~~~~~v~~S~~~P~~l~f~~~dG~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~-~ldl~l~~Y~Vip~~~~~GlIE 663 (867)
..+.++|++|+++|++|+|+++||+.|.+|+|.|||||||++++|++++||.+|+++ ++++++++|+|+|+|+++|+||
T Consensus 4 ~~~~~~v~~s~~~P~~l~~~~~dg~~~~~l~K~~ddlR~D~~~~ql~~~~n~il~~~~~~~l~~~~y~vipls~~~GlIE 83 (219)
T cd00142 4 DVKICRIMPSKTRPKKLTLIGADGKEYRILFKNGDDLRQDERVLQFIRLMNKILKKELGLDLFLTTYSVIPLSPRSGLIE 83 (219)
T ss_pred cCCceEEEcccCCCEEEEEEccCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhCCCCCceEEeEEEEEecCCceEEE
Confidence 346899999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred eec-CccHHHHHhhcCcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEec-CCCEEEEe
Q psy10441 664 FVD-SFPVAEVLATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTT-SGKLFHID 741 (867)
Q Consensus 664 ~V~-s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~-tG~lfHID 741 (867)
||+ +.|+. +.+.+|+...++++..|+ +++++|+.|||+||++||||||||||++||||++ +|+++|||
T Consensus 84 ~v~~~~sl~------~~l~~~~~~~~~~~~~~~----~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hID 153 (219)
T cd00142 84 VVPGSVTLE------DDLSKWLKRKSPDEDEWQ----EARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHID 153 (219)
T ss_pred EeCCCchhH------HHHHHHHHHHCcCHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEEe
Confidence 998 89998 467789999888866554 5899999999999999999999999999999997 99999999
Q ss_pred eccccCCCCC---CCCCcccccHHHHHHhCCCCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcC
Q psy10441 742 FGYILGRDPK---PLPPPMKLSKEMVEAMGGINSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDA 806 (867)
Q Consensus 742 FG~ilg~~~k---~e~vPFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~ 806 (867)
||++||++|+ +|+||||||++|+++||+.+.+| .|+..|+.++.+||+|++.|++++++|+++
T Consensus 154 fg~~~~~~~~~~~~e~vPFRLT~~~~~~~g~~~~~g--~F~~~~~~~~~~lr~~~~~i~~ll~~~~~~ 219 (219)
T cd00142 154 FGFIFGKRKKFLGRERVPFRLTPDLVNALGTGGVFG--PFRSLCVKAMLILRRHAGLLLNLLSLMLRD 219 (219)
T ss_pred eHHhhCcCcCCCCCCCCCEeccHHHHHHhCCcchhh--hHHHHHHHHHHHHHhChHHHHHHHHHhccC
Confidence 9999999986 48999999999999999987665 999999999999999999999999999864
No 23
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=5.5e-53 Score=549.39 Aligned_cols=394 Identities=29% Similarity=0.440 Sum_probs=303.5
Q ss_pred HHHHHHHHHhcCc--chhhHHHHHhhhhccCcccchhhhhHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHH
Q psy10441 452 LTSFLIHRASKSL--TLANYFFWYLTIESEDQDFTIKQDIRVREMYANVKNIFLQTLQHGPSESHKINSYLIKQQSFIEK 529 (867)
Q Consensus 452 La~fLi~ra~~n~--~i~~~l~W~L~~e~~~~~~~~~~~~~~~~~y~~v~~~~~~~l~~~~~~~~~~~~~l~~Q~~~~~~ 529 (867)
|+.++-+++..+. .++.-..|.+..+...-.... . ...... .-...+.++. + ...+..+..+....+.
T Consensus 1643 l~q~~~r~~~~~~~i~~~~~~~~~l~~~~~~~~~~~-~--~~s~~~-~~~~~~~~~~----~--~~~~~~~~~D~~~~~~ 1712 (2105)
T COG5032 1643 LAQLLSRLSSENNKISVALLIDKPLHEERENFPSGL-S--LSSFQS-SFLKELIKKS----P--RKIRKKFKIDISLLNL 1712 (2105)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhccccccc-c--chhHHH-HHHHHHHhhh----H--HHHHHHHHhhhhhhhh
Confidence 8888999999888 578899999998876543110 0 000000 1112222211 0 1223334444444443
Q ss_pred HHHHh-HHHhhccCchhhhHHHHHHHhhccccccccccC----CCCcccCCC-CcEEEEEEeeCceeeecCCCcceEEEE
Q psy10441 530 LVNLV-KIVARESGNRKRKIDRLQALLADSETFKFNFTN----FEPLPLPLD-PNVYIKGIIPEKATLFKSNLMPSRLTF 603 (867)
Q Consensus 530 L~~i~-~~v~~~~~~~~~k~e~L~~~l~~~~~~~~~~~~----~~~~~lPl~-p~~~i~~i~~~~~~v~~S~~~P~~l~f 603 (867)
...+. ..+++-+.......+..... ..+. ...+.. ..|...+.+ |.+.|.+|.|+...+.++.++|+++++
T Consensus 1713 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~e~~~P~~~~~~k~~v~I~~f~p~~~~~~~~~~~p~rl~~ 1789 (2105)
T COG5032 1713 SRKLYISVLRSIRKRLKRLLELRLKK-VSPK--LLLFHAFLEIKLPGQYLLDKPFVLIERFEPEVSVVKSHLQRPRRLTI 1789 (2105)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHhcc-cCHH--HHhccccccccCCcccccCCCCceEEEecCceeeeecccccceEEEE
Confidence 33333 22221111111111111100 0000 001111 123444444 889999999987666555999999999
Q ss_pred EecCCCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCC----CCcccccEEEEecCCcceeeeec-CccHHHHHhhc-
Q psy10441 604 LTTTGTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENL----DLKLTPYRVLATNTKHGFVQFVD-SFPVAEVLATE- 677 (867)
Q Consensus 604 ~~~dG~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~l----dl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~I~~~~- 677 (867)
+|+||+.|++++|+|||||||+++||++++||++|++++. |++++||+|+|||+++|+||||| +.|+++|++++
T Consensus 1790 rgsdG~~y~~i~K~~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vipls~~~GiIe~vpn~~tl~sI~~~~~ 1869 (2105)
T COG5032 1790 RGSDGKLYSFIVKGGDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIPLSPGSGIIEWVPNSDTLHSILREYH 1869 (2105)
T ss_pred EecCCcEEEEEeecCccchHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeEeccCCcceEEEecCcchHHHHHHHHh
Confidence 9999999999999999999999999999999999999986 99999999999999999999999 79999998654
Q ss_pred -------------------------------------CcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhc
Q psy10441 678 -------------------------------------GSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILG 720 (867)
Q Consensus 678 -------------------------------------~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLG 720 (867)
..+.+||.+.++++.+|+ .+|+||++|||+|||+||+||
T Consensus 1870 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~~~~w~----~aR~Ny~~SlA~ySvigYiLg 1945 (2105)
T COG5032 1870 KRKNISIDQEKKLAARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFPNPEDWL----TARTNFARSLAVYSVIGYILG 1945 (2105)
T ss_pred hhcCCChhHHhhhhhhhhhhcccchhHHhhhhhcCCCchHHHHHHHhcCChhhHH----HHHHHHHHHHHHHHHHHHHcc
Confidence 134566777777766655 589999999999999999999
Q ss_pred cCCCCCcceeEec-CCCEEEEeeccccCCCCC----CCCCcccccHHHHHHhCCCCchhHHHHHHHHHHHHHHHhcChhH
Q psy10441 721 VGDRHFDNLLLTT-SGKLFHIDFGYILGRDPK----PLPPPMKLSKEMVEAMGGINSEHYHEFRKQCYTAFLHLRRHSNL 795 (867)
Q Consensus 721 IGDRH~dNIli~~-tG~lfHIDFG~ilg~~~k----~e~vPFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~l 795 (867)
+|||||+|||||+ +||++|||||++|+..|+ ||.||||||++|+++||+.+.+| .|+.+|+.+|.+||+|++.
T Consensus 1946 lgDRH~~NIliD~~sG~viHiDFg~il~~~p~~~~~pE~vPFrLT~~iv~~mg~~g~EG--~Fr~~c~~~~~~LRk~~~~ 2023 (2105)
T COG5032 1946 LGDRHPGNILIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRNIVEAMGVSGVEG--SFRELCETAFRALRKNADS 2023 (2105)
T ss_pred CCCcCCceEEEEcCCCcEEEehHHHHHhcCCCCCCCcccCcHhhhHHHHHhcCccchhh--HHHHHHHHHHHHHhccHHH
Confidence 9999999999998 999999999999988864 58999999999999999999998 5999999999999999999
Q ss_pred HHHHHHHHhcC------CCCCCCCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy10441 796 ILNLFTLMVDA------SVPDIALEPDKAVKKVQDKFRLDLGDEEAVHYLQNLIDLSVTAVMAALVEQLHKFAQY 864 (867)
Q Consensus 796 il~l~~lml~~------~ip~~~~~~~~~i~~l~~~l~l~lseeeA~~~~~~lI~~s~~s~~t~i~d~~h~~aq~ 864 (867)
|+++++.|+++ +.||....+..++..+.+||++++++.++..++.-+|.+++.+..|..+|..|..++|
T Consensus 2024 L~~~le~f~~d~l~~W~~~p~~~~~~~~~~~~v~~rf~~kl~~~~~~~~~~l~I~~sv~~li~~a~d~~~L~~~y 2098 (2105)
T COG5032 2024 LMNVLELFVRDPLIEWRRLPCFREIQNNEIVNVLERFRLKLSEKDAEKFVDLLINKSVESLITQATDPFQLATMY 2098 (2105)
T ss_pred HHHHHHHHhcCcchhhhcCccccchHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHcCHHHHHhhc
Confidence 99999999999 8888874456778889999999999999999999999999999999999999999998
No 24
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=100.00 E-value=2.1e-53 Score=445.42 Aligned_cols=212 Identities=29% Similarity=0.597 Sum_probs=197.3
Q ss_pred EEEeeCceeeecCCCcceEEEEEecCCCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCC----CCCcccccEEEEecC
Q psy10441 582 KGIIPEKATLFKSNLMPSRLTFLTTTGTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSEN----LDLKLTPYRVLATNT 657 (867)
Q Consensus 582 ~~i~~~~~~v~~S~~~P~~l~f~~~dG~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~----ldl~l~~Y~Vip~~~ 657 (867)
.+|. +.++|++|+++|++|+|.++||+.|.+|+|.|||||||++++|++++||.+|++++ +++.++||.|+|+|+
T Consensus 2 ~~~~-~~v~v~~S~~~P~~i~~~~~dG~~~~fl~K~~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vipls~ 80 (222)
T cd05164 2 ASFD-DAVRILGSKQKPKKITLTGSDGKKYLFLVKGGEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIPLNS 80 (222)
T ss_pred cccc-CeeEEecccCCCEEEEEECCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEEcCC
Confidence 4566 46899999999999999999999999999999999999999999999999999987 899999999999999
Q ss_pred Ccceeeeec-CccHHHHHhhcCcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEec-CC
Q psy10441 658 KHGFVQFVD-SFPVAEVLATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTT-SG 735 (867)
Q Consensus 658 ~~GlIE~V~-s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~-tG 735 (867)
++||||||+ +.|+.++ +.+|+.+.++++..|+ +++++|+.|+|+||++||||||||||++||||++ ||
T Consensus 81 ~~GliE~v~~~~sl~~~------l~~~~~~~~~~~~~~~----~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~tG 150 (222)
T cd05164 81 RSGLIEWVEGTTTLKPV------LKKWFWLQFPDPEQWF----AARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETG 150 (222)
T ss_pred CCceEEEcCCcchHHHH------HHHHHHHHCcCHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCCC
Confidence 999999998 8999865 5568888888876665 4799999999999999999999999999999997 99
Q ss_pred CEEEEeeccccCCCC---CCCCCcccccHHHHHHhCCCCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcC
Q psy10441 736 KLFHIDFGYILGRDP---KPLPPPMKLSKEMVEAMGGINSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDA 806 (867)
Q Consensus 736 ~lfHIDFG~ilg~~~---k~e~vPFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~ 806 (867)
+++|||||++||+++ .||+||||||++|+++||+.+.+| .|+..|+.++.+||+|++.|++++++++.+
T Consensus 151 ~v~hIDf~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~g~~G--~f~~~~~~~~~~Lr~~~~~l~s~l~~fv~d 222 (222)
T cd05164 151 EVVHIDFGCIFEKGKTLPVPELVPFRLTRNIINGMGITGVEG--LFRKICEQTLEVFRKHRDTLIAFLEVFVYD 222 (222)
T ss_pred cEEEEccHHhhccCCCCCCCCCCCEEeCHHHHHHhCCCCcCC--hHHHHHHHHHHHHHhCHHHHHHHHHHHhcC
Confidence 999999999999985 379999999999999999999887 899999999999999999999999998753
No 25
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=100.00 E-value=2.1e-53 Score=459.83 Aligned_cols=224 Identities=28% Similarity=0.518 Sum_probs=203.1
Q ss_pred EEEeeCceeeecCCCcceEEEEEecCCCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhC----CCCCcccccEEEEecC
Q psy10441 582 KGIIPEKATLFKSNLMPSRLTFLTTTGTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSE----NLDLKLTPYRVLATNT 657 (867)
Q Consensus 582 ~~i~~~~~~v~~S~~~P~~l~f~~~dG~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~----~ldl~l~~Y~Vip~~~ 657 (867)
.+|.+ ++.|+.|+++|++|++.++||+.|.+|+|.|||||||+++||++++||++|+++ ++++.+++|.|+|+|+
T Consensus 2 ~~f~~-~v~v~~s~~~Pkri~~~gsdG~~y~fl~K~~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls~ 80 (279)
T cd05171 2 SKFKD-VFTTAGGINAPKIITCVGSDGKKYKQLLKGGDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLSP 80 (279)
T ss_pred CCccC-eEEEecCCCCCEEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecCC
Confidence 35554 678999999999999999999999999999999999999999999999999987 6899999999999999
Q ss_pred Ccceeeeec-CccHHHHHhhc-C-------------------------------------------cHHHHHHhhCCCCC
Q psy10441 658 KHGFVQFVD-SFPVAEVLATE-G-------------------------------------------SIQNFFRKHHPSDN 692 (867)
Q Consensus 658 ~~GlIE~V~-s~tl~~I~~~~-~-------------------------------------------~l~~~l~~~~~~~~ 692 (867)
++||||||+ ++|+.+|++++ + .+.+||.+.++++.
T Consensus 81 ~~GLIe~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~i~~~~~p~l~~~f~~~~~~~~ 160 (279)
T cd05171 81 RAGILEWVDGTIPLGEYLVGATGAHERYRPGDWTARKCRKAMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKFLDPQ 160 (279)
T ss_pred CceEEEECCCChhHHHHHHHhhhcccccCccchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHhCcHHHHHHHHHHCcCHH
Confidence 999999998 99999997654 0 12345555555554
Q ss_pred CCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEe-cCCCEEEEeeccccCCC---CCCCCCcccccHHHHHHhC
Q psy10441 693 GPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLT-TSGKLFHIDFGYILGRD---PKPLPPPMKLSKEMVEAMG 768 (867)
Q Consensus 693 ~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~-~tG~lfHIDFG~ilg~~---~k~e~vPFrLT~~mv~~mG 768 (867)
.|+ ++++||++|||+|||+||||||||||++||||+ .||+++|||||++||++ +.||+||||||++|+++||
T Consensus 161 ~~~----~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~l~~pe~vPFRLT~~~~~~lg 236 (279)
T cd05171 161 DWF----ERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMG 236 (279)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcCCCCCCcCChhhhHHHHHHhC
Confidence 444 489999999999999999999999999999999 49999999999999987 4689999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCCC
Q psy10441 769 GINSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIA 812 (867)
Q Consensus 769 g~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~~ 812 (867)
+.|++| .|+..|+.++.+||++++.|++++++|+.+++-+|+
T Consensus 237 ~~g~~g--~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~dpl~~W~ 278 (279)
T cd05171 237 ITGVEG--VFRRCCEKTLEVLRDNKDAILTILEVLLYDPLYSWT 278 (279)
T ss_pred CCCCcc--hHHHHHHHHHHHHHcChHHHHHHHHHHHhCcccccc
Confidence 999987 899999999999999999999999999999999886
No 26
>KOG0903|consensus
Probab=100.00 E-value=1.1e-52 Score=477.61 Aligned_cols=252 Identities=28% Similarity=0.568 Sum_probs=233.3
Q ss_pred CeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcceeeeec-CccHHHHHhhc---CcHHHHH
Q psy10441 609 TEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVD-SFPVAEVLATE---GSIQNFF 684 (867)
Q Consensus 609 ~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~I~~~~---~~l~~~l 684 (867)
...++|+|+||||||+.++.|+|..|.+||.++|.++|++||+|+.||.+.||||.|. ++|+++|.++. ..+..||
T Consensus 586 dL~SVIVKtGdDLrQE~fA~Qli~~f~~IW~EegvplWlRpykIlvtss~sGLIEtI~da~SIHsIKk~l~~~~~l~~F~ 665 (847)
T KOG0903|consen 586 DLRSVIVKTGDDLRQELFAYQLISAFKDIWQEEGVPLWLRPYKILVTSSDSGLIETIVDAMSIHSIKKRLPNLASLRHFF 665 (847)
T ss_pred ceEEEeeecCchHHHHHHHHHHHHHHHHHHHHcCCcceeeeEEEEEEecCccceeeccchhhHHHHHHhcchhhhHHHHH
Confidence 5689999999999999999999999999999999999999999999999999999997 99999999875 3466677
Q ss_pred HhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEEEEeeccccCCCCC---CCCCcccccH
Q psy10441 685 RKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHIDFGYILGRDPK---PLPPPMKLSK 761 (867)
Q Consensus 685 ~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lfHIDFG~ilg~~~k---~e~vPFrLT~ 761 (867)
..+.+-.+..|. .|++||+.||||||++||+|+|+||||+|||||..||++||||||+|++.|+ .|.+|||||.
T Consensus 666 ~~~g~~NS~~yk---~AQrNFvqSlagYSLvcYlLQvKDRHNGNILiD~EGHIIHIDFGFmLsnsPgnvgFEsAPFKLT~ 742 (847)
T KOG0903|consen 666 AAFGKPNSEKYK---SAQRNFVQSLAGYSLVCYLLQVKDRHNGNILIDEEGHIIHIDFGFMLSNSPGNVGFESAPFKLTT 742 (847)
T ss_pred HHhCCCCcHHHH---HHHHHHHHHHHHHHHHHHhhhcccccCCceEecCCCCEEEEeeeeEecCCCCCcccccCchhhHH
Confidence 766543333332 4899999999999999999999999999999999999999999999999985 5899999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhc-CCCCCCCCCchHHHHHHHHHcCCCCCHHHHHHHHH
Q psy10441 762 EMVEAMGGINSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVD-ASVPDIALEPDKAVKKVQDKFRLDLGDEEAVHYLQ 840 (867)
Q Consensus 762 ~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~-~~ip~~~~~~~~~i~~l~~~l~l~lseeeA~~~~~ 840 (867)
|++++|||..++.|..|+.+|.++|.++|||++-|+.|.++|-+ +++||+.. ...++..+++||+|++||||+..++.
T Consensus 743 EylEvmgG~~~d~FdyfK~L~l~gf~a~RKhadrIv~lvEiMq~~S~~pCF~a-G~~Ti~nL~~RFhLslTEeq~~~lV~ 821 (847)
T KOG0903|consen 743 EYLEVMGGLDSDMFDYFKSLMLQGFMALRKHADRIVLLVEIMQDGSGMPCFRA-GERTIQNLRQRFHLSLTEEQCQDLVL 821 (847)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccc-ChHHHHHHHHHhcccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997 89999985 34789999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Q psy10441 841 NLIDLSVTAVMAALVEQLHKFAQY 864 (867)
Q Consensus 841 ~lI~~s~~s~~t~i~d~~h~~aq~ 864 (867)
.||..|.+|+.|++||.++++.+-
T Consensus 822 ~LI~kS~~S~~TrlYD~fQyitnG 845 (847)
T KOG0903|consen 822 SLISKSLDSITTRLYDSFQYITNG 845 (847)
T ss_pred HHHhhcccchhhhhhHHHHHHhcc
Confidence 999999999999999999998763
No 27
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=100.00 E-value=2.9e-51 Score=448.40 Aligned_cols=224 Identities=25% Similarity=0.495 Sum_probs=196.4
Q ss_pred EEEeeCceeeecCCCcceEEEEEecCCCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhC----CCCCcccccEEEEecC
Q psy10441 582 KGIIPEKATLFKSNLMPSRLTFLTTTGTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSE----NLDLKLTPYRVLATNT 657 (867)
Q Consensus 582 ~~i~~~~~~v~~S~~~P~~l~f~~~dG~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~----~ldl~l~~Y~Vip~~~ 657 (867)
.+|. +++.|++|+++|++|+|.|+||+.|.||+|.|||||||+++||++++||.+|+++ ..++.+++|.|+|+++
T Consensus 2 ~~f~-~~v~V~~Sk~~Pkri~~~gsDG~~y~fLlK~~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs~ 80 (307)
T cd05170 2 ESVG-STVTILPTKTKPKKLAFLGSDGKKYTYLFKGREDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLGP 80 (307)
T ss_pred cccc-CeEEEEecCCCceEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcCC
Confidence 4555 4688999999999999999999999999999999999999999999999999986 4799999999999999
Q ss_pred Ccceeeeec-CccHHHHHhhc----C-----------------------------cHHHHHHh-----------------
Q psy10441 658 KHGFVQFVD-SFPVAEVLATE----G-----------------------------SIQNFFRK----------------- 686 (867)
Q Consensus 658 ~~GlIE~V~-s~tl~~I~~~~----~-----------------------------~l~~~l~~----------------- 686 (867)
++||||||+ +.|+.+|++++ + .+...+++
T Consensus 81 ~~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 160 (307)
T cd05170 81 RSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSVL 160 (307)
T ss_pred CcceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHHH
Confidence 999999998 89999997532 0 00111111
Q ss_pred ----------------------hCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEe-cCCCEEEEeec
Q psy10441 687 ----------------------HHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLT-TSGKLFHIDFG 743 (867)
Q Consensus 687 ----------------------~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~-~tG~lfHIDFG 743 (867)
..+++..|+ .++++|++|||+||++||||||||||++||||+ +||+++|||||
T Consensus 161 ~~~~~~i~~~~~~~~l~~~~~~~~~~~~~w~----~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~ 236 (307)
T cd05170 161 RQVLDELMQETPKDLLARELWCSSTTSSEWW----SVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYN 236 (307)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhCCCHHHHH----HHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeH
Confidence 112222222 478999999999999999999999999999999 59999999999
Q ss_pred cccCCCC---CCCCCcccccHHHHHHhCCCCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCCC
Q psy10441 744 YILGRDP---KPLPPPMKLSKEMVEAMGGINSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIA 812 (867)
Q Consensus 744 ~ilg~~~---k~e~vPFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~~ 812 (867)
++||.++ .||.||||||++|+++||+.|.+| .|+..|+.++.+||++++.|++++++++.+++-+|+
T Consensus 237 ~~f~~~~~l~~pE~VPFRLT~~~~~~lg~~g~~G--~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DPl~~W~ 306 (307)
T cd05170 237 VCFEKGKSLRIPEKVPFRMTQNIETALGLTGVEG--VFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWT 306 (307)
T ss_pred hhhcccCCCCCCCCCCeeeCHHHHHHhCCCCCch--hHHHHHHHHHHHHHcCHHHHHHHHHHHhhCcccccc
Confidence 9999874 589999999999999999999987 999999999999999999999999999999999886
No 28
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=100.00 E-value=3.5e-50 Score=415.96 Aligned_cols=191 Identities=45% Similarity=0.812 Sum_probs=179.6
Q ss_pred EEEEeeCCchhhHHHHHHHHHHHHHHHHhCC----CCCcccccEEEEecCCcceeeeec-CccHHHHHhhcCcHHHHHHh
Q psy10441 612 VAIFKHGDDLRQDQLILQIITLMDKLLRSEN----LDLKLTPYRVLATNTKHGFVQFVD-SFPVAEVLATEGSIQNFFRK 686 (867)
Q Consensus 612 ~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~----ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~I~~~~~~l~~~l~~ 686 (867)
.+|+|.|||||||++++|++++||.+|++++ +++.+.||+|+|+|+++|+||||+ +.|+.+| +.+|+.+
T Consensus 1 ~~~~K~~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i------l~~~~~~ 74 (202)
T smart00146 1 AVIFKGGDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI------LYDWFKK 74 (202)
T ss_pred CeeecCCCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH------HHHHHHH
Confidence 3799999999999999999999999999997 999999999999999999999998 8999999 7899999
Q ss_pred hCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEEEEeeccccCCCCC---C-CCCcccccHH
Q psy10441 687 HHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHIDFGYILGRDPK---P-LPPPMKLSKE 762 (867)
Q Consensus 687 ~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lfHIDFG~ilg~~~k---~-e~vPFrLT~~ 762 (867)
.++++..++ +++++|++|||+||++||||||||||++||||+++|+++|||||++||++|+ + |+||||||++
T Consensus 75 ~~~~~~~~~----~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~ 150 (202)
T smart00146 75 KFPDPEDYF----EARKNFTRSCAGYSVITYILGLGDRHNDNIMLDKTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPE 150 (202)
T ss_pred HCcCHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEeCCCCEEEEechhhhCccccCCCCCCCCCeecCHH
Confidence 998866554 5899999999999999999999999999999999999999999999999975 3 8999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCCCCC
Q psy10441 763 MVEAMGGINSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIALE 814 (867)
Q Consensus 763 mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~~~~ 814 (867)
|+++||+.+..+ .|+..|+.++.+||+|++.|++++++|+.+++|+|...
T Consensus 151 ~~~~lg~~~~~g--~F~~~~~~~~~~Lr~~~~~i~~~l~~~~~d~l~~~~~~ 200 (202)
T smart00146 151 MVDVMGDSGYFG--LFRSLCERALRALRKNSNLIMSLLELMLYDGLPDWRSG 200 (202)
T ss_pred HHHHhCCCcccc--hHHHHHHHHHHHHHcCHHHHHHHHHHHcCCCChhhcCC
Confidence 999999777655 99999999999999999999999999999999999853
No 29
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=100.00 E-value=8.8e-50 Score=398.92 Aligned_cols=166 Identities=37% Similarity=0.683 Sum_probs=159.1
Q ss_pred hhHhHHHHhhcCCCCCCCCHHHHHHHHhchhhhhhchhhHHhhhccccCCChHHHHHHHHHhhccCCCCHhhHhhccCCC
Q psy10441 291 TVRDTLNTIISYPPSNQLTTEEQDLIWKFRFYLSNQKKALTKFLECVNWELQAEARQALDLLDQWAPMDVEDSLQLLSPA 370 (867)
Q Consensus 291 ~~~~~L~~i~~~~p~~~L~~~ek~llWk~R~~l~~~p~aL~kfL~sV~W~~~~e~~~a~~lL~~W~~i~~~~ALeLL~~~ 370 (867)
++|++|++|+.+||++.||++||++||+||+||.++|+||||||+||+|+++.++++|+++|.+|++++|+|||||||+.
T Consensus 2 ~~~~~l~~i~~~~pl~~L~~eek~llW~~R~~~~~~p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aLeLL~~~ 81 (171)
T cd00872 2 EEREQLEAIIARDPLSELTEEDKELLWKLRHECRKKPQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQALELLDCN 81 (171)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhCcHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhccCCchhHHHHHHHHHHHhcccccccccccccccCCCcchhhhhhhhhhccccccccccCCcccch
Q psy10441 371 FKHSAVRRYAVTRLQQASDEDLLLYLLQLVQALKYENFEDIMHGYKKLKVPPAIEASVLAEEMSSNVLEYNLDSSHAENM 450 (867)
Q Consensus 371 f~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 450 (867)
|+|+.||+|||++|++++|+||.+||||||||||||+|++ |
T Consensus 82 f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~~~d---------------------------------------s 122 (171)
T cd00872 82 FPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLKYEPYHD---------------------------------------S 122 (171)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcccccC---------------------------------------C
Confidence 9999999999999999999999999999999999999986 9
Q ss_pred hHHHHHHHHHhcCcchhhHHHHHhhhhccCcccchhhhhHHHHHHHHHHHHHH
Q psy10441 451 DLTSFLIHRASKSLTLANYFFWYLTIESEDQDFTIKQDIRVREMYANVKNIFL 503 (867)
Q Consensus 451 ~La~fLi~ra~~n~~i~~~l~W~L~~e~~~~~~~~~~~~~~~~~y~~v~~~~~ 503 (867)
+||+|||+||++|++|||+|||+|++|++++ .++++|..+++.|+
T Consensus 123 ~La~FLl~Ral~n~~igh~lfW~L~~E~~~~--------~~~~R~~~~le~~l 167 (171)
T cd00872 123 DLVRFLLKRALRNQRIGHFFFWHLRSEMHNP--------SVSQRFGLLLEAYL 167 (171)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhcCh--------HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999886 56888877766655
No 30
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=100.00 E-value=7e-50 Score=398.86 Aligned_cols=166 Identities=59% Similarity=0.987 Sum_probs=156.2
Q ss_pred CCCCCCChhhHhHHHHhhcCCCCCCCCHHHHHHHHhchhhhhhchhhHHhhhccccCCChHHHHHHHHHhhccCCCCHhh
Q psy10441 283 DKDAKPNATVRDTLNTIISYPPSNQLTTEEQDLIWKFRFYLSNQKKALTKFLECVNWELQAEARQALDLLDQWAPMDVED 362 (867)
Q Consensus 283 d~~lkp~~~~~~~L~~i~~~~p~~~L~~~ek~llWk~R~~l~~~p~aL~kfL~sV~W~~~~e~~~a~~lL~~W~~i~~~~ 362 (867)
|+++||+++++++|+.|+.+||++.|+++||++||+||+|+.++|+|||+||+||+|+++.++++|+++|.+|++++|++
T Consensus 1 ~~~~~P~~~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~ 80 (166)
T cd00870 1 DKDLKPNSKERKELNKILKYPPTTKLTDEEKDLIWKFRFYLTNNKKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIED 80 (166)
T ss_pred CCCCCcCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHHhhCcHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCHHHHHHHHHHhccCCchhHHHHHHHHHHHhcccccccccccccccCCCcchhhhhhhhhhccccccccc
Q psy10441 363 SLQLLSPAFKHSAVRRYAVTRLQQASDEDLLLYLLQLVQALKYENFEDIMHGYKKLKVPPAIEASVLAEEMSSNVLEYNL 442 (867)
Q Consensus 363 ALeLL~~~f~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (867)
||||||+.|+|+.||+|||++|++++||+|.+||||||||||||++...
T Consensus 81 aLeLL~~~f~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~~~~~------------------------------- 129 (166)
T cd00870 81 ALELLSPYFTNPVVRKYAVSRLKLASDEELLLYLLQLVQALKYENLDLS------------------------------- 129 (166)
T ss_pred HHHHcCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccccc-------------------------------
Confidence 9999999999999999999999999999999999999999999998210
Q ss_pred cCCcccchhHHHHHHHHHhcCcchhhHHHHHhhhhccC
Q psy10441 443 DSSHAENMDLTSFLIHRASKSLTLANYFFWYLTIESED 480 (867)
Q Consensus 443 ~~~~~~~s~La~fLi~ra~~n~~i~~~l~W~L~~e~~~ 480 (867)
....++|+||+|||+||++|++|||+|||+|++|+||
T Consensus 130 -~~~~~~s~La~fLl~Ral~s~~ig~~lfW~Lk~E~~d 166 (166)
T cd00870 130 -PLPRLDSPLADFLIERALKNPKLANFLYWYLKVELED 166 (166)
T ss_pred -cccccccHHHHHHHHHHhcCHHHHHHHHHHhhhhccC
Confidence 0012249999999999999999999999999999975
No 31
>KOG0890|consensus
Probab=100.00 E-value=6.7e-47 Score=469.22 Aligned_cols=408 Identities=21% Similarity=0.355 Sum_probs=301.5
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHHhcccccccccccccccCCCcchhhhhhhhhhccccccccccCCcccchhHHHHH
Q psy10441 377 RRYAVTRLQQASDEDLLLYLLQLVQALKYENFEDIMHGYKKLKVPPAIEASVLAEEMSSNVLEYNLDSSHAENMDLTSFL 456 (867)
Q Consensus 377 R~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~La~fL 456 (867)
-+.--+++..++......-+.||+--+.+-.. ..++-|
T Consensus 1876 n~~i~~~~~~lp~Y~f~ta~sQLlSRicH~~~------------------------------------------dV~~vl 1913 (2382)
T KOG0890|consen 1876 NSLIEEALEHLPTYQFYTAYSQLLSRICHPNQ------------------------------------------DVARVL 1913 (2382)
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHcCCch------------------------------------------HHHHHH
Confidence 33444577788888888889999988876332 222222
Q ss_pred HHHHhcCcch--hhHHHHHhhhhccCcccchhhhhHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHh
Q psy10441 457 IHRASKSLTL--ANYFFWYLTIESEDQDFTIKQDIRVREMYANVKNIFLQTLQHGPSESHKINSYLIKQQSFIEKLVNLV 534 (867)
Q Consensus 457 i~ra~~n~~i--~~~l~W~L~~e~~~~~~~~~~~~~~~~~y~~v~~~~~~~l~~~~~~~~~~~~~l~~Q~~~~~~L~~i~ 534 (867)
.+-+.+... =++-.|++.+-..... |.-.+++..|+..- .... ....+.+..+..+.++|.++.
T Consensus 1914 -~~II~~l~~~YPqq~lW~~~a~~kS~~------p~R~~R~keIL~k~---~~~~----~~~~~l~~da~~lTe~L~~lc 1979 (2382)
T KOG0890|consen 1914 -KHIIAKLVLAYPQQTLWQSAALSKSNV------PSRVERCKEILTKS---RRQK----PDYKKLLSDAYDLTEKLTNLC 1979 (2382)
T ss_pred -HHHHHHHHHhCchHHHHHHHHHHhccc------HHHHHHHHHHHHHH---HhcC----ccHHHHHHHHHHHHHHHHHHh
Confidence 222222222 3678999988765432 24456666665511 1111 123455667778888888876
Q ss_pred HHHhhccCchhhh--HHHHHHHhhcccccc--ccccCCCCccc-----------CCCCc----EEEEEEeeCceeeecCC
Q psy10441 535 KIVARESGNRKRK--IDRLQALLADSETFK--FNFTNFEPLPL-----------PLDPN----VYIKGIIPEKATLFKSN 595 (867)
Q Consensus 535 ~~v~~~~~~~~~k--~e~L~~~l~~~~~~~--~~~~~~~~~~l-----------Pl~p~----~~i~~i~~~~~~v~~S~ 595 (867)
+.-... ..+.. .+.++++........ ..+...-...+ |.+|. ..|.||. |+++|+.|.
T Consensus 1980 n~~v~~--ss~~~sl~t~F~kl~~~~~~s~iliP~~~~M~ptlP~~~~~~~~h~~~~~f~~~~~~IsgF~-d~V~Il~SL 2056 (2382)
T KOG0890|consen 1980 NKKVNS--SSKVLSLKTDFRKLVMNRRFSDILIPLQSIMDPTLPLIDNNHATHSPFPPFQSHLPYISGFS-DEVKILNSL 2056 (2382)
T ss_pred cCCCCc--ccccccHHHHHHHhccccChhhhhhhHhhhcccccccccCcccccCCCCCCCCcchhhhcch-HHHHHHHhc
Confidence 521111 11110 223443333211000 00000000111 12121 1478888 789999999
Q ss_pred CcceEEEEEecCCCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhC----CCCCcccccEEEEecCCcceeeeec-CccH
Q psy10441 596 LMPSRLTFLTTTGTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSE----NLDLKLTPYRVLATNTKHGFVQFVD-SFPV 670 (867)
Q Consensus 596 ~~P~~l~f~~~dG~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~----~ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl 670 (867)
++|++|.++|+||+.|.+|+|..||||+|.+.|++-.+||++|+|+ .+.|.++||.|||+++.||+||||| ..++
T Consensus 2057 qKPKkI~l~GsDGk~Y~~lCKpKDDLRKD~RlMeFn~lin~lL~KD~eSRrR~L~IRTYaViPLneeCGiIEWv~nt~sl 2136 (2382)
T KOG0890|consen 2057 QKPKKIKLRGSDGKIYPFLCKPKDDLRKDARLMEFNELINKLLRKDQESRRRKLYIRTYAVIPLNEECGIIEWVPNTASL 2136 (2382)
T ss_pred cCCeEEEEEcCCCCEeEEEeCchhhhhhhhHHHHHHHHHHHHHhhCHHHhhhcceeeEEEEeecCCccceEEecCCcchH
Confidence 9999999999999999999999999999999999999999999996 3789999999999999999999999 8899
Q ss_pred HHHHhhc----------------------------------------CcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhh
Q psy10441 671 AEVLATE----------------------------------------GSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCA 710 (867)
Q Consensus 671 ~~I~~~~----------------------------------------~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A 710 (867)
++|+.+. ..+++||...+|++..||. +|.+|++|.|
T Consensus 2137 R~IL~klY~~rg~~~~~~~l~~~~~~~~~~~~~~~~~F~~~~lpkfPPVFheWFl~~FPeP~sW~~----SR~~Y~rTtA 2212 (2382)
T KOG0890|consen 2137 REILDKLYMTRGKWMIKKQLRSVHLKKQMAKEEKGKVFREKLLPKFPPVFHEWFLESFPEPGSWFA----SRNNYARTTA 2212 (2382)
T ss_pred HHHHHHHHHhccccchhhHHHHhcCcHhhcccchhhhhHHhhcccCCcHHHHHHHHhCCCchHHHH----HHHHHHHHHH
Confidence 9987542 3468999999999998884 8999999999
Q ss_pred hHHHHHhhhccCCCCCcceeEe-cCCCEEEEeeccccCCC---CCCCCCcccccHHHHHHhCCCCchhHHHHHHHHHHHH
Q psy10441 711 GYCVITYILGVGDRHFDNLLLT-TSGKLFHIDFGYILGRD---PKPLPPPMKLSKEMVEAMGGINSEHYHEFRKQCYTAF 786 (867)
Q Consensus 711 ~ysv~tYiLGIGDRH~dNIli~-~tG~lfHIDFG~ilg~~---~k~e~vPFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~ 786 (867)
++||+|||||+||||.+|||++ .||..+|+||.++|++| ++||.||||||+|||++||+.|.|| .|+..|+.++
T Consensus 2213 VMSmVGyIlGLGDRHgENILFDs~TGdcVHVDFnCLFnKGetlevPEiVPFRLT~NMidamGp~G~EG--~Frk~cEiTL 2290 (2382)
T KOG0890|consen 2213 VMSMVGYILGLGDRHGENILFDSTTGDCVHVDFNCLFNKGETLEVPELVPFRLTQNMIDAMGPLGLEG--SFRKVCEITL 2290 (2382)
T ss_pred HHHHHHHHhcCccccccceeeecCCCcEEEEeecccccCCcccCCCCccceecchhHHhhcCCcccch--hHHHHHHHHH
Confidence 9999999999999999999999 59999999999999998 6899999999999999999999999 9999999999
Q ss_pred HHHhcChhHHHHHHHHHhcCCCCCCCCCc-----------hHHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHhh
Q psy10441 787 LHLRRHSNLILNLFTLMVDASVPDIALEP-----------DKAVKKVQDKFRLDLG----DEEAVHYLQNLIDLSVTA 849 (867)
Q Consensus 787 ~~LR~~~~lil~l~~lml~~~ip~~~~~~-----------~~~i~~l~~~l~l~ls----eeeA~~~~~~lI~~s~~s 849 (867)
+.+|+|.+.+++++.-++++++-+|+... ...|..+++|++--+. .-.-..+.+.||++|++-
T Consensus 2291 rLlR~n~e~LMSiL~tF~~DPlvew~~~~k~~s~~~i~e~~~~i~~i~~rlqG~~~~~glPLSveGq~~~LI~eATse 2368 (2382)
T KOG0890|consen 2291 RLLRKNRETLMSILETFVYDPLVEWNRPSKGRSPKKINEDRLVIGRIRGRLQGAMKVDGLPLSVEGQASSLIEEATSE 2368 (2382)
T ss_pred HHHHhcchhHHHHHHHHHhCchhhccCcccCCCcCcccchHHHHhHHHHHHhccCcCCCCccchhhHHHHHHHHhcCH
Confidence 99999999999999999999888887321 1456677888875221 112234667799999875
No 32
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=100.00 E-value=1.4e-46 Score=400.71 Aligned_cols=225 Identities=16% Similarity=0.259 Sum_probs=205.8
Q ss_pred EEEeeCceeeecCCCcceEEEEEecCCCeEEEEEe--eCCchhhHHHHHHHHHHHHHHHHhC----CCCCcccccEEEEe
Q psy10441 582 KGIIPEKATLFKSNLMPSRLTFLTTTGTEYVAIFK--HGDDLRQDQLILQIITLMDKLLRSE----NLDLKLTPYRVLAT 655 (867)
Q Consensus 582 ~~i~~~~~~v~~S~~~P~~l~f~~~dG~~~~~i~K--~GDDLRqD~l~lQli~lmd~ll~~~----~ldl~l~~Y~Vip~ 655 (867)
.+|.|+...|..|+++|++|++.|+||+.|.|++| .++|+|+|++++|++++||.+|+++ .+++.+++|.|+|+
T Consensus 2 ~rf~p~~~iv~~~~~~pkri~i~gsdG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viPL 81 (253)
T cd05163 2 ERFLPTVEIVRGHGYCYRRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVPL 81 (253)
T ss_pred cccCCeEEEEccCCCcCcEEEEECCCCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEEc
Confidence 45677666788999999999999999999999999 4689999999999999999999865 46899999999999
Q ss_pred cCCcceeeeec-CccHHHHHhhc--------------CcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhc
Q psy10441 656 NTKHGFVQFVD-SFPVAEVLATE--------------GSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILG 720 (867)
Q Consensus 656 ~~~~GlIE~V~-s~tl~~I~~~~--------------~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLG 720 (867)
++++|||||++ ..|+.+|+... ..+.+||.+..+++..||. ++.+|++|+|++|+++||||
T Consensus 82 s~~~gLie~~~~~~tl~~i~~~~~~~~~~i~~~~~p~~~l~~~~~~~~~~~~~~~~----~r~~ft~s~A~~s~~gYilg 157 (253)
T cd05163 82 SPQIRLVEDDPSYISLQEIYEDKLEIYNEIQKDMVPDTILKNYILSTFPTYQDYWL----FRKQFTYQLALLSFMTYILS 157 (253)
T ss_pred CCccceEEECCCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHCCCHHHHHH----HHHHHHHHHHHHHHHHHHhc
Confidence 99999999998 88999987421 2578899988888777664 79999999999999999999
Q ss_pred cCCCCCcceeEec-CCCEEEEeeccccCCC----CCCCCCcccccHHHHHHhCCCCchhHHHHHHHHHHHHHHHhcChhH
Q psy10441 721 VGDRHFDNLLLTT-SGKLFHIDFGYILGRD----PKPLPPPMKLSKEMVEAMGGINSEHYHEFRKQCYTAFLHLRRHSNL 795 (867)
Q Consensus 721 IGDRH~dNIli~~-tG~lfHIDFG~ilg~~----~k~e~vPFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~l 795 (867)
+||||++||||+. ||+++|||||+.|+++ +.||+||||||++|+++||+.|.+| .|+..|+.++.+||++...
T Consensus 158 lgdRh~~nili~~~tG~v~hiDf~~~f~~~~~~~~~pE~VPFRLT~ni~~~~g~~g~eG--~f~~~~~~~~~~Lr~~~~~ 235 (253)
T cd05163 158 INNRNPDKIFISRDTGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIGPIGLEG--ILTSSMMAIARCLTEPEFD 235 (253)
T ss_pred CCCCCchhEEEEcCCCcEEEEeeeeeecCCCcCCCCCCcCCcccCHHHHHHhCCcCcCC--cHHHHHHHHHHHHhcCHHH
Confidence 9999999999995 9999999999999876 4789999999999999999999998 8999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCC
Q psy10441 796 ILNLFTLMVDASVPDIA 812 (867)
Q Consensus 796 il~l~~lml~~~ip~~~ 812 (867)
|+++++.++.+++-+|.
T Consensus 236 l~~~L~~fi~Dpl~~W~ 252 (253)
T cd05163 236 LENALQLFIRDELIAWH 252 (253)
T ss_pred HHHHHHHHHcChhhhhc
Confidence 99999999999998874
No 33
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=100.00 E-value=1.3e-46 Score=382.65 Aligned_cols=176 Identities=48% Similarity=0.791 Sum_probs=157.7
Q ss_pred CCCCCChhhHhHHHHhhcCCCCCCCCHHHHHHHHhchhhhhhchhhHHhhhccccCCChHHHHHHHHHhhccCCCCHhhH
Q psy10441 284 KDAKPNATVRDTLNTIISYPPSNQLTTEEQDLIWKFRFYLSNQKKALTKFLECVNWELQAEARQALDLLDQWAPMDVEDS 363 (867)
Q Consensus 284 ~~lkp~~~~~~~L~~i~~~~p~~~L~~~ek~llWk~R~~l~~~p~aL~kfL~sV~W~~~~e~~~a~~lL~~W~~i~~~~A 363 (867)
+|+||+.+++++|++|+++||+..|+++||+++|+||+++.++|+|||+||+||+|+++.++++++++|..|++++|++|
T Consensus 1 ~~~~p~~~~~~~L~~i~~~~p~~~L~~~ek~~lW~~R~~l~~~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~A 80 (184)
T PF00613_consen 1 KDLKPNEEERDQLEAIINKDPLQELTEEEKELLWKYRYYLMNNPEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDA 80 (184)
T ss_dssp -TS---HHHHHHHHHHHTS-TTSSS-HHHHHHHHHTHHHHTTSGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcCCCccCCHHHHHHHHHCCHHhhhCchHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCHHHHHHHHHHhccCCchhHHHHHHHHHHHhcccccccccccccccCCCcchhhhhhhhhhcccccccccc
Q psy10441 364 LQLLSPAFKHSAVRRYAVTRLQQASDEDLLLYLLQLVQALKYENFEDIMHGYKKLKVPPAIEASVLAEEMSSNVLEYNLD 443 (867)
Q Consensus 364 LeLL~~~f~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (867)
|+||+++|+|+.||+|||++|++++||+|.+||||||||||||++++
T Consensus 81 L~LL~~~f~~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaLr~e~~~~--------------------------------- 127 (184)
T PF00613_consen 81 LELLSPNFPDPFVRQYAVRRLESLSDEELLFYLPQLVQALRYEPYHD--------------------------------- 127 (184)
T ss_dssp HHCTSTT---HHHHHHHHHHHCTS-HHHHHHHHHHHHHHGGGSSSSS---------------------------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHheeccccc---------------------------------
Confidence 99999999999999999999999999999999999999999999876
Q ss_pred CCcccchhHHHHHHHHHhcCcchhhHHHHHhhhhccCcccchhhhhHHHHHHHHHHHHHHHHh
Q psy10441 444 SSHAENMDLTSFLIHRASKSLTLANYFFWYLTIESEDQDFTIKQDIRVREMYANVKNIFLQTL 506 (867)
Q Consensus 444 ~~~~~~s~La~fLi~ra~~n~~i~~~l~W~L~~e~~~~~~~~~~~~~~~~~y~~v~~~~~~~l 506 (867)
|+|++|||+||++|++|||+|||+|++|++++ .++++|..+++.++..+
T Consensus 128 ------s~L~~fLl~ra~~s~~ia~~l~W~L~~e~~~~--------~~~~r~~~~~~~~l~~~ 176 (184)
T PF00613_consen 128 ------SPLARFLLRRALKSPRIAHQLFWYLKAELHDP--------EYSERYQLLLEAFLDGC 176 (184)
T ss_dssp -------HHHHHHHHHHHHSHHHHHHHHHHHHHHHTSH--------HHHHHHHHHHHHHHHHS
T ss_pred ------cHHHHHHHHHHHhCHHHHHHHHHHHHHhccCc--------cHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999764 56778888888777654
No 34
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=100.00 E-value=1.8e-46 Score=372.83 Aligned_cols=163 Identities=34% Similarity=0.574 Sum_probs=152.2
Q ss_pred hhHhHHHHhhcCCCCCCCCHHHHHHHHhchhhhhhchhhHHhhhccc-cCCChHHHHHHHHHhhccCCCCHhhHhhccCC
Q psy10441 291 TVRDTLNTIISYPPSNQLTTEEQDLIWKFRFYLSNQKKALTKFLECV-NWELQAEARQALDLLDQWAPMDVEDSLQLLSP 369 (867)
Q Consensus 291 ~~~~~L~~i~~~~p~~~L~~~ek~llWk~R~~l~~~p~aL~kfL~sV-~W~~~~e~~~a~~lL~~W~~i~~~~ALeLL~~ 369 (867)
+++++|++|+.+||+..||++||++||++|+||.++|+|||+||+|| +|++ .++.+++++|+.|+|++|++|||||++
T Consensus 2 ~~~~~L~~i~~~~p~~~l~~~ek~llW~~R~~~~~~p~aLp~~L~s~~~w~~-~~~~e~~~LL~~W~p~~p~~ALeLL~~ 80 (169)
T cd00869 2 ETQEKLLDLIQKQSTYTLSTEDKDLLWEKRLYCTNEPNALPLVLASAPSWDW-ANLMDVYQLLHQWAPLRPLIALELLLP 80 (169)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhCcHHHHHHHHhcccCcH-HHHHHHHHHHhCCCCCCHHHHHHHcCC
Confidence 46789999999999999999999999999999999999999999986 6875 689999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhccCCchhHHHHHHHHHHHhcccccccccccccccCCCcchhhhhhhhhhccccccccccCCcccc
Q psy10441 370 AFKHSAVRRYAVTRLQQASDEDLLLYLLQLVQALKYENFEDIMHGYKKLKVPPAIEASVLAEEMSSNVLEYNLDSSHAEN 449 (867)
Q Consensus 370 ~f~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (867)
.|+|+.||+|||++|++++||+|.+||||||||||||++++
T Consensus 81 ~f~d~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLkyE~~~~--------------------------------------- 121 (169)
T cd00869 81 KFPDQEVRAHAVQWLARLSNDELLDYLPQLVQALKFELYLK--------------------------------------- 121 (169)
T ss_pred cCCChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccccCc---------------------------------------
Confidence 99999999999999999999999999999999999999986
Q ss_pred hhHHHHHHHHHhcCcchhhHHHHHhhhhccCcccchhhhhHHHHHHHHHHHH
Q psy10441 450 MDLTSFLIHRASKSLTLANYFFWYLTIESEDQDFTIKQDIRVREMYANVKNI 501 (867)
Q Consensus 450 s~La~fLi~ra~~n~~i~~~l~W~L~~e~~~~~~~~~~~~~~~~~y~~v~~~ 501 (867)
|+|++|||+||+.|++|||+|||+|++|++++ .++++|..+...
T Consensus 122 s~L~~FLl~RAl~n~~i~h~lfW~Lk~e~~~~--------~~~~~~~~l~~a 165 (169)
T cd00869 122 SALVRFLLSRSLVSLRFAHELYWLLKDALDDC--------YFSSAYQDLGAA 165 (169)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHhHHHccCc--------hHHHHHHHHHHH
Confidence 99999999999999999999999999999886 456677655443
No 35
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=100.00 E-value=7.8e-46 Score=375.90 Aligned_cols=171 Identities=51% Similarity=0.841 Sum_probs=161.5
Q ss_pred ChhhHhHHHHhhcCCCCCCCCHHHHHHHHhchhhh-hhchhhHHhhhccccCCChHHHHHHHHHhhccCCCCHhhHhhcc
Q psy10441 289 NATVRDTLNTIISYPPSNQLTTEEQDLIWKFRFYL-SNQKKALTKFLECVNWELQAEARQALDLLDQWAPMDVEDSLQLL 367 (867)
Q Consensus 289 ~~~~~~~L~~i~~~~p~~~L~~~ek~llWk~R~~l-~~~p~aL~kfL~sV~W~~~~e~~~a~~lL~~W~~i~~~~ALeLL 367 (867)
+.+++++|+.|+++||+..|+++||++||+||+|+ +++|+|||+||+||+|+++.|+++++++|..|++++|++|||||
T Consensus 4 ~~~~~~~l~~i~~~~p~~~l~~eek~llW~~R~~~l~~~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL~LL 83 (184)
T smart00145 4 NIEERDRLEAILKLDPTYELTAEEKDLIWKFRHYYLTNNPKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDALELL 83 (184)
T ss_pred CHHHHHHHHHHHhCCCcccCCHHHHHHHHHChHHHHhcChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 56789999999999999999999999999999775 68999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhccCCchhHHHHHHHHHHHhcccccccccccccccCCCcchhhhhhhhhhccccccccccCCcc
Q psy10441 368 SPAFKHSAVRRYAVTRLQQASDEDLLLYLLQLVQALKYENFEDIMHGYKKLKVPPAIEASVLAEEMSSNVLEYNLDSSHA 447 (867)
Q Consensus 368 ~~~f~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (867)
++.|+|+.||+|||++|++++||+|.+||||||||||||++++
T Consensus 84 ~~~~~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr~E~~~~------------------------------------- 126 (184)
T smart00145 84 SPKFPDPFVRAYAVERLESASDEELLLYLLQLVQALKYEPYLD------------------------------------- 126 (184)
T ss_pred CccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcccccc-------------------------------------
Confidence 9999999999999999999999999999999999999999875
Q ss_pred cchhHHHHHHHHHhcCcchhhHHHHHhhhhccCcccchhhhhHHHHHHHHHHHHHHHHh
Q psy10441 448 ENMDLTSFLIHRASKSLTLANYFFWYLTIESEDQDFTIKQDIRVREMYANVKNIFLQTL 506 (867)
Q Consensus 448 ~~s~La~fLi~ra~~n~~i~~~l~W~L~~e~~~~~~~~~~~~~~~~~y~~v~~~~~~~l 506 (867)
|+|++|||+||++|+.|||+|||+|++|++++ .++++|..+++.|+..+
T Consensus 127 --~~L~~fLl~ra~~s~~~~~~l~W~L~~e~~~~--------~~~~r~~~~le~~l~~~ 175 (184)
T smart00145 127 --SALARFLLERALKNQRLGHFFYWYLKSELEDP--------HYSIRFGLLLEAYLRGC 175 (184)
T ss_pred --cHHHHHHHHHHhhCHHHHHHHHHHHHHHccCc--------hhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999875 46788888888777654
No 36
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=100.00 E-value=3.6e-45 Score=386.39 Aligned_cols=199 Identities=36% Similarity=0.685 Sum_probs=162.3
Q ss_pred eEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcceeeeec-CccHHHHHhhc-----------
Q psy10441 610 EYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVD-SFPVAEVLATE----------- 677 (867)
Q Consensus 610 ~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~I~~~~----------- 677 (867)
.|++|||.|||||||++++|++++||.+|++++...++++|.|+|+++++|+||||+ +.|+.+|+.++
T Consensus 1 ~y~~l~K~~dDlr~D~~~~ql~~~~n~~l~~~~~~~~~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~~~~~ 80 (235)
T PF00454_consen 1 EYSFLVKGGDDLRQDERVMQLFRLMNRILKKEGETREIRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHSNDNP 80 (235)
T ss_dssp -EEEEEEESS-CHHHHHHHHHHHHHHHHHHHTT---------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTTCSC-
T ss_pred CceEEEECCchhhchhHHHHHHHHHHHHHhcCCCCceEEEeEEEecCCCCceeEEeccccchhHhhcccccccccccccc
Confidence 489999999999999999999999999999999999999999999999999999998 88999999876
Q ss_pred ------------------CcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEe-cCCCEE
Q psy10441 678 ------------------GSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLT-TSGKLF 738 (867)
Q Consensus 678 ------------------~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~-~tG~lf 738 (867)
..+.+||.+..++...++ +++++|++|+|+||+++||||+||||++||||+ ++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~----~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~~g~~~ 156 (235)
T PF00454_consen 81 SRKYKAKLFEKQSSKVPKDGLRQYFLKSFPSAEEWF----EARKNFTRSLAAYSILDYILGLGDRHPGNILIDKKTGELI 156 (235)
T ss_dssp -----------------TTHHHHHHHHHSCTTHHHH----HHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ETTSEEE
T ss_pred ccccccccccccccccccchHHHHHHhcCCChhhhH----hhhHhhHHHHHHHhhceEEEeecCCCchhheeccccceee
Confidence 236788888887765444 479999999999999999999999999999995 799999
Q ss_pred EEeeccccC--CCCCCCCCcccccHHHHHHhCC--CCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCCC
Q psy10441 739 HIDFGYILG--RDPKPLPPPMKLSKEMVEAMGG--INSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIA 812 (867)
Q Consensus 739 HIDFG~ilg--~~~k~e~vPFrLT~~mv~~mGg--~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~~ 812 (867)
|||||++|+ ..+++|+||||||++|+++||+ .....++.|+..|+.++.+||+|.+.|++++++|+++++++|+
T Consensus 157 hIDfg~~f~~~~~~~~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ll~~~~~d~l~~w~ 234 (235)
T PF00454_consen 157 HIDFGFIFGGKHLPVPETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCEAILRALRRNKDLLLSLLELFLRDPLIDWR 234 (235)
T ss_dssp E--HSSCTTHHHGSSSS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTSCSTTSS
T ss_pred eEEeHHhhhccccCCCCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHHHHHHHHhcChHHHHHHHHHHHhCCCCCCC
Confidence 999999999 6678999999999999999955 3444456999999999999999999999999999999999986
No 37
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=100.00 E-value=1.3e-43 Score=399.06 Aligned_cols=226 Identities=23% Similarity=0.391 Sum_probs=192.2
Q ss_pred cCCCCcccCCCCcEEEEEEeeCceeeecCC-CcceEEEEEec--------------------------------------
Q psy10441 566 TNFEPLPLPLDPNVYIKGIIPEKATLFKSN-LMPSRLTFLTT-------------------------------------- 606 (867)
Q Consensus 566 ~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~-~~P~~l~f~~~-------------------------------------- 606 (867)
....|+..|++|.+.++.|+...++|+.|+ .+|-|+.|.+-
T Consensus 933 ~~~~pil~pf~~~ivl~~i~l~gikv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1374)
T PTZ00303 933 DLPHPILNPFKPYIVLKSIRLSGVKVAPNAASKPTWLAFSTWSAAEHLERDTMTAANNFGAHTLPTGESHAERSGEGREK 1012 (1374)
T ss_pred CCCcccccCCCcceeEEeeeccCeEeccccccCcchhhccchhhhhhhhhhcccccccccccccccccchhhhccccccc
Confidence 345789999999999999999999999998 78888887532
Q ss_pred ------------------------CCC-----------eEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccE
Q psy10441 607 ------------------------TGT-----------EYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYR 651 (867)
Q Consensus 607 ------------------------dG~-----------~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~ 651 (867)
+|. .|.+|||+| ||||||+++|||++||+||+++++||+|+||+
T Consensus 1013 ~~~~~~~~~~~~~~~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~g-DLRQDQLVLQmIrLMDrLLKkEnLDLKLTPYR 1091 (1374)
T PTZ00303 1013 GTGAAKTYTSTKTSAPVTSPVTAVNGVSPESLHDSLPQECMFLYKRE-NVERDQLMCISSRLLQMLLSSEIGNAEMLDYS 1091 (1374)
T ss_pred ccCCCccccccccccceeeeeeccCCcCccccccccchheeEEEecC-cHHHHHHHHHHHHHHHHHHHhcCCCccccceE
Confidence 332 389999996 99999999999999999999999999999999
Q ss_pred EEEecCCcceeeeecCccHHHHHhhcCcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeE
Q psy10441 652 VLATNTKHGFVQFVDSFPVAEVLATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLL 731 (867)
Q Consensus 652 Vip~~~~~GlIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli 731 (867)
|+|||.+.||||+|++.++++|.+. .|.+||+..+ ...++||++|||||||+||||||||||||||||
T Consensus 1092 VLATG~dsGLIEfVps~tLAsI~~~--~Il~YLr~~~----------t~~~~NFi~S~AGYsViTYILgIgDRHngNILI 1159 (1374)
T PTZ00303 1092 VLPLSCDSGLIEKAEGRELSNLDNM--DIASYVLYRG----------TRSCINFLASAKLFLLLNYIFSIGDRHKGNVLI 1159 (1374)
T ss_pred EEeccCCcccEEEecchHHHHhhhh--HHHHHHHhcC----------cHHHHHHHHHHHHHHHHHHHhccCcccCCceeE
Confidence 9999999999999999999999764 5999998422 125789999999999999999999999999999
Q ss_pred ecCCCEEEEeeccccCCCC---CCCCCcccccHHHHHHhCCCC-------------------------------------
Q psy10441 732 TTSGKLFHIDFGYILGRDP---KPLPPPMKLSKEMVEAMGGIN------------------------------------- 771 (867)
Q Consensus 732 ~~tG~lfHIDFG~ilg~~~---k~e~vPFrLT~~mv~~mGg~~------------------------------------- 771 (867)
+++||+||||||||||+.+ |.-++|+|+...|++++|+..
T Consensus 1160 d~dGhLfHIDFGFILg~rtfkeKl~~s~vR~D~~l~eav~~~q~~~~~~~~~~~~~~~~~~~~g~~s~~~~s~~~~~~~p 1239 (1374)
T PTZ00303 1160 GTNGALLHIDFRFIFSEKTFVEKLARSTVRIDDAFLAAVEQCQQRQCSCFAGPSPAATSSRARGCASPPGSSGSGGCGSP 1239 (1374)
T ss_pred cCCCCEEEEecceeecCchhhhccCCCceehhHHHHHHHHHHHhhhcccccCCCCccccccccCCCCCCCCCCCCCcCCC
Confidence 9999999999999999886 667999999999987643211
Q ss_pred -----------chhHHHHHHHHHHHHHHHhcChhHHHHHHHHHh
Q psy10441 772 -----------SEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMV 804 (867)
Q Consensus 772 -----------~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml 804 (867)
.+--..|......-|.-+|.++..+..|+.-.+
T Consensus 1240 a~p~~~~e~ss~~~~~~f~~~aa~wf~~vrp~a~i~~~l~~~~v 1283 (1374)
T PTZ00303 1240 ASPTKAPEPSSAEIREAFFSSAAEWFVHVRPFAAVFYELWLYAV 1283 (1374)
T ss_pred CCcccCCCCcchHHHHHHHHHHhhHheeechHHHHHHHHHHHHH
Confidence 122346777777778888888877777665544
No 38
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=100.00 E-value=3.5e-42 Score=339.84 Aligned_cols=151 Identities=50% Similarity=0.817 Sum_probs=146.9
Q ss_pred hhHhHHHHhhcCCCCCCCCHHHHHHHHhchhhhhhchhhHHhhhccccCCChHHHHHHHHHhhccCCCCHhhHhhccCCC
Q psy10441 291 TVRDTLNTIISYPPSNQLTTEEQDLIWKFRFYLSNQKKALTKFLECVNWELQAEARQALDLLDQWAPMDVEDSLQLLSPA 370 (867)
Q Consensus 291 ~~~~~L~~i~~~~p~~~L~~~ek~llWk~R~~l~~~p~aL~kfL~sV~W~~~~e~~~a~~lL~~W~~i~~~~ALeLL~~~ 370 (867)
.++++++.|+.++|+..|+++||+++|++|+++.++|.+||+||+||+|+++.++.+++++|..|++++|++|||||++.
T Consensus 2 ~~~~~l~~i~~~~p~~~l~~~ek~llw~~R~~~~~~p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL~LL~~~ 81 (152)
T cd00864 2 WERKPLLAILLYPPFSTLTEEEKELLWKFRYYLLNVPKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDALELLSPK 81 (152)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhChHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCCc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhccCCchhHHHHHHHHHHHhcccccccccccccccCCCcchhhhhhhhhhccccccccccCCcccch
Q psy10441 371 FKHSAVRRYAVTRLQQASDEDLLLYLLQLVQALKYENFEDIMHGYKKLKVPPAIEASVLAEEMSSNVLEYNLDSSHAENM 450 (867)
Q Consensus 371 f~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 450 (867)
|+|+.||+|||++|++++||+|.+||||||||||||++++ +
T Consensus 82 ~~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLkye~~~~---------------------------------------~ 122 (152)
T cd00864 82 YPDPVVRQYAVRVLESASDDELLLYLPQLVQALKYEPYLD---------------------------------------S 122 (152)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccccCC---------------------------------------C
Confidence 9999999999999999999999999999999999999875 9
Q ss_pred hHHHHHHHHHhcCcchhhHHHHHhhhhccC
Q psy10441 451 DLTSFLIHRASKSLTLANYFFWYLTIESED 480 (867)
Q Consensus 451 ~La~fLi~ra~~n~~i~~~l~W~L~~e~~~ 480 (867)
+|++|||+||++|+.+||+|||+|++|+++
T Consensus 123 ~L~~fLl~ra~~s~~~~~~l~W~L~~e~~~ 152 (152)
T cd00864 123 YLARFLLERALKSQRLGHQLYWNLKSEIHD 152 (152)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999864
No 39
>KOG0892|consensus
Probab=100.00 E-value=1.5e-40 Score=414.63 Aligned_cols=238 Identities=27% Similarity=0.507 Sum_probs=217.7
Q ss_pred EEEEEEeeCceeeecCCCcceEEEEEecCCCeEEEEEe-eCCchhhHHHHHHHHHHHHHHHHhC----CCCCcccccEEE
Q psy10441 579 VYIKGIIPEKATLFKSNLMPSRLTFLTTTGTEYVAIFK-HGDDLRQDQLILQIITLMDKLLRSE----NLDLKLTPYRVL 653 (867)
Q Consensus 579 ~~i~~i~~~~~~v~~S~~~P~~l~f~~~dG~~~~~i~K-~GDDLRqD~l~lQli~lmd~ll~~~----~ldl~l~~Y~Vi 653 (867)
..|.++. +.+.+...-..|+.|++.++||++|.-++| ++||||||..|.|++...|.+|+.+ +++|.++||+||
T Consensus 2441 p~i~s~~-~~v~~~~GinaPkiI~c~gSDG~~~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~~et~krkL~irTYKVv 2519 (2806)
T KOG0892|consen 2441 PTVVSFD-DTVTFAGGINAPKVITCVGSDGKTYKQLVKGGNDDLRQDAVMEQVFGQVNTFLQNDRETRKRKLSIRTYKVI 2519 (2806)
T ss_pred ceEEecc-cceeeecCccCCeEEEEEccCchhHHHHHhcccchHHHHHHHHHHHHHHHHHhhccHHHHhcccceeEEeee
Confidence 6677887 567788766899999999999999999999 5599999999999999999999877 589999999999
Q ss_pred EecCCcceeeeec-CccHHHHHh-----hc----------------------------------------CcHHHHHHhh
Q psy10441 654 ATNTKHGFVQFVD-SFPVAEVLA-----TE----------------------------------------GSIQNFFRKH 687 (867)
Q Consensus 654 p~~~~~GlIE~V~-s~tl~~I~~-----~~----------------------------------------~~l~~~l~~~ 687 (867)
|++++.|+||||. ++++++++. .+ ..++.||.+.
T Consensus 2520 Pls~~sGvlEwv~~tiplgeyLv~~~~gah~ry~p~d~s~~~crk~m~~~q~k~~E~r~k~y~~vc~n~~PvfryFflEk 2599 (2806)
T KOG0892|consen 2520 PLSPKAGVLEWVTNTIPLGEYLVVESGGAHKRYRPNDWSLSKCRKLMSEVQKKSLETRLKAYDKVCRNIRPVFRYFFLEK 2599 (2806)
T ss_pred ecCcccceeecccCCeehhhhhcccCCccccccCCCCCChHHHHHHHHHHhcccHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 9999999999997 999999986 21 1345677888
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEec-CCCEEEEeeccccCCC---CCCCCCcccccHHH
Q psy10441 688 HPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTT-SGKLFHIDFGYILGRD---PKPLPPPMKLSKEM 763 (867)
Q Consensus 688 ~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~-tG~lfHIDFG~ilg~~---~k~e~vPFrLT~~m 763 (867)
+|+|..|| ++|-+||+|.|+.||+|||||+||||..|||||. ||+++|||+|..|..| |.||.||||||+++
T Consensus 2600 F~dP~~WF----ekrlaYTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHIDlGiAFEQGkilptPE~VPFRLTRDi 2675 (2806)
T KOG0892|consen 2600 FPDPADWF----EKRLAYTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDLGIAFEQGKILPTPETVPFRLTRDI 2675 (2806)
T ss_pred cCCHHHHH----HHHHHHHHhHHHHHHHHHHhcccchhhhheeecccccceEEEeeeeehhcCCcCCCCCcccceeehhh
Confidence 89987776 6899999999999999999999999999999995 9999999999999988 67999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCCCCCchHHHHHHH
Q psy10441 764 VEAMGGINSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIALEPDKAVKKVQ 823 (867)
Q Consensus 764 v~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~~~~~~~~i~~l~ 823 (867)
|++||.+|++| .||..|..++.+||++...++++++.++.+++-.|...|-++..+.+
T Consensus 2676 VdgmGItGveG--vFrRccE~t~~vlR~~~~~lltileVl~yDPLf~W~msplK~~~~q~ 2733 (2806)
T KOG0892|consen 2676 VDGMGITGVEG--VFRRCCEFTLEVLRREKESLLTILEVLLYDPLFSWLMSPLKALKKQK 2733 (2806)
T ss_pred ccccCccCchH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcchHHHhhcHHHHHHHHH
Confidence 99999999999 89999999999999999999999999999999999998887777664
No 40
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=100.00 E-value=5.5e-40 Score=326.48 Aligned_cols=159 Identities=47% Similarity=0.887 Sum_probs=150.2
Q ss_pred eecCCCCCchhhhhcCccccccCCccccccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccce
Q psy10441 27 LEGVTLKPDYEKMLSDPMLKYSGLYQEVCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAI 106 (867)
Q Consensus 27 LeG~~~~~~~~~~l~~p~l~~~~~~~~~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~ 106 (867)
|||..+..+++.++++|.+++.+++.+..+++||+|||||||+|||.|++|+|++|++.+.|||||+|||+|+||||+|+
T Consensus 1 leg~~~~~~~s~~~~~p~l~~~~~~~~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~ 80 (159)
T cd08397 1 LEGKVPLLSLSEKLEDPVLRFSGSNVSPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQ 80 (159)
T ss_pred CCCcccCcChhhhcCCchhhhhccccCCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhhe
Confidence 68988888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCCCceeEEEEEEEceecCCcccccceeeEeccCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhhCCC
Q psy10441 107 LALTIYDCGGATQLIPIGGTCISLFGKYGVFRQGMMDLKVWPNQVADPKVPSSTPGKNTSSEKEQRETLAKLSKKFHNGH 186 (867)
Q Consensus 107 L~~tI~~~~~~~~~~~vG~t~i~LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~~tp~~~~~~~~~e~~rl~~l~~k~~~g~ 186 (867)
||||||++.+.++..+|||+|++|||++|+||+|+++|+|||+.++|+..+++ |++.+.....||+||+|++|||++|+
T Consensus 81 L~iti~~~~~~~~~~~vg~~~~~lFd~~g~Lr~G~~~l~lw~~~~~d~~~~t~-~~~~~~~~~~el~rLekl~kkye~G~ 159 (159)
T cd08397 81 LAITIWDVSGTGKAVPFGGTTLSLFNKDGTLRRGRQKLRVWPDVEADGSIPTS-TGKSPDSERDELDRLEKLLKKYERGE 159 (159)
T ss_pred EEEEEEEecCCCCceEEEEEEEeeECCCCcEecCCEEEEEEeCCCCCCccccC-CCCccCcchhhHHHHHHHHHHhhcCC
Confidence 99999999887788999999999999999999999999999999999998877 44555567789999999999999995
No 41
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=100.00 E-value=1.3e-36 Score=303.59 Aligned_cols=155 Identities=23% Similarity=0.408 Sum_probs=138.9
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHhchhhhhhchhhHHhhhccccCCChHHHHHHHHHhhccCCCCHhhHhhccCCCCC-CH
Q psy10441 296 LNTIISYPPSNQLTTEEQDLIWKFRFYLSNQKKALTKFLECVNWELQAEARQALDLLDQWAPMDVEDSLQLLSPAFK-HS 374 (867)
Q Consensus 296 L~~i~~~~p~~~L~~~ek~llWk~R~~l~~~p~aL~kfL~sV~W~~~~e~~~a~~lL~~W~~i~~~~ALeLL~~~f~-~~ 374 (867)
+.-+.++| +..|+.++++|||++|+++.++|+||++|| +|++..++.+++++|..|+|++|++|||||++.|+ |+
T Consensus 10 v~l~~Rfp-~~~l~~e~~~Lv~~~p~~~~~~p~AL~~~l---~~~~~~~~~~~l~~Ll~W~pi~p~~ALell~~~y~~~~ 85 (175)
T cd00871 10 IHLPSRFP-NSKLKSEVTRLVRKHPLAVVKIPEALPFLV---TGKSVDENSPDLKYLLYWAPVSPVQALSLFTPQYPGHP 85 (175)
T ss_pred HHHHHhCC-ChhhhHHHHHHHHHCHHHHhcCHHHHHHHh---CccChhhHHHHHHHHcCCCCCCHHHHHHHhCcccCCCH
Confidence 55666777 889999999999999999999999999997 69999999999999999999999999999999998 89
Q ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHhcccccccccccccccCCCcchhhhhhhhhhccccccccccCCcccchhHHH
Q psy10441 375 AVRRYAVTRLQQASDEDLLLYLLQLVQALKYENFEDIMHGYKKLKVPPAIEASVLAEEMSSNVLEYNLDSSHAENMDLTS 454 (867)
Q Consensus 375 ~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~La~ 454 (867)
.||+|||++|++++||+|++||||||||||||.. +.|++
T Consensus 86 ~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~~-----------------------------------------~~l~~ 124 (175)
T cd00871 86 LVLQYAVRVLESYPVETVFFYIPQIVQALRYDKM-----------------------------------------GYVEE 124 (175)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccc-----------------------------------------chHHH
Confidence 9999999999999999999999999999999974 88999
Q ss_pred HHHHHHhcCcchhhHHHHHhhhhccCcccchhhhhHHHHHH
Q psy10441 455 FLIHRASKSLTLANYFFWYLTIESEDQDFTIKQDIRVREMY 495 (867)
Q Consensus 455 fLi~ra~~n~~i~~~l~W~L~~e~~~~~~~~~~~~~~~~~y 495 (867)
|||+||..|+.+||+|||+|++|+..++.....++.+.+..
T Consensus 125 FLl~~A~~s~~faHql~W~lkae~~~de~~~~~~~~i~~~l 165 (175)
T cd00871 125 YILETAKRSQLFAHQIIWNMQTNCYKDEEGKPKDPAIKPTL 165 (175)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhccCCcccccCCcchHHHH
Confidence 99999999999999999999999976654321233444433
No 42
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=99.97 E-value=2e-31 Score=261.20 Aligned_cols=132 Identities=40% Similarity=0.827 Sum_probs=105.2
Q ss_pred cceEEEEEEEECCeeeecce-ecccccCC-CCccccceEEeccccCCcCccceEEEEEEEecCCCCc----eeEEEEEEE
Q psy10441 56 ADLVVFCQIFSDGVPLSLPI-SSSYKSFT-NRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQL----IPIGGTCIS 129 (867)
Q Consensus 56 ~~l~V~~ql~~g~~~L~~pv-~T~~~~f~-~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~----~~vG~t~i~ 129 (867)
+++||+|+|||||++||.|+ .|++++++ ..+.|||||+|||.||||||+|+|||+||++...... .+|||++++
T Consensus 2 ~~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~ 81 (142)
T PF00792_consen 2 SKLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLP 81 (142)
T ss_dssp EEEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEE
T ss_pred CeEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEE
Confidence 57999999999999999999 89999998 7899999999999999999999999999999876544 799999999
Q ss_pred ceecCCcccccceeeEeccCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhhCCCCCc---cchhhhhhH
Q psy10441 130 LFGKYGVFRQGMMDLKVWPNQVADPKVPSSTPGKNTSSEKEQRETLAKLSKKFHNGHMVK---IDWLDRLTF 198 (867)
Q Consensus 130 LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~~tp~~~~~~~~~e~~rl~~l~~k~~~g~~~~---~~WlD~~~~ 198 (867)
|||++|.||+|.+.|+|||..+++...++ +|++++++++++|++|++++ |+|||++||
T Consensus 82 lFd~~~~L~~G~~~L~lW~~~~~~~~~~~-----------~~~~~l~~~~~~~~~g~~~~~~~v~wld~l~~ 142 (142)
T PF00792_consen 82 LFDYRGQLRQGPQKLSLWPDEEPDPSGPT-----------DELNRLEKLLKKYERGEIPHPPIVEWLDFLTF 142 (142)
T ss_dssp SB-TTSBBEEEEEEEE-EET-TTSS---------------SSS-TTSTCSS-S-SSS-EEEEEEE--SSE--
T ss_pred eECCCCcccCCCEEEEEEcCCCCcccccc-----------cccchhhHhhccCcCCCcCCCCCcccccCCCC
Confidence 99999999999999999998876655432 46789999999999999999 999999987
No 43
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=99.96 E-value=9e-30 Score=252.67 Aligned_cols=115 Identities=26% Similarity=0.460 Sum_probs=103.4
Q ss_pred ccCccEEEEEeeeecCCCCCchhhhhcCccccccCCccccccceEEEEEEEECCeeeecceecccccCCCCccccceEEe
Q psy10441 15 DVEAKIQIKIGTLEGVTLKPDYEKMLSDPMLKYSGLYQEVCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITI 94 (867)
Q Consensus 15 dl~~~v~ikI~~LeG~~~~~~~~~~l~~p~l~~~~~~~~~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~f 94 (867)
|++.+++|||.++.+ ++..+.+++||+||||||+++||.|++|++++| +.+.|||||+|
T Consensus 5 d~~~~~~v~i~~~~~--------------------~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~f 63 (158)
T cd08398 5 KINSNLRIKILCATY--------------------VNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDY 63 (158)
T ss_pred eCCCCeEEEEEeecc--------------------CCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEc
Confidence 789999999998776 223356799999999999999999999999999 66889999999
Q ss_pred ccccCCcCccceEEEEEEEecCC----CCceeEEEEEEEceecCCcccccceeeEeccCC
Q psy10441 95 PLMFSDLPRNAILALTIYDCGGA----TQLIPIGGTCISLFGKYGVFRQGMMDLKVWPNQ 150 (867)
Q Consensus 95 pI~~~dLPr~a~L~~tI~~~~~~----~~~~~vG~t~i~LFd~~~~Lr~G~~~L~lwp~~ 150 (867)
||+|+||||+|+||||||++.+. ++..+|||++++|||++|+||+|.++|+|||..
T Consensus 64 pI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~~~~Lr~G~~~L~lW~~~ 123 (158)
T cd08398 64 DIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDYTDTLVSGKMALNLWPVP 123 (158)
T ss_pred ccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEECCCChhhCCCEEEEEEcCC
Confidence 99999999999999999998753 245799999999999999999999999999964
No 44
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=99.96 E-value=4.6e-29 Score=251.88 Aligned_cols=120 Identities=25% Similarity=0.356 Sum_probs=107.2
Q ss_pred cccCccEEEEEeeeecCCCCCchhhhhcCccccccCCccccccceEEEEEEEECCeeeecceecccccCCCCccccceEE
Q psy10441 14 CDVEAKIQIKIGTLEGVTLKPDYEKMLSDPMLKYSGLYQEVCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWIT 93 (867)
Q Consensus 14 ~dl~~~v~ikI~~LeG~~~~~~~~~~l~~p~l~~~~~~~~~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~ 93 (867)
=|++.+++|+|.++++-.- .+...++||+|+|||||++||.|+.|++++|.+.+.|||||+
T Consensus 4 w~~~~~f~i~i~~~~~~~~-------------------~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~ 64 (173)
T cd08693 4 WDIEEKFSITLHKISNLNA-------------------AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLE 64 (173)
T ss_pred eccCCCEEEEEEEeccCcc-------------------CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEE
Confidence 4889999999999988321 245679999999999999999999999999988899999999
Q ss_pred eccccCCcCccceEEEEEEEecCCC----------------CceeEEEEEEEceecCCcccccceeeEeccCCCC
Q psy10441 94 IPLMFSDLPRNAILALTIYDCGGAT----------------QLIPIGGTCISLFGKYGVFRQGMMDLKVWPNQVA 152 (867)
Q Consensus 94 fpI~~~dLPr~a~L~~tI~~~~~~~----------------~~~~vG~t~i~LFd~~~~Lr~G~~~L~lwp~~~~ 152 (867)
|||+|+||||+|+|||+||++.... +..+|||++++|||++++||+|.+.|+|||..+.
T Consensus 65 F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~~Lr~G~~~L~lW~~~~~ 139 (173)
T cd08693 65 FDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQLKTGDHTLYMWTYAED 139 (173)
T ss_pred cccchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcccchhhcCCeEEEecCCCcc
Confidence 9999999999999999999987532 2579999999999999999999999999997653
No 45
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=99.95 E-value=3.5e-28 Score=245.48 Aligned_cols=129 Identities=28% Similarity=0.553 Sum_probs=113.6
Q ss_pred ecccCccEEEEEeeeecCCCCCchhhhhcCccccccCCccccccceEEEEEEEECCeeeecceecc----cccCCCCccc
Q psy10441 13 SCDVEAKIQIKIGTLEGVTLKPDYEKMLSDPMLKYSGLYQEVCADLVVFCQIFSDGVPLSLPISSS----YKSFTNRWDW 88 (867)
Q Consensus 13 S~dl~~~v~ikI~~LeG~~~~~~~~~~l~~p~l~~~~~~~~~~~~l~V~~ql~~g~~~L~~pv~T~----~~~f~~~~~W 88 (867)
+.|++.+++|+|.++.+..... .+..+++||+|+||||+++||.|+.|+ |++|..++.|
T Consensus 3 ~~~v~~~~~i~v~~~h~~~~~~-----------------~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~W 65 (171)
T cd04012 3 ASTVTDLLSVTVSSLHRIPPTW-----------------VQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVW 65 (171)
T ss_pred cccccccEEEEEEEeecCChHH-----------------hhccccEEEEEEEEECCEECcCceeccccccccCccccccc
Confidence 5689999999999999954432 133579999999999999999999996 7778888999
Q ss_pred cceEEeccccCCcCccceEEEEEEEecCCC---------CceeEEEEEEEceecCCcccccceeeEeccCCCCCCCCCC
Q psy10441 89 NEWITIPLMFSDLPRNAILALTIYDCGGAT---------QLIPIGGTCISLFGKYGVFRQGMMDLKVWPNQVADPKVPS 158 (867)
Q Consensus 89 newl~fpI~~~dLPr~a~L~~tI~~~~~~~---------~~~~vG~t~i~LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~ 158 (867)
||||+|||+|+||||+|+|||+||++...+ +..+|||++++|||++|.||+|.+.|+|||..++++..++
T Consensus 66 newl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~~L~~G~~~L~lW~~~~~~~~~~~ 144 (171)
T cd04012 66 DEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRGVLRQGSLLLGLWPPSKDNPLGPA 144 (171)
T ss_pred cceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcchhhhccCCEEEEeccCCccCcCCCC
Confidence 999999999999999999999999988654 4689999999999999999999999999998887766544
No 46
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=99.95 E-value=7.9e-28 Score=242.27 Aligned_cols=119 Identities=23% Similarity=0.296 Sum_probs=102.3
Q ss_pred ecccCccEEEEEeeeecCCCCCchhhhhcCccccccCCccccccceEEEEEEEECCeeeecceecccccCCCCccccceE
Q psy10441 13 SCDVEAKIQIKIGTLEGVTLKPDYEKMLSDPMLKYSGLYQEVCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWI 92 (867)
Q Consensus 13 S~dl~~~v~ikI~~LeG~~~~~~~~~~l~~p~l~~~~~~~~~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl 92 (867)
.=|++.|++|||.+++- +.. ..+....+||+|+||||++++| |++|+|++|++.+.|||||
T Consensus 5 lwdi~~~friki~~~~~--~~~----------------~~~~~~~l~V~~~Ly~g~~~l~-~~~T~~~~~~~~~~WnEwL 65 (178)
T cd08399 5 LWDCDRKFRVKILGIDI--PVL----------------PRNTDLTVFVEANIQHGQQVLC-QRRTSPKPFTEEVLWNTWL 65 (178)
T ss_pred eEecCCCEEEEEEeecc--cCc----------------CCCCceEEEEEEEEEECCeecc-cceeeccCCCCCccccccE
Confidence 35899999999888862 211 1223458999999999999998 6789999999999999999
Q ss_pred EeccccCCcCccceEEEEEEEecCCC----------------CceeEEEEEEEceecCCcccccceeeEeccCC
Q psy10441 93 TIPLMFSDLPRNAILALTIYDCGGAT----------------QLIPIGGTCISLFGKYGVFRQGMMDLKVWPNQ 150 (867)
Q Consensus 93 ~fpI~~~dLPr~a~L~~tI~~~~~~~----------------~~~~vG~t~i~LFd~~~~Lr~G~~~L~lwp~~ 150 (867)
+|||+|+||||+|+|||+||++.+.. +..||||+|++|||++|+||||.+.|++||..
T Consensus 66 ~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~~Lr~G~~~L~~W~~~ 139 (178)
T cd08399 66 EFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRFLLRTGEYVLHMWQIS 139 (178)
T ss_pred ECccccccCChhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEcCCCceecCCEEEEEecCC
Confidence 99999999999999999999986431 36799999999999999999999999999953
No 47
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.94 E-value=6.7e-27 Score=232.72 Aligned_cols=124 Identities=35% Similarity=0.659 Sum_probs=106.9
Q ss_pred cccCccEEEEEeeeecCCCCCchhhhhcCccccccCCccccccceEEEEEEEECCeeeecceecccccCC-CCccccceE
Q psy10441 14 CDVEAKIQIKIGTLEGVTLKPDYEKMLSDPMLKYSGLYQEVCADLVVFCQIFSDGVPLSLPISSSYKSFT-NRWDWNEWI 92 (867)
Q Consensus 14 ~dl~~~v~ikI~~LeG~~~~~~~~~~l~~p~l~~~~~~~~~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~-~~~~Wnewl 92 (867)
-|++.+++|||.++.|... +....++++|+|||||||++++.++.| ++.+. ..+.|||||
T Consensus 4 ~di~~~~~i~i~~~~~~~~------------------~~~~~~~l~V~~~l~~g~~~l~~~~~t-~~~~~~~~~~Wne~l 64 (156)
T cd08380 4 WDINFNLRIKIHGITNINL------------------LDSEDLKLYVRVQLYHGGEPLCPPQST-KKVPFSTSVTWNEWL 64 (156)
T ss_pred eecCCCeEEEEEeeccccc------------------cCCCceeEEEEEEEEECCEEccCceec-cCCcCCCCCccccee
Confidence 4889999999999999533 234567999999999999998755544 55554 779999999
Q ss_pred EeccccCCcCccceEEEEEEEecCCC--CceeEEEEEEEceecCCcccccceeeEeccCCCCCCCC
Q psy10441 93 TIPLMFSDLPRNAILALTIYDCGGAT--QLIPIGGTCISLFGKYGVFRQGMMDLKVWPNQVADPKV 156 (867)
Q Consensus 93 ~fpI~~~dLPr~a~L~~tI~~~~~~~--~~~~vG~t~i~LFd~~~~Lr~G~~~L~lwp~~~~d~~~ 156 (867)
+|||.|+||||+|+|||+||++...+ +..+|||++++|||++|+||+|.+.|+|||..++++..
T Consensus 65 ~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~~~~L~~G~~~l~lW~~~~~~~~~ 130 (156)
T cd08380 65 TFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDYKGKLRQGMITLNLWPGKKTDPRI 130 (156)
T ss_pred EccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcccCcEecCCEEEeccCCcccCccc
Confidence 99999999999999999999988764 56899999999999999999999999999988877654
No 48
>KOG0891|consensus
Probab=99.94 E-value=8.5e-28 Score=308.16 Aligned_cols=235 Identities=26% Similarity=0.460 Sum_probs=203.6
Q ss_pred cCCCCcEEEEEEeeCceeeecCCCcceEEEEEecCCCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCC----CCCccc
Q psy10441 573 LPLDPNVYIKGIIPEKATLFKSNLMPSRLTFLTTTGTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSEN----LDLKLT 648 (867)
Q Consensus 573 lPl~p~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dG~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~----ldl~l~ 648 (867)
-|..|.+.|.+|.+ +..|+.|+++|.++..+++||+.|.++.|.+.|+|||+++||++.+||.++..+. +.+.+.
T Consensus 1951 ~~~~~~i~i~~f~~-~~~vitskqRprkl~i~gs~g~d~~~~lkghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr~L~iq 2029 (2341)
T KOG0891|consen 1951 DPGKPIIRIQSFEP-KFNVITSKQRPRKLVIRGSDGKDYQYLLKGHEDLRQDERVMQLFGLVNTLLANDSETFRRNLTIQ 2029 (2341)
T ss_pred CCCceEEehhhccH-HHHHHHHHhhhHHHhhcccchhhHHHHhhchhhhhhHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 34456677888875 6789999999999999999999999999999999999999999999999998875 678899
Q ss_pred ccEEEEecCCcceeeeec-CccHHHHHhhcC-------------------------------------------cHHHHH
Q psy10441 649 PYRVLATNTKHGFVQFVD-SFPVAEVLATEG-------------------------------------------SIQNFF 684 (867)
Q Consensus 649 ~Y~Vip~~~~~GlIE~V~-s~tl~~I~~~~~-------------------------------------------~l~~~l 684 (867)
.|.++|.+++.|+|+||+ +.|++..++.+- .+..-+
T Consensus 2030 ~Y~~i~ls~~sgL~gWv~~~dtlh~L~r~~r~~k~i~l~~eh~~~~~~~l~~~~ltl~qk~~vfe~~~~~t~G~dl~~~l 2109 (2341)
T KOG0891|consen 2030 RYSVIPLSPDSGLIGWVPNCDTLHTLIREYREKKKIPLNIEHRVMLQMAPDYDHLTLMQKVEVFEYALSNTQGDDLYKVL 2109 (2341)
T ss_pred HhhhcCCCCCCceeeeecccccHHHHHHHHHHhhccCCcchHHHHHhcCccccchhhhhHHhHhHHHhhcCcHHHHHHHH
Confidence 999999999999999998 889988876540 011111
Q ss_pred HhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEec-CCCEEEEeeccccCCC----CCCCCCcccc
Q psy10441 685 RKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTT-SGKLFHIDFGYILGRD----PKPLPPPMKL 759 (867)
Q Consensus 685 ~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~-tG~lfHIDFG~ilg~~----~k~e~vPFrL 759 (867)
.-..++...|+ ..+.+|++|.|++|+++|++|+||||+.|+|++. +|+++|||||.+|+.. ++|+.+||||
T Consensus 2110 wlkS~ssEaw~----~rrt~yt~S~A~msmvgyilGlGdrhpsNlmldr~tgkvihidfgdcfevA~~rek~pe~~pfRl 2185 (2341)
T KOG0891|consen 2110 WLKSPSSEAWL----DRRTNYTRSLAVMSMVGYILGLGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPEKVPFRL 2185 (2341)
T ss_pred HHhCCChhHHH----HHhhhhHHHHHHHHHHHHHhhccccchhhhhhhhcccceEEechHHHHHHHHhhccccccccHHH
Confidence 11122222232 4688999999999999999999999999999996 9999999999999865 6899999999
Q ss_pred cHHHHHHhCCCCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCCCCC
Q psy10441 760 SKEMVEAMGGINSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIALE 814 (867)
Q Consensus 760 T~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~~~~ 814 (867)
|+.++++|-..|-+| .|+..|..+..++|.+...+.+.++.++-+++.+|+..
T Consensus 2186 Trmli~amev~gl~g--~~~~t~e~v~~~lr~~~~sl~a~leafvydplinwr~~ 2238 (2341)
T KOG0891|consen 2186 TRMLINAMEVTGIEG--TYRITCEHVMRVLRTNKESLMAVLEAFVYDPLINWRLD 2238 (2341)
T ss_pred HHHHHHhHHHHhhhh--HHHHHHHHHHHhhcCChHHHHHHHHhhhcccchhhhcc
Confidence 999999998888887 89999999999999999999999999999999988865
No 49
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=99.83 E-value=4e-21 Score=177.40 Aligned_cols=94 Identities=37% Similarity=0.618 Sum_probs=82.2
Q ss_pred EEEeeeecCCCCC-chhhhhcCccccccCCccccccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCC
Q psy10441 22 IKIGTLEGVTLKP-DYEKMLSDPMLKYSGLYQEVCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSD 100 (867)
Q Consensus 22 ikI~~LeG~~~~~-~~~~~l~~p~l~~~~~~~~~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~d 100 (867)
+||++|+|..... .....+++|.+...+.+ +++||+|||||||++||.|+.|++++|.+.+.|||||+|||+|+|
T Consensus 1 ~ki~sL~~~~~~~~~~~~~~~~~~l~~~~~~----~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~ 76 (100)
T smart00142 1 VKIESLWDCDRNLVITIALIHGIPLNWSRDY----SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISD 76 (100)
T ss_pred CcEEEeecCCCceEEEEEEeeCCCcccccCc----ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhc
Confidence 4899999876633 35667788888776655 699999999999999999999999999999999999999999999
Q ss_pred cCccceEEEEEEEecCCCC
Q psy10441 101 LPRNAILALTIYDCGGATQ 119 (867)
Q Consensus 101 LPr~a~L~~tI~~~~~~~~ 119 (867)
|||+|+|||+||++.++.+
T Consensus 77 LPr~a~L~~~i~~~~~~~~ 95 (100)
T smart00142 77 LPREARLCITIYEVKNPSK 95 (100)
T ss_pred CChhhEEEEEEEEeeCCcc
Confidence 9999999999999876543
No 50
>KOG0889|consensus
Probab=99.54 E-value=2.2e-14 Score=185.65 Aligned_cols=239 Identities=17% Similarity=0.241 Sum_probs=202.7
Q ss_pred CCCcccCCC---------CcEEEEEEeeCceeeecCCCcceEEEEEecCCCeEEEEE--eeCCchhhHHHHHHHHHHHHH
Q psy10441 568 FEPLPLPLD---------PNVYIKGIIPEKATLFKSNLMPSRLTFLTTTGTEYVAIF--KHGDDLRQDQLILQIITLMDK 636 (867)
Q Consensus 568 ~~~~~lPl~---------p~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dG~~~~~i~--K~GDDLRqD~l~lQli~lmd~ 636 (867)
+..+.+|.+ ..++|.+|.|....|.+..++-+|++.+|+||+.|.+.+ +.--+-|.++|++|+.+++|.
T Consensus 3172 ~~evEiPGqyl~~k~~~~~~v~I~RF~P~veiv~~~~~~~rRl~iRG~dGk~~~~~~~~~~~~~sRreErvlQL~r~lN~ 3251 (3550)
T KOG0889|consen 3172 FDEVEIPGQYLLDKSNNNYFVKIERFEPRVEIVRGHGMSYRRLYIRGSDGKIYPFAVQYPGLRNSRREERVLQLFRMLNE 3251 (3550)
T ss_pred CCcccCChHHhcccchhhhhhhHHHhccchhhhcccceeEEEEEEeccCCeecceeeecccCCCccHHHHHHHHHHHHHH
Confidence 445666643 347889999999999999999999999999999995544 444778999999999999999
Q ss_pred HHHhCC----CCCcccccEEEEecCCcceeeeec-CccHHHHHhhc----------------------------------
Q psy10441 637 LLRSEN----LDLKLTPYRVLATNTKHGFVQFVD-SFPVAEVLATE---------------------------------- 677 (867)
Q Consensus 637 ll~~~~----ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~I~~~~---------------------------------- 677 (867)
.+.+.+ +.+.+....++|+++...++|..| +.|+.+|++++
T Consensus 3252 ~l~~~~Et~rR~l~~~~p~~ipvs~q~rl~ed~ps~~tl~~I~~~~c~~~~~~~D~~i~~~~d~l~~~~~~~~~~~~~~~ 3331 (3550)
T KOG0889|consen 3252 SLGKNKETRRRHLEFKLPIVIPVSSQMRLVEDKPSSITLQEIYEEYCARNNVSPDDPILLYFDRLAQAYSVLIGLTAAHQ 3331 (3550)
T ss_pred HhccChhhhhhhcCccCceeeeccCceEEecCCcchhhHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHhhccCchHHHH
Confidence 998874 688999999999999999999999 89999998764
Q ss_pred ----------------CcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEec-CCCEEEE
Q psy10441 678 ----------------GSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTT-SGKLFHI 740 (867)
Q Consensus 678 ----------------~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~-tG~lfHI 740 (867)
..+.+|+.+.+++....|. .|++|+.++|..++++|++.+|-|-++.+++.+ +|.++--
T Consensus 3332 lr~~i~e~i~~~~vp~sil~dy~~~tf~~~~d~w~----frk~f~~qla~~~~~~~~lni~~~~p~k~~~~~dsG~v~~~ 3407 (3550)
T KOG0889|consen 3332 LRGQIFEDIQKTMVPRSILKDYFYKTFTNYSDFWT----FRKQFTDQLAVFSFMEYMLNINGRGPAKLTFAKDSGKVFNT 3407 (3550)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHhcCChhhhhh----hHhHHHHHHHHHHHHHHHHhcCCCCccceeeeeccccccch
Confidence 2346788888888766665 499999999999999999999999999999995 9999999
Q ss_pred eeccccCCC-C---CCCCCcccccHHHHHHhCCCCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHhcCCCCCCC
Q psy10441 741 DFGYILGRD-P---KPLPPPMKLSKEMVEAMGGINSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIA 812 (867)
Q Consensus 741 DFG~ilg~~-~---k~e~vPFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~lil~l~~lml~~~ip~~~ 812 (867)
||-+-.... + +.++|||||||++.+.+|..+.+| .+...++.+.+++-++-..+-..+.+++++.+..|.
T Consensus 3408 ~~~~~~~~~~~~~~~~~~VpFRlTpni~~~i~~~~veg--~l~~s~~a~ar~l~~p~~~l~~~l~~~~RDE~~~w~ 3481 (3550)
T KOG0889|consen 3408 DFLPSYISSKPIFHNNEPVPFRLTPNIQEFIGDFGVEG--LLAGSMMAIARCLIEPDFELDPYLQLFFRDEIISWF 3481 (3550)
T ss_pred hhccCcccCccccccCCcCCeeecCCchhhhcchhhhh--hhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHh
Confidence 987766333 2 457999999999999999889998 688899999999999988887788888776654443
No 51
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=96.87 E-value=0.0044 Score=60.55 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=62.8
Q ss_pred cccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 54 VCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 54 ~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
+.++.||.+.+..+++.+. ...|.-+.-+.++.|||-+.|+|.-.+|+. +.|.|+||+....++...||.+.++.+.
T Consensus 33 ~~~d~yVkv~l~~~~~~~~-~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~-~~L~~~V~~~~~~~~~~~lG~v~ig~~~ 109 (137)
T cd08409 33 AHTSVYVKVSLMIHNKVVK-TKKTEVVDGAASPSFNESFSFKVTSRQLDT-ASLSLSVMQSGGVRKSKLLGRVVLGPFM 109 (137)
T ss_pred CCCCeEEEEEEEECCEEee-eeecccEeCCCCCcccceEEEECCHHHhCc-cEEEEEEEeCCCCCCcceEEEEEECCcc
Confidence 3468999999999887654 346766656677899999999998888875 8999999998876667789999999764
No 52
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=96.74 E-value=0.0093 Score=58.05 Aligned_cols=79 Identities=19% Similarity=0.084 Sum_probs=60.1
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEceecC
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFGKY 134 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd~~ 134 (867)
.+|-||.+++.+|++... ...|..+.-+.++.|||.+.|++.-.++. ++.|.|+|||....++...||.+.|..+...
T Consensus 34 ~~DPyV~v~l~~~~~~~~-~~kT~v~~~t~nP~wnE~F~f~i~~~~l~-~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~ 111 (135)
T cd08410 34 GSDPFVKIQLVHGLKLIK-TKKTSCMRGTIDPFYNESFSFKVPQEELE-NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG 111 (135)
T ss_pred CCCeEEEEEEEcCCcccc-eEcCccccCCCCCccceeEEEeCCHHHhC-CCEEEEEEEeCCCCCCCcEEEEEEEcCccCC
Confidence 468899999987776553 23555555556789999999998777775 5689999999876667789999988776543
Q ss_pred C
Q psy10441 135 G 135 (867)
Q Consensus 135 ~ 135 (867)
+
T Consensus 112 ~ 112 (135)
T cd08410 112 P 112 (135)
T ss_pred c
Confidence 3
No 53
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=96.57 E-value=0.013 Score=57.37 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=58.7
Q ss_pred ccceEEEEEEEECCeeeecceecccccCC-CCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFT-NRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~-~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||.+.|+++++-+.. ..|+-+--+ +.+.|||-+.|+|...++ +..|.+++||....++...||++.+..-.
T Consensus 34 ~~dpYVKV~L~~~~k~~~K-kKT~v~k~t~~~P~fNEsF~Fdv~~~~~--~v~l~v~v~d~~~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 34 TLSFFVKVGMFSTGGLLYK-KKTRLVKSSNGQVKWGETMIFPVTQQEH--GIQFLIKLYSRSSVRRKHFLGQVWISSDS 109 (135)
T ss_pred CCCcEEEEEEEECCCccee-ecCccEECCCCCceecceEEEeCCchhh--eeEEEEEEEeCCCCcCCceEEEEEECCcc
Confidence 3478999999999998864 456655444 457799999999998643 68999999998765566789998887653
No 54
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=96.54 E-value=0.023 Score=50.14 Aligned_cols=74 Identities=20% Similarity=0.078 Sum_probs=56.2
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEceecC
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFGKY 134 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd~~ 134 (867)
..+.||.+.+...+ ....+|....-+..+.|||-+.|++...+ ...|.|+||+....++...+|.+.++|.+-.
T Consensus 20 ~~~~yv~v~~~~~~---~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~ 93 (101)
T smart00239 20 KSDPYVKVSLDGDP---KEKKKTKVVKNTLNPVWNETFEFEVPPPE---LAELEIEVYDKDRFGRDDFIGQVTIPLSDLL 93 (101)
T ss_pred CCCceEEEEEeCCc---cceEeeeEecCCCCCcccceEEEEecCcc---cCEEEEEEEecCCccCCceeEEEEEEHHHcc
Confidence 45789998887655 22345655555557899998888876655 8999999999876556789999999988743
No 55
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=96.50 E-value=0.0076 Score=57.94 Aligned_cols=76 Identities=20% Similarity=0.138 Sum_probs=57.6
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||.+.+..++..... .+|+.+.-+..+.|||.+.|+|...+|. +..|.|+|||...-++...+|.+.++|=+
T Consensus 36 ~~DpyVkv~l~p~~~~~~~-~kT~v~~~t~nP~wnE~f~f~i~~~~l~-~~~L~~~V~d~~~~~~~~~lG~~~i~l~~ 111 (125)
T cd04029 36 RSNPYVKTYLLPDKSRQSK-RKTSIKRNTTNPVYNETLKYSISHSQLE-TRTLQLSVWHYDRFGRNTFLGEVEIPLDS 111 (125)
T ss_pred CCCcEEEEEEEcCCccccc-eEeeeeeCCCCCcccceEEEECCHHHhC-CCEEEEEEEECCCCCCCcEEEEEEEeCCc
Confidence 4577999999776653332 3566555556788999999999888884 45799999997665667789999999843
No 56
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=96.47 E-value=0.009 Score=57.17 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=59.8
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEce
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLF 131 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LF 131 (867)
.+|=||.+.|..+++.- ..+|+-+--+-++.|||-+.|+|...+|+. ..|.|+|||...-++..+||.+.++|=
T Consensus 31 ~sDPYVKv~L~~~~k~~--k~kT~v~rktlnPvfnE~f~F~v~~~~l~~-~tL~~~V~d~Drfs~~d~IG~v~l~l~ 104 (118)
T cd08677 31 GCECYISGCVSVSEGQK--EAQTALKKLALHTQWEEELVFPLPEEESLD-GTLTLTLRCCDRFSRHSTLGELRLKLA 104 (118)
T ss_pred CCCeEEEEEEcCCcCcc--EEEcceecCCCCCccccEEEEeCCHHHhCC-cEEEEEEEeCCCCCCCceEEEEEEccc
Confidence 46889999998765522 346777666677899999999999999875 579999999887677789999999884
No 57
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=96.47 E-value=0.034 Score=53.84 Aligned_cols=77 Identities=16% Similarity=0.059 Sum_probs=58.2
Q ss_pred cccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 54 VCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 54 ~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
+.++-||.+.|..+..... ..+|..+.-+.++.|||-+.|+|.-.+|+. ..|.|+||+...-++...+|++.|+|=+
T Consensus 35 g~~dpYVkv~llp~~~~~~-k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~-~~L~v~V~~~~~~~~~~~lG~~~i~L~~ 111 (128)
T cd08392 35 KKCHPYVKVCLLPDKSHNS-KRKTAVKKGTVNPVFNETLKYVVEADLLSS-RQLQVSVWHSRTLKRRVFLGEVLIPLAD 111 (128)
T ss_pred CCCCeEEEEEEEeCCcccc-eeecccccCCCCCccceEEEEEcCHHHhCC-cEEEEEEEeCCCCcCcceEEEEEEEcCC
Confidence 4568899999987764432 235666555567889999999987777664 6899999997655566799999999843
No 58
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=96.44 E-value=0.039 Score=56.60 Aligned_cols=67 Identities=28% Similarity=0.368 Sum_probs=54.6
Q ss_pred CCCccccceEEeccccCCcCccceEEEEEEEecCCCC------ceeEEEEEEEceecCCcccccceeeEeccCCC
Q psy10441 83 TNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQ------LIPIGGTCISLFGKYGVFRQGMMDLKVWPNQV 151 (867)
Q Consensus 83 ~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~------~~~vG~t~i~LFd~~~~Lr~G~~~L~lwp~~~ 151 (867)
.+.+.|+|-|++.+. .+|....-|.||+|.++...+ ..++|-+-+||+. +|+|+.|.+.|.|-....
T Consensus 64 nk~P~f~DEiKi~LP-~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~-~g~L~~g~~~LpV~~~~~ 136 (179)
T cd08696 64 NKSPDFYDEIKIKLP-ADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR-NGRLQSGEFNLPVSLEKP 136 (179)
T ss_pred CCCCcccceEEEEcC-CCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec-CCEEecCCEEEEEEecCC
Confidence 456889999998776 477889999999999875432 3689999999996 788999999999876543
No 59
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=96.43 E-value=0.01 Score=57.23 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=59.4
Q ss_pred cccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 54 VCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 54 ~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
+.++.||.+.|..+......-.+|+-+--+.++.|||-++|||...+|. +..|.|+||+...-++...+|++.++|=+
T Consensus 33 ~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~-~~~L~~~V~~~~~~~~~~~lG~~~i~L~~ 110 (124)
T cd08680 33 ENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY-QKTLQVDVCSVGPDQQEECLGGAQISLAD 110 (124)
T ss_pred CCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh-cCEEEEEEEeCCCCCceeEEEEEEEEhhh
Confidence 4578999999988765432223555444456788999999999888875 56899999998765667799999999854
No 60
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=96.42 E-value=0.038 Score=52.84 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=56.6
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEecc-ccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPL-MFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI-~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.+|-||.+.+..+.+... ..+|..+.-+.++.|||.+.|++ ...++ .++.|.|+|||...-++...+|.+.++|=+
T Consensus 32 ~~DpyVkv~l~~~~~~~~-~~kT~v~~~~~nP~wnE~F~f~~~~~~~l-~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~ 108 (122)
T cd08381 32 DPDPYVKTYLLPDPQKTT-KRKTKVVRKTRNPTFNEMLVYDGLPVEDL-QQRVLQVSVWSHDSLVENEFLGGVCIPLKK 108 (122)
T ss_pred CCCCEEEEEEeeCCccCC-ceeCCccCCCCCCCcccEEEEecCChHHh-CCCEEEEEEEeCCCCcCCcEEEEEEEeccc
Confidence 457799999987654332 34566665566789999999997 55554 567999999997665566789999999943
No 61
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=96.42 E-value=0.0088 Score=57.43 Aligned_cols=76 Identities=18% Similarity=0.142 Sum_probs=58.2
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||++.+..++.... ..+|..+.-+.++.|||.+.|++.-.+|. +..|.|+|||...-++...+|.+.++|=+
T Consensus 36 ~~dpyVkv~l~p~~~~~~-~~kT~v~~~t~nP~~nE~f~f~v~~~~l~-~~~L~~~V~d~~~~~~~~~iG~~~i~L~~ 111 (125)
T cd08393 36 RSDPYVKTYLLPDKSNRG-KRKTSVKKKTLNPVFNETLRYKVEREELP-TRVLNLSVWHRDSLGRNSFLGEVEVDLGS 111 (125)
T ss_pred CCCcEEEEEEEcCCCccc-cccCccCcCCCCCccCceEEEECCHHHhC-CCEEEEEEEeCCCCCCCcEeEEEEEecCc
Confidence 467899999987664332 23676666666788999999998877774 45799999997655566799999999844
No 62
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=96.39 E-value=0.0082 Score=58.99 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=60.1
Q ss_pred cceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEce
Q psy10441 56 ADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLF 131 (867)
Q Consensus 56 ~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LF 131 (867)
+|-||.+.|.++++.+.. ..|+.+.-+-++.|||-++|+|.-.+|.. ..|.|+|||....++...+|++.+++-
T Consensus 38 ~DpYVKv~l~~~~~k~~k-kkT~v~k~t~nPvfNE~f~F~v~~~~L~~-~~L~~~V~d~d~~~~~d~iG~v~lg~~ 111 (138)
T cd08407 38 IDVSVKVTLKHQNAKLKK-KQTKRAKHKINPVWNEMIMFELPSELLAA-SSVELEVLNQDSPGQSLPLGRCSLGLH 111 (138)
T ss_pred CCeEEEEEEEcCCcccce-eccceeeCCCCCccccEEEEECCHHHhCc-cEEEEEEEeCCCCcCcceeceEEecCc
Confidence 689999999999877653 46666655667889999999998777765 459999999877667779999999884
No 63
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=96.38 E-value=0.027 Score=54.68 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=56.7
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEce
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLF 131 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LF 131 (867)
.++-||++.+-.+++... ..+|..+.-+.++.|||-+.|++...+|. ++.|.|+|||...-++...||.+.+++=
T Consensus 35 ~~dpyv~v~l~~~~~~~~-~~kT~v~~~t~nP~wne~f~f~i~~~~l~-~~~l~~~v~d~~~~~~~~~iG~~~i~~~ 109 (136)
T cd08402 35 LSDPYVKIHLMQNGKRLK-KKKTTIKKRTLNPYYNESFSFEVPFEQIQ-KVHLIVTVLDYDRIGKNDPIGKVVLGCN 109 (136)
T ss_pred CCCCeEEEEEEECCcccc-eeeccceeCCCCCcccceEEEECCHHHhC-CCEEEEEEEeCCCCCCCceeEEEEECCc
Confidence 467799999877666543 33565554455688999999998776664 4689999999876666679999999983
No 64
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=96.38 E-value=0.031 Score=54.21 Aligned_cols=76 Identities=16% Similarity=0.084 Sum_probs=57.2
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++.||.+.+..+++... ..+|..+.-+.++.|||.+.|++...++. ++.|.|+|||....++...+|.+.+++-.
T Consensus 35 ~~dpyV~v~l~~~~~~~~-~~kT~v~~~t~~P~wne~F~f~i~~~~~~-~~~l~~~v~d~~~~~~~~~lG~~~i~~~~ 110 (136)
T cd08405 35 TSDPYVKVWLMYKDKRVE-KKKTVIKKRTLNPVFNESFIFNIPLERLR-ETTLIITVMDKDRLSRNDLIGKIYLGWKS 110 (136)
T ss_pred CCCceEEEEEEeCCCccc-cccCcceeCCCCCcccceEEEeCCHHHhC-CCEEEEEEEECCCCCCCcEeEEEEECCcc
Confidence 468899999987765443 23565555556789999999998766654 67899999998665556789999998754
No 65
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=96.36 E-value=0.038 Score=52.91 Aligned_cols=77 Identities=19% Similarity=0.117 Sum_probs=59.6
Q ss_pred cccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 54 VCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 54 ~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
..++.||++.+..++.... ..+|..+.-+..+.|||-+.|++.-.+| ....|.|+|||....++...||.+.++|-+
T Consensus 33 ~~~dpyv~v~l~~~~~~~~-~~~T~~~~~~~~P~wne~f~f~i~~~~l-~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 33 GLSDPYVKVSLLQGGKKLK-KKKTSVKKGTLNPVFNEAFSFDVPAEQL-EEVSLVITVVDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCCcEEEEEEEcCCeEee-eecCcceecCCCCeeeeeEEEECCHHHh-CCcEEEEEEEecCCCCCCceeEEEEECCCC
Confidence 3568999999987765543 3356555555678999999999876665 467899999998765566789999999977
No 66
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=96.29 E-value=0.017 Score=55.49 Aligned_cols=92 Identities=16% Similarity=0.059 Sum_probs=62.1
Q ss_pred cccceEEEEEEEECCeeeecc-eecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 54 VCADLVVFCQIFSDGVPLSLP-ISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 54 ~~~~l~V~~ql~~g~~~L~~p-v~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
+.+|-||.+.|.....+-... .+|..+.-+-++.|||.++|++.-.+.+..+.|.|+|||....++..+||.+.++|=+
T Consensus 18 g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~ 97 (120)
T cd08395 18 GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRD 97 (120)
T ss_pred CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHH
Confidence 346889999987322222111 2455554444688999999999877788899999999997544455689999999743
Q ss_pred cCCcccccceeeEeccCC
Q psy10441 133 KYGVFRQGMMDLKVWPNQ 150 (867)
Q Consensus 133 ~~~~Lr~G~~~L~lwp~~ 150 (867)
-. .+| ...+|..-
T Consensus 98 ~~---~~~--~~~~w~~L 110 (120)
T cd08395 98 IA---QAG--SCACWLPL 110 (120)
T ss_pred Cc---CCC--cEEEEEEC
Confidence 22 333 24567643
No 67
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=96.24 E-value=0.048 Score=51.99 Aligned_cols=75 Identities=11% Similarity=-0.009 Sum_probs=56.5
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCC-CceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGAT-QLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~-~~~~vG~t~i~LFd 132 (867)
.++-||.+.|..+.+... ..+|+.+.-+.++.|||-+.|++.-.++.. .|.|+||+..... +...+|++.++|=+
T Consensus 31 ~~dpYVkv~l~p~~~~~~-~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~--~l~v~V~~~~~~~~~~~~lG~~~i~l~~ 106 (119)
T cd08685 31 TCNSYVKISLSPDKEVRF-RQKTSTVPDSANPLFHETFSFDVNERDYQK--RLLVTVWNKLSKSRDSGLLGCMSFGVKS 106 (119)
T ss_pred CCCeeEEEEEEeCCCCcc-eEeCccccCCCCCccccEEEEEcChHHhCC--EEEEEEECCCCCcCCCEEEEEEEecHHH
Confidence 467899999988765433 235666655667899999999998777643 6889999976543 35799999999843
No 68
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=96.20 E-value=0.054 Score=52.59 Aligned_cols=77 Identities=17% Similarity=0.111 Sum_probs=59.5
Q ss_pred cccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 54 VCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 54 ~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
+.+|-||++.+..+++.+. ..+|..+.-+.++.|||-+.|++.-.++ .+..|.|+|||...-++...||.+.+++..
T Consensus 34 g~~Dpyv~v~l~~~~~~~~-~~kT~v~k~t~nP~w~e~F~f~v~~~~~-~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 34 GLADPYVKVNLYYGKKRIS-KKKTHVKKCTLNPVFNESFVFDIPSEEL-EDISVEFLVLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCCeEEEEEEEcCCceee-eEcCccccCCCCCccCceEEEECCHHHh-CCCEEEEEEEECCCCCCCccEEEEEECCcC
Confidence 3568899999988776653 3456555445568899999999877676 567899999998765667799999998876
No 69
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=96.13 E-value=0.081 Score=51.04 Aligned_cols=88 Identities=16% Similarity=0.093 Sum_probs=61.0
Q ss_pred cccceEEEEEEEECCeeeecceecccccCCCCccccceEEe-ccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 54 VCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITI-PLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 54 ~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~f-pI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
+.++-||.+.+..+.+.. .+|..+.-+.++.|||.+.| .+...++.. ..|.|+||+...-++...+|.+.++|=+
T Consensus 36 ~~~DpyV~v~l~~~~~~~---~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~-~~L~~~V~d~d~~~~d~~lG~~~i~L~~ 111 (128)
T cd08388 36 GTSDPYVKLQLLPEKEHK---VKTRVLRKTRNPVYDETFTFYGIPYNQLQD-LSLHFAVLSFDRYSRDDVIGEVVCPLAG 111 (128)
T ss_pred CCcCCEEEEEEeCCcCce---eeccEEcCCCCCceeeEEEEcccCHHHhCC-CEEEEEEEEcCCCCCCceeEEEEEeccc
Confidence 345789999987554322 35655544567889999999 576666665 4699999997655566799999999954
Q ss_pred cCCcccccceeeEecc
Q psy10441 133 KYGVFRQGMMDLKVWP 148 (867)
Q Consensus 133 ~~~~Lr~G~~~L~lwp 148 (867)
-. + .|...+.+|.
T Consensus 112 l~--~-~~~~~~~~~~ 124 (128)
T cd08388 112 AD--L-LNEGELLVSR 124 (128)
T ss_pred cC--C-CCCceEEEEE
Confidence 22 2 2333477885
No 70
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=96.09 E-value=0.034 Score=54.47 Aligned_cols=76 Identities=20% Similarity=0.127 Sum_probs=59.2
Q ss_pred cccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEce
Q psy10441 54 VCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLF 131 (867)
Q Consensus 54 ~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LF 131 (867)
+.+|-||.+.|..+++.... ..|+-+--+.++.|||-+.|+|.-.+|+ ++.|.|+||+...-++..+||.+.+...
T Consensus 34 g~~DpyVkv~l~~~~~~~~k-~kT~v~k~t~nP~~nE~f~F~v~~~~l~-~~~l~~~V~~~d~~~~~~~iG~v~lg~~ 109 (136)
T cd08406 34 TTADPFVKVYLLQDGRKISK-KKTSVKRDDTNPIFNEAMIFSVPAIVLQ-DLSLRVTVAESTEDGKTPNVGHVIIGPA 109 (136)
T ss_pred CCCCeEEEEEEEeCCccccc-cCCccccCCCCCeeceeEEEECCHHHhC-CcEEEEEEEeCCCCCCCCeeEEEEECCC
Confidence 45788999999998887643 3565554556788999999998776654 5789999999876666778999988665
No 71
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=95.97 E-value=0.024 Score=56.31 Aligned_cols=73 Identities=11% Similarity=0.076 Sum_probs=56.2
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEE-ecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYD-CGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~-~~~~~~~~~vG~t~i~LFd 132 (867)
.+|=||.+.|..+++... -..|..+.-+.++.|||-++|+|. +.+..|.|+||+ ...-++...+|.+.++|=+
T Consensus 50 ~sDPYVKv~Llp~~~~~~-k~KT~v~kktlnPvfNE~F~f~v~----l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~ 123 (146)
T cd04028 50 LPAPYVKVYLLEGKKCIA-KKKTKIARKTLDPLYQQQLVFDVS----PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDD 123 (146)
T ss_pred CcCCeEEEEEECCCcccc-ceeceecCCCCCCccCCeEEEEEc----CCCCEEEEEEEeCCCCCCCCceEEEEEEEccc
Confidence 467799999998877654 246666665667889999999987 578899999995 4333455689999999933
No 72
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=95.92 E-value=0.051 Score=51.63 Aligned_cols=74 Identities=22% Similarity=0.241 Sum_probs=55.2
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||.+.+..+++. ..+|..+.-+.++.|||.++|++...+|. +..|.|+|||...-++...+|.+.++|=+
T Consensus 36 ~~dpyv~v~l~~~~~~---~~kT~v~~~t~nP~wne~f~f~i~~~~l~-~~~l~~~V~d~d~~~~~~~lG~~~i~l~~ 109 (124)
T cd08385 36 TSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFTFKVPYSELG-NKTLVFSVYDFDRFSKHDLIGEVRVPLLT 109 (124)
T ss_pred CCCCEEEEEEEcCCCC---ceecccCcCCCCCceeeeEEEeCCHHHhC-CCEEEEEEEeCCCCCCCceeEEEEEecCc
Confidence 4578999888654432 34666665566799999999998766654 46899999997655556789999999954
No 73
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=95.88 E-value=0.1 Score=49.58 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=55.7
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||++.+..++... -+|..+.-+..+.|||.+.|++...+|+ +..|.|+|||...-++...+|.+.++|=+
T Consensus 36 ~~dpyv~v~l~~~~~~~---~kT~v~~~t~~P~wne~f~f~v~~~~l~-~~~l~i~V~d~~~~~~~~~iG~~~i~l~~ 109 (124)
T cd08387 36 TADPYCKVRLLPDRSNT---KQSKIHKKTLNPEFDESFVFEVPPQELP-KRTLEVLLYDFDQFSRDECIGVVELPLAE 109 (124)
T ss_pred CCCCeEEEEEecCCCCc---EeCceEcCCCCCCcccEEEEeCCHHHhC-CCEEEEEEEECCCCCCCceeEEEEEeccc
Confidence 35779998886555432 3566555566788999999998887764 56799999998655566789999998854
No 74
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=95.85 E-value=0.083 Score=50.91 Aligned_cols=74 Identities=23% Similarity=0.171 Sum_probs=55.7
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEc
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISL 130 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~L 130 (867)
.++-||.+.+..++.... ...|..+.-+.++.|||.+.|++.-.+++ ...|.|+|||....++...+|.+.+++
T Consensus 33 ~~DpyV~v~l~~~~~~~~-~~kT~v~~~t~nP~wne~f~f~~~~~~l~-~~~l~~~V~d~d~~~~~~~lG~~~i~l 106 (133)
T cd08384 33 YSDPFVKLYLKPDAGKKS-KHKTQVKKKTLNPEFNEEFFYDIKHSDLA-KKTLEITVWDKDIGKSNDYIGGLQLGI 106 (133)
T ss_pred CCCcEEEEEEEcCCCccC-CceeeeEeccCCCCcccEEEEECCHHHhC-CCEEEEEEEeCCCCCCccEEEEEEEec
Confidence 457799999876543322 24566666666789999999998877764 668999999976555567899999988
No 75
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=95.84 E-value=0.026 Score=55.31 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=59.5
Q ss_pred cccceEEEEEEEEC-CeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 54 VCADLVVFCQIFSD-GVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 54 ~~~~l~V~~ql~~g-~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
+.+|.||.+++..+ ++.++. ..|+-+.-+.++.|||-+.|+|.-.+| .+..|.|+||+...-++...+|.+.+++..
T Consensus 34 ~~~dpyVkv~llp~~~~~~~~-~kT~v~~~t~nPvfnEtF~f~i~~~~l-~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~ 111 (138)
T cd08408 34 KAPDTYVKLTLLNSDGQEISK-SKTSIRRGQPDPEFKETFVFQVALFQL-SEVTLMFSVYNKRKMKRKEMIGWFSLGLNS 111 (138)
T ss_pred CCCCeeEEEEEEeCCCcceee-ccceeecCCCCCcEeeeEEEECCHHHh-CccEEEEEEEECCCCCCCcEEEEEEECCcC
Confidence 35689999999874 555543 467666656679999999999987775 456799999998766667789998887763
No 76
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=95.74 E-value=0.1 Score=45.03 Aligned_cols=67 Identities=22% Similarity=0.184 Sum_probs=51.6
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEE
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTC 127 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~ 127 (867)
.++.||++.+-..+. .-..|..+.-+..+.|||-+.|++...++.. |.|.||+....++...||.+.
T Consensus 19 ~~~~yv~v~~~~~~~---~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~---l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 19 KPDPYVRVSVNGSES---TKYKTKVKKNTSNPVWNEEFEFPLDDPDLDS---LSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp SBEEEEEEEEETTTC---EEEEECCBSSBSSEEEEEEEEEEESHGCGTE---EEEEEEEETSSSSEEEEEEEE
T ss_pred cccccceeecceeee---eeeeeeeeeccccceeeeeeeeeeecccccc---eEEEEEECCCCCCCCEEEEEC
Confidence 568899998876555 2256777777778999999999976666655 999999988766677888763
No 77
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=95.71 E-value=0.067 Score=50.08 Aligned_cols=75 Identities=19% Similarity=0.125 Sum_probs=56.2
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||.+.+-..++.. .+|..+.-+..+.|||.+.|++...++-.++.|.|+|||...-++...+|.+.++|=+
T Consensus 22 ~~Dpyv~v~~~~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~ 96 (111)
T cd04041 22 SSDPYVTASFAKFGKPL---YSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKE 96 (111)
T ss_pred CCCccEEEEEccCCCcc---EeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHH
Confidence 35678888775544332 3566666666799999999998877776778999999997655555789999988843
No 78
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=95.68 E-value=0.11 Score=50.24 Aligned_cols=76 Identities=18% Similarity=0.123 Sum_probs=56.5
Q ss_pred cccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEce
Q psy10441 54 VCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLF 131 (867)
Q Consensus 54 ~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LF 131 (867)
+.++-||++.+..+|+... .-+|..+.-+.++.|||-+.|++.-.++. +..|.|+|||....++...||.+.+++.
T Consensus 33 g~~dpyvkv~l~~~~~~~~-~~kT~v~~~t~nP~wne~f~f~i~~~~~~-~~~l~~~v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 33 GFSDPYVKVSLMCEGRRLK-KKKTSVKKNTLNPTYNEALVFDVPPENVD-NVSLIIAVVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred CCCCceEEEEEEeCCcccc-eecCCcccCCCCCcccceEEEECCHHHhC-CCEEEEEEEECCCCCCCceeEEEEECCC
Confidence 3568899999987776542 23555544455788999999998766664 3568999999876666778999999876
No 79
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=95.60 E-value=0.064 Score=55.11 Aligned_cols=64 Identities=25% Similarity=0.357 Sum_probs=45.4
Q ss_pred CCccccceEEeccccCCcCccceEEEEEEEecCCCC---ceeEEEEEEEceecCCc-ccccceeeEeccC
Q psy10441 84 NRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQ---LIPIGGTCISLFGKYGV-FRQGMMDLKVWPN 149 (867)
Q Consensus 84 ~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~---~~~vG~t~i~LFd~~~~-Lr~G~~~L~lwp~ 149 (867)
..+.|+|.|++.+. .+|..++-|.||++.++...+ ..++|.+-++|++ +|+ +..|.+.|.++..
T Consensus 70 k~P~f~deiKi~LP-~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~-~g~~i~dg~~~L~v~~~ 137 (184)
T PF14429_consen 70 KNPQFNDEIKIQLP-PDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD-NGTIIQDGEHELPVYKY 137 (184)
T ss_dssp SS-EEEEEEEEEE--CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB--TS-B--SEEEEEEEEE-
T ss_pred CCCCccEEEEEEcC-chhcccEEEEEEEEeeccccccCccceeEEEEEEeee-CCeEecCCCEEEEEEEc
Confidence 56889999998776 467889999999999876432 1799999999999 777 8999999999853
No 80
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=95.59 E-value=0.091 Score=50.23 Aligned_cols=71 Identities=24% Similarity=0.100 Sum_probs=51.0
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccC--CcCccceEEEEEEEecCCCCceeEEEEEEEce
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFS--DLPRNAILALTIYDCGGATQLIPIGGTCISLF 131 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~--dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LF 131 (867)
.++-||++.+ +++. .+|..+.-+.++.|||.+.|.+.-. +-+.+..|.|+|||...-++...+|.+.++|=
T Consensus 19 ~~dpYv~v~l--~~~~----~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~ 91 (126)
T cd08682 19 TNDAYVIIQL--GKEK----YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLN 91 (126)
T ss_pred CCCceEEEEE--CCee----eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHH
Confidence 4577888886 4332 3555554456788999999987542 23667889999999765455678999999983
No 81
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=95.53 E-value=0.044 Score=51.20 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=52.6
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccc-cceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDW-NEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~W-newl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||++.+ ++ ...+|+.+.-+.++.| ||.++|++.-.+| .+..|.|+|||...-++...+|.+.++|=+
T Consensus 20 ~~Dpyv~v~~--~~----~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l-~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~ 91 (110)
T cd08688 20 LTDAFVEVKF--GS----TTYKTDVVKKSLNPVWNSEWFRFEVDDEEL-QDEPLQIRVMDHDTYSANDAIGKVYIDLNP 91 (110)
T ss_pred CCCceEEEEE--CC----eeEecceecCCCCCcccCcEEEEEcChHHc-CCCeEEEEEEeCCCCCCCCceEEEEEeHHH
Confidence 4577888876 44 2345655554557889 9999999877775 367899999997655566789999988854
No 82
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=95.53 E-value=0.15 Score=48.43 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=56.6
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCC--CCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGA--TQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~--~~~~~vG~t~i~LFd 132 (867)
.++-||++.+..++.... .-+|..+.-+.++.|||-+.|++.-.+|. +..|.|+||+...- ++...+|.+.++|=+
T Consensus 36 ~~dpyv~v~l~~~~~~~~-~~kT~v~~~~~nP~wne~f~f~i~~~~l~-~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~ 113 (127)
T cd04030 36 IPDPYVRLYLLPDKSKST-RRKTSVKKDNLNPVFDETFEFPVSLEELK-RRTLDVAVKNSKSFLSREKKLLGQVLIDLSD 113 (127)
T ss_pred CCCceEEEEEEcCCCCCc-eEecccccCCCCCEECeEEEEecCHHHhc-CCEEEEEEEECCcccCCCCceEEEEEEeccc
Confidence 467899999877654332 23566555556789999999998777664 56899999997542 456789999999966
No 83
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=95.51 E-value=0.14 Score=58.55 Aligned_cols=134 Identities=19% Similarity=0.285 Sum_probs=97.8
Q ss_pred EEEEeeCceeeecCCCcceEEEEEecCCCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcc
Q psy10441 581 IKGIIPEKATLFKSNLMPSRLTFLTTTGTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHG 660 (867)
Q Consensus 581 i~~i~~~~~~v~~S~~~P~~l~f~~~dG~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~G 660 (867)
|++|.....-.-+..+.-.+|+|. +| ..+++|. -+++-|.....++..++.-... -.+.+...+|+.-+.+.|
T Consensus 45 i~~I~~~~GD~H~~Gr~V~~l~f~--~g--~kivYKP-Rsl~~d~~f~~l~~~ln~~~~~--~~~~l~~~~~l~~g~~Yg 117 (370)
T PF13575_consen 45 ITSIEFGLGDTHNGGRSVAILEFS--SG--KKIVYKP-RSLSIDKAFNDLLEWLNEKNGT--PSLDLPTPKVLDRGDGYG 117 (370)
T ss_pred ceEecCCCCCcCCCCceEEEEEEC--CC--CEEEEeC-cccHHHHHHHHHHHHHhhhccc--cccccccceeeeccCcce
Confidence 455544333334445667777774 33 4689999 7899999988888877774221 235677789999988899
Q ss_pred eeeeecCccHHHHHhhcCcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEEEE
Q psy10441 661 FVQFVDSFPVAEVLATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHI 740 (867)
Q Consensus 661 lIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lfHI 740 (867)
..|+|+..+.. +.+..++|-+-++++..+.|+||..|=|.+||.-+. +.-+=|
T Consensus 118 W~EfI~~~~c~--------------------------~~~ev~~yY~r~G~llal~y~L~~~DlH~ENIIa~g-~~PvlI 170 (370)
T PF13575_consen 118 WQEFIEHEPCN--------------------------SEEEVERYYYRLGVLLALLYLLNGTDLHFENIIASG-EYPVLI 170 (370)
T ss_pred eEEEecCCCCC--------------------------CHHHHHHHHHHHHHHHHHHHHhCCCcccccceEEeC-CCcEEE
Confidence 99999754431 124577888999999999999999999999998865 556778
Q ss_pred eeccccCC
Q psy10441 741 DFGYILGR 748 (867)
Q Consensus 741 DFG~ilg~ 748 (867)
|.-.+|..
T Consensus 171 DlETlf~~ 178 (370)
T PF13575_consen 171 DLETLFHP 178 (370)
T ss_pred ehhhhCCc
Confidence 87777654
No 84
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=95.43 E-value=0.15 Score=48.97 Aligned_cols=75 Identities=15% Similarity=0.098 Sum_probs=55.1
Q ss_pred cccceEEEEEEEECCeeeecceecccccCCCCccccceEEec-cccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 54 VCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIP-LMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 54 ~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fp-I~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
+.++.||.+.+..+.+. ..+|.-+.- .++.|||-+.|+ +.-.+|. +..|.|+||+...-++...+|.+.++|=+
T Consensus 35 ~~~d~yVk~~llp~~~~---~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~-~~~L~~~V~~~~~~~~~~~lG~~~i~L~~ 109 (124)
T cd08389 35 GASSWQVHLVLLPSKKQ---RAKTKVQRG-PNPVFNETFTFSRVEPEELN-NMALRFRLYGVERMRKERLIGEKVVPLSQ 109 (124)
T ss_pred CCCCcEEEEEEccCCcc---eeecccccC-CCCcccCEEEECCCCHHHhc-cCEEEEEEEECCCcccCceEEEEEEeccc
Confidence 34578998777655432 234544444 678899999999 7776665 67899999998765566789999999965
Q ss_pred c
Q psy10441 133 K 133 (867)
Q Consensus 133 ~ 133 (867)
-
T Consensus 110 l 110 (124)
T cd08389 110 L 110 (124)
T ss_pred c
Confidence 4
No 85
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=95.42 E-value=0.1 Score=49.43 Aligned_cols=76 Identities=16% Similarity=0.118 Sum_probs=55.1
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEecc-ccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPL-MFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI-~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||++.+..++... ...+|..+.-+.++.|||.+.|++ .-.++ .++.|.|+|||....++...+|.+.++|=+
T Consensus 36 ~~dpyv~v~l~~~~~~~-~~~kT~v~~~t~nP~wne~f~f~~~~~~~l-~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 36 LRNPYVKVYLLPDRSEK-SKRRTKTVKKTLNPEWNQTFEYSNVRRETL-KERTLEVTVWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred CCCCEEEEEEccCCCcc-ccccccccCCCCCCccccEEEEcccCHHHh-CCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence 45779999986544322 123566555566789999999984 44554 568999999997665566789999999865
No 86
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=95.36 E-value=0.048 Score=51.62 Aligned_cols=74 Identities=22% Similarity=0.261 Sum_probs=56.0
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||++.+..+++.. .+|..+.-+.++.|||.++|++.-.++. ...|.|+||+....++...+|.+.++|=+
T Consensus 35 ~~dpyV~v~l~~~~~~~---~~T~v~~~~~~P~wne~f~f~i~~~~l~-~~~l~i~v~d~~~~~~~~~iG~~~i~L~~ 108 (123)
T cd08390 35 HCDPFVKVCLLPDERRS---LQSKVKRKTQNPNFDETFVFQVSFKELQ-RRTLRLSVYDVDRFSRHCIIGHVLFPLKD 108 (123)
T ss_pred CCCcEEEEEEeeCCCCc---eEeeeEcCCCCCccceEEEEEcCHHHhc-ccEEEEEEEECCcCCCCcEEEEEEEeccc
Confidence 35678999887665433 3565555556788999999998777664 46899999998766666789999999954
No 87
>PLN02222 phosphoinositide phospholipase C 2
Probab=95.36 E-value=0.08 Score=63.30 Aligned_cols=86 Identities=20% Similarity=0.213 Sum_probs=61.7
Q ss_pred cccceEEEEEEEECCeee-ecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 54 VCADLVVFCQIFSDGVPL-SLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 54 ~~~~l~V~~ql~~g~~~L-~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
...+.||+++|+ | -|. +...+|..+.-.-.+.|||.++|+|.+ |.=|.|.|+|||....+....+|++++|+
T Consensus 477 ~~~dpyV~Vei~-G-~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~---PeLAllRf~V~d~D~~~~ddfigq~~lPv-- 549 (581)
T PLN02222 477 SPPDFYTRVGIA-G-VPGDTVMKKTKTLEDNWIPAWDEVFEFPLTV---PELALLRLEVHEYDMSEKDDFGGQTCLPV-- 549 (581)
T ss_pred CCCCeeEEEEEe-c-cCCCcceeeeEecCCCCCcccCCeeEEEEEc---CceeEEEEEEEECCCCCCCcEEEEEEcch--
Confidence 356899999996 1 121 112245444322347899999999875 55699999999964434456899999998
Q ss_pred cCCcccccceeeEecc
Q psy10441 133 KYGVFRQGMMDLKVWP 148 (867)
Q Consensus 133 ~~~~Lr~G~~~L~lwp 148 (867)
..||+|...+.|..
T Consensus 550 --~~Lr~GyR~V~L~~ 563 (581)
T PLN02222 550 --WELSQGIRAFPLHS 563 (581)
T ss_pred --hhhhCccceEEccC
Confidence 57999999998853
No 88
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=95.36 E-value=0.14 Score=48.94 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=50.4
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEce
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLF 131 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LF 131 (867)
.+|-||.+.+ +++... .+|..+.-+..+.|||.+.|++ ..|.++.|.|+|||....++...+|.+.++|=
T Consensus 20 ~~DPYv~v~~--~~~~~~--~kT~~v~~t~nP~Wne~f~f~~---~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~ 89 (124)
T cd04037 20 KSDPYLKIKL--GKKKIN--DRDNYIPNTLNPVFGKMFELEA---TLPGNSILKISVMDYDLLGSDDLIGETVIDLE 89 (124)
T ss_pred CCCcEEEEEE--CCeecc--ceeeEEECCCCCccceEEEEEe---cCCCCCEEEEEEEECCCCCCCceeEEEEEeec
Confidence 4567887776 554321 2344433355688999999986 45778999999999866556678999999884
No 89
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=95.32 E-value=0.097 Score=49.74 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=52.1
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEecc-ccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPL-MFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI-~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||++.+..++.. ..+|..+.-+..+.|||.+.|++ ...+ ..+..|.|+|||...-++...+|.+.++|=+
T Consensus 36 ~~dpyv~v~~~~~~~~---~~kT~v~~~t~~P~Wne~f~f~~~~~~~-l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~ 110 (125)
T cd08386 36 TSDPFVKIYLLPDKKH---KLETKVKRKNLNPHWNETFLFEGFPYEK-LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNK 110 (125)
T ss_pred CCCceEEEEECCCCCc---ceeeeeecCCCCCccceeEEEcccCHHH-hCCCEEEEEEEeCCCCcCCcEeeEEEEeccc
Confidence 3577888887544332 24566655566789999999984 3333 3557899999997655556789999999843
No 90
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=95.31 E-value=0.23 Score=48.00 Aligned_cols=76 Identities=16% Similarity=0.020 Sum_probs=52.5
Q ss_pred ccceEEEEEEEECCe-eeecceecccccCCCCccccceEEeccccC-CcCccceEEEEEEEecCCCCceeEEEEEEEc
Q psy10441 55 CADLVVFCQIFSDGV-PLSLPISSSYKSFTNRWDWNEWITIPLMFS-DLPRNAILALTIYDCGGATQLIPIGGTCISL 130 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~-~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~-dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~L 130 (867)
.++-||.+.+-.+++ +-....+|..+.-+.++.|||.+.|++.-. ....++.|.|+|||....++...+|.+.++|
T Consensus 36 ~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l 113 (133)
T cd04009 36 SSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPL 113 (133)
T ss_pred CCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeH
Confidence 457788888764432 112234565555455688999999997642 3356789999999986655567889988877
No 91
>PLN02952 phosphoinositide phospholipase C
Probab=95.19 E-value=0.1 Score=62.69 Aligned_cols=84 Identities=20% Similarity=0.267 Sum_probs=59.7
Q ss_pred ccceEEEEEEEECCeee-ecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEceec
Q psy10441 55 CADLVVFCQIFSDGVPL-SLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFGK 133 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L-~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd~ 133 (867)
.+|.||+++|+- -|. +...+|..+.=+-.+.|||-++|++.. |.-|.|.|.|||....+....+|++++||
T Consensus 496 ~~D~yV~V~i~G--~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~---PELAllrf~V~D~D~~~~ddfiGq~~lPv--- 567 (599)
T PLN02952 496 PPDFYTKMYIVG--VPADNAKKKTKIIEDNWYPAWNEEFSFPLTV---PELALLRIEVREYDMSEKDDFGGQTCLPV--- 567 (599)
T ss_pred CCCceEEEEEec--cCCCCcceeeeeccCCCCcccCCeeEEEEEc---CCccEEEEEEEecCCCCCCCeEEEEEcch---
Confidence 458999999882 221 112244433222247799999999885 55699999999975544556899999999
Q ss_pred CCcccccceeeEec
Q psy10441 134 YGVFRQGMMDLKVW 147 (867)
Q Consensus 134 ~~~Lr~G~~~L~lw 147 (867)
..||+|...+.|.
T Consensus 568 -~~Lr~GyR~VpL~ 580 (599)
T PLN02952 568 -SELRPGIRSVPLH 580 (599)
T ss_pred -hHhcCCceeEeCc
Confidence 5789999988774
No 92
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=95.15 E-value=0.062 Score=50.80 Aligned_cols=76 Identities=20% Similarity=0.121 Sum_probs=56.5
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||.+.+..++.... ..+|..+.-+..+.|||.+.|++.-.+|. ...|.|.||+....++...+|.+.++|=+
T Consensus 35 ~~dpyv~v~l~~~~~~~~-~~kT~v~~~t~~P~wne~f~f~i~~~~l~-~~~l~i~v~d~~~~~~~~~iG~~~i~l~~ 110 (123)
T cd08521 35 RSNPYVKVYLLPDKSKQS-KRKTSVKKNTTNPVFNETLKYHISKSQLE-TRTLQLSVWHHDRFGRNTFLGEVEIPLDS 110 (123)
T ss_pred CCCcEEEEEEecCCCcCc-eeeccccCCCCCCcccceEEEeCCHHHhC-CCEEEEEEEeCCCCcCCceeeEEEEeccc
Confidence 457799999876654332 34566555556789999999998877774 56899999997655566789999998833
No 93
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=95.07 E-value=0.1 Score=54.02 Aligned_cols=66 Identities=18% Similarity=0.328 Sum_probs=54.8
Q ss_pred CCCccccceEEeccccCCcCccceEEEEEEEecCC----CCceeEEEEEEEceecCC-cccccceeeEeccC
Q psy10441 83 TNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGA----TQLIPIGGTCISLFGKYG-VFRQGMMDLKVWPN 149 (867)
Q Consensus 83 ~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~----~~~~~vG~t~i~LFd~~~-~Lr~G~~~L~lwp~ 149 (867)
.+.+.|||-|.+.|.+.+. ..+-|.|+++.++.. ....|+|-+=++|...+| .|+.|.+.|.||..
T Consensus 63 ~~~P~W~EtIKl~lP~~~~-~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~~~gt~l~dG~H~L~vYK~ 133 (196)
T cd08694 63 VDKPKWFETFKVAIPIEDF-KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQENGTTLTDGEHDLIVYKV 133 (196)
T ss_pred cCCCCCceeEEEecChhhC-CCeEEEEEEEeeccccccCCCCCceEEEEEeeeccCCcEEccCCEEEEEEEe
Confidence 4568899999999988776 678999999988743 224689999999997766 89999999999964
No 94
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=95.06 E-value=0.13 Score=52.68 Aligned_cols=73 Identities=25% Similarity=0.357 Sum_probs=56.6
Q ss_pred cccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCC-----CceeEEEEEEEceecCC-cccccceeeEeccCC
Q psy10441 77 SSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGAT-----QLIPIGGTCISLFGKYG-VFRQGMMDLKVWPNQ 150 (867)
Q Consensus 77 T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~-----~~~~vG~t~i~LFd~~~-~Lr~G~~~L~lwp~~ 150 (867)
|+.......+.|+|-|++.+. .++..++-|.|++|++.... ...++|.+-+||++++| .++.|.+.|.++...
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP-~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~~~g~~i~dg~~~L~v~k~~ 134 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLP-ADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMDKDGAFIKDGDHTLPVYKYD 134 (178)
T ss_pred EEEEEcCCCCCCceeEEEecC-CccCCCeEEEEEEEccccccccCCCccceEEEEEEeccccCCcEEcCCCEEEEEEecC
Confidence 334444457889999998774 35557899999999988443 36799999999999555 578899999998754
No 95
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=95.03 E-value=0.079 Score=49.99 Aligned_cols=70 Identities=24% Similarity=0.153 Sum_probs=51.9
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||.+.+-.+ ....+|..+.-+..+.|||.+.|++. +.+..|.|+|||....++...+|.+.++|=+
T Consensus 23 ~~dpyv~v~~~~~----~~~~kT~~~~~~~~P~Wne~~~~~v~----~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~ 92 (124)
T cd04044 23 TVDPYVTFSISNR----RELARTKVKKDTSNPVWNETKYILVN----SLTEPLNLTVYDFNDKRKDKLIGTAEFDLSS 92 (124)
T ss_pred CCCCeEEEEECCC----CcceEeeeecCCCCCcceEEEEEEeC----CCCCEEEEEEEecCCCCCCceeEEEEEEHHH
Confidence 3567888877432 22345555555667999999999876 5678999999998766566789999999754
No 96
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=94.99 E-value=0.11 Score=50.44 Aligned_cols=69 Identities=14% Similarity=0.080 Sum_probs=51.0
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEce
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLF 131 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LF 131 (867)
.++-||++.+ +|+ ..+|..+.-+..+.|||-+.|++ ..++....|.|+|||....++...||.+.++|=
T Consensus 47 ~~DPYVkV~~--~~~----~~kT~vi~~t~nPvWNE~F~f~~--~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~ 115 (127)
T cd04032 47 STDGYVKVFF--GGQ----EKRTEVIWNNNNPRWNATFDFGS--VELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPE 115 (127)
T ss_pred CCCeEEEEEE--CCc----cccCceecCCCCCcCCCEEEEec--ccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEec
Confidence 4577888865 555 34565555455788999999974 344678899999999876666778999988874
No 97
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=94.91 E-value=0.11 Score=48.59 Aligned_cols=69 Identities=13% Similarity=0.084 Sum_probs=50.4
Q ss_pred cceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 56 ADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 56 ~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
+|=||++.+ +++. .+|..+.-+.++.|||.+.|++. +...+..|.|.|||....+....||.+.++|=.
T Consensus 26 ~DPYv~v~~--~~~~----~kT~v~~~t~nPvWne~f~f~v~--~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~ 94 (108)
T cd04039 26 MDPFVIISF--GRRV----FRTSWRRHTLNPVFNERLAFEVY--PHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQE 94 (108)
T ss_pred cCceEEEEE--CCEe----EeeeeecCCCCCcccceEEEEEe--CccCCCEEEEEEEECCCCCCCcceEEEEEEHHH
Confidence 456887775 4432 25666655667899999999875 333457899999998766667789999999853
No 98
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=94.90 E-value=0.18 Score=47.63 Aligned_cols=70 Identities=14% Similarity=0.035 Sum_probs=49.6
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEce
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLF 131 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LF 131 (867)
.++-||++.+..++ ....+|..+.-+.++.|||.+.|++.-. ..+.|.|+|||.... +...+|.+.++|=
T Consensus 20 ~~Dpyv~v~~~~~~---~~~~kT~vv~~t~nP~Wne~f~f~i~~~---~~~~l~v~v~d~d~~-~~~~iG~~~~~l~ 89 (119)
T cd04036 20 TPDCYVELWLPTAS---DEKKRTKTIKNSINPVWNETFEFRIQSQ---VKNVLELTVMDEDYV-MDDHLGTVLFDVS 89 (119)
T ss_pred CCCcEEEEEEcCCC---CccCccceecCCCCCccceEEEEEeCcc---cCCEEEEEEEECCCC-CCcccEEEEEEHH
Confidence 45778888874222 1234566555556789999999987532 456799999997654 5568999999993
No 99
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=94.85 E-value=0.25 Score=47.08 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=49.0
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||.+.+ +++.. .+|..+.-+.++.|||.+.|++.- .+..|.|+|||....+....||.+.++|=+
T Consensus 21 ~~DPYv~v~~--~~~~~---~kT~~~~~t~~P~Wne~f~~~v~~----~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~ 89 (120)
T cd04045 21 KIDPYVRVLV--NGIVK---GRTVTISNTLNPVWDEVLYVPVTS----PNQKITLEVMDYEKVGKDRSLGSVEINVSD 89 (120)
T ss_pred CcCCEEEEEE--CCEEe---eceeEECCCcCCccCceEEEEecC----CCCEEEEEEEECCCCCCCCeeeEEEEeHHH
Confidence 4566888876 45433 244444445678999999998753 246999999997665556789999999643
No 100
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=94.82 E-value=0.28 Score=48.79 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=50.5
Q ss_pred cccceEEEEEEEECCeeeecceecccccC-CCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 54 VCADLVVFCQIFSDGVPLSLPISSSYKSF-TNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 54 ~~~~l~V~~ql~~g~~~L~~pv~T~~~~f-~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
+.++-||.+.+ |++.. +|....- +.++.|||.++|++. + |.++.|+|+|||....++...+|.+.++|=+
T Consensus 19 g~sDPYV~v~l--~~~~~----kTk~~~~~t~nP~WNE~F~f~v~--~-~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~ 89 (150)
T cd04019 19 RVPEVFVKAQL--GNQVL----RTRPSQTRNGNPSWNEELMFVAA--E-PFEDHLILSVEDRVGPNKDEPLGRAVIPLND 89 (150)
T ss_pred CCCCeEEEEEE--CCEEe----eeEeccCCCCCCcccCcEEEEec--C-ccCCeEEEEEEEecCCCCCCeEEEEEEEHHH
Confidence 35678998887 44332 3333322 356889999999873 2 5668999999997765556789999999865
No 101
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=94.79 E-value=0.13 Score=48.77 Aligned_cols=84 Identities=21% Similarity=0.277 Sum_probs=57.3
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCC-CccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEceec
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTN-RWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFGK 133 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~-~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd~ 133 (867)
..+-||++.+...+..-.....|....-+. ++.|||-++|++. .|..+.|.|+|||.... +...+|++.++|
T Consensus 24 ~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~---~~~~~~l~~~V~d~~~~-~~~~iG~~~~~l--- 96 (128)
T cd00275 24 IVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVT---VPELAFLRFVVYDEDSG-DDDFLGQACLPL--- 96 (128)
T ss_pred ccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEe---CCCeEEEEEEEEeCCCC-CCcEeEEEEEEh---
Confidence 458899999876542111123454444333 7889999999988 45567899999997765 567899999988
Q ss_pred CCcccccceeeEe
Q psy10441 134 YGVFRQGMMDLKV 146 (867)
Q Consensus 134 ~~~Lr~G~~~L~l 146 (867)
..|..|...+.+
T Consensus 97 -~~l~~g~~~~~l 108 (128)
T cd00275 97 -DSLRQGYRHVPL 108 (128)
T ss_pred -HHhcCceEEEEe
Confidence 345566655443
No 102
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=94.71 E-value=0.27 Score=42.73 Aligned_cols=72 Identities=17% Similarity=0.118 Sum_probs=53.6
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEceecC
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFGKY 134 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd~~ 134 (867)
..+.||++.+.. ....+|....-+..+.|||.+.|++.-. ....|.|.+|+....++...+|.+.+++.+-.
T Consensus 19 ~~~~~v~v~~~~-----~~~~~T~~~~~~~~P~w~~~~~~~~~~~---~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 19 KSDPYVKVSLGG-----KQKFKTKVVKNTLNPVWNETFEFPVLDP---ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELL 90 (102)
T ss_pred CCCcEEEEEecc-----CceEecceeCCCCCCcccceEEEEccCC---CCCEEEEEEEecCCCCCCceeEEEEEeHHHhh
Confidence 567888888875 1223454444445688999999987765 67889999999877665679999999987744
No 103
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.68 E-value=0.14 Score=51.14 Aligned_cols=70 Identities=27% Similarity=0.295 Sum_probs=53.4
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.+|-||++.+ +|+. ++|+.+.-+.++.|||-+.||+...++ +..|.|+|||....++...||.+.++|-+
T Consensus 34 ~~DPYV~V~~--~g~~----~kT~v~~~t~nPvWNE~f~f~v~~p~~--~~~l~~~v~D~d~~~~dd~iG~~~l~l~~ 103 (151)
T cd04018 34 LVDPYVEVSF--AGQK----VKTSVKKNSYNPEWNEQIVFPEMFPPL--CERIKIQIRDWDRVGNDDVIGTHFIDLSK 103 (151)
T ss_pred CcCcEEEEEE--CCEe----eecceEcCCCCCCcceEEEEEeeCCCc--CCEEEEEEEECCCCCCCCEEEEEEEeHHH
Confidence 4577998874 5554 466666556679999999999876543 46899999997765566789999999865
No 104
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=94.67 E-value=0.31 Score=46.14 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=47.5
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEce
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLF 131 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LF 131 (867)
.+|-||.+.+ +++... +|....-+.++.|||.+.|++. ++ +..|.|+|||....++...+|.+.++|=
T Consensus 20 ~~Dpyv~v~~--~~~~~~---kT~~~~~t~nP~Wne~f~f~v~--~~--~~~l~~~v~D~d~~~~~~~iG~~~~~l~ 87 (121)
T cd04042 20 TSDPYVKFKY--GGKTVY---KSKTIYKNLNPVWDEKFTLPIE--DV--TQPLYIKVFDYDRGLTDDFMGSAFVDLS 87 (121)
T ss_pred CCCCeEEEEE--CCEEEE---EeeeccCCCCCccceeEEEEec--CC--CCeEEEEEEeCCCCCCCcceEEEEEEHH
Confidence 3466777764 554332 3333333456889999999874 32 5789999999876556678999999983
No 105
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.63 E-value=0.26 Score=45.60 Aligned_cols=67 Identities=21% Similarity=0.134 Sum_probs=49.3
Q ss_pred cccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 54 VCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 54 ~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
..++-||.+++ |++ ...|+.+.-+..+.|||.+.|++.- |....|.|+|||... ...+|.+.++|=+
T Consensus 19 ~~~dpyv~v~~--~~~----~~kT~v~~~t~nP~Wne~f~f~v~~---~~~~~l~v~v~d~~~---~~~iG~~~i~l~~ 85 (105)
T cd04050 19 KEPSPYVELTV--GKT----TQKSKVKERTNNPVWEEGFTFLVRN---PENQELEIEVKDDKT---GKSLGSLTLPLSE 85 (105)
T ss_pred CCCCcEEEEEE--CCE----EEeCccccCCCCCcccceEEEEeCC---CCCCEEEEEEEECCC---CCccEEEEEEHHH
Confidence 35678888877 443 3355555445678999999999853 567799999999654 3579999999854
No 106
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=94.59 E-value=0.29 Score=46.66 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=48.1
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCC--ceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQ--LIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~--~~~vG~t~i~LFd 132 (867)
.++-||.+.+ +|.. ..+|....-+.++.|||.++|++.. +..|.|+|||....++ ...+|.+.+++=+
T Consensus 20 ~~dpyv~v~~--~~~~---~~kT~v~~~t~nP~Wne~f~~~~~~-----~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~ 89 (123)
T cd08382 20 LPDPFAVITV--DGGQ---THSTDVAKKTLDPKWNEHFDLTVGP-----SSIITIQVFDQKKFKKKDQGFLGCVRIRANA 89 (123)
T ss_pred CCCcEEEEEE--CCcc---ceEccEEcCCCCCcccceEEEEeCC-----CCEEEEEEEECCCCCCCCCceEeEEEEEHHH
Confidence 4566877775 4422 2355554445578999999999853 6799999999764432 4689999998865
No 107
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=94.37 E-value=0.42 Score=46.67 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=50.2
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.+|-||.+.+ |++. .+|..+.-+.++.|||.++|++. + +.+..|.|.|||....++...+|.++++|=+
T Consensus 35 ~~DPYv~v~~--~~~~----~kT~vi~~t~nP~Wne~f~f~v~--~-~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~ 103 (136)
T cd08375 35 KSDPYCEVSM--GSQE----HKTKVVSDTLNPKWNSSMQFFVK--D-LEQDVLCITVFDRDFFSPDDFLGRTEIRVAD 103 (136)
T ss_pred CcCcEEEEEE--CCEe----eeccccCCCCCCccCceEEEEec--C-ccCCEEEEEEEECCCCCCCCeeEEEEEEHHH
Confidence 4566877765 5443 35555555567899999999874 3 4468999999997655556789999999954
No 108
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=94.34 E-value=0.47 Score=44.40 Aligned_cols=69 Identities=22% Similarity=0.171 Sum_probs=49.9
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||.+.+ +++. .+|..+.-+..+.|||.+.|++.- +.+..|.|+|||....++...+|.+.++|=+
T Consensus 20 ~~dPyv~v~~--~~~~----~kT~v~~~t~nP~Wne~f~f~~~~---~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~ 88 (116)
T cd08376 20 LSDPYVKFRL--GNEK----YKSKVCSKTLNPQWLEQFDLHLFD---DQSQILEIEVWDKDTGKKDEFIGRCEIDLSA 88 (116)
T ss_pred CCCcEEEEEE--CCEe----EecccccCCCCCceeEEEEEEecC---CCCCEEEEEEEECCCCCCCCeEEEEEEeHHH
Confidence 3466777775 4432 345554445678899999998752 2478999999998765667899999999843
No 109
>PLN02230 phosphoinositide phospholipase C 4
Probab=94.30 E-value=0.19 Score=60.40 Aligned_cols=85 Identities=21% Similarity=0.267 Sum_probs=61.0
Q ss_pred ccceEEEEEEEECCeee-ecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEceec
Q psy10441 55 CADLVVFCQIFSDGVPL-SLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFGK 133 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L-~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd~ 133 (867)
.++.||+++|+- -|- +...+|..+.=+-.+.|||-++||+.+ |-=|.|.|.|||....++...+|++++|+
T Consensus 495 ~~DpyV~Vei~G--vp~D~~~~kT~v~~n~~nP~Wneef~F~l~v---PELAllRf~V~d~d~~~~ddfiGQ~~lPv--- 566 (598)
T PLN02230 495 PPDFFVRVGIAG--APVDEVMEKTKIEYDTWTPIWNKEFIFPLAV---PELALLRVEVHEHDINEKDDFGGQTCLPV--- 566 (598)
T ss_pred CCCceEEEEEEE--CCCCCcccceeccCCCCCCccCCeeEEEEEc---CceeEEEEEEEECCCCCCCCEEEEEEcch---
Confidence 468999999983 221 111234311111247799999999874 77799999999975545566899999999
Q ss_pred CCcccccceeeEecc
Q psy10441 134 YGVFRQGMMDLKVWP 148 (867)
Q Consensus 134 ~~~Lr~G~~~L~lwp 148 (867)
..||+|...+.|..
T Consensus 567 -~~Lr~GyR~V~L~~ 580 (598)
T PLN02230 567 -SEIRQGIHAVPLFN 580 (598)
T ss_pred -HHhhCccceEeccC
Confidence 57999999998853
No 110
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=94.27 E-value=0.29 Score=46.52 Aligned_cols=73 Identities=19% Similarity=0.088 Sum_probs=50.2
Q ss_pred ccceEEEEEEEECCeeeecceeccccc-CCCCccccceEEeccccCCc-CccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKS-FTNRWDWNEWITIPLMFSDL-PRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~-f~~~~~Wnewl~fpI~~~dL-Pr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
..+-||++.+. + .....|.... -+..+.|||.+.|++.-..| ...+.|.|.|||...-++...+|++.++|=+
T Consensus 20 ~~dpYv~v~~~--~---~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 94 (125)
T cd04051 20 KMKVYAVVWID--P---SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKD 94 (125)
T ss_pred CCceEEEEEEC--C---CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHH
Confidence 45778887764 2 1123443322 24568899999998865544 4578999999997653456789999999855
No 111
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.15 E-value=0.39 Score=46.11 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=50.8
Q ss_pred ccceEEEEEEEEC--CeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSD--GVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g--~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||.+.+... ++... ..+|..+.-+..+.|||.+.|++. |.+..|.|+|||....++...+|.+.+++=+
T Consensus 20 ~~Dpyv~v~~~~~~~~~~~~-~~kT~v~~~t~nP~Wne~f~f~~~----~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 94 (133)
T cd04033 20 ASDPYVKISLYDPDGNGEID-SVQTKTIKKTLNPKWNEEFFFRVN----PREHRLLFEVFDENRLTRDDFLGQVEVPLNN 94 (133)
T ss_pred CcCcEEEEEEECCCCCCccc-ceeeeEEcCCCCCcEeeEEEEEEc----CCCCEEEEEEEECCCCCCCCeeEEEEEEHHH
Confidence 4567888888643 22222 235554444556889999999874 3357899999997655566789999998744
No 112
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=94.07 E-value=0.37 Score=45.67 Aligned_cols=73 Identities=19% Similarity=0.144 Sum_probs=51.6
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEec-cccCCcCccceEEEEEEEecCCCCceeEEEEEEEc
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIP-LMFSDLPRNAILALTIYDCGGATQLIPIGGTCISL 130 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fp-I~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~L 130 (867)
.++.||++.+..++.... ..+|..+.-+.++.|||.+.|+ +.-.++ .+..|.|+|||.... +...+|.+.++|
T Consensus 35 ~~dpyv~v~~~~~~~~~~-~~rT~v~~~~~~P~Wne~f~f~~~~~~~~-~~~~l~~~v~d~~~~-~~~~iG~~~i~l 108 (123)
T cd04035 35 LSDPYVKLNLLPGASKAT-KLRTKTVHKTRNPEFNETLTYYGITEEDI-QRKTLRLLVLDEDRF-GNDFLGETRIPL 108 (123)
T ss_pred CCCceEEEEEecCCCCCC-ceeeeeecCCCCCCccceEEEcCCCHHHh-CCCEEEEEEEEcCCc-CCeeEEEEEEEc
Confidence 468899999866554322 3466666555678999999996 332332 245899999997655 557899999988
No 113
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=94.06 E-value=0.14 Score=48.90 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=48.6
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCC-CceeEEEEEEEc
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGAT-QLIPIGGTCISL 130 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~-~~~~vG~t~i~L 130 (867)
.++-||.+.+ +++. .+|..+.-+.++.|||.+.|++.-..-..+..|.|+|||....+ +...+|.+.++|
T Consensus 20 ~~dpyv~v~~--~~~~----~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l 90 (127)
T cd04022 20 SSSAYVELDF--DGQK----KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISG 90 (127)
T ss_pred CcCcEEEEEE--CCEE----ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcH
Confidence 3566776653 4443 34555544556889999999986444344678999999965443 456899999988
No 114
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=94.04 E-value=0.24 Score=47.66 Aligned_cols=67 Identities=24% Similarity=0.188 Sum_probs=47.6
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEce
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLF 131 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LF 131 (867)
.++-||.+.+ +++... .|+.+.-+..+.|||-++|++. ..+.|.|.||+-...++...+|.+.++|=
T Consensus 34 ~~dpyv~v~~--~~~~~~---kT~~~~~t~~P~Wne~f~~~v~-----~~~~l~~~v~d~~~~~~~~~iG~~~i~l~ 100 (132)
T cd04014 34 LLDPYVSIDV--DDTHIG---KTSTKPKTNSPVWNEEFTTEVH-----NGRNLELTVFHDAAIGPDDFVANCTISFE 100 (132)
T ss_pred CcCcEEEEEE--CCEEEe---EEeEcCCCCCCCcceeEEEEcC-----CCCEEEEEEEeCCCCCCCceEEEEEEEhH
Confidence 4577888876 555432 3333333456889999999985 56899999998654344568999999974
No 115
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=94.02 E-value=0.25 Score=46.08 Aligned_cols=72 Identities=22% Similarity=0.129 Sum_probs=50.5
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCC-cCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSD-LPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~d-LPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||++.+- ++. ..|..+.-+.++.|||.+.|++.... -..++.|.|+|||....++...+|.++++|=+
T Consensus 20 ~~dpyv~v~~~--~~~----~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~ 92 (111)
T cd04011 20 NIDPVVKVEVG--GQK----KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGT 92 (111)
T ss_pred CCCCEEEEEEC--CEe----eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCcc
Confidence 34668777763 442 34555544457889999999976643 22467999999997655555789999999864
No 116
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=93.99 E-value=0.41 Score=45.75 Aligned_cols=68 Identities=22% Similarity=0.208 Sum_probs=47.3
Q ss_pred cceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEc
Q psy10441 56 ADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISL 130 (867)
Q Consensus 56 ~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~L 130 (867)
++-||++.+ ++.. .+|..+.-+..+.|||.+.|++.-.. ..+..|.|+|||....++...+|.+.++|
T Consensus 15 ~Dpyv~v~~--~~~~----~kT~v~~~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~d~~~~~~d~~iG~~~~~l 82 (127)
T cd08373 15 GDRIAKVTF--RGVK----KKTRVLENELNPVWNETFEWPLAGSP-DPDESLEIVVKDYEKVGRNRLIGSATVSL 82 (127)
T ss_pred CCCEEEEEE--CCEe----eecceeCCCcCCcccceEEEEeCCCc-CCCCEEEEEEEECCCCCCCceEEEEEEEh
Confidence 456777665 4432 35555444457889999999975433 46788999999986655556788887765
No 117
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=93.92 E-value=0.37 Score=48.54 Aligned_cols=74 Identities=23% Similarity=0.237 Sum_probs=53.0
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEecc-ccCCcCccceEEEEEEEecCCCCceeEEEEEEEc
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPL-MFSDLPRNAILALTIYDCGGATQLIPIGGTCISL 130 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI-~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~L 130 (867)
.++-||.+.+..++.... ..+|.-+.-+.++.|||.+.|++ ...+| .+..|.|+|||...-++...+|.+.+++
T Consensus 47 ~~DPYVkv~l~~~~~~~~-~~kT~vi~~t~nP~WnE~f~f~~~~~~~l-~~~~L~i~V~d~d~~~~d~~lG~v~i~l 121 (162)
T cd04020 47 TSDSFVKCYLLPDKSKKS-KQKTPVVKKSVNPVWNHTFVYDGVSPEDL-SQACLELTVWDHDKLSSNDFLGGVRLGL 121 (162)
T ss_pred CCCCEEEEEEEcCCCCCc-ceeCCccCCCCCCCCCCEEEEecCCHHHh-CCCEEEEEEEeCCCCCCCceEEEEEEeC
Confidence 457799998876543322 23555444455788999999984 45566 4578999999976555667899999887
No 118
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=93.91 E-value=0.35 Score=46.46 Aligned_cols=68 Identities=9% Similarity=0.124 Sum_probs=47.5
Q ss_pred cceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 56 ADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 56 ~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
++-||.+.+ ++.... +|..+. +..+.|||.+.|++.-.++ ..+.|.|||-...++...||.+.++|-+
T Consensus 22 ~DPYv~v~l--~~~~~~---kT~v~~-~~nP~WnE~f~f~~~~~~~---~~l~v~v~d~~~~~~d~~iG~v~i~l~~ 89 (126)
T cd08400 22 PHPYCVISL--NEVKVA---RTKVRE-GPNPVWSEEFVFDDLPPDV---NSFTISLSNKAKRSKDSEIAEVTVQLSK 89 (126)
T ss_pred CCeeEEEEE--CCEeEE---EeecCC-CCCCccCCEEEEecCCCCc---CEEEEEEEECCCCCCCCeEEEEEEEHhH
Confidence 466888887 554432 343333 4568899999998533222 4688999997655667799999999875
No 119
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=93.88 E-value=0.29 Score=46.45 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=48.5
Q ss_pred cceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 56 ADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 56 ~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
++-||.+.+ ++.. .+|..+.-+..+.|||.+.|++.-. .+..|.|+|||....++...+|.+.++|=+
T Consensus 21 ~DPyv~v~~--~~~~----~kT~v~~~t~nP~Wne~f~f~~~~~---~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (123)
T cd04025 21 SDPFVRVFY--NGQT----LETSVVKKSCYPRWNEVFEFELMEG---ADSPLSVEVWDWDLVSKNDFLGKVVFSIQT 88 (123)
T ss_pred cCceEEEEE--CCEE----EeceeecCCCCCccCcEEEEEcCCC---CCCEEEEEEEECCCCCCCcEeEEEEEEHHH
Confidence 455776664 4433 2454444455688999999997653 378899999997655566789999999843
No 120
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=93.86 E-value=0.26 Score=47.28 Aligned_cols=65 Identities=22% Similarity=0.374 Sum_probs=47.7
Q ss_pred cceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEc
Q psy10441 56 ADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISL 130 (867)
Q Consensus 56 ~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~L 130 (867)
++-||.+.+ ++++ ..+|..+.-+..+.|||.+.|++. ....|.|.|||....+....+|.+.++|
T Consensus 22 ~dPyv~v~~--~~~~---~~kT~v~~~t~~P~Wne~f~~~~~-----~~~~l~~~V~d~~~~~~~~~iG~~~i~l 86 (125)
T cd04021 22 PDPYVEVTV--DGQP---PKKTEVSKKTSNPKWNEHFTVLVT-----PQSTLEFKVWSHHTLKADVLLGEASLDL 86 (125)
T ss_pred CCeEEEEEE--CCcc---cEEeeeeCCCCCCccccEEEEEeC-----CCCEEEEEEEeCCCCCCCcEEEEEEEEH
Confidence 466777765 4552 234544444567899999999864 4578999999977656668999999997
No 121
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=93.84 E-value=0.58 Score=45.30 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=50.0
Q ss_pred cccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCC------CCceeEEEEE
Q psy10441 54 VCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGA------TQLIPIGGTC 127 (867)
Q Consensus 54 ~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~------~~~~~vG~t~ 127 (867)
+.+|-||.+.+ |++.. +|+-+.-+.++.|||.+.|++.- | ++.|.|+|||-..- .+...+|.+.
T Consensus 22 g~sDPYv~i~~--g~~~~----rTk~~~~~~nP~WnE~f~f~v~~---~-~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~ 91 (126)
T cd08379 22 GSTDAYCVAKY--GPKWV----RTRTVEDSSNPRWNEQYTWPVYD---P-CTVLTVGVFDNSQSHWKEAVQPDVLIGKVR 91 (126)
T ss_pred CCCCeeEEEEE--CCEEe----EcCcccCCCCCcceeEEEEEecC---C-CCEEEEEEEECCCccccccCCCCceEEEEE
Confidence 45688999885 66533 56555556679999999999852 2 35899999996543 2457899999
Q ss_pred EEcee
Q psy10441 128 ISLFG 132 (867)
Q Consensus 128 i~LFd 132 (867)
++|=+
T Consensus 92 i~l~~ 96 (126)
T cd08379 92 IRLST 96 (126)
T ss_pred EEHHH
Confidence 98643
No 122
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=93.68 E-value=0.25 Score=46.75 Aligned_cols=74 Identities=15% Similarity=0.046 Sum_probs=54.0
Q ss_pred ccceEEEEEEEECC--eeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecC----CCCceeEEEEEE
Q psy10441 55 CADLVVFCQIFSDG--VPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGG----ATQLIPIGGTCI 128 (867)
Q Consensus 55 ~~~l~V~~ql~~g~--~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~----~~~~~~vG~t~i 128 (867)
.++-||.+.+..+. +. ....+|..+.-+..+.|||-+.|++.. +....|.|.|||... .++...+|.+.+
T Consensus 20 ~~DPyv~v~~~~~~~~~~-~~~~kT~vi~~t~nP~wne~f~f~~~~---~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i 95 (120)
T cd04048 20 KSDPFVVVYVKTGGSGQW-VEIGRTEVIKNNLNPDFVTTFTVDYYF---EEVQKLRFEVYDVDSKSKDLSDHDFLGEAEC 95 (120)
T ss_pred CCCcEEEEEEEcCCCCce-EEeccEeEeCCCCCCCceEEEEEEEEe---EeeeEEEEEEEEecCCcCCCCCCcEEEEEEE
Confidence 34668888876553 22 223567776666779999999999654 455689999999875 456678999999
Q ss_pred Ecee
Q psy10441 129 SLFG 132 (867)
Q Consensus 129 ~LFd 132 (867)
++=+
T Consensus 96 ~l~~ 99 (120)
T cd04048 96 TLGE 99 (120)
T ss_pred EHHH
Confidence 9855
No 123
>PLN02223 phosphoinositide phospholipase C
Probab=93.56 E-value=0.37 Score=57.06 Aligned_cols=85 Identities=25% Similarity=0.404 Sum_probs=60.1
Q ss_pred ccceEEEEEEEECCeee-ecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEceec
Q psy10441 55 CADLVVFCQIFSDGVPL-SLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFGK 133 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L-~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd~ 133 (867)
.+|.||+++|+ | -|. +.-.+|..+.=+-.+.|||-++|+|.. |--|.|.|.|||....++...+|.+++|+
T Consensus 434 ~~DpyV~VeI~-G-vp~D~~~~kT~v~nNg~nPvWne~F~F~i~~---PELAlLrf~V~D~D~~~~ddfiGQ~~LPv--- 505 (537)
T PLN02223 434 KPDLYVRISIA-G-VPHDEKIMKTTVKNNEWKPTWGEEFTFPLTY---PDLALISFEVYDYEVSTADAFCGQTCLPV--- 505 (537)
T ss_pred CCCeEEEEEEe-e-ccCCcceeEEEeCCCCcCceecceeEEEEEc---cCceEEEEEEEecCCCCCCcEEEEEecch---
Confidence 56899999996 2 121 111234322111236799999999865 66799999999976544556889999998
Q ss_pred CCcccccceeeEecc
Q psy10441 134 YGVFRQGMMDLKVWP 148 (867)
Q Consensus 134 ~~~Lr~G~~~L~lwp 148 (867)
..||+|...+.|..
T Consensus 506 -~~Lr~GyR~VpL~~ 519 (537)
T PLN02223 506 -SELIEGIRAVPLYD 519 (537)
T ss_pred -HHhcCCceeEeccC
Confidence 67999999998753
No 124
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=93.48 E-value=0.97 Score=43.34 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=51.0
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEc
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISL 130 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~L 130 (867)
..+-||++.+-..+.. ...-+|..+.-+..+.|||.+.|++.-.+ .+..|.|+|||....++...+|.+.++|
T Consensus 33 ~~dpyv~v~~~~~~~~-~~~~rT~v~~~~~~P~wne~f~~~~~~~~--~~~~l~v~v~d~~~~~~~~~iG~~~~~l 105 (131)
T cd04026 33 LSDPYVKLKLIPDPKN-ETKQKTKTIKKTLNPVWNETFTFDLKPAD--KDRRLSIEVWDWDRTTRNDFMGSLSFGV 105 (131)
T ss_pred CCCCcEEEEEEcCCCC-CceecceeecCCCCCCccceEEEeCCchh--cCCEEEEEEEECCCCCCcceeEEEEEeH
Confidence 3577888888643321 11234544444557889999999976444 4678999999976545667899999997
No 125
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=93.46 E-value=0.58 Score=43.63 Aligned_cols=69 Identities=22% Similarity=0.268 Sum_probs=49.7
Q ss_pred cceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 56 ADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 56 ~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
++-||.+.+ +++.. -+|..+.-+..+.|||-+.|++.-. .+..|.|.||+....++...||.+.+++=+
T Consensus 20 ~dpyv~v~~--~~~~~---~~T~v~~~~~~P~Wne~f~~~~~~~---~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (115)
T cd04040 20 SDPFVKFYL--NGEKV---FKTKTIKKTLNPVWNESFEVPVPSR---VRAVLKVEVYDWDRGGKDDLLGSAYIDLSD 88 (115)
T ss_pred CCCeEEEEE--CCCcc---eeeceecCCCCCcccccEEEEeccC---CCCEEEEEEEeCCCCCCCCceEEEEEEHHH
Confidence 466777776 33322 2555555456788999999987532 568999999998766666789999999855
No 126
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=93.45 E-value=0.77 Score=43.59 Aligned_cols=70 Identities=13% Similarity=0.027 Sum_probs=47.3
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEc
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISL 130 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~L 130 (867)
.++-||.+.+-.++... .+|..+.-+.++.|||-++|++.-. ....|.|+|||....++...+|.+.++|
T Consensus 21 ~~Dpyv~v~~~~~~~~~---~kT~~~~~t~~P~Wne~f~f~i~~~---~~~~L~i~v~d~d~~~~~~~iG~~~i~l 90 (126)
T cd04043 21 LSDPYVTLVDTNGKRRI---AKTRTIYDTLNPRWDEEFELEVPAG---EPLWISATVWDRSFVGKHDLCGRASLKL 90 (126)
T ss_pred CCCceEEEEECCCCeee---ecccEecCCCCCcccceEEEEcCCC---CCCEEEEEEEECCCCCCCceEEEEEEec
Confidence 45668776532111222 2454443345688999999997552 4678999999976655667899999987
No 127
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=93.39 E-value=1 Score=46.56 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=54.5
Q ss_pred CCCCccccceEEeccccCCcCccceEEEEEEEecCC---------CCceeEEEEEEEceecCCcccccceeeEeccCC
Q psy10441 82 FTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGA---------TQLIPIGGTCISLFGKYGVFRQGMMDLKVWPNQ 150 (867)
Q Consensus 82 f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~---------~~~~~vG~t~i~LFd~~~~Lr~G~~~L~lwp~~ 150 (867)
..+.+.|+|-|++.+.. +|....-|-||+|.++.. +...++|-+-+||+...++|..|.+.|.|....
T Consensus 65 h~k~P~f~dEiKI~LP~-~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~~~~~l~~g~~~LpV~~~~ 141 (185)
T cd08697 65 HNQNPEFYDEIKIELPT-QLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLKDKGRLNSEEQTPPVANLL 141 (185)
T ss_pred cCCCCccceeEEEecCC-cCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeecCCCEEecCCEeeeEEecC
Confidence 34668899999886665 456788999999998732 124689999999999889999999999987543
No 128
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=93.38 E-value=0.28 Score=46.91 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=50.5
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.+|-||.+.+ ++. . ...+|..+.-+.++.|||-+.|++. +.+..|.|.|||....++...+|.+.++|=+
T Consensus 17 ~~dpyv~v~~--~~~-~-~~~kT~v~~~t~nP~Wne~f~f~~~----~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 86 (126)
T cd08678 17 SSNPYCVLEM--DEP-P-QKYQSSTQKNTSNPFWDEHFLFELS----PNSKELLFEVYDNGKKSDSKFLGLAIVPFDE 86 (126)
T ss_pred CcCCEEEEEE--CCC-C-cEEEeEEEecCCCCccCceEEEEeC----CCCCEEEEEEEECCCCCCCceEEEEEEeHHH
Confidence 4567888876 221 1 1235555544557899999999874 3477899999998776667899999999854
No 129
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=93.23 E-value=0.28 Score=48.80 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=52.5
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEecccc--------CCcC----ccceEEEEEEEecCCCCcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMF--------SDLP----RNAILALTIYDCGGATQLIP 122 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~--------~dLP----r~a~L~~tI~~~~~~~~~~~ 122 (867)
.++-||.+.+..+.+..+ ..+|+-+.-+.++.|||.+.|++.. -++| ....|.|+||+....++...
T Consensus 18 ~sDPYV~V~l~~~~~k~~-~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddf 96 (148)
T cd04010 18 TCDPYASVTLIYSNKKQD-TKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVF 96 (148)
T ss_pred CCCceEEEEEeCCcccCc-ccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCce
Confidence 457799888876543221 2345544445578899999999852 1233 24689999999765556678
Q ss_pred EEEEEEEcee
Q psy10441 123 IGGTCISLFG 132 (867)
Q Consensus 123 vG~t~i~LFd 132 (867)
+|.+.++|=+
T Consensus 97 LG~v~i~l~~ 106 (148)
T cd04010 97 LGEVRIPLRG 106 (148)
T ss_pred eEEEEEeccc
Confidence 9999998744
No 130
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=93.02 E-value=0.46 Score=47.76 Aligned_cols=76 Identities=20% Similarity=0.127 Sum_probs=55.7
Q ss_pred cccceEEEEEEEEC-CeeeecceecccccCCCCccccceEEeccccC------CcCccceEEEEEEEecCC-CCceeEEE
Q psy10441 54 VCADLVVFCQIFSD-GVPLSLPISSSYKSFTNRWDWNEWITIPLMFS------DLPRNAILALTIYDCGGA-TQLIPIGG 125 (867)
Q Consensus 54 ~~~~l~V~~ql~~g-~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~------dLPr~a~L~~tI~~~~~~-~~~~~vG~ 125 (867)
+.+|-||+..+.+. .++- ..+|+.+.-+.++.|||-++|+|.-. .+++.+ |.|+||+..+- .+...+|.
T Consensus 23 ~~~DpYVk~~l~~p~~~~~--k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~-L~~~V~d~~~f~~~D~~iG~ 99 (155)
T cd08690 23 KDLDTYVKFEFPYPNEEPQ--SGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHG-LKFEVYHKGGFLRSDKLLGT 99 (155)
T ss_pred CCCCeEEEEEEecCCCCCc--eeecCcccCCCCCcccceEEEEeccccchhhhhccCCc-EEEEEEeCCCcccCCCeeEE
Confidence 45688999997444 3332 35777777777899999999998655 477654 99999997642 24568999
Q ss_pred EEEEcee
Q psy10441 126 TCISLFG 132 (867)
Q Consensus 126 t~i~LFd 132 (867)
+.++|=+
T Consensus 100 ~~i~L~~ 106 (155)
T cd08690 100 AQVKLEP 106 (155)
T ss_pred EEEEccc
Confidence 9888844
No 131
>KOG0169|consensus
Probab=92.99 E-value=0.3 Score=59.13 Aligned_cols=107 Identities=19% Similarity=0.167 Sum_probs=71.9
Q ss_pred EEEEEeeeecCCCCCchhhhhcCccccccCCccccccceEEEEEEEECCeee-ecceecccccC-CCCccccceEEeccc
Q psy10441 20 IQIKIGTLEGVTLKPDYEKMLSDPMLKYSGLYQEVCADLVVFCQIFSDGVPL-SLPISSSYKSF-TNRWDWNEWITIPLM 97 (867)
Q Consensus 20 v~ikI~~LeG~~~~~~~~~~l~~p~l~~~~~~~~~~~~l~V~~ql~~g~~~L-~~pv~T~~~~f-~~~~~Wnewl~fpI~ 97 (867)
++|||.+=+|..+... .+.......|++||+ .+| -|. |.--+|.++.- +-.+.|+|-++|++.
T Consensus 618 L~IkI~sGq~~~~~~~-----------~~~~~~~~dP~v~Ve---I~G-vp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~ 682 (746)
T KOG0169|consen 618 LKIKIISGQGWLPDFG-----------KTKFGEISDPDVYVE---IAG-VPADCAEQKTKVVKNNGFNPIWDEEFEFQLS 682 (746)
T ss_pred eEEEEEecCcccCCCC-----------CCcccccCCCCEEEE---Ecc-cccchhhhhceeeccCCcCcccCCeEEEEEe
Confidence 6777777777555332 111222335677777 223 222 11224543321 113669999999999
Q ss_pred cCCcCccceEEEEEEEecCCCCceeEEEEEEEceecCCcccccceeeEecc
Q psy10441 98 FSDLPRNAILALTIYDCGGATQLIPIGGTCISLFGKYGVFRQGMMDLKVWP 148 (867)
Q Consensus 98 ~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd~~~~Lr~G~~~L~lwp 148 (867)
+.+| |.|.|.|+|....++.-.+|-+++|+ ..|++|...+++.-
T Consensus 683 vPEL---AliRF~V~d~d~~~~ddF~GQ~tlP~----~~L~~GyRhVpL~~ 726 (746)
T KOG0169|consen 683 VPEL---ALIRFEVHDYDYIGKDDFIGQTTLPV----SELRQGYRHVPLLS 726 (746)
T ss_pred ccce---eEEEEEEEecCCCCcccccceeeccH----HHhhCceeeeeecC
Confidence 8877 88999999987777677899999998 68999999998864
No 132
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=92.84 E-value=0.46 Score=44.48 Aligned_cols=68 Identities=19% Similarity=0.182 Sum_probs=48.4
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEce
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLF 131 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LF 131 (867)
.++-||.+.+ |++.. .+|+.+.-+.++.|||.+.|++. + +.+..|.|.|||-..- +...||.+.++|=
T Consensus 12 ~~dPYv~v~v--~~~~~---~kT~v~~~t~nP~Wne~f~f~v~--~-~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~ 79 (111)
T cd04052 12 LLSPYAELYL--NGKLV---YTTRVKKKTNNPSWNASTEFLVT--D-RRKSRVTVVVKDDRDR-HDPVLGSVSISLN 79 (111)
T ss_pred CCCceEEEEE--CCEEE---EEEeeeccCCCCccCCceEEEec--C-cCCCEEEEEEEECCCC-CCCeEEEEEecHH
Confidence 4577998887 55432 23444344567889999999874 2 3577899999996554 4578999999973
No 133
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=92.77 E-value=0.69 Score=45.94 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=57.8
Q ss_pred cceEEEEEEEEC-CeeeecceecccccC--CCCccccceEEeccccCCcCccceEEEEEEEecCCCCce-eEEEEEEEce
Q psy10441 56 ADLVVFCQIFSD-GVPLSLPISSSYKSF--TNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLI-PIGGTCISLF 131 (867)
Q Consensus 56 ~~l~V~~ql~~g-~~~L~~pv~T~~~~f--~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~-~vG~t~i~LF 131 (867)
.+=+++++|.++ |++++.+-.|+...- .+.+.||.-+.+...+.+||.+|.+-|.+-..+...+.. .-+|+-+.+
T Consensus 31 ~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~kH~K~kk~k~S~kcw~fme~- 109 (147)
T PF14186_consen 31 IDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEFKHYKPKKKKTSTKCWAFMEL- 109 (147)
T ss_dssp EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEEEEEETTTTCEEEEEEEEEEG-
T ss_pred cCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEEEeeeccceeeeeeEEEEEEh-
Confidence 355889999885 888986656755422 234779999999999999999999999999887665444 458887777
Q ss_pred ecCCcccccceeeEecc
Q psy10441 132 GKYGVFRQGMMDLKVWP 148 (867)
Q Consensus 132 d~~~~Lr~G~~~L~lwp 148 (867)
..++.|...+.+|.
T Consensus 110 ---dei~~g~~~lely~ 123 (147)
T PF14186_consen 110 ---DEIKPGPVVLELYK 123 (147)
T ss_dssp ---GG--SEEEEE--EE
T ss_pred ---hhccCCceeeehhc
Confidence 78899999999985
No 134
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=92.72 E-value=0.74 Score=46.19 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=48.3
Q ss_pred ccccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEc
Q psy10441 53 EVCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISL 130 (867)
Q Consensus 53 ~~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~L 130 (867)
.+.+|-||++++ ++.... +|.-+.-+.++.|||.+.|++. ...+.|.|+|||-..- +...||.++++|
T Consensus 55 ~g~sDPYv~V~l--~~~~~~---rT~v~~~~~nP~WnE~F~~~~~----~~~~~l~~~V~d~d~~-~~~~IG~~~i~l 122 (158)
T cd04015 55 KITSDPYATVDL--AGARVA---RTRVIENSENPVWNESFHIYCA----HYASHVEFTVKDNDVV-GAQLIGRAYIPV 122 (158)
T ss_pred CCCcCeEEEEEE--CCeEee---EEEEeCCCCCCccceEEEEEcc----CCCCEEEEEEEeCCCc-CCcEEEEEEEEh
Confidence 345799999997 554442 4444444456889999999874 2346899999985432 336899999998
No 135
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=92.61 E-value=0.47 Score=45.00 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=48.7
Q ss_pred cceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 56 ADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 56 ~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
++-||.+.+ +++. .+|..+.-+..+.|||.+.|++.- +.+..|.|+|||....++...+|.++++|=+
T Consensus 24 ~dPyv~v~~--~~~~----~kT~~~~~t~~P~Wne~f~~~~~~---~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~ 91 (128)
T cd04024 24 SDPYAILSV--GAQR----FKTQTIPNTLNPKWNYWCEFPIFS---AQNQLLKLILWDKDRFAGKDYLGEFDIALEE 91 (128)
T ss_pred cCCeEEEEE--CCEE----EecceecCCcCCccCCcEEEEecC---CCCCEEEEEEEECCCCCCCCcceEEEEEHHH
Confidence 455775554 5443 355554445678899999998754 5678999999997665566789999999854
No 136
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=92.51 E-value=0.62 Score=44.78 Aligned_cols=67 Identities=16% Similarity=0.049 Sum_probs=47.8
Q ss_pred ccceEEEEEEEECCeeeecceecccccC-CCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEce
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSF-TNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLF 131 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f-~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LF 131 (867)
.+|-||.+.| |++.. +|....- +.++.|||.+.|++.- -...|.|+|||-..-++..+||.+.++|=
T Consensus 21 ~sDPYv~i~l--g~~~~----kT~v~~~~~~nP~WNe~F~f~v~~----~~~~l~~~V~d~d~~~~dd~iG~~~i~l~ 88 (121)
T cd04016 21 RMDPYCRIRV--GHAVY----ETPTAYNGAKNPRWNKTIQCTLPE----GVDSIYIEIFDERAFTMDERIAWTHITIP 88 (121)
T ss_pred CCCceEEEEE--CCEEE----EeEEccCCCCCCccCeEEEEEecC----CCcEEEEEEEeCCCCcCCceEEEEEEECc
Confidence 5677999988 55422 4444332 3578899999999742 23579999999765455678999999884
No 137
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=92.28 E-value=0.55 Score=46.02 Aligned_cols=77 Identities=14% Similarity=0.087 Sum_probs=53.4
Q ss_pred cccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCc--------------------CccceEEEEEEE
Q psy10441 54 VCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDL--------------------PRNAILALTIYD 113 (867)
Q Consensus 54 ~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dL--------------------Pr~a~L~~tI~~ 113 (867)
..+|+||.+-|... +.-..-+.+-|........||+-+.||+.|... =..+.|.+.|||
T Consensus 23 ~~sD~yVK~~L~~~-~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD 101 (133)
T cd08374 23 KMSDIYVKGWLDGL-EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWD 101 (133)
T ss_pred cccCeEEEEEEccC-cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEE
Confidence 35899999998754 222223345677777778899999999888322 235788899998
Q ss_pred ecCCCCceeEEEEEEEce
Q psy10441 114 CGGATQLIPIGGTCISLF 131 (867)
Q Consensus 114 ~~~~~~~~~vG~t~i~LF 131 (867)
...-+....+|.+.++|=
T Consensus 102 ~D~~s~dd~iG~~~l~l~ 119 (133)
T cd08374 102 NDKFSPDDFLGSLELDLS 119 (133)
T ss_pred CcccCCCCcceEEEEEhh
Confidence 765444457787777763
No 138
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=92.22 E-value=0.57 Score=46.44 Aligned_cols=66 Identities=21% Similarity=0.257 Sum_probs=48.0
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEc
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISL 130 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~L 130 (867)
.++-||.+.+ |++ ..+|+.+.-+.++.|||-++|++. + | ...|.|+|||....+....+|.+.++|
T Consensus 21 ~sDPYV~v~~--g~~----~~kT~vvk~t~nP~WnE~f~f~i~--~-~-~~~l~~~V~D~d~~~~dd~iG~a~i~l 86 (145)
T cd04038 21 SSDPYVVLTL--GNQ----KVKTRVIKKNLNPVWNEELTLSVP--N-P-MAPLKLEVFDKDTFSKDDSMGEAEIDL 86 (145)
T ss_pred CcCcEEEEEE--CCE----EEEeeeEcCCCCCeecccEEEEec--C-C-CCEEEEEEEECCCCCCCCEEEEEEEEH
Confidence 3566877765 544 245655554567899999999974 2 2 788999999976555567899999877
No 139
>PLN02228 Phosphoinositide phospholipase C
Probab=92.01 E-value=0.8 Score=54.90 Aligned_cols=84 Identities=23% Similarity=0.264 Sum_probs=59.7
Q ss_pred ccceEEEEEEEECCeeee-cceecccccCCCCccc-cceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLS-LPISSSYKSFTNRWDW-NEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~-~pv~T~~~~f~~~~~W-newl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
..+.||+++|+- -|.- ...+|....-+-.+.| ||-++|++. +|.=|.|.|+|+|....+....+|+.++|+
T Consensus 457 ~~DpyV~Vei~G--~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~---~pELA~lRf~V~D~d~~~~d~figq~~lPv-- 529 (567)
T PLN02228 457 PPDFFVKIGIAG--VPRDTVSYRTETAVDQWFPIWGNDEFLFQLR---VPELALLWFKVQDYDNDTQNDFAGQTCLPL-- 529 (567)
T ss_pred CCCcEEEEEEEe--cCCCCCcceeeccCCCCCceECCCeEEEEEE---cCceeEEEEEEEeCCCCCCCCEEEEEEcch--
Confidence 468899999962 1111 1123433221124789 999999986 466799999999975444456789999998
Q ss_pred cCCcccccceeeEec
Q psy10441 133 KYGVFRQGMMDLKVW 147 (867)
Q Consensus 133 ~~~~Lr~G~~~L~lw 147 (867)
..||+|...+.|.
T Consensus 530 --~~Lr~GYR~VpL~ 542 (567)
T PLN02228 530 --PELKSGVRAVRLH 542 (567)
T ss_pred --hHhhCCeeEEEcc
Confidence 5799999999885
No 140
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=92.00 E-value=0.67 Score=43.41 Aligned_cols=68 Identities=16% Similarity=0.091 Sum_probs=48.5
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||.+.+ +++ ..+|..+.-+..+.|||.+.|++.- +.+..|.|+|||.... +...+|.+.++|-+
T Consensus 27 ~~dPyv~v~~--~~~----~~kT~~~~~t~~P~W~e~f~~~v~~---~~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~ 94 (121)
T cd08391 27 KSDPYVIVRV--GAQ----TFKSKVIKENLNPKWNEVYEAVVDE---VPGQELEIELFDEDPD-KDDFLGRLSIDLGS 94 (121)
T ss_pred CcCCEEEEEE--CCE----eEEccccCCCCCCcccceEEEEeCC---CCCCEEEEEEEecCCC-CCCcEEEEEEEHHH
Confidence 4566888875 442 2355554445678899999988732 3578999999997654 55689999999855
No 141
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=91.94 E-value=1.7 Score=41.17 Aligned_cols=72 Identities=22% Similarity=0.171 Sum_probs=50.1
Q ss_pred ccceEEEEEEEECCeeeecceeccccc-CCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKS-FTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~-f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||.+.+ ++... .|+... -+..+.|||-+.|++.-.+...+..|.|.|||....++...||.+.++|=+
T Consensus 21 ~~dpyv~v~~--~~~~~----~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~ 93 (124)
T cd04049 21 KIDPYVIIQC--RTQER----KSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKG 93 (124)
T ss_pred CcCceEEEEE--CCEee----eeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHH
Confidence 3456777765 44332 333322 145688999999998776655678999999997654456789999999844
No 142
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=91.90 E-value=0.71 Score=44.04 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=46.8
Q ss_pred cceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 56 ADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 56 ~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
+|-||.+.+ +++ ..+|.-+.-+.++.|||.+.|++. -+.+..|.|+|||.... +...+|.+.++|=+
T Consensus 17 ~Dpyv~v~l--~~~----~~kT~v~~~t~nP~Wne~F~f~~~---~~~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~ 83 (121)
T cd08378 17 NDPVVEVKL--GNY----KGSTKAIERTSNPEWNQVFAFSKD---RLQGSTLEVSVWDKDKA-KDDFLGGVCFDLSE 83 (121)
T ss_pred CCCEEEEEE--CCc----cccccccCCCCCCccceEEEEEcC---CCcCCEEEEEEEeCCCC-cCceeeeEEEEhHh
Confidence 466888876 332 235544444457889999999853 24778999999997543 45678999888754
No 143
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=91.86 E-value=0.6 Score=45.66 Aligned_cols=75 Identities=13% Similarity=0.044 Sum_probs=52.8
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccC------------CcCccceEEEEEEEecCCCCcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFS------------DLPRNAILALTIYDCGGATQLIP 122 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~------------dLPr~a~L~~tI~~~~~~~~~~~ 122 (867)
.++-||++.+-...+. ..-+|..+.-+..+.|||-+.|++.-. +-.....|.|+|||....++...
T Consensus 18 ~~dPyv~v~~~~~~~~--~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~ 95 (137)
T cd08675 18 TCDPFARVTLNYSSKT--DTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDF 95 (137)
T ss_pred CCCcEEEEEEecCCcC--CeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcE
Confidence 4577888877532111 123555555566789999999997654 34467889999999876556778
Q ss_pred EEEEEEEce
Q psy10441 123 IGGTCISLF 131 (867)
Q Consensus 123 vG~t~i~LF 131 (867)
||.+.++|=
T Consensus 96 IG~~~i~l~ 104 (137)
T cd08675 96 LGEVRIPLQ 104 (137)
T ss_pred EEEEEEehh
Confidence 999999863
No 144
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=91.72 E-value=1.2 Score=41.70 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=46.8
Q ss_pred ccceEEEEEEEECCeeeecceecccccC-CCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSF-TNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f-~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||.+.+ +++ ..+|..+.- +.++.|||-++|++.. +.+..|.|+|||....+ ...+|.+.+++=+
T Consensus 21 ~~dpyv~v~~--~~~----~~kT~~~~~~~~nP~Wne~f~f~v~~---~~~~~l~i~v~d~~~~~-~~~iG~~~~~l~~ 89 (118)
T cd08681 21 KQDPYCVLRI--GGV----TKKTKTDFRGGQHPEWDEELRFEITE---DKKPILKVAVFDDDKRK-PDLIGDTEVDLSP 89 (118)
T ss_pred CCCceEEEEE--CCC----ccccccccCCCCCCccCceEEEEecC---CCCCEEEEEEEeCCCCC-CcceEEEEEecHH
Confidence 3566888875 331 123433222 3468899999999865 35678999999965443 5689999998854
No 145
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=91.61 E-value=0.55 Score=43.54 Aligned_cols=74 Identities=18% Similarity=0.099 Sum_probs=49.4
Q ss_pred ccceEEEEEEEECC-eeeecceecccccCCCCccccceEEeccccCCcC---ccceEEEEEEEecCCCCceeEEEEEEEc
Q psy10441 55 CADLVVFCQIFSDG-VPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLP---RNAILALTIYDCGGATQLIPIGGTCISL 130 (867)
Q Consensus 55 ~~~l~V~~ql~~g~-~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLP---r~a~L~~tI~~~~~~~~~~~vG~t~i~L 130 (867)
.+|-||.+.+..++ +... ..+|..+.-+..+.|| -+.|| +.+|. .+..|.|.|||....++...||.++++|
T Consensus 20 ~~DPyv~v~~~~~~~~~~~-~~kT~vi~~t~nP~Wn-~f~~~--~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l 95 (110)
T cd04047 20 KSDPFLEISRQSEDGTWVL-VYRTEVIKNTLNPVWK-PFTIP--LQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTL 95 (110)
T ss_pred CCCeeEEEEEECCCCCEEE-EEeeeEeccCCCCceE-EEEEE--HHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEH
Confidence 45668877765332 3332 3456665555678899 34444 44443 3689999999987666678899999988
Q ss_pred ee
Q psy10441 131 FG 132 (867)
Q Consensus 131 Fd 132 (867)
=+
T Consensus 96 ~~ 97 (110)
T cd04047 96 DE 97 (110)
T ss_pred HH
Confidence 54
No 146
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=91.33 E-value=2.2 Score=39.92 Aligned_cols=67 Identities=21% Similarity=0.352 Sum_probs=47.1
Q ss_pred cceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 56 ADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 56 ~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
++-||.+.+ ++.. .+|..+.-+.++.|||-+.|++. ++ ...|.|+|||....++...+|.+.++|-+
T Consensus 22 ~dPyv~v~~--~~~~----~~T~~~~~t~nP~W~e~f~~~~~--~~--~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (119)
T cd08377 22 SDPFCVLEL--VNAR----LQTHTIYKTLNPEWNKIFTFPIK--DI--HDVLEVTVYDEDKDKKPEFLGKVAIPLLS 88 (119)
T ss_pred CCcEEEEEE--CCEe----eecceecCCcCCccCcEEEEEec--Cc--CCEEEEEEEECCCCCCCceeeEEEEEHHH
Confidence 466887765 3332 24544443456889999999864 32 57899999997654566789999999855
No 147
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=91.12 E-value=0.52 Score=48.78 Aligned_cols=66 Identities=20% Similarity=0.349 Sum_probs=54.4
Q ss_pred CCCccccceEEeccccCCcCccceEEEEEEEecCCC--CceeEEEEEEEceecC-CcccccceeeEeccC
Q psy10441 83 TNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGAT--QLIPIGGTCISLFGKY-GVFRQGMMDLKVWPN 149 (867)
Q Consensus 83 ~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~--~~~~vG~t~i~LFd~~-~~Lr~G~~~L~lwp~ 149 (867)
.+.+.|||.|.+.|...+.+ .+-|.|+++.++... +..|+|-+=++|.+.+ -.|+.|.+.|.||..
T Consensus 63 ~~~P~W~EtiKi~lP~~~~~-~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~~~gt~l~Dg~H~L~vyk~ 131 (189)
T cd08695 63 NNSPRWNETIKLPIPIDKFR-GSHLRFEFRHCSTKDKGEKKLFGFSFVPLMREDGTTLPDGSHELYVYKC 131 (189)
T ss_pred CCCCCCceeEEEecChhhCC-CeeEEEEEEEeeeccCCCCCceEEEEEeecccCCcEEcCCcEEEEEEec
Confidence 45688999999999887665 679999999877542 3478999999999986 578999999999964
No 148
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=91.00 E-value=2.3 Score=40.31 Aligned_cols=67 Identities=15% Similarity=0.051 Sum_probs=47.2
Q ss_pred cceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEce
Q psy10441 56 ADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLF 131 (867)
Q Consensus 56 ~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LF 131 (867)
+|-||.+.+ +++.+. +|....-+.++.|||-+.|++.- -...|.|.|||-..-++...+|.+.+++-
T Consensus 21 ~DPYv~v~~--~~~~~~---kT~v~~~t~nP~Wne~f~~~~~~----~~~~l~v~v~d~~~~~~d~~iG~~~~~~~ 87 (121)
T cd04054 21 SDPYCIVKV--DNEVII---RTATVWKTLNPFWGEEYTVHLPP----GFHTVSFYVLDEDTLSRDDVIGKVSLTRE 87 (121)
T ss_pred CCceEEEEE--CCEeee---eeeeEcCCCCCcccceEEEeeCC----CCCEEEEEEEECCCCCCCCEEEEEEEcHH
Confidence 466877765 555442 45444445678899999998742 23789999999765555678999999863
No 149
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=90.59 E-value=1.1 Score=44.05 Aligned_cols=73 Identities=15% Similarity=0.045 Sum_probs=50.9
Q ss_pred ccceEEEEEEEECCeee-------ecceecccccCCCCccc-cceEEeccccCCcCccceEEEEEEEecCCCC---ceeE
Q psy10441 55 CADLVVFCQIFSDGVPL-------SLPISSSYKSFTNRWDW-NEWITIPLMFSDLPRNAILALTIYDCGGATQ---LIPI 123 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L-------~~pv~T~~~~f~~~~~W-newl~fpI~~~dLPr~a~L~~tI~~~~~~~~---~~~v 123 (867)
.+|=||.+.+.-+++.+ ...-+|..+.-+-++.| ||-+.|++.. +..|.|+|||....++ ...+
T Consensus 20 ~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-----~~~L~v~V~D~~~~~~~~~~d~l 94 (137)
T cd08691 20 NPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-----TDVLEIEVKDKFAKSRPIIRRFL 94 (137)
T ss_pred CCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-----CCEEEEEEEecCCCCCccCCceE
Confidence 45778888887666542 11235666555557889 9999999853 4479999999654332 3689
Q ss_pred EEEEEEcee
Q psy10441 124 GGTCISLFG 132 (867)
Q Consensus 124 G~t~i~LFd 132 (867)
|.+.++|=+
T Consensus 95 G~~~i~l~~ 103 (137)
T cd08691 95 GKLSIPVQR 103 (137)
T ss_pred EEEEEEHHH
Confidence 999998744
No 150
>KOG1028|consensus
Probab=90.57 E-value=0.64 Score=54.11 Aligned_cols=74 Identities=22% Similarity=0.113 Sum_probs=59.9
Q ss_pred ccccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEE
Q psy10441 53 EVCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCI 128 (867)
Q Consensus 53 ~~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i 128 (867)
...+|-||.+.+.++++.+.. ..|+.+.-+.++.|||-+.|.|.-.+|-. +.|.|+|||...-+....||++.+
T Consensus 316 ~~~~d~~Vk~~l~~~~~~~~k-kkT~~~~~~~npv~nesf~F~vp~~~l~~-~~l~l~V~d~d~~~~~~~iG~~~l 389 (421)
T KOG1028|consen 316 GGLSDPYVKVTLLDGDKRLSK-KKTSVKKKTLNPVFNETFVFDVPPEQLAE-VSLELTVWDHDTLGSNDLIGRCIL 389 (421)
T ss_pred CCCCCccEEEEEecCCceeee-eeeecccCCCCCcccccEEEeCCHHHhhe-eEEEEEEEEcccccccceeeEEEe
Confidence 345679999999999987764 56777777778899999999988888887 899999999877666567786544
No 151
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=90.25 E-value=1.3 Score=42.62 Aligned_cols=69 Identities=23% Similarity=0.187 Sum_probs=45.4
Q ss_pred cceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEec-------CCCCceeEEEEEE
Q psy10441 56 ADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCG-------GATQLIPIGGTCI 128 (867)
Q Consensus 56 ~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~-------~~~~~~~vG~t~i 128 (867)
++-||+..+-.+++.- ....|.-+.-+.++.|||-++|++. ..-.|.|++||.. ..++...+|.+.+
T Consensus 15 sDPYV~l~v~~~~~~~-~~~KTk~i~~TlnPvWnE~F~i~l~-----~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i 88 (118)
T cd08686 15 ANLYCTLEVDSFGYFV-KKAKTRVCRDTTEPNWNEEFEIELE-----GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQI 88 (118)
T ss_pred CCCEEEEEEcCccccc-eeeeeeeecCCCCCccceEEEEEeC-----CCCEEEEEEEEcccccccccccCcccEEEEEEE
Confidence 5778888765444321 1234554444567899999999875 2448999999973 1234567887777
Q ss_pred Ec
Q psy10441 129 SL 130 (867)
Q Consensus 129 ~L 130 (867)
.|
T Consensus 89 ~L 90 (118)
T cd08686 89 QL 90 (118)
T ss_pred EE
Confidence 66
No 152
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=90.22 E-value=2.4 Score=39.47 Aligned_cols=71 Identities=17% Similarity=0.071 Sum_probs=43.8
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||.+.+ +++... +|+-+.- .++.|||.+.|++.-.++ ....|.|.+|+-...++...+|.+.+....
T Consensus 17 ~~dpyv~v~~--~~~~~~---kT~~~~~-~~P~Wne~f~f~v~~~~~-~~~~l~i~v~d~~~~~~~~~~g~v~l~~~~ 87 (117)
T cd08383 17 TRDPYCTVSL--DQVEVA---RTKTVEK-LNPFWGEEFVFDDPPPDV-TFFTLSFYNKDKRSKDRDIVIGKVALSKLD 87 (117)
T ss_pred CCCceEEEEE--CCEEeE---ecceEEC-CCCcccceEEEecCCccc-cEEEEEEEEEecccCCCeeEEEEEEecCcC
Confidence 4567887776 554332 3433323 568899999999865444 235677788886543344556776665543
No 153
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=90.21 E-value=2 Score=43.07 Aligned_cols=50 Identities=28% Similarity=0.252 Sum_probs=38.7
Q ss_pred ecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 76 SSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 76 ~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
+|..+.-+.++.|||.+.|++. ++ .+..|.|+|||.. ...||.+.+++=+
T Consensus 92 kT~v~~~tlnP~WnE~F~f~v~--~~-~~~~L~i~V~D~d----d~~IG~v~i~l~~ 141 (153)
T cd08676 92 VTEVKPQTLNPVWNETFRFEVE--DV-SNDQLHLDIWDHD----DDFLGCVNIPLKD 141 (153)
T ss_pred ecceecCCCCCccccEEEEEec--cC-CCCEEEEEEEecC----CCeEEEEEEEHHH
Confidence 5555555667999999999973 33 4789999999974 4689999999844
No 154
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=89.10 E-value=3.6 Score=39.29 Aligned_cols=67 Identities=12% Similarity=0.052 Sum_probs=46.8
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
.++-||.+. .+++. .+|+.+.-+.++.|||-+.|.+. + .+..|.|+|||.... +...+|.+++++-.
T Consensus 23 ~~dPyv~v~--~~~~~----~kT~v~~~t~nP~Wne~f~f~~~--~--~~~~l~i~V~d~~~~-~d~~lG~~~~~l~~ 89 (126)
T cd04046 23 GADPYVIIK--CEGES----VRSPVQKDTLSPEFDTQAIFYRK--K--PRSPIKIQVWNSNLL-CDEFLGQATLSADP 89 (126)
T ss_pred CcCccEEEE--ECCEE----EEeCccCCCCCCcccceEEEEec--C--CCCEEEEEEEECCCC-CCCceEEEEEeccc
Confidence 345577664 35543 45665555567899999998754 3 367899999996443 35789999999843
No 155
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=88.89 E-value=1.7 Score=43.35 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=49.8
Q ss_pred ceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCC----CceeEEEEEEEcee
Q psy10441 57 DLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGAT----QLIPIGGTCISLFG 132 (867)
Q Consensus 57 ~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~----~~~~vG~t~i~LFd 132 (867)
+.||+++| |+...+ +|+-+.-+..+.|||-+.|+ ++|.-+.|+|+||...+.. +...||.+.|++=+
T Consensus 28 ~~Y~~i~L--d~~~va---RT~v~~~~~nP~W~E~F~f~----~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~ 98 (146)
T cd04013 28 RYYCELCL--DKTLYA---RTTSKLKTDTLFWGEHFEFS----NLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTD 98 (146)
T ss_pred CceEEEEE--CCEEEE---EEEEEcCCCCCcceeeEEec----CCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHH
Confidence 56777665 555554 56665555678899999995 7887788999999765432 45799999999876
No 156
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=88.29 E-value=2.1 Score=40.84 Aligned_cols=68 Identities=15% Similarity=-0.020 Sum_probs=46.9
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEce
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLF 131 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LF 131 (867)
.+|-||.+.+ +++... +|.-+.-+..+.|||-++|++.=. ...|.|++|+-..-++...+|.+.++|=
T Consensus 21 ~sDpYv~v~l--~~~~~~---kT~v~~kt~~P~WnE~F~f~v~~~----~~~l~~~v~d~~~~~~~~~iG~~~i~l~ 88 (121)
T cd08401 21 MRDCYCTVNL--DQEEVF---RTKTVEKSLCPFFGEDFYFEIPRT----FRHLSFYIYDRDVLRRDSVIGKVAIKKE 88 (121)
T ss_pred CcCcEEEEEE--CCccEE---EeeEEECCCCCccCCeEEEEcCCC----CCEEEEEEEECCCCCCCceEEEEEEEHH
Confidence 3466888877 554332 232222245688999999997521 3589999999776556678999999873
No 157
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=86.66 E-value=5.7 Score=37.99 Aligned_cols=66 Identities=15% Similarity=0.087 Sum_probs=43.7
Q ss_pred cceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCC-----------CCceeEE
Q psy10441 56 ADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGA-----------TQLIPIG 124 (867)
Q Consensus 56 ~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~-----------~~~~~vG 124 (867)
++-||.+.+ +++. .+|..+.-+..+.|||.+.|++.- | ...|.|.|||.... +....||
T Consensus 22 ~DPyv~v~~--~~~~----~kT~~v~~t~~P~Wne~f~f~~~~---~-~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG 91 (127)
T cd04027 22 SDPYVTVQV--GKTK----KRTKTIPQNLNPVWNEKFHFECHN---S-SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLG 91 (127)
T ss_pred cCcEEEEEE--CCEe----eecceecCCCCCccceEEEEEecC---C-CCEEEEEEEECCCCcccccceeccccCCCcce
Confidence 355777665 4331 355554434568899999998742 2 45899999996531 2456899
Q ss_pred EEEEEce
Q psy10441 125 GTCISLF 131 (867)
Q Consensus 125 ~t~i~LF 131 (867)
.+.+++=
T Consensus 92 ~~~i~l~ 98 (127)
T cd04027 92 QTIIEVR 98 (127)
T ss_pred EEEEEhH
Confidence 9999873
No 158
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=86.46 E-value=4.5 Score=39.18 Aligned_cols=68 Identities=7% Similarity=0.078 Sum_probs=45.7
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEecc-ccCC----cCc-cceEEEEEEEecCCCCceeEEEEEE
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPL-MFSD----LPR-NAILALTIYDCGGATQLIPIGGTCI 128 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI-~~~d----LPr-~a~L~~tI~~~~~~~~~~~vG~t~i 128 (867)
.++-||.+.+ ++. ..+|..+.-+.++.|||.++|++ .++. +.. ...|.|+|||....++...+|.+.+
T Consensus 21 ~~dpyv~v~~--~~~----~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i 94 (135)
T cd04017 21 LSDPFARVSF--LNQ----SQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVA 94 (135)
T ss_pred CCCCEEEEEE--CCe----eeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEe
Confidence 4566887776 232 23455554456788999999984 3432 322 3579999999876566678999986
No 159
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=85.96 E-value=3.5 Score=40.10 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=42.6
Q ss_pred EEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEcee
Q psy10441 59 VVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFG 132 (867)
Q Consensus 59 ~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd 132 (867)
||.+++ |++- ..|....- +.+.|||-+.|.+. + +. +.|.|.|||-. ......+|.+.|+|=+
T Consensus 23 YV~Ik~--g~~k----~kT~v~~~-~nP~WnE~F~F~~~--~-~~-~~L~v~V~dkd-~~~DD~lG~v~i~L~~ 84 (127)
T cd08394 23 YVTLKV--QNVK----STTIAVRG-SQPCWEQDFMFEIN--R-LD-LGLVIELWNKG-LIWDTLVGTVWIPLST 84 (127)
T ss_pred eEEEEE--CCEE----eEeeECCC-CCCceeeEEEEEEc--C-CC-CEEEEEEEeCC-CcCCCceEEEEEEhHH
Confidence 888887 5543 23434333 47899999999973 3 33 33999999943 2345689999999854
No 160
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=85.87 E-value=0.68 Score=49.44 Aligned_cols=114 Identities=18% Similarity=0.266 Sum_probs=72.0
Q ss_pred hCCCCCcccccEEEEecC-Ccceee-eecC-cc--HHHHHhhcCcHHHHHHhh-CCCCCCCCCCcHHHHHHHHHhhhhHH
Q psy10441 640 SENLDLKLTPYRVLATNT-KHGFVQ-FVDS-FP--VAEVLATEGSIQNFFRKH-HPSDNGPYGISSEIMDTYVRSCAGYC 713 (867)
Q Consensus 640 ~~~ldl~l~~Y~Vip~~~-~~GlIE-~V~s-~t--l~~I~~~~~~l~~~l~~~-~~~~~~~~~~~~~a~~~F~~S~A~ys 713 (867)
.+-+...+.|+.|+--|+ ..||+| ||+. .+ +-++......-..|+.-. ..++.+..- -......-.+.-++
T Consensus 63 s~~lGw~~VPpTvlrDGP~G~GmvQlwie~~~~~~lv~l~~~~~~~~g~~~v~~~~d~~g~~v---~l~h~d~~~l~ria 139 (253)
T TIGR03843 63 SEALGWGLVPPTVLRDGPFGPGMVQLWIDPDDDPDLVDLVPAGEVPEGWLPVLRAEDEEGEPV---VLVHADHPQLRRMA 139 (253)
T ss_pred HHHhCCCcCCCeeeecCCCCCceEEEeccCCCccchhhcccccccCCccccccccccccCcce---eecccccHHHhhhh
Confidence 344568899999998766 579998 7763 22 222221110011111100 000000000 01233455677889
Q ss_pred HHHhhhccCCCCCcceeEecCCCEEEEeeccccCCCCCCCCCc
Q psy10441 714 VITYILGVGDRHFDNLLLTTSGKLFHIDFGYILGRDPKPLPPP 756 (867)
Q Consensus 714 v~tYiLGIGDRH~dNIli~~tG~lfHIDFG~ilg~~~k~e~vP 756 (867)
|+=+++.=-|||.+|||..++|+++-||=|++|...+|...+.
T Consensus 140 VfDi~inNaDRk~GhiL~~~dg~l~~IDHGl~f~~~~klrtvl 182 (253)
T TIGR03843 140 VFDALVNNADRKGGHVLPGPDGRVWGVDHGVCFHVEPKLRTVL 182 (253)
T ss_pred hheeeeecCCCCCCcEeEcCCCcEEEecCceecCCCCcccccc
Confidence 9999999999999999999999999999999999987766543
No 161
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=85.48 E-value=1.5 Score=52.37 Aligned_cols=84 Identities=19% Similarity=0.319 Sum_probs=51.7
Q ss_pred CCcccccEEEE--ecCCcceeeeecCccHHHHH--hhcCcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhh
Q psy10441 644 DLKLTPYRVLA--TNTKHGFVQFVDSFPVAEVL--ATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYIL 719 (867)
Q Consensus 644 dl~l~~Y~Vip--~~~~~GlIE~V~s~tl~~I~--~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiL 719 (867)
+-.+...+|.+ +++++=.+|||+.+.+.++. ++.|.=. .+.-+++++++--.- +..=+
T Consensus 225 ~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~g~d~-----------------k~ia~~~~~~f~~q~-~~dgf 286 (517)
T COG0661 225 DPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSAGIDR-----------------KELAELLVRAFLRQL-LRDGF 286 (517)
T ss_pred CCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhcCCCH-----------------HHHHHHHHHHHHHHH-HhcCc
Confidence 55566778885 68888889999988877774 2221000 001112222111110 01111
Q ss_pred ccCCCCCcceeEecCCCEEEEeeccc
Q psy10441 720 GVGDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 720 GIGDRH~dNIli~~tG~lfHIDFG~i 745 (867)
==+|=|++||+++.+|+++-+|||.+
T Consensus 287 fHaDpHpGNi~v~~~g~i~~lDfGi~ 312 (517)
T COG0661 287 FHADPHPGNILVRSDGRIVLLDFGIV 312 (517)
T ss_pred cccCCCccceEEecCCcEEEEcCcce
Confidence 12799999999999999999999987
No 162
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=82.91 E-value=22 Score=35.96 Aligned_cols=72 Identities=19% Similarity=0.348 Sum_probs=45.2
Q ss_pred ccEEEEecCC--cceeeeecCccHHHHHhhcCcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhcc--CCC
Q psy10441 649 PYRVLATNTK--HGFVQFVDSFPVAEVLATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGV--GDR 724 (867)
Q Consensus 649 ~Y~Vip~~~~--~GlIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGI--GDR 724 (867)
.+.++..... .=+.|+++..++.+.+...+. ..+..+|.....-+-.|+ ||=
T Consensus 61 ~p~~~~~~~~~~~lv~e~~~g~~l~~~~~~~~~------------------------~~~~~i~~~l~~lH~~gi~H~Dl 116 (199)
T TIGR03724 61 TPVVYDVDPDNKTIVMEYIEGKPLKDVIEEGND------------------------ELLREIGRLVGKLHKAGIVHGDL 116 (199)
T ss_pred CCEEEEEECCCCEEEEEEECCccHHHHHhhcHH------------------------HHHHHHHHHHHHHHHCCeecCCC
Confidence 3444445444 334778887788776543211 222333333333344565 899
Q ss_pred CCcceeEecCCCEEEEeeccc
Q psy10441 725 HFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 725 H~dNIli~~tG~lfHIDFG~i 745 (867)
|++|||++ +|++.-||||..
T Consensus 117 ~~~Nil~~-~~~~~liDfg~a 136 (199)
T TIGR03724 117 TTSNIIVR-DDKLYLIDFGLG 136 (199)
T ss_pred CcceEEEE-CCcEEEEECCCC
Confidence 99999999 899999999975
No 163
>PLN03008 Phospholipase D delta
Probab=82.19 E-value=3.7 Score=51.15 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=49.4
Q ss_pred cccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEce
Q psy10441 54 VCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLF 131 (867)
Q Consensus 54 ~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LF 131 (867)
..+|.||++.| |++.+. +|.-+.-+.++.|||-++|++.- ..+.|.|+|||-..-+ ..+||.+.|+|=
T Consensus 75 ~tSDPYV~I~L--g~~rv~---RTrVi~n~~NPvWNE~F~f~vah----~~s~L~f~VkD~D~~g-aD~IG~a~IPL~ 142 (868)
T PLN03008 75 ITSDPYVTVVV--PQATLA---RTRVLKNSQEPLWDEKFNISIAH----PFAYLEFQVKDDDVFG-AQIIGTAKIPVR 142 (868)
T ss_pred CCCCceEEEEE--CCccee---eEEeCCCCCCCCcceeEEEEecC----CCceEEEEEEcCCccC-CceeEEEEEEHH
Confidence 46799999999 554443 55554444578899999999764 3578999999955433 367888888763
No 164
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=81.49 E-value=5.2 Score=50.51 Aligned_cols=116 Identities=24% Similarity=0.449 Sum_probs=84.6
Q ss_pred CcceEEEEEecCCCeEEEEEeeCCchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcceeeeecCccHHHHHh
Q psy10441 596 LMPSRLTFLTTTGTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVDSFPVAEVLA 675 (867)
Q Consensus 596 ~~P~~l~f~~~dG~~~~~i~K~GDDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~s~tl~~I~~ 675 (867)
+.=..+.|. +| ..+++|. .+|+-|+...+++..++.-. + ...+..++|+.-+. .|..|+|+..+..
T Consensus 103 ~~V~~l~f~--~g--~kivYKP-r~l~~d~~f~~~l~~ln~~~---~-~~~~~~~~~l~~~~-ygw~EfI~~~~c~---- 168 (825)
T cd04792 103 RVVAILTFS--SG--LKLVYKP-RSLSVDALFQELLEWLNSFL---G-ALPLRTPKVLDRGD-YGWEEFIEHQPCQ---- 168 (825)
T ss_pred ceEEEEEEC--CC--CEEEECC-CCchHHHHHHHHHHHHHhcC---C-ccccccceeeecCC-cceEEeecCCCCC----
Confidence 334455552 34 3578998 78999999999888877632 2 22346777776554 7999999753321
Q ss_pred hcCcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEEEEeeccccCC
Q psy10441 676 TEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHIDFGYILGR 748 (867)
Q Consensus 676 ~~~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lfHIDFG~ilg~ 748 (867)
+.+..++|-+-++++..+.|+||.-|=|.+|| |..-++-+=||+--+|..
T Consensus 169 ----------------------~~~e~~~fY~r~G~llal~y~L~~tD~H~ENi-IA~g~~PvlIDlETlf~~ 218 (825)
T cd04792 169 ----------------------SKEEVERYYYRLGGLLALLYLLNATDLHFENI-IASGEYPVLIDLETLFHP 218 (825)
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHHHHcCCcccchhhh-eeeCCCceEEeeHHhcCC
Confidence 12457888899999999999999999999999 665578888998777654
No 165
>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process
Probab=77.81 E-value=24 Score=37.82 Aligned_cols=126 Identities=17% Similarity=0.283 Sum_probs=67.9
Q ss_pred eeeecCCCcceEEEEEecCCCeEEEEEeeC--CchhhHHHHHHH------HHHHHHHHH--hCCCCCcccccEEEEe---
Q psy10441 589 ATLFKSNLMPSRLTFLTTTGTEYVAIFKHG--DDLRQDQLILQI------ITLMDKLLR--SENLDLKLTPYRVLAT--- 655 (867)
Q Consensus 589 ~~v~~S~~~P~~l~f~~~dG~~~~~i~K~G--DDLRqD~l~lQl------i~lmd~ll~--~~~ldl~l~~Y~Vip~--- 655 (867)
+.|+++..+- .+.....||+ .+|+|.- .+-|...+.+-+ -+++.++.+ .+|+.-...+|-+.--
T Consensus 36 ~kv~k~~~r~-~ValIei~~~--kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~~ekk~~ 112 (229)
T PF06176_consen 36 IKVFKNTKRN-YVALIEIDGK--KYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLAAEKKIF 112 (229)
T ss_pred EEeecCCCcc-EEEEEEECCc--EEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceeeeeeeec
Confidence 4566665432 3344455664 4588875 566666555543 244444433 4455433333433221
Q ss_pred --cCCc-ceeeeecCccHHHHHhhc----CcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcc
Q psy10441 656 --NTKH-GFVQFVDSFPVAEVLATE----GSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDN 728 (867)
Q Consensus 656 --~~~~-GlIE~V~s~tl~~I~~~~----~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dN 728 (867)
.... =++|+|+.+++.++..-. ..+.+++++.+.. +. ==||=|++|
T Consensus 113 ~~~~~~~ll~EYIeG~~l~d~~~i~e~~~~ki~~~ikqlH~~--G~-------------------------~HGD~hpgN 165 (229)
T PF06176_consen 113 RYTSSYVLLMEYIEGVELNDIEDIDEDLAEKIVEAIKQLHKH--GF-------------------------YHGDPHPGN 165 (229)
T ss_pred cceeEEEEEEEEecCeecccchhcCHHHHHHHHHHHHHHHHc--CC-------------------------ccCCCCcCc
Confidence 1122 278999877665543111 1233444332211 11 139999999
Q ss_pred eeEecCCCEEEEeeccc
Q psy10441 729 LLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 729 Ili~~tG~lfHIDFG~i 745 (867)
++++++| +.=|||+..
T Consensus 166 Flv~~~~-i~iID~~~k 181 (229)
T PF06176_consen 166 FLVSNNG-IRIIDTQGK 181 (229)
T ss_pred EEEECCc-EEEEECccc
Confidence 9999655 999999654
No 166
>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Probab=74.37 E-value=49 Score=36.24 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.9
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=.++||||+.+|++.=+|||..-
T Consensus 120 ~Dlkp~NIll~~~~~~kl~Dfg~~~ 144 (321)
T cd05603 120 RDLKPENILLDSQGHVVLTDFGLCK 144 (321)
T ss_pred ccCCHHHeEECCCCCEEEccCCCCc
Confidence 7899999999999999999999753
No 167
>KOG1030|consensus
Probab=73.73 E-value=8.4 Score=39.15 Aligned_cols=66 Identities=24% Similarity=0.263 Sum_probs=45.2
Q ss_pred cceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEce
Q psy10441 56 ADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLF 131 (867)
Q Consensus 56 ~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LF 131 (867)
+|=||..+ .|++.+- .++-++. -++.|||-++|+|+=.. .-|.++|||-..-+..-.+|.++|+|=
T Consensus 27 SDPyVVl~--lg~q~lk--T~~v~~n--~NPeWNe~ltf~v~d~~----~~lkv~VyD~D~fs~dD~mG~A~I~l~ 92 (168)
T KOG1030|consen 27 SDPYVVLE--LGNQKLK--TRVVYKN--LNPEWNEELTFTVKDPN----TPLKVTVYDKDTFSSDDFMGEATIPLK 92 (168)
T ss_pred CCCeEEEE--ECCeeee--eeeecCC--CCCcccceEEEEecCCC----ceEEEEEEeCCCCCcccccceeeeccH
Confidence 44466554 3565552 2333443 35889999999987554 457899999776556668999999873
No 168
>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal
Probab=71.69 E-value=51 Score=36.21 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.9
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=+++||||+.+|.+.-+|||..-
T Consensus 120 ~dlkp~NIli~~~~~~kL~DfG~~~ 144 (320)
T cd05590 120 RDLKLDNVLLDHEGHCKLADFGMCK 144 (320)
T ss_pred CCCCHHHeEECCCCcEEEeeCCCCe
Confidence 8999999999999999999999753
No 169
>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane
Probab=68.70 E-value=18 Score=37.69 Aligned_cols=99 Identities=13% Similarity=0.171 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCcccccEEEEecCC-cc-------eeeeec-CccHHHHHhhcCcHHHHHHhhCCCCCCCCC
Q psy10441 626 LILQIITLMDKLLRSENLDLKLTPYRVLATNTK-HG-------FVQFVD-SFPVAEVLATEGSIQNFFRKHHPSDNGPYG 696 (867)
Q Consensus 626 l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~-~G-------lIE~V~-s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~ 696 (867)
++.+=++.+..+. +.|+ .+..+++.+.. .| +.|.++ +.+|.+++..... .
T Consensus 57 ra~~E~~~~~~L~-~~Gi----~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~---------~------- 115 (206)
T PF06293_consen 57 RAKREWRNLQRLR-EAGI----PTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQ---------L------- 115 (206)
T ss_pred HHHHHHHHHHHHH-HcCC----CCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcc---------c-------
Confidence 3444445554544 3443 45566665543 11 356666 6677776654211 1
Q ss_pred CcHHHHHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCC---CEEEEeecccc
Q psy10441 697 ISSEIMDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSG---KLFHIDFGYIL 746 (867)
Q Consensus 697 ~~~~a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG---~lfHIDFG~il 746 (867)
.....+.+++.+|.+-.--+-.|| ||=|+.|||++.++ +++=|||+-+-
T Consensus 116 -~~~~~~~ll~~l~~~i~~lH~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~ 169 (206)
T PF06293_consen 116 -DPSQRRELLRALARLIAKLHDAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMR 169 (206)
T ss_pred -chhhHHHHHHHHHHHHHHHHHCcCCCCCCCcccEEEeCCCCceeEEEEcchhce
Confidence 123578888888888888888887 89999999999877 89999998653
No 170
>PRK14879 serine/threonine protein kinase; Provisional
Probab=68.20 E-value=46 Score=33.90 Aligned_cols=63 Identities=22% Similarity=0.453 Sum_probs=39.8
Q ss_pred eeeeecCccHHHHHhhcCcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCCCEE
Q psy10441 661 FVQFVDSFPVAEVLATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSGKLF 738 (867)
Q Consensus 661 lIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG~lf 738 (867)
++|+++..++.+++..... .+......++.....-+-.|+ ||-|++|||++ +|.+.
T Consensus 77 v~e~~~G~~L~~~~~~~~~---------------------~~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~-~~~~~ 134 (211)
T PRK14879 77 VMEYIEGEPLKDLINSNGM---------------------EELELSREIGRLVGKLHSAGIIHGDLTTSNMILS-GGKIY 134 (211)
T ss_pred EEEEeCCcCHHHHHHhccH---------------------HHHHHHHHHHHHHHHHHhCCcccCCCCcccEEEE-CCCEE
Confidence 4678888888776643210 122333333332222233344 89999999999 89999
Q ss_pred EEeeccc
Q psy10441 739 HIDFGYI 745 (867)
Q Consensus 739 HIDFG~i 745 (867)
=||||..
T Consensus 135 liDf~~a 141 (211)
T PRK14879 135 LIDFGLA 141 (211)
T ss_pred EEECCcc
Confidence 9999975
No 171
>KOG0667|consensus
Probab=67.93 E-value=22 Score=42.88 Aligned_cols=116 Identities=22% Similarity=0.309 Sum_probs=73.8
Q ss_pred EEeeC-CchhhHHHHHHHHHHHHHHHHhCCCCCcccccEEEEecCCcceeeeecCccHHHHHhhcCcHHHHHHhhCCCCC
Q psy10441 614 IFKHG-DDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVDSFPVAEVLATEGSIQNFFRKHHPSDN 692 (867)
Q Consensus 614 i~K~G-DDLRqD~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~~~GlIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~ 692 (867)
|+|+. +=.||-+--+-++..|++ ...++-.-.++-|.+.-.-...-|+ -|++.. .|.+|++.+...
T Consensus 218 IiKN~k~f~~Q~~~Ei~iL~~ln~-~d~~~~~n~Vrm~d~F~fr~HlciV--------fELL~~--NLYellK~n~f~-- 284 (586)
T KOG0667|consen 218 IIKNKKRFLRQAQIEIRILELLNK-HDPDDKYNIVRMLDYFYFRNHLCIV--------FELLST--NLYELLKNNKFR-- 284 (586)
T ss_pred eeccChHHHHHHHHHHHHHHHHhc-cCCCCCeeEEEeeeccccccceeee--------ehhhhh--hHHHHHHhcCCC--
Confidence 55654 667777776667776665 3222221122222222222111121 244443 477888765433
Q ss_pred CCCCCcHHHHHHHHHhhhhHHHHHhhhcc--CCCCCcceeEec--CCCEEEEeeccc
Q psy10441 693 GPYGISSEIMDTYVRSCAGYCVITYILGV--GDRHFDNLLLTT--SGKLFHIDFGYI 745 (867)
Q Consensus 693 ~~~~~~~~a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~--tG~lfHIDFG~i 745 (867)
+++....+.|++++.---++-.-+|| +|--++||||.. .-.+==||||..
T Consensus 285 ---Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSS 338 (586)
T KOG0667|consen 285 ---GLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSS 338 (586)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEecccc
Confidence 45567899999999988888888998 899999999984 457888999975
No 172
>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt
Probab=67.61 E-value=87 Score=34.37 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.9
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+|-.++||||+++|.+.=+|||..-
T Consensus 120 rDlkp~Nili~~~~~~kl~DfG~a~ 144 (325)
T cd05602 120 RDLKPENILLDSQGHIVLTDFGLCK 144 (325)
T ss_pred cCCCHHHeEECCCCCEEEccCCCCc
Confidence 7999999999999999999999763
No 173
>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,
Probab=67.27 E-value=93 Score=34.12 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=30.4
Q ss_pred HHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCCCEEEEeecccc
Q psy10441 702 MDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 702 ~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
...++..++----.-+=.|| ||=+++||||+.+|++.=+|||..-
T Consensus 98 ~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~ 144 (325)
T cd05604 98 ARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCK 144 (325)
T ss_pred HHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcc
Confidence 34444444432222233444 6889999999999999999999863
No 174
>KOG0608|consensus
Probab=66.97 E-value=4.9 Score=48.42 Aligned_cols=40 Identities=30% Similarity=0.365 Sum_probs=29.3
Q ss_pred hhhhHHHHHhhhccCCCCCcceeEecCCCEEEEeeccccC
Q psy10441 708 SCAGYCVITYILGVGDRHFDNLLLTTSGKLFHIDFGYILG 747 (867)
Q Consensus 708 S~A~ysv~tYiLGIGDRH~dNIli~~tG~lfHIDFG~ilg 747 (867)
.||.=||--.=+==.|=-+||||||.+||+=-.|||.+-|
T Consensus 739 tcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLCTG 778 (1034)
T KOG0608|consen 739 TCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTG 778 (1034)
T ss_pred HHHHHHHHhccceecccCccceEEccCCceeeeecccccc
Confidence 3454444332222347789999999999999999999966
No 175
>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=66.49 E-value=1.1e+02 Score=32.66 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=22.0
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=.++||+++.+|.+.=+|||..-
T Consensus 156 ~dlkp~Nil~~~~~~~kL~Dfg~~~ 180 (293)
T cd05053 156 RDLAARNVLVTEDHVMKIADFGLAR 180 (293)
T ss_pred cccceeeEEEcCCCeEEeCcccccc
Confidence 5777899999999999999999764
No 176
>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul
Probab=65.94 E-value=68 Score=35.81 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=23.1
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+|=+++||||+.+|++.-+|||..-
T Consensus 125 rDLkp~NIli~~~~~vkL~DfG~~~ 149 (360)
T cd05627 125 RDIKPDNLLLDAKGHVKLSDFGLCT 149 (360)
T ss_pred cCCCHHHEEECCCCCEEEeeccCCc
Confidence 7889999999999999999999864
No 177
>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t
Probab=65.78 E-value=1.7e+02 Score=30.32 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=22.6
Q ss_pred CCCCCcceeEecCCCEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
||=+++||+++.+|++.=+|||..
T Consensus 128 ~dl~p~nilv~~~~~~~l~dfg~~ 151 (263)
T cd06625 128 RDIKGANILRDSAGNVKLGDFGAS 151 (263)
T ss_pred CCCCHHHEEEcCCCCEEEeecccc
Confidence 899999999999999999999975
No 178
>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=64.99 E-value=2.1e+02 Score=30.96 Aligned_cols=47 Identities=17% Similarity=0.034 Sum_probs=31.5
Q ss_pred HHHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCCCEEEEeeccccC
Q psy10441 701 IMDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSGKLFHIDFGYILG 747 (867)
Q Consensus 701 a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG~lfHIDFG~ilg 747 (867)
....++..++.-.-.-+=.|| ||=.++||||+++|.+.=+|||..-+
T Consensus 125 ~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~~~kl~dfg~~~~ 173 (303)
T cd05088 125 QLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRG 173 (303)
T ss_pred HHHHHHHHHHHHHHHHHhCCccccccchheEEecCCCcEEeCccccCcc
Confidence 344444444432222233444 78889999999999999999998754
No 179
>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po
Probab=64.63 E-value=1e+02 Score=34.84 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=31.3
Q ss_pred HHHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCCCEEEEeeccc
Q psy10441 701 IMDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 701 a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
....++..++.---..+-.|| +|=.++||||+.+|++.=+|||..
T Consensus 102 ~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~ 148 (381)
T cd05626 102 LARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLC 148 (381)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCC
Confidence 344455544433333334555 788999999999999999999975
No 180
>KOG1028|consensus
Probab=64.23 E-value=37 Score=39.74 Aligned_cols=78 Identities=18% Similarity=0.142 Sum_probs=58.8
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEceecC
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFGKY 134 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd~~ 134 (867)
.++=||.+.+.-+-+ .-.+|.-+--+..+.|||.+.|.|.+.+|.. ..|.|+||+...=+...++|-+.++|.+-+
T Consensus 187 ~sdpyVK~~llPdk~---~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~-~~L~l~V~~~drfsr~~~iGev~~~l~~~~ 262 (421)
T KOG1028|consen 187 TSDPYVKVYLLPDKK---GKFKTRVHRKTLNPVFNETFRFEVPYEELSN-RVLHLSVYDFDRFSRHDFIGEVILPLGEVD 262 (421)
T ss_pred CCCCeeEEEEcCCCC---CcceeeeeecCcCCccccceEeecCHHHhcc-CEEEEEEEecCCcccccEEEEEEecCcccc
Confidence 567789888876542 1234554444556889999999999999975 589999999876456789999999987654
Q ss_pred Cc
Q psy10441 135 GV 136 (867)
Q Consensus 135 ~~ 136 (867)
-.
T Consensus 263 ~~ 264 (421)
T KOG1028|consen 263 LL 264 (421)
T ss_pred cc
Confidence 43
No 181
>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr
Probab=64.02 E-value=1.2e+02 Score=33.32 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.8
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=.++||||+.+|.+.-+|||...
T Consensus 120 ~dikp~NIll~~~~~~kl~Dfg~~~ 144 (323)
T cd05575 120 RDLKPENILLDSQGHVVLTDFGLCK 144 (323)
T ss_pred CCCCHHHeEECCCCcEEEeccCCCc
Confidence 7888999999999999999999764
No 182
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=63.76 E-value=20 Score=46.06 Aligned_cols=87 Identities=26% Similarity=0.257 Sum_probs=59.7
Q ss_pred EEEEEeeeecCCCCCchhhhhcCccccccCCccccccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccC
Q psy10441 20 IQIKIGTLEGVTLKPDYEKMLSDPMLKYSGLYQEVCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFS 99 (867)
Q Consensus 20 v~ikI~~LeG~~~~~~~~~~l~~p~l~~~~~~~~~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~ 99 (867)
|-|+|.+.||-...- +-.++..|=||+.+ +++--.= +|+-+.-.-++.|||.+-.||.
T Consensus 438 v~vkI~sa~~lk~~d---------------~~i~~~vDpyit~~-~~~r~~g----kT~v~~nt~nPvwNEt~Yi~ln-- 495 (1227)
T COG5038 438 VEVKIKSAEGLKKSD---------------STINGTVDPYITVT-FSDRVIG----KTRVKKNTLNPVWNETFYILLN-- 495 (1227)
T ss_pred EEEEEeeccCccccc---------------ccccCCCCceEEEE-eccccCC----ccceeeccCCccccceEEEEec--
Confidence 688999999954422 12234556688888 5542221 3444444446889999999988
Q ss_pred CcCccceEEEEEEEecCCCCceeEEEEEEEc
Q psy10441 100 DLPRNAILALTIYDCGGATQLIPIGGTCISL 130 (867)
Q Consensus 100 dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~L 130 (867)
..+..|.+.+||-........+|.+-+.|
T Consensus 496 --s~~d~L~LslyD~n~~~sd~vvG~~~l~L 524 (1227)
T COG5038 496 --SFTDPLNLSLYDFNSFKSDKVVGSTQLDL 524 (1227)
T ss_pred --ccCCceeEEEEeccccCCcceeeeEEech
Confidence 78889999999965555567788887765
No 183
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=63.38 E-value=4.3 Score=48.78 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=22.7
Q ss_pred CCCCCcceeEecCC----CEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSG----KLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG----~lfHIDFG~i 745 (867)
+|=|++||+++.+| +++=+|||.+
T Consensus 284 aDpHPGNIlv~~~g~~~~~i~llDFGiv 311 (537)
T PRK04750 284 ADMHPGNIFVSYDPPENPRYIALDFGIV 311 (537)
T ss_pred CCCChHHeEEecCCCCCCeEEEEecceE
Confidence 89999999999888 9999999987
No 184
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=62.38 E-value=5.2 Score=42.93 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=21.6
Q ss_pred CCCCCcceeEecCCCEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
||=|++|||++++| +.=||||..
T Consensus 159 ~Dikp~Nili~~~g-i~liDfg~~ 181 (232)
T PRK10359 159 GDPHKGNFIVSKNG-LRIIDLSGK 181 (232)
T ss_pred CCCChHHEEEeCCC-EEEEECCCc
Confidence 79999999999999 999999876
No 185
>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1. Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto
Probab=62.05 E-value=61 Score=34.01 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=23.7
Q ss_pred cCCCCCcceeEecCCCEEEEeecccc
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~il 746 (867)
-||=+++||+++.+|++..+|||...
T Consensus 125 H~dl~~~ni~i~~~~~~~l~df~~~~ 150 (280)
T cd05581 125 HRDLKPENILLDKDMHIKITDFGTAK 150 (280)
T ss_pred ecCCCHHHeEECCCCCEEecCCcccc
Confidence 37999999999999999999999875
No 186
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=62.03 E-value=13 Score=34.13 Aligned_cols=70 Identities=20% Similarity=0.204 Sum_probs=51.7
Q ss_pred cccceEEEEEEEECCeeeecce--ecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEce
Q psy10441 54 VCADLVVFCQIFSDGVPLSLPI--SSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLF 131 (867)
Q Consensus 54 ~~~~l~V~~ql~~g~~~L~~pv--~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LF 131 (867)
..+.+||..-|- |..|| .|+.+-..+.+.+.|.+.|.|+.-+|+. ..|.|.||.. - .+...+||.+++|=
T Consensus 19 e~~~i~ikg~~t-----l~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~-V~L~fsv~~~-~-~RKe~iG~~sL~l~ 90 (103)
T cd08684 19 ENPTIYIKGILT-----LPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQT-VRLVFKIQTQ-T-PRKRTIGECSLSLR 90 (103)
T ss_pred cCCeeEEEEEEe-----cCCCccccchhhcCCCChhHHHHHHHHHHHhhccc-eEEEEEeecc-C-CccceeeEEEeecc
Confidence 346788876543 33344 4666667778999999999999999985 6899999982 2 23457999998874
No 187
>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C. Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory
Probab=60.50 E-value=1.4e+02 Score=32.67 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=22.4
Q ss_pred CCCCCcceeEecCCCEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
||=+++|||++.+|.+.-+|||..
T Consensus 125 ~dlkp~Nill~~~~~~kL~Dfg~~ 148 (324)
T cd05587 125 RDLKLDNVMLDAEGHIKIADFGMC 148 (324)
T ss_pred cCCCHHHeEEcCCCCEEEeecCcc
Confidence 789999999999999999999975
No 188
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=60.26 E-value=7 Score=38.28 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=23.3
Q ss_pred hccCCCCCcceeEecCCCEEEEeecccc
Q psy10441 719 LGVGDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 719 LGIGDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+-=||=|++|||++ +|++.-||||+.-
T Consensus 109 ~~HgD~~~~Nil~~-~~~~~liDf~~a~ 135 (170)
T cd05151 109 PCHNDLLPGNFLLD-DGRLWLIDWEYAG 135 (170)
T ss_pred eecCCCCcCcEEEE-CCeEEEEeccccc
Confidence 34499999999999 7889999999864
No 189
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=59.56 E-value=6.4 Score=46.09 Aligned_cols=24 Identities=33% Similarity=0.713 Sum_probs=22.9
Q ss_pred CCCCCcceeEecCCCEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
||=|++|||++++|++.=+|||..
T Consensus 281 ~D~hPgNilv~~~g~i~liDfG~~ 304 (437)
T TIGR01982 281 ADLHPGNIFVLKDGKIIALDFGIV 304 (437)
T ss_pred CCCCcccEEECCCCcEEEEeCCCe
Confidence 699999999999999999999987
No 190
>KOG0610|consensus
Probab=59.44 E-value=56 Score=37.91 Aligned_cols=90 Identities=16% Similarity=0.271 Sum_probs=56.7
Q ss_pred CCCcccccEEEEecCCcce-eeeecCccHHHHHhhcCcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHH--hhh
Q psy10441 643 LDLKLTPYRVLATNTKHGF-VQFVDSFPVAEVLATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVIT--YIL 719 (867)
Q Consensus 643 ldl~l~~Y~Vip~~~~~Gl-IE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~t--YiL 719 (867)
-.+-.+-|..+-+..-.++ ||+.+.--|+.+..+. |+ ..+. .++.+=|+.-. -+.+- ++|
T Consensus 136 HPFlPTLYa~fet~~~~cl~meyCpGGdL~~LrqkQ-----------p~--~~fs--e~~aRFYaAEv--l~ALEYLHml 198 (459)
T KOG0610|consen 136 HPFLPTLYASFETDKYSCLVMEYCPGGDLHSLRQKQ-----------PG--KRFS--ESAARFYAAEV--LLALEYLHML 198 (459)
T ss_pred CCccchhhheeeccceeEEEEecCCCccHHHHHhhC-----------CC--Cccc--hhhHHHHHHHH--HHHHHHHHhh
Confidence 3455667999999887766 7888765555444332 21 1121 12222222221 22233 457
Q ss_pred cc--CCCCCcceeEecCCCEEEEeeccccCCC
Q psy10441 720 GV--GDRHFDNLLLTTSGKLFHIDFGYILGRD 749 (867)
Q Consensus 720 GI--GDRH~dNIli~~tG~lfHIDFG~ilg~~ 749 (867)
|| .|--++||||.++||+.-.||...+-..
T Consensus 199 GivYRDLKPENILvredGHIMLsDFDLS~~~~ 230 (459)
T KOG0610|consen 199 GIVYRDLKPENILVREDGHIMLSDFDLSLRCP 230 (459)
T ss_pred ceeeccCCcceeEEecCCcEEeeeccccccCC
Confidence 77 4888999999999999999999887654
No 191
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=59.08 E-value=60 Score=31.39 Aligned_cols=94 Identities=16% Similarity=0.221 Sum_probs=56.6
Q ss_pred ccEEEEEeeeecCCCCCchhhhhcCccccccCCccccccceEEEEEEEECCeeeecceeccccc-CCCCccccceEEecc
Q psy10441 18 AKIQIKIGTLEGVTLKPDYEKMLSDPMLKYSGLYQEVCADLVVFCQIFSDGVPLSLPISSSYKS-FTNRWDWNEWITIPL 96 (867)
Q Consensus 18 ~~v~ikI~~LeG~~~~~~~~~~l~~p~l~~~~~~~~~~~~l~V~~ql~~g~~~L~~pv~T~~~~-f~~~~~Wnewl~fpI 96 (867)
..+.|.|..|+|... ....|.+..--|++..+ ...|...+ ......|||-+.+++
T Consensus 7 f~~~l~i~~l~~~p~-----------------------~~~~v~v~wkr~~~~~~-~~~t~~~~~~~~~v~w~e~~~~~~ 62 (143)
T PF10358_consen 7 FQFDLTIHELENLPS-----------------------SNGKVFVKWKRGDKSKG-SGTTSRANVKNGKVQWNEEFSFPC 62 (143)
T ss_pred EEEEEEEEEeECcCC-----------------------CCCEEEEEEEECCCCcc-ceeeeeeeccccEEEEeeEEEEEE
Confidence 356788888888422 12333344334444432 22333333 345688999999996
Q ss_pred ccCC----c-CccceEEEEEEEecCCCCceeEEEEEEEceecCC
Q psy10441 97 MFSD----L-PRNAILALTIYDCGGATQLIPIGGTCISLFGKYG 135 (867)
Q Consensus 97 ~~~d----L-Pr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd~~~ 135 (867)
.+-- - -.+-.+.|+|+...+.++...+|.++|.|=++-+
T Consensus 63 tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~ 106 (143)
T PF10358_consen 63 TLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYAN 106 (143)
T ss_pred EEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhC
Confidence 5532 1 3455789999988543343688999988866533
No 192
>KOG0696|consensus
Probab=59.07 E-value=12 Score=43.11 Aligned_cols=75 Identities=20% Similarity=0.183 Sum_probs=52.0
Q ss_pred ccccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEc
Q psy10441 53 EVCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISL 130 (867)
Q Consensus 53 ~~~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~L 130 (867)
++-+|=||.+++.-+.+..+.. .|...--+=++.|||.++|.++=+| ++-+|.+.|||-...+..-..|..++.+
T Consensus 198 NGlSDPYvk~kliPD~~~~sKq-KTkTik~~LNP~wNEtftf~Lkp~D--kdrRlsiEvWDWDrTsRNDFMGslSFgi 272 (683)
T KOG0696|consen 198 NGLSDPYVKLKLIPDPKNESKQ-KTKTIKATLNPVWNETFTFKLKPSD--KDRRLSIEVWDWDRTSRNDFMGSLSFGI 272 (683)
T ss_pred CCCCCcceeEEeccCCcchhhh-hhhhhhhhcCccccceeEEeccccc--ccceeEEEEecccccccccccceecccH
Confidence 4567889999998876666543 2322222335779999999998887 5668999999977655555667655444
No 193
>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and
Probab=59.06 E-value=1.3e+02 Score=32.89 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.9
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+|=.++||||+++|++--+|||..-
T Consensus 125 rDlkp~Nill~~~~~~kL~DfG~~~ 149 (323)
T cd05616 125 RDLKLDNVMLDSEGHIKIADFGMCK 149 (323)
T ss_pred cCCCHHHeEECCCCcEEEccCCCce
Confidence 7889999999999999999999764
No 194
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=58.62 E-value=7.1 Score=39.87 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.8
Q ss_pred hcc--CCCCCcceeEecCCCEEEEeecccc
Q psy10441 719 LGV--GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 719 LGI--GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
-|| +|=|++|||++ +|++.=||||..-
T Consensus 137 ~givHrDlkP~NIll~-~~~~~liDFG~a~ 165 (190)
T cd05145 137 AGLVHGDLSEYNILYH-DGKPYIIDVSQAV 165 (190)
T ss_pred CCEecCCCChhhEEEE-CCCEEEEEcccce
Confidence 455 89999999999 8999999999874
No 195
>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the
Probab=57.80 E-value=98 Score=34.08 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=23.0
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=.++||||+++|++.-+|||..-
T Consensus 125 ~Dlkp~NIll~~~~~~kL~Dfg~~~ 149 (350)
T cd05573 125 RDIKPDNILIDADGHIKLADFGLCK 149 (350)
T ss_pred cCCCHHHeEECCCCCEEeecCCCCc
Confidence 7888999999999999999999874
No 196
>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin
Probab=57.73 E-value=2.7e+02 Score=30.10 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=24.8
Q ss_pred cCCCCCcceeEecCCCEEEEeeccccCC
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYILGR 748 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~ilg~ 748 (867)
-||=+++||||+.+|++.=+|||.....
T Consensus 126 H~dlkp~Nili~~~~~~~l~dfg~~~~~ 153 (316)
T cd05574 126 YRDLKPENILLHESGHIMLSDFDLSKQS 153 (316)
T ss_pred ccCCChHHeEEcCCCCEEEeecchhhcc
Confidence 4899999999999999999999987543
No 197
>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways
Probab=57.59 E-value=1.8e+02 Score=31.99 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.9
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+|=.++||||+.+|++.-+|||...
T Consensus 120 rDlkp~Nili~~~~~~kl~Dfg~~~ 144 (327)
T cd05617 120 RDLKLDNVLLDADGHIKLTDYGMCK 144 (327)
T ss_pred cCCCHHHEEEeCCCCEEEeccccce
Confidence 7888999999999999999999764
No 198
>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase. Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor
Probab=57.19 E-value=2.1e+02 Score=31.24 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=22.7
Q ss_pred CCCCCcceeEecCCCEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
||=+++||||+.+|++.=+|||..
T Consensus 126 ~Dlkp~NIll~~~~~~kL~Dfg~a 149 (330)
T cd05601 126 RDIKPENVLIDRTGHIKLADFGSA 149 (330)
T ss_pred ccCchHheEECCCCCEEeccCCCC
Confidence 789999999999999999999976
No 199
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=57.14 E-value=7.1 Score=40.19 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=23.9
Q ss_pred hcc--CCCCCcceeEecCCCEEEEeecccc
Q psy10441 719 LGV--GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 719 LGI--GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
.|| ||=|++|||++ +|++.=||||..-
T Consensus 137 ~giiHrDlkP~NIli~-~~~v~LiDFG~a~ 165 (190)
T cd05147 137 CRLVHADLSEYNLLYH-DGKLYIIDVSQSV 165 (190)
T ss_pred CCcccCCCCHHHEEEE-CCcEEEEEccccc
Confidence 367 89999999998 5999999999875
No 200
>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus
Probab=57.13 E-value=1.4e+02 Score=33.45 Aligned_cols=27 Identities=44% Similarity=0.619 Sum_probs=23.9
Q ss_pred hcc--CCCCCcceeEecCCCEEEEeeccc
Q psy10441 719 LGV--GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 719 LGI--GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
.|| +|=.++||||+.+|++.=+|||..
T Consensus 120 ~givHrDlKp~NILi~~~~~vkL~DFGla 148 (363)
T cd05628 120 LGFIHRDIKPDNLLLDSKGHVKLSDFGLC 148 (363)
T ss_pred CCeEecCCCHHHeEECCCCCEEEeeccCc
Confidence 454 788999999999999999999976
No 201
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=55.88 E-value=11 Score=32.95 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=35.9
Q ss_pred HHHHHHHHhhccCCCC-HhhHhhccCCCCCCHHHHHHHHHHhccCCchhHHHHHHHHHHHhccc
Q psy10441 344 EARQALDLLDQWAPMD-VEDSLQLLSPAFKHSAVRRYAVTRLQQASDEDLLLYLLQLVQALKYE 406 (867)
Q Consensus 344 e~~~a~~lL~~W~~i~-~~~ALeLL~~~f~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE 406 (867)
-...|...|.+..... ...-+++|. =.|+.||..|+..|..+.+++ .+++|+++++-+
T Consensus 16 vr~~a~~~L~~~~~~~~~~~L~~~l~--d~~~~vr~~a~~aL~~i~~~~---~~~~L~~~l~~~ 74 (88)
T PF13646_consen 16 VRAEAARALGELGDPEAIPALIELLK--DEDPMVRRAAARALGRIGDPE---AIPALIKLLQDD 74 (88)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHT--SSSHHHHHHHHHHHHCCHHHH---THHHHHHHHTC-
T ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCHH---HHHHHHHHHcCC
Confidence 3344556666433222 222234452 378999999999999998766 556677777654
No 202
>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.
Probab=55.61 E-value=1.4e+02 Score=33.46 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=24.1
Q ss_pred hcc--CCCCCcceeEecCCCEEEEeeccc
Q psy10441 719 LGV--GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 719 LGI--GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
.|| ||=.++||||+.+|++.-+|||..
T Consensus 120 ~~ivHrDlkp~Nill~~~~~ikL~DFG~a 148 (376)
T cd05598 120 MGFIHRDIKPDNILIDRDGHIKLTDFGLC 148 (376)
T ss_pred CCeEeCCCCHHHEEECCCCCEEEEeCCCC
Confidence 454 899999999999999999999985
No 203
>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of
Probab=55.11 E-value=1.8e+02 Score=31.89 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=23.9
Q ss_pred hcc--CCCCCcceeEecCCCEEEEeeccc
Q psy10441 719 LGV--GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 719 LGI--GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
.|| +|=.++||||+.+|++.=+|||..
T Consensus 115 ~~ivHrDlkp~Nili~~~~~~kl~Dfg~a 143 (330)
T cd05586 115 YDIVYRDLKPENILLDATGHIALCDFGLS 143 (330)
T ss_pred CCeEeccCCHHHeEECCCCCEEEecCCcC
Confidence 454 788999999999999999999975
No 204
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=55.06 E-value=34 Score=32.47 Aligned_cols=69 Identities=23% Similarity=0.382 Sum_probs=44.7
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEceecC
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFGKY 134 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd~~ 134 (867)
.++=||.+-+ |+...+ +|. + +.+..|||-+.||| | ..-.+-|+|||-.+ +...|||=.=++|.|=-
T Consensus 22 ~~etyV~IKv--ed~~ka---RTr--~-srnd~WnE~F~i~V---d--k~nEiel~VyDk~~-~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 22 RPETYVSIKV--EDVERA---RTK--P-SRNDRWNEDFEIPV---E--KNNEEEVIVYDKGG-DQPVPVGLLWLRLSDIA 87 (109)
T ss_pred CCCcEEEEEE--CCEEEE---ecc--C-CCCCcccceEEEEe---c--CCcEEEEEEEeCCC-CeecceeeehhhHHHHH
Confidence 4566776653 333332 222 1 24577999988888 3 47899999999755 46689997767777643
Q ss_pred Ccc
Q psy10441 135 GVF 137 (867)
Q Consensus 135 ~~L 137 (867)
..+
T Consensus 88 Ee~ 90 (109)
T cd08689 88 EEI 90 (109)
T ss_pred HHH
Confidence 333
No 205
>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=53.71 E-value=2.3e+02 Score=30.46 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.8
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+|-.++||+|+.+|.+.=+|||..-
T Consensus 161 ~dlkp~Nili~~~~~~kl~D~g~~~ 185 (304)
T cd05101 161 RDLAARNVLVTENNVMKIADFGLAR 185 (304)
T ss_pred cccccceEEEcCCCcEEECCCccce
Confidence 7889999999999999999999864
No 206
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=53.17 E-value=19 Score=25.14 Aligned_cols=26 Identities=38% Similarity=0.463 Sum_probs=19.1
Q ss_pred HHHHHHHHhccCCchhHHHHHHHHHHHhc
Q psy10441 376 VRRYAVTRLQQASDEDLLLYLLQLVQALK 404 (867)
Q Consensus 376 VR~yAV~~L~~~~d~eL~~yLlQLVQaLk 404 (867)
||.+|+..|-++.|++ .++-|+++|+
T Consensus 1 VR~~Aa~aLg~igd~~---ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPR---AIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHH---HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHH---HHHHHHHHhc
Confidence 8999999999999955 4555666554
No 207
>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=52.76 E-value=2.2e+02 Score=30.95 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.3
Q ss_pred CCCCCcceeEecCCCEEEEeeccccC
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYILG 747 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~ilg 747 (867)
||=.++|||++.+|++.=+|||..-.
T Consensus 158 ~dlkp~Nill~~~~~~kL~Dfg~~~~ 183 (314)
T cd05099 158 RDLAARNVLVTEDNVMKIADFGLARG 183 (314)
T ss_pred ccccceeEEEcCCCcEEEcccccccc
Confidence 78889999999999999999998753
No 208
>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to
Probab=52.57 E-value=2.4e+02 Score=30.84 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.4
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=.++|||++.+|++.-+|||..-
T Consensus 120 rDikp~Nill~~~~~~kL~Dfg~~~ 144 (321)
T cd05591 120 RDLKLDNILLDAEGHCKLADFGMCK 144 (321)
T ss_pred cCCCHHHeEECCCCCEEEeecccce
Confidence 7888899999999999999999753
No 209
>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina
Probab=51.96 E-value=28 Score=36.64 Aligned_cols=46 Identities=17% Similarity=0.080 Sum_probs=31.4
Q ss_pred HHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCCCEEEEeeccccC
Q psy10441 702 MDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSGKLFHIDFGYILG 747 (867)
Q Consensus 702 ~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG~lfHIDFG~ilg 747 (867)
...++..+|.-.-.-+=.|| +|=+++||+++.+|.+.-+|||....
T Consensus 102 ~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~ 149 (269)
T cd05042 102 LQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALE 149 (269)
T ss_pred HHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEeccccccc
Confidence 33444444332223334455 78899999999999999999998643
No 210
>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl
Probab=51.34 E-value=2.5e+02 Score=30.94 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=31.9
Q ss_pred HHHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCCCEEEEeecccc
Q psy10441 701 IMDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 701 a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
....++..++--.-.-+-.|| ||=+++||||+.+|.+.=+|||..-
T Consensus 97 ~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~ 144 (329)
T cd05588 97 HARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCK 144 (329)
T ss_pred HHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCcccc
Confidence 344455544433333334455 8899999999999999999999764
No 211
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=51.20 E-value=1.4e+02 Score=31.13 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=22.6
Q ss_pred CCCCCcceeEecCCCEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
||-+++|||++++|.+.=+|||..
T Consensus 126 ~dl~~~Nill~~~~~~~l~dfg~~ 149 (260)
T cd05069 126 RDLRAANILVGDNLVCKIADFGLA 149 (260)
T ss_pred cccCcceEEEcCCCeEEECCCccc
Confidence 899999999999999999999987
No 212
>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase. Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ
Probab=51.19 E-value=2.8e+02 Score=28.90 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=23.1
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+|=+++||+++++|.+.-+|||...
T Consensus 135 ~dl~~~nili~~~~~~~l~Dfg~~~ 159 (272)
T cd06637 135 RDIKGQNVLLTENAEVKLVDFGVSA 159 (272)
T ss_pred CCCCHHHEEECCCCCEEEccCCCce
Confidence 7889999999999999999999874
No 213
>KOG0616|consensus
Probab=50.85 E-value=9.5 Score=42.30 Aligned_cols=34 Identities=29% Similarity=0.543 Sum_probs=28.4
Q ss_pred HHHHHhhhcc----CCCCCcceeEecCCCEEEEeeccc
Q psy10441 712 YCVITYILGV----GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 712 ysv~tYiLGI----GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
.|.+-|+=+. .|--++|||||++||+=-+||||.
T Consensus 154 vlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFA 191 (355)
T KOG0616|consen 154 VLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFA 191 (355)
T ss_pred HHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccce
Confidence 4556676554 588999999999999999999997
No 214
>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,
Probab=50.16 E-value=2.2e+02 Score=31.29 Aligned_cols=66 Identities=29% Similarity=0.327 Sum_probs=39.5
Q ss_pred HHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCCCEEEEeeccccC--CCCC-----CCCCcccccHHHHHHh
Q psy10441 702 MDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSGKLFHIDFGYILG--RDPK-----PLPPPMKLSKEMVEAM 767 (867)
Q Consensus 702 ~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG~lfHIDFG~ilg--~~~k-----~e~vPFrLT~~mv~~m 767 (867)
...++..++.---..+=.|| ||=.++||||+.+|++.=+|||.... .... ..-.|.=+.||++..+
T Consensus 104 ~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 178 (331)
T cd05597 104 ARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAM 178 (331)
T ss_pred HHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCceeecCCCCCccccceeccccccCHHHHhhc
Confidence 34444444432222233444 78899999999999999999997532 1111 1123344678887654
No 215
>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o
Probab=49.35 E-value=3.2e+02 Score=30.05 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.9
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=.++||||+.+|++-=+|||..-
T Consensus 120 ~Dikp~Nili~~~~~~kL~DfG~~~ 144 (329)
T cd05618 120 RDLKLDNVLLDSEGHIKLTDYGMCK 144 (329)
T ss_pred CCCCHHHEEECCCCCEEEeeCCccc
Confidence 7899999999999999999999763
No 216
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=49.33 E-value=1.8e+02 Score=31.88 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.9
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=.++||||+.+|.+.=+|||..-
T Consensus 158 ~dlkp~Nill~~~~~~kL~Dfg~~~ 182 (334)
T cd05100 158 RDLAARNVLVTEDNVMKIADFGLAR 182 (334)
T ss_pred cccccceEEEcCCCcEEECCcccce
Confidence 5777999999999999999999764
No 217
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=49.00 E-value=16 Score=37.41 Aligned_cols=28 Identities=29% Similarity=0.473 Sum_probs=24.4
Q ss_pred CCCCCcceeEecCCCEEEEeeccccCCC
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYILGRD 749 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~ilg~~ 749 (867)
||=|++||+|+++|.+.=||||....-.
T Consensus 149 ~Dl~p~Nill~~~~~~~liDfg~~~~~~ 176 (198)
T cd05144 149 GDLSEFNILVDDDEKIYIIDWPQMVSTD 176 (198)
T ss_pred CCCCcccEEEcCCCcEEEEECCccccCC
Confidence 5889999999999999999999885443
No 218
>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi
Probab=48.70 E-value=3.5e+02 Score=28.80 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=24.1
Q ss_pred cCCCCCcceeEecCCCEEEEeeccccC
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYILG 747 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~ilg 747 (867)
-||=+++||+|+.+|.+.-+|||..-.
T Consensus 124 H~dl~p~nili~~~~~~kl~dfg~~~~ 150 (290)
T cd05580 124 YRDLKPENLLLDSDGYIKITDFGFAKR 150 (290)
T ss_pred cCCCCHHHEEECCCCCEEEeeCCCccc
Confidence 489999999999999999999998743
No 219
>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be
Probab=48.38 E-value=2.6e+02 Score=30.65 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.7
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=.++||||+.+|.+.=+|||..-
T Consensus 119 rDlkp~NIll~~~~~~kl~DfG~a~ 143 (323)
T cd05571 119 RDLKLENLMLDKDGHIKITDFGLCK 143 (323)
T ss_pred CCCCHHHEEECCCCCEEEeeCCCCc
Confidence 7889999999999999999999753
No 220
>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an
Probab=47.87 E-value=2.5e+02 Score=31.50 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=30.5
Q ss_pred HHHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCCCEEEEeeccc
Q psy10441 701 IMDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 701 a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
....++..++.---..+-.|| +|=.++||||+.+|++.=+|||..
T Consensus 102 ~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla 148 (382)
T cd05625 102 LARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLC 148 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCC
Confidence 344444444432222233444 788999999999999999999975
No 221
>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases. Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core
Probab=47.00 E-value=3.1e+02 Score=27.69 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=34.5
Q ss_pred hccCCCCCcceeEecCCCEEEEeeccccCCCCC-----CCCCcccccHHHHHHh
Q psy10441 719 LGVGDRHFDNLLLTTSGKLFHIDFGYILGRDPK-----PLPPPMKLSKEMVEAM 767 (867)
Q Consensus 719 LGIGDRH~dNIli~~tG~lfHIDFG~ilg~~~k-----~e~vPFrLT~~mv~~m 767 (867)
+--||-+++||+++++|.+.=+|||......+. ....+.-+.||++...
T Consensus 119 i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~ 172 (253)
T cd05122 119 IIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGK 172 (253)
T ss_pred EecCCCCHHHEEEccCCeEEEeeccccccccccccccceecCCcccCHHHHcCC
Confidence 456899999999999999999999987544322 1123334667776543
No 222
>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c
Probab=46.76 E-value=3e+02 Score=28.27 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=22.9
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||-+++|||++.+|.+.=+|||..-
T Consensus 117 ~dl~p~nili~~~~~~~l~d~g~~~ 141 (250)
T cd05085 117 RDLAARNCLVGENNVLKISDFGMSR 141 (250)
T ss_pred cccChheEEEcCCCeEEECCCccce
Confidence 8999999999999999999999763
No 223
>PRK05231 homoserine kinase; Provisional
Probab=46.19 E-value=47 Score=36.55 Aligned_cols=28 Identities=25% Similarity=0.176 Sum_probs=21.7
Q ss_pred hccCCCCCcceeEecCCCEEEEeecccc
Q psy10441 719 LGVGDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 719 LGIGDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+==||=|++|||++.++-..-|||+.+-
T Consensus 189 liHgD~~~~Nil~~~~~~~~iIDf~~~~ 216 (319)
T PRK05231 189 VIHADLFRDNVLFEGDRLSGFIDFYFAC 216 (319)
T ss_pred cCCCCCCCCcEEEECCceEEEEeccccc
Confidence 4459999999999854334699999873
No 224
>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien
Probab=45.22 E-value=3.5e+02 Score=29.56 Aligned_cols=27 Identities=33% Similarity=0.554 Sum_probs=24.0
Q ss_pred hcc--CCCCCcceeEecCCCEEEEeeccc
Q psy10441 719 LGV--GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 719 LGI--GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
.|| +|=.++||||+++|.+.=+|||..
T Consensus 115 ~~ivHrDikp~NIll~~~~~~kL~Dfg~~ 143 (325)
T cd05594 115 KNVVYRDLKLENLMLDKDGHIKITDFGLC 143 (325)
T ss_pred CCEEecCCCCCeEEECCCCCEEEecCCCC
Confidence 355 899999999999999999999975
No 225
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=45.22 E-value=1.4e+02 Score=30.15 Aligned_cols=89 Identities=15% Similarity=0.074 Sum_probs=60.2
Q ss_pred ccceEEEEEEEECC-------eeeecceecccccC---CCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEE
Q psy10441 55 CADLVVFCQIFSDG-------VPLSLPISSSYKSF---TNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIG 124 (867)
Q Consensus 55 ~~~l~V~~ql~~g~-------~~L~~pv~T~~~~f---~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG 124 (867)
.+.|||+.++.+|. ..+.--.++++..- .+...||--+++-.+.....-==+|.|+||....-+.....|
T Consensus 16 ~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~G 95 (168)
T PF07162_consen 16 EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVEG 95 (168)
T ss_pred CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEeE
Confidence 45899999998753 22111123333222 345779999999999988855559999999988767777777
Q ss_pred EEEEEceecCCcccccceee--Eecc
Q psy10441 125 GTCISLFGKYGVFRQGMMDL--KVWP 148 (867)
Q Consensus 125 ~t~i~LFd~~~~Lr~G~~~L--~lwp 148 (867)
-+.+.| -+.-|.+.+ .+|.
T Consensus 96 YG~~~l-----P~~pG~h~~~v~~wr 116 (168)
T PF07162_consen 96 YGFCHL-----PTQPGRHEVEVPTWR 116 (168)
T ss_pred EeEEEe-----CCCCceEEEEEEEEe
Confidence 776666 345677665 4554
No 226
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=44.51 E-value=32 Score=38.37 Aligned_cols=28 Identities=36% Similarity=0.552 Sum_probs=24.5
Q ss_pred hcc--CCCCCcceeEecCCCEEEEeecccc
Q psy10441 719 LGV--GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 719 LGI--GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
.|| +|-.++|||++.+|++.-+|||..-
T Consensus 150 ~~ivHrDLkp~NILl~~~~~ikL~DFG~a~ 179 (340)
T PTZ00426 150 LNIVYRDLKPENLLLDKDGFIKMTDFGFAK 179 (340)
T ss_pred CCeEccCCCHHHEEECCCCCEEEecCCCCe
Confidence 454 7889999999999999999999864
No 227
>PRK10271 thiK thiamine kinase; Provisional
Probab=44.10 E-value=19 Score=37.47 Aligned_cols=34 Identities=32% Similarity=0.258 Sum_probs=28.8
Q ss_pred HhhhccCCCCCcceeEecCCCEEEEeeccccCCCC
Q psy10441 716 TYILGVGDRHFDNLLLTTSGKLFHIDFGYILGRDP 750 (867)
Q Consensus 716 tYiLGIGDRH~dNIli~~tG~lfHIDFG~ilg~~~ 750 (867)
..++-=||=|++||+++.+| +.=|||++.=..+|
T Consensus 76 ~~~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~gDp 109 (188)
T PRK10271 76 RLAPLHMDVHAGNLVHSASG-LRLIDWEYAGDGDI 109 (188)
T ss_pred CeeeecCCCCCccEEEECCC-EEEEeCCcccCCCH
Confidence 45777799999999998877 88999999866665
No 228
>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional
Probab=43.68 E-value=72 Score=34.94 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=49.5
Q ss_pred eeeeec-CccHHHHHhhcCcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhcc--CCCCCcceeEec----
Q psy10441 661 FVQFVD-SFPVAEVLATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGV--GDRHFDNLLLTT---- 733 (867)
Q Consensus 661 lIE~V~-s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~---- 733 (867)
+.|.++ +.|+.+++... .. . +. ..+.++...+.+|....--+--|| ||=++.||||+.
T Consensus 113 Vte~l~~~~sL~~~~~~~------~~----~---~~--~~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~~~~~~ 177 (268)
T PRK15123 113 ITEDLAPTISLEDYCADW------AT----N---PP--DPRLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFPG 177 (268)
T ss_pred EEeeCCCCccHHHHHHhh------cc----c---CC--CHHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEeccccC
Confidence 467776 66877776421 10 1 11 123466788888888888888887 899999999985
Q ss_pred ---CCCEEEEeeccc
Q psy10441 734 ---SGKLFHIDFGYI 745 (867)
Q Consensus 734 ---tG~lfHIDFG~i 745 (867)
+++++=|||+-+
T Consensus 178 ~~~~~~~~LIDl~r~ 192 (268)
T PRK15123 178 REEDLKLSVIDLHRA 192 (268)
T ss_pred CCCCceEEEEECCcc
Confidence 578999999866
No 229
>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp
Probab=43.66 E-value=3.2e+02 Score=29.78 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=22.3
Q ss_pred CCCCCcceeEecCCCEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
||=.++||||+.+|++--+|||..
T Consensus 120 ~dlkp~Nill~~~~~~kL~Dfg~a 143 (316)
T cd05592 120 RDLKLDNVLLDKDGHIKIADFGMC 143 (316)
T ss_pred CCCCHHHeEECCCCCEEEccCcCC
Confidence 688999999999999999999976
No 230
>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.
Probab=43.58 E-value=3.2e+02 Score=29.94 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=23.0
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=+++|||++.+|++.=+|||..-
T Consensus 125 ~dlkp~Nil~~~~~~~kL~Dfg~a~ 149 (333)
T cd05600 125 RDLKPENFLIDASGHIKLTDFGLSK 149 (333)
T ss_pred cCCCHHHEEECCCCCEEEEeCcCCc
Confidence 7889999999999999999999764
No 231
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=43.00 E-value=18 Score=36.20 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.0
Q ss_pred cCCCCCcceeEecCCCEEEEeeccccC
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYILG 747 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~ilg 747 (867)
=||=|++|||++ +|.+.=||||..-.
T Consensus 138 H~Dl~p~Nili~-~~~~~liDfg~a~~ 163 (187)
T cd05119 138 HGDLSEYNILVD-DGKVYIIDVPQAVE 163 (187)
T ss_pred cCCCChhhEEEE-CCcEEEEECccccc
Confidence 479999999999 99999999998843
No 232
>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as
Probab=42.77 E-value=3.6e+02 Score=28.76 Aligned_cols=46 Identities=17% Similarity=0.088 Sum_probs=31.0
Q ss_pred HHHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCCCEEEEeecccc
Q psy10441 701 IMDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 701 a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
....++..++.--..-+-.|| +|=.++||+++++|.+.=+|||...
T Consensus 103 ~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~ 150 (285)
T cd05630 103 RAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAV 150 (285)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeecccee
Confidence 344454444432222233444 7888999999999999999999765
No 233
>TIGR00938 thrB_alt homoserine kinase, Neisseria type. Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.
Probab=42.74 E-value=64 Score=35.48 Aligned_cols=29 Identities=24% Similarity=0.108 Sum_probs=24.6
Q ss_pred hhhccCCCCCcceeEecCCCEEEEeeccc
Q psy10441 717 YILGVGDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 717 YiLGIGDRH~dNIli~~tG~lfHIDFG~i 745 (867)
+.+==||=|.+||+++.+|...-|||+++
T Consensus 187 ~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~ 215 (307)
T TIGR00938 187 RGVIHADLFPDNVLFDGDSVKGVIDFYFA 215 (307)
T ss_pred CccCCCCCCcCcEEEECCceEEEeecccc
Confidence 44555899999999998886789999987
No 234
>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a
Probab=42.70 E-value=3.5e+02 Score=29.62 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.6
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+|=.++|||++.+|++.-+|||..-
T Consensus 125 rDikp~Nill~~~~~ikL~Dfg~~~ 149 (323)
T cd05615 125 RDLKLDNVMLDSEGHIKIADFGMCK 149 (323)
T ss_pred cCCCHHHeEECCCCCEEEecccccc
Confidence 6888999999999999999999754
No 235
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=42.46 E-value=19 Score=39.36 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=28.5
Q ss_pred HHhhhccCCCCCcceeEecC----CCEEEEeeccccCC
Q psy10441 715 ITYILGVGDRHFDNLLLTTS----GKLFHIDFGYILGR 748 (867)
Q Consensus 715 ~tYiLGIGDRH~dNIli~~t----G~lfHIDFG~ilg~ 748 (867)
...+|-=||=|++|||++++ |.+.-|||.+.=-.
T Consensus 177 ~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~~ 214 (302)
T cd05156 177 SPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYN 214 (302)
T ss_pred CCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCCC
Confidence 45677889999999999974 99999999987433
No 236
>cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.
Probab=42.44 E-value=49 Score=35.92 Aligned_cols=30 Identities=23% Similarity=0.077 Sum_probs=24.1
Q ss_pred hhhccCCCCCcceeEecCCCEEEEeecccc
Q psy10441 717 YILGVGDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 717 YiLGIGDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+.+-=||-|++|||++.+|-.--|||+++-
T Consensus 175 ~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~ 204 (296)
T cd05153 175 RGVIHADLFRDNVLFDGDELSGVIDFYFAC 204 (296)
T ss_pred CcCCccCcCcccEEEeCCceEEEeehhhhc
Confidence 344459999999999987666799998863
No 237
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=41.89 E-value=17 Score=38.48 Aligned_cols=27 Identities=33% Similarity=0.620 Sum_probs=23.2
Q ss_pred cCCCCCcceeEecCCCEEEEeeccc-cCC
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYI-LGR 748 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~i-lg~ 748 (867)
=||=|++|||++++| +.=|||++. +|.
T Consensus 157 HgD~~~~Nii~~~~~-~~iIDwe~a~~Gd 184 (226)
T TIGR02172 157 HGDFQIGNLITSGKG-TYWIDLGDFGYGN 184 (226)
T ss_pred ecCCCCCcEEEcCCC-cEEEechhcCcCC
Confidence 588899999999988 889999986 444
No 238
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=41.87 E-value=19 Score=38.44 Aligned_cols=38 Identities=29% Similarity=0.294 Sum_probs=27.9
Q ss_pred hhhHHHHHhhhcc--CCCCCcceeEecCCCEEEEeecccc
Q psy10441 709 CAGYCVITYILGV--GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 709 ~A~ysv~tYiLGI--GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+|......+=-|| +|=+++|||++.+|++.=||||..-
T Consensus 151 i~~~l~~lH~~GI~HrDlkp~NILv~~~~~v~LIDfg~~~ 190 (239)
T PRK01723 151 IGQLIARFHDAGVYHADLNAHNILLDPDGKFWLIDFDRGE 190 (239)
T ss_pred HHHHHHHHHHCCCCCCCCCchhEEEcCCCCEEEEECCCcc
Confidence 3333333344454 5999999999999999999999764
No 239
>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4. Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.
Probab=41.79 E-value=2.7e+02 Score=29.04 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=23.5
Q ss_pred cCCCCCcceeEecCCCEEEEeecccc
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~il 746 (867)
-||-+++||+++++|.+.=+|||..-
T Consensus 125 H~dl~p~nil~~~~~~~~l~dfg~~~ 150 (265)
T cd06631 125 HRDIKGNNVMLMPNGIIKLIDFGCAR 150 (265)
T ss_pred cCCcCHHhEEECCCCeEEeccchhhH
Confidence 48999999999999999999999764
No 240
>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=41.46 E-value=2.2e+02 Score=29.56 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=22.8
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=+++|||++.+|.+.=+|||...
T Consensus 126 ~di~p~Nili~~~~~~~l~dfg~~~ 150 (260)
T cd05070 126 RDLRSANILVGDGLVCKIADFGLAR 150 (260)
T ss_pred CCCccceEEEeCCceEEeCCceeee
Confidence 7889999999999999999999874
No 241
>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate
Probab=40.72 E-value=3.7e+02 Score=29.52 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.9
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+|=.++||||+.+|++.=+|||..-
T Consensus 119 rDikp~NIll~~~~~~kL~DfG~~~ 143 (328)
T cd05593 119 RDLKLENLMLDKDGHIKITDFGLCK 143 (328)
T ss_pred cccCHHHeEECCCCcEEEecCcCCc
Confidence 7999999999999999999999753
No 242
>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=40.56 E-value=2.6e+02 Score=29.02 Aligned_cols=27 Identities=22% Similarity=0.066 Sum_probs=24.0
Q ss_pred cCCCCCcceeEecCCCEEEEeeccccC
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYILG 747 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~ilg 747 (867)
-||-+++||||+.+|.+.=+|||....
T Consensus 126 h~di~p~nili~~~~~~~l~d~g~~~~ 152 (261)
T cd05034 126 HRDLAARNILVGENLVCKIADFGLARL 152 (261)
T ss_pred cCCcchheEEEcCCCCEEECcccccee
Confidence 489999999999999999999998643
No 243
>PHA00451 protein kinase
Probab=40.31 E-value=65 Score=35.36 Aligned_cols=84 Identities=14% Similarity=0.186 Sum_probs=50.7
Q ss_pred HHhhcCcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEecCCCEEEEeeccccCCCCCC
Q psy10441 673 VLATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHIDFGYILGRDPKP 752 (867)
Q Consensus 673 I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~tG~lfHIDFG~ilg~~~k~ 752 (867)
+...+..+..++.+.+.++..++.. -..|+.+|--.-=+-|=+.-=|=|.+|||++++|..+-.|= .-|.++.+.
T Consensus 148 ~h~~ya~~a~~~~e~~~d~~~~~~~----~~~FIETCk~IRkFF~GIASFDmHSGNiMf~~~g~p~ITDP-VSFS~dr~r 222 (362)
T PHA00451 148 VHHHYAAAAYIIIECCSDAAEEYPG----SQEFIETCKMIRKFFYGIASFDMHSGNIMFDQDGVPYITDP-VSFSHDRER 222 (362)
T ss_pred HHHHHHHHHHHHHhccCCHHhccCC----chhHHHHHHHHHHHHhhhhcccccCCceeeCCCCCeEecCC-ccccCcccc
Confidence 3344455677777766555444433 45677777654333333333499999999999999877662 223444333
Q ss_pred CCCcccccHH
Q psy10441 753 LPPPMKLSKE 762 (867)
Q Consensus 753 e~vPFrLT~~ 762 (867)
++- |-|.|+
T Consensus 223 e~G-F~ldPd 231 (362)
T PHA00451 223 EPG-FPLDPD 231 (362)
T ss_pred CCC-CCCCHH
Confidence 333 777776
No 244
>PRK12274 serine/threonine protein kinase; Provisional
Probab=40.11 E-value=22 Score=37.82 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=25.9
Q ss_pred Hhhhcc--CCC-CCcceeEecCCCEEEEeecccc
Q psy10441 716 TYILGV--GDR-HFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 716 tYiLGI--GDR-H~dNIli~~tG~lfHIDFG~il 746 (867)
.+=.|| +|= .++|||++.+|++.=||||..-
T Consensus 107 lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~ 140 (218)
T PRK12274 107 LHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAV 140 (218)
T ss_pred HHHCcCccCCCCCcceEEEcCCCCEEEEECCCce
Confidence 344567 788 5799999999999999999985
No 245
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=39.73 E-value=19 Score=36.75 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=21.6
Q ss_pred HHhhhccCCCCCcceeEe-cCCCEEEEeecccc
Q psy10441 715 ITYILGVGDRHFDNLLLT-TSGKLFHIDFGYIL 746 (867)
Q Consensus 715 ~tYiLGIGDRH~dNIli~-~tG~lfHIDFG~il 746 (867)
....+-=||=|++|||++ .+|++--|||+.+-
T Consensus 164 ~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~ 196 (239)
T PF01636_consen 164 LPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAG 196 (239)
T ss_dssp SCEEEE-SS-SGGGEEEESSTTEEEE--GTT-E
T ss_pred CCcEEEEeccccccceeeeccceeEEEecccce
Confidence 345567799999999999 57777789998863
No 246
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=39.53 E-value=49 Score=45.76 Aligned_cols=82 Identities=15% Similarity=0.134 Sum_probs=53.8
Q ss_pred ccceEEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEceec-
Q psy10441 55 CADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFGK- 133 (867)
Q Consensus 55 ~~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd~- 133 (867)
.+|=||.+.+=. + .+.+|+.+.-+.++.|||-++|.+. +-|.+-.|.|.+||...-++. .+|.++|+|=+-
T Consensus 1998 ~sdPyv~l~~g~-~----~~~kTkvvk~~~nP~Wne~f~~~~~--~p~~~~~l~iev~d~d~f~kd-~~G~~~i~l~~vv 2069 (2102)
T PLN03200 1998 NTNAFCKLTLGN-G----PPRQTKVVSHSSSPEWKEGFTWAFD--SPPKGQKLHISCKSKNTFGKS-SLGKVTIQIDRVV 2069 (2102)
T ss_pred CCCCeEEEEECC-C----CcccccccCCCCCCCcccceeeeec--CCCCCCceEEEEEecCccCCC-CCceEEEEHHHHh
Confidence 345576665432 2 2335666665667899999998654 447788899999996533343 799999999662
Q ss_pred CCcccccceee
Q psy10441 134 YGVFRQGMMDL 144 (867)
Q Consensus 134 ~~~Lr~G~~~L 144 (867)
.+.=.+|.+.|
T Consensus 2070 ~~~~~~~~~~L 2080 (2102)
T PLN03200 2070 MEGTYSGEYSL 2080 (2102)
T ss_pred cCceeeeeeec
Confidence 22223455555
No 247
>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment
Probab=39.39 E-value=4.6e+02 Score=27.27 Aligned_cols=27 Identities=22% Similarity=0.125 Sum_probs=23.9
Q ss_pred cCCCCCcceeEecCCCEEEEeeccccC
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYILG 747 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~ilg 747 (867)
=||=+++||+|+.+|.+.-+|||....
T Consensus 129 H~di~p~nili~~~~~~~l~dfg~~~~ 155 (266)
T cd05033 129 HRDLAARNILVNSNLVCKVSDFGLSRR 155 (266)
T ss_pred cCCCCcceEEEcCCCCEEECccchhhc
Confidence 368899999999999999999998753
No 248
>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in
Probab=39.07 E-value=3.6e+02 Score=29.55 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.7
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=.++||||+.+|.+.=+|||..-
T Consensus 119 ~Dlkp~NIll~~~~~~kL~Dfg~~~ 143 (323)
T cd05595 119 RDIKLENLMLDKDGHIKITDFGLCK 143 (323)
T ss_pred cCCCHHHEEEcCCCCEEecccHHhc
Confidence 7889999999999999999999764
No 249
>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of
Probab=38.98 E-value=4.9e+02 Score=27.40 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=23.0
Q ss_pred cCCCCCcceeEecCCCEEEEeecccc
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~il 746 (867)
-||=+++||+++++|.+.=+|||...
T Consensus 118 H~di~p~Nil~~~~~~~~l~dfg~~~ 143 (277)
T cd05577 118 YRDLKPENVLLDDHGNVRISDLGLAV 143 (277)
T ss_pred cCCCCHHHEEECCCCCEEEccCcchh
Confidence 37888999999999999999999764
No 250
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=38.71 E-value=5.7e+02 Score=28.81 Aligned_cols=47 Identities=32% Similarity=0.461 Sum_probs=32.8
Q ss_pred CCCCCcceeEecCCCEEEEeeccccCCCCC-------CCCCcccccHHHHHHhC
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYILGRDPK-------PLPPPMKLSKEMVEAMG 768 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~ilg~~~k-------~e~vPFrLT~~mv~~mG 768 (867)
+|=.++||||+++|++.=+|||........ ..-.|.=+.||++...+
T Consensus 166 rDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~ 219 (370)
T cd05621 166 RDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQG 219 (370)
T ss_pred cCCCHHHEEECCCCCEEEEecccceecccCCceecccCCCCcccCCHHHHhccC
Confidence 688899999999999999999987532211 11233346778776554
No 251
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=38.70 E-value=5.2e+02 Score=27.69 Aligned_cols=45 Identities=29% Similarity=0.441 Sum_probs=32.5
Q ss_pred CCCCCcceeEecCCCEEEEeeccccCCCCC------CCCCcccccHHHHHH
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYILGRDPK------PLPPPMKLSKEMVEA 766 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~ilg~~~k------~e~vPFrLT~~mv~~ 766 (867)
||=+++|||++.+|.+.=+|||......+. ....|.-+.|++...
T Consensus 139 ~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~ 189 (297)
T cd06656 139 RDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTR 189 (297)
T ss_pred CCCCHHHEEECCCCCEEECcCccceEccCCccCcCcccCCccccCHHHHcC
Confidence 899999999999999999999987533211 123445567777653
No 252
>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C. Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re
Probab=38.56 E-value=4.3e+02 Score=28.76 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=22.2
Q ss_pred CCCCCcceeEecCCCEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
||=.++|||++++|.+--+|||..
T Consensus 120 ~dlkp~Nill~~~~~~kl~Dfg~~ 143 (318)
T cd05570 120 RDLKLDNVLLDSEGHIKIADFGMC 143 (318)
T ss_pred cCCCHHHeEECCCCcEEecccCCC
Confidence 788899999999999999999976
No 253
>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl
Probab=37.83 E-value=4.3e+02 Score=28.66 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.6
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+|=+++|||++.+|++.=+|||..-
T Consensus 117 rDlkp~Nili~~~~~~kl~Dfg~~~ 141 (312)
T cd05585 117 RDLKPENILLDYQGHIALCDFGLCK 141 (312)
T ss_pred CCCCHHHeEECCCCcEEEEECcccc
Confidence 6888999999999999999999763
No 254
>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=37.66 E-value=69 Score=35.19 Aligned_cols=24 Identities=33% Similarity=0.639 Sum_probs=22.3
Q ss_pred CCCCCcceeEecCCCEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
||=.++||||+.+|++.=+|||..
T Consensus 129 rDlkp~Nili~~~~~~kl~DfG~~ 152 (332)
T cd05614 129 RDIKLENILLDSEGHVVLTDFGLS 152 (332)
T ss_pred cCCCHHHeEECCCCCEEEeeCcCC
Confidence 788899999999999999999976
No 255
>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481
Probab=37.29 E-value=4.3e+02 Score=32.78 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=22.1
Q ss_pred CCCCCcceeEecCCCEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
+|=.++||||+.+|++.=+|||..
T Consensus 128 rDLKP~NILl~~~g~vkL~DFGls 151 (669)
T cd05610 128 RDLKPDNMLISNEGHIKLTDFGLS 151 (669)
T ss_pred CCccHHHEEEcCCCCEEEEeCCCC
Confidence 588899999999999999999986
No 256
>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros. Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male
Probab=37.05 E-value=83 Score=32.94 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.5
Q ss_pred CCCCCcceeEecCC-----CEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSG-----KLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG-----~lfHIDFG~i 745 (867)
||-+++|||++.++ .+.-+|||..
T Consensus 130 ~dl~p~nil~~~~~~~~~~~~~l~dfg~~ 158 (269)
T cd05044 130 RDLAARNCLVSEKGYDADRVVKIGDFGLA 158 (269)
T ss_pred CCCChheEEEecCCCCCCcceEECCcccc
Confidence 78899999999877 8889999976
No 257
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=36.80 E-value=27 Score=32.38 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=23.0
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=|++|||++++|.+.=+|||..-
T Consensus 113 ~Dl~~~Nil~~~~~~~~l~Df~~~~ 137 (155)
T cd05120 113 GDLHPGNILVDDGKILGIIDWEYAG 137 (155)
T ss_pred cCCCcceEEEECCcEEEEEeccccc
Confidence 8999999999999999999999764
No 258
>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla
Probab=36.65 E-value=72 Score=33.97 Aligned_cols=46 Identities=22% Similarity=0.168 Sum_probs=31.5
Q ss_pred HHHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCCCEEEEeecccc
Q psy10441 701 IMDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 701 a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
....++..++---..-+=.|| ||=.++||||+.+|.+.-+|||..-
T Consensus 111 ~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~ 158 (290)
T cd07862 111 TIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR 158 (290)
T ss_pred HHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccceE
Confidence 444555544432222233444 7889999999999999999999863
No 259
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=36.49 E-value=4.3e+02 Score=31.01 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=23.1
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=+++||||+.+|.+.=+|||..-
T Consensus 193 rDlkp~NIll~~~~~~kL~DFgla~ 217 (478)
T PTZ00267 193 RDLKSANIFLMPTGIIKLGDFGFSK 217 (478)
T ss_pred CCcCHHhEEECCCCcEEEEeCcCce
Confidence 7999999999999999999999864
No 260
>KOG0612|consensus
Probab=36.46 E-value=53 Score=42.56 Aligned_cols=49 Identities=33% Similarity=0.416 Sum_probs=38.0
Q ss_pred CCCCCcceeEecCCCEEEEeeccccCCCC-------CCCCCcccccHHHHHHhCCC
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYILGRDP-------KPLPPPMKLSKEMVEAMGGI 770 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~ilg~~~-------k~e~vPFrLT~~mv~~mGg~ 770 (867)
.|=-||||||+..||+=-.|||-++--+. ..--.|==++|+++.+||+-
T Consensus 199 RDiKPDNvLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~ 254 (1317)
T KOG0612|consen 199 RDIKPDNVLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDG 254 (1317)
T ss_pred ccCCcceeEecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCC
Confidence 57789999999999999999999974331 12234445889999999754
No 261
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=36.37 E-value=1.2e+02 Score=36.45 Aligned_cols=86 Identities=19% Similarity=0.274 Sum_probs=50.7
Q ss_pred eeeeecCccHHHHHhhc-----CcHHHHHHhhCCCCCC--CCCCcHHHHHHHHHhhhhHHHHHhhhcc--CCCCCcceeE
Q psy10441 661 FVQFVDSFPVAEVLATE-----GSIQNFFRKHHPSDNG--PYGISSEIMDTYVRSCAGYCVITYILGV--GDRHFDNLLL 731 (867)
Q Consensus 661 lIE~V~s~tl~~I~~~~-----~~l~~~l~~~~~~~~~--~~~~~~~a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli 731 (867)
+.|+++..||.+.+... +.+.+|+......... ...........++..++-.-...+=.|| +|-+++|||+
T Consensus 263 V~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl 342 (507)
T PLN03224 263 VWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLV 342 (507)
T ss_pred EEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEE
Confidence 34666788998888643 3466666533211100 0011123344555554433222233343 7889999999
Q ss_pred ecCCCEEEEeecccc
Q psy10441 732 TTSGKLFHIDFGYIL 746 (867)
Q Consensus 732 ~~tG~lfHIDFG~il 746 (867)
+.+|.+.=+|||...
T Consensus 343 ~~~~~~kL~DFGla~ 357 (507)
T PLN03224 343 TVDGQVKIIDFGAAV 357 (507)
T ss_pred CCCCcEEEEeCcCcc
Confidence 999999999999874
No 262
>KOG3087|consensus
Probab=36.27 E-value=3.8e+02 Score=28.49 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcccccEEEEecC--Ccceeeeec-CccHHHHHhhcCcHHHHHHhhCCCCCCCCCCcHHH
Q psy10441 625 QLILQIITLMDKLLRSENLDLKLTPYRVLATNT--KHGFVQFVD-SFPVAEVLATEGSIQNFFRKHHPSDNGPYGISSEI 701 (867)
Q Consensus 625 ~l~lQli~lmd~ll~~~~ldl~l~~Y~Vip~~~--~~GlIE~V~-s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a 701 (867)
.++.|=.+++.++..- | +....++.+.. ++=.+||++ +.++. +|+.+...++.. .+.
T Consensus 55 ~Rt~~Ear~l~k~~~~-G----I~~P~l~~~D~~~~~i~ME~~~g~~~vk----------~~i~~~~~~~~~-----d~~ 114 (229)
T KOG3087|consen 55 KRTKQEARLLAKCRAL-G----IPAPRLIFIDTYGGQIYMEFIDGASTVK----------DFILSTMEDESE-----DEG 114 (229)
T ss_pred HHHHHHHHHHHHHHHh-C----CCCceEEEEecCCCeEEEEeccchhHHH----------HHHHHHccCccc-----chh
Confidence 4666777777776643 4 44566777544 344689997 55554 344433332221 123
Q ss_pred HHHHHHhhhhHHHHHhhhc--cCCCCCcceeEec-CCCE--EEEeeccccCCC
Q psy10441 702 MDTYVRSCAGYCVITYILG--VGDRHFDNLLLTT-SGKL--FHIDFGYILGRD 749 (867)
Q Consensus 702 ~~~F~~S~A~ysv~tYiLG--IGDRH~dNIli~~-tG~l--fHIDFG~ilg~~ 749 (867)
..+|.+-.+.-----+.=+ =||-...|||+.+ .++. +-||||.-..+.
T Consensus 115 ~~~~~~~iG~~igklH~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~s~ 167 (229)
T KOG3087|consen 115 LAELARRIGELIGKLHDNDIIHGDLTTSNILLRSDGNQITPILIDFGLSSVSR 167 (229)
T ss_pred HHHHHHHHHHHHHHhhhCCeecccccccceEEecCCCcCceEEEeecchhccc
Confidence 3444444332211111112 2899999999996 5566 899999887764
No 263
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=36.24 E-value=2.9e+02 Score=29.78 Aligned_cols=44 Identities=27% Similarity=0.354 Sum_probs=30.8
Q ss_pred CCCCCcceeEecCCCEEEEeeccccCCCCCC--CCCcccccHHHHH
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYILGRDPKP--LPPPMKLSKEMVE 765 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~ilg~~~k~--e~vPFrLT~~mv~ 765 (867)
||-+++||+++++|.+.=+|||......+.. ...+.-+.|+++.
T Consensus 139 ~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~ 184 (307)
T cd06607 139 RDIKAGNILLTEPGTVKLADFGSASLVSPANSFVGTPYWMAPEVIL 184 (307)
T ss_pred cCCCcccEEECCCCCEEEeecCcceecCCCCCccCCccccCceeee
Confidence 7999999999999999999999774332221 1233345666653
No 264
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=36.12 E-value=4.1e+02 Score=29.87 Aligned_cols=26 Identities=42% Similarity=0.543 Sum_probs=23.7
Q ss_pred CCCCCcceeEecCCCEEEEeeccccC
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYILG 747 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~ilg 747 (867)
||=.++||||+++|++.=+|||....
T Consensus 166 rDLkp~NILl~~~~~~kL~DfG~~~~ 191 (370)
T cd05596 166 RDVKPDNMLLDKSGHLKLADFGTCMK 191 (370)
T ss_pred cCCCHHHEEEcCCCCEEEEeccceee
Confidence 88899999999999999999998753
No 265
>KOG0598|consensus
Probab=36.11 E-value=20 Score=40.69 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=27.0
Q ss_pred HHHHhhhcc----CCCCCcceeEecCCCEEEEeecccc
Q psy10441 713 CVITYILGV----GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 713 sv~tYiLGI----GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
|.+.|+=.. +|--++||||+..||+.-.|||.+=
T Consensus 136 lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k 173 (357)
T KOG0598|consen 136 LALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCK 173 (357)
T ss_pred HHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccch
Confidence 445555332 5888999999999999999999884
No 266
>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr
Probab=35.69 E-value=4.9e+02 Score=27.53 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=24.9
Q ss_pred hhcc--CCCCCcceeEecCCCEEEEeecccc
Q psy10441 718 ILGV--GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 718 iLGI--GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
=.|| ||=.++|||++.+|.+.=+|||...
T Consensus 113 ~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~ 143 (277)
T cd05607 113 SMDIVYRDMKPENVLLDDQGNCRLSDLGLAV 143 (277)
T ss_pred HCCEEEccCChHhEEEcCCCCEEEeeceeee
Confidence 3455 7889999999999999999999764
No 267
>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio
Probab=35.46 E-value=5.2e+02 Score=26.74 Aligned_cols=46 Identities=20% Similarity=0.027 Sum_probs=32.0
Q ss_pred HHHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCCCEEEEeecccc
Q psy10441 701 IMDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 701 a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
....++..++.-.-.-+--|| ||=+++|||++++|.+--+|||..-
T Consensus 96 ~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~ 143 (257)
T cd05116 96 NITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSK 143 (257)
T ss_pred HHHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCcccc
Confidence 344455554433333344454 8999999999999999999999763
No 268
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=35.37 E-value=3.9e+02 Score=27.92 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=22.7
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=+++|||++++|.+.=+|||...
T Consensus 126 ~dl~p~Nill~~~~~~~L~dfg~~~ 150 (262)
T cd05071 126 RDLRAANILVGENLVCKVADFGLAR 150 (262)
T ss_pred cccCcccEEEcCCCcEEeccCCcee
Confidence 7888999999999999999999873
No 269
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.26 E-value=30 Score=32.64 Aligned_cols=74 Identities=24% Similarity=0.282 Sum_probs=51.5
Q ss_pred chhhhhhchhhHHhhhccccCCChHHHHHHHHHhhcc--------CCCCHhhHhhccCCCCC----------CHHHHHHH
Q psy10441 319 FRFYLSNQKKALTKFLECVNWELQAEARQALDLLDQW--------APMDVEDSLQLLSPAFK----------HSAVRRYA 380 (867)
Q Consensus 319 ~R~~l~~~p~aL~kfL~sV~W~~~~e~~~a~~lL~~W--------~~i~~~~ALeLL~~~f~----------~~~VR~yA 380 (867)
++-|+..+|..|..||+.-||-+.+++.+.+.=-.+| ..=-...||+||..--. ...+...+
T Consensus 6 lk~Yl~~~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~i 85 (108)
T PF10366_consen 6 LKCYLETNPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETI 85 (108)
T ss_pred HHHHHHhCHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHH
Confidence 4556666899999999988999999998876544444 23467889999752111 12455567
Q ss_pred HHHhccCCchhH
Q psy10441 381 VTRLQQASDEDL 392 (867)
Q Consensus 381 V~~L~~~~d~eL 392 (867)
|+-|++++.+++
T Consensus 86 v~yL~~L~~~~~ 97 (108)
T PF10366_consen 86 VQYLQKLGNEDL 97 (108)
T ss_pred HHHHHhCChhhh
Confidence 888888866554
No 270
>KOG1235|consensus
Probab=34.96 E-value=1.1e+02 Score=36.96 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=44.7
Q ss_pred ecCCcceeeeecCccHHHHHhhcCcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhccCCCCCcceeEec-
Q psy10441 655 TNTKHGFVQFVDSFPVAEVLATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTT- 733 (867)
Q Consensus 655 ~~~~~GlIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGIGDRH~dNIli~~- 733 (867)
+++++=.+|||+...+.++ +++.+..-+ +...-+-.-.+.+--++.+=+==+|=|++||+|++
T Consensus 274 st~RVLtME~~~G~~i~Dl--------~~i~~~gi~--------~~~i~~~l~~~~~~qIf~~GffHaDPHPGNilv~~~ 337 (538)
T KOG1235|consen 274 STKRVLTMEYVDGIKINDL--------DAIDKRGIS--------PHDILNKLVEAYLEQIFKTGFFHADPHPGNILVRPN 337 (538)
T ss_pred CcceEEEEEecCCccCCCH--------HHHHHcCCC--------HHHHHHHHHHHHHHHHHhcCCccCCCCCCcEEEecC
Confidence 4677778999997666554 344433222 22222222222222222222223699999999994
Q ss_pred ---CCCEEEEeeccccC
Q psy10441 734 ---SGKLFHIDFGYILG 747 (867)
Q Consensus 734 ---tG~lfHIDFG~ilg 747 (867)
+|+++--|||..-.
T Consensus 338 ~~~~~~ivllDhGl~~~ 354 (538)
T KOG1235|consen 338 PEGDEEIVLLDHGLYAV 354 (538)
T ss_pred CCCCccEEEEccccccc
Confidence 77899999998743
No 271
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=34.86 E-value=3.1e+02 Score=29.03 Aligned_cols=29 Identities=34% Similarity=0.516 Sum_probs=25.2
Q ss_pred hhcc--CCCCCcceeEecCCCEEEEeecccc
Q psy10441 718 ILGV--GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 718 iLGI--GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
-.|+ ||-+++||+++.+|++.=+|||+..
T Consensus 134 ~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~ 164 (286)
T cd06614 134 SQNVIHRDIKSDNILLSKDGSVKLADFGFAA 164 (286)
T ss_pred hCCeeeCCCChhhEEEcCCCCEEECccchhh
Confidence 3555 8999999999999999999999764
No 272
>KOG0594|consensus
Probab=34.48 E-value=99 Score=34.91 Aligned_cols=65 Identities=20% Similarity=0.346 Sum_probs=43.5
Q ss_pred cHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCCCEEEEeecccc
Q psy10441 679 SIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 679 ~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
.+..|+....+.. .+..++..+.|++.+-----.++==|| .|=+++||||+++|.+=-+|||-.-
T Consensus 102 DL~~ymd~~~~~~---~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAr 168 (323)
T KOG0594|consen 102 DLKKYMDSLPKKP---QGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLAR 168 (323)
T ss_pred cHHHHHHhccccc---cCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeeccchHH
Confidence 3555565544321 233344577777776544444444455 5889999999999999999999874
No 273
>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta. Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.
Probab=34.40 E-value=5e+02 Score=28.47 Aligned_cols=25 Identities=40% Similarity=0.535 Sum_probs=22.7
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+|=.++||||+.+|++.=+|||...
T Consensus 126 rDlkp~Nill~~~~~~kl~DfG~a~ 150 (331)
T cd05624 126 RDIKPDNVLLDMNGHIRLADFGSCL 150 (331)
T ss_pred ccCchHHEEEcCCCCEEEEecccee
Confidence 6888999999999999999999864
No 274
>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt
Probab=34.28 E-value=5e+02 Score=27.16 Aligned_cols=96 Identities=16% Similarity=0.082 Sum_probs=49.5
Q ss_pred ccccEEEEecCCcce-eeeecCccHHHHHhhcCcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhcc--CC
Q psy10441 647 LTPYRVLATNTKHGF-VQFVDSFPVAEVLATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGV--GD 723 (867)
Q Consensus 647 l~~Y~Vip~~~~~Gl-IE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGI--GD 723 (867)
+..|.+...+....+ .|+++..+|.+.+...+.-...+.. .+.....+. ......++..++.-...-+-.|+ ||
T Consensus 71 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~-~~~~~~~l~--~~~~~~~~~~i~~~l~~lH~~~i~h~d 147 (280)
T cd05049 71 VKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKS-PDSPMGELT--LSQLLQIAVQIASGMVYLASQHFVHRD 147 (280)
T ss_pred hheeeEEecCCCeEEEEecCCCCCHHHHHHhcCCchhhhcc-ccccccccc--HHHHHHHHHHHHHHHHHHhhCCeeccc
Confidence 344555555544444 4566677787777655432222210 111111111 12223333333321111122233 67
Q ss_pred CCCcceeEecCCCEEEEeeccc
Q psy10441 724 RHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 724 RH~dNIli~~tG~lfHIDFG~i 745 (867)
=.++|||++.+|.+-=+|||..
T Consensus 148 lkp~nili~~~~~~kl~d~g~~ 169 (280)
T cd05049 148 LATRNCLVGYDLVVKIGDFGMS 169 (280)
T ss_pred cccceEEEcCCCeEEECCcccc
Confidence 7799999999999999999975
No 275
>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a
Probab=34.27 E-value=6.1e+02 Score=27.18 Aligned_cols=25 Identities=40% Similarity=0.519 Sum_probs=22.7
Q ss_pred cCCCCCcceeEecCCCEEEEeeccc
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~i 745 (867)
-||=|++||+|+.+|.+.-+|||..
T Consensus 124 H~dl~p~NIll~~~~~~~l~dfg~~ 148 (305)
T cd05609 124 HRDLKPDNLLITSMGHIKLTDFGLS 148 (305)
T ss_pred ccCCchHHEEECCCCCEEEeeCCCc
Confidence 3788999999999999999999965
No 276
>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re
Probab=34.15 E-value=5.3e+02 Score=26.40 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.6
Q ss_pred CCCCCcceeEecCCCEEEEeeccccC
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYILG 747 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~ilg 747 (867)
||=+++|||++++|.+.=+|||....
T Consensus 117 ~di~~~nil~~~~~~~~l~dfg~~~~ 142 (265)
T cd05579 117 RDLKPDNILIDSNGHLKLTDFGLSKV 142 (265)
T ss_pred CCCCHHHeEEcCCCCEEEEecccchh
Confidence 89999999999999999999998654
No 277
>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows
Probab=33.98 E-value=83 Score=32.83 Aligned_cols=24 Identities=25% Similarity=0.229 Sum_probs=22.6
Q ss_pred CCCCCcceeEecCCCEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
+|=+++||+++.+|.+.-+|||..
T Consensus 124 ~dl~p~ni~i~~~~~~kl~dfg~~ 147 (256)
T cd05059 124 RDLAARNCLVGEDNVVKVSDFGLA 147 (256)
T ss_pred ccccHhhEEECCCCcEEECCcccc
Confidence 889999999999999999999976
No 278
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=33.85 E-value=1.4e+02 Score=30.29 Aligned_cols=73 Identities=14% Similarity=0.237 Sum_probs=52.8
Q ss_pred cceEEEEEEEECCeeeecceecccccCCCC--ccccceEEeccccCCcCccceEEEEEEEecCCCCceeEEEEEEEceec
Q psy10441 56 ADLVVFCQIFSDGVPLSLPISSSYKSFTNR--WDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFGK 133 (867)
Q Consensus 56 ~~l~V~~ql~~g~~~L~~pv~T~~~~f~~~--~~Wnewl~fpI~~~dLPr~a~L~~tI~~~~~~~~~~~vG~t~i~LFd~ 133 (867)
....+-+.||.|||-.+ +|..++.... ..+||-+. |++...|.+ |++.||+..+ .....|+.+.+++-+.
T Consensus 35 ~~~~~~ikl~~N~k~V~---~T~~~~l~~dF~v~f~~~f~--v~i~~~Pes--i~l~i~E~~~-~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 35 QKTRYYIKLFFNDKEVS---RTRSRPLWSDFRVHFNEIFN--VQITRWPES--IKLEIYEKSG-LSDRLLAEVFVPVPGS 106 (168)
T ss_pred hheeEEEEEEECCEEEE---eeeeEecCCCeEEeccCEEE--EEEecCCCE--EEEEEEEccC-ccceEEEEEEeeCCCC
Confidence 46677788999999987 5666666443 44666544 566778865 8999999876 4557899999999875
Q ss_pred CCc
Q psy10441 134 YGV 136 (867)
Q Consensus 134 ~~~ 136 (867)
...
T Consensus 107 ~~~ 109 (168)
T PF15625_consen 107 TVH 109 (168)
T ss_pred ccc
Confidence 443
No 279
>cd00180 PKc Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which
Probab=33.66 E-value=4.4e+02 Score=25.31 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=24.5
Q ss_pred hccCCCCCcceeEec-CCCEEEEeecccc
Q psy10441 719 LGVGDRHFDNLLLTT-SGKLFHIDFGYIL 746 (867)
Q Consensus 719 LGIGDRH~dNIli~~-tG~lfHIDFG~il 746 (867)
+--||=+++||+++. +|++.=+|||..-
T Consensus 113 ~~H~dl~~~ni~~~~~~~~~~l~d~~~~~ 141 (215)
T cd00180 113 IIHRDLKPENILLDSDNGKVKLADFGLSK 141 (215)
T ss_pred eeccCCCHhhEEEeCCCCcEEEecCCceE
Confidence 345799999999998 9999999999874
No 280
>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of
Probab=33.57 E-value=6.9e+02 Score=27.92 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=22.1
Q ss_pred CCCCCcceeEecCCCEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
+|-.++||||+.+|++.=+|||..
T Consensus 125 rDlkp~NIll~~~~~~kl~DfGla 148 (377)
T cd05629 125 RDIKPDNILIDRGGHIKLSDFGLS 148 (377)
T ss_pred cCCCHHHEEECCCCCEEEeecccc
Confidence 688899999999999999999976
No 281
>KOG1242|consensus
Probab=33.55 E-value=3.8e+02 Score=32.59 Aligned_cols=134 Identities=18% Similarity=0.233 Sum_probs=80.2
Q ss_pred hhhHHhhhccccCCChHHHHHHHHHhhccCCCCHhhHhhccCCCC------CCHHHHHHHHHHhccC----CchhHHHHH
Q psy10441 327 KKALTKFLECVNWELQAEARQALDLLDQWAPMDVEDSLQLLSPAF------KHSAVRRYAVTRLQQA----SDEDLLLYL 396 (867)
Q Consensus 327 p~aL~kfL~sV~W~~~~e~~~a~~lL~~W~~i~~~~ALeLL~~~f------~~~~VR~yAV~~L~~~----~d~eL~~yL 396 (867)
|..|.-++.+ .|.....+-|.+..|..-+|...+..+.=+-|.- +|+.||+-|..+|.++ +..|+..|+
T Consensus 257 psll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~i 335 (569)
T KOG1242|consen 257 PSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKII 335 (569)
T ss_pred hhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 3333344434 7877777777777666667666665555555432 5899999999999775 457899999
Q ss_pred HHHHHHhcccc-cccccccccccCCCcchhhhhhhhhhccccccccccCCcccchhHHHHHHHHHhcCc-----chhhHH
Q psy10441 397 LQLVQALKYEN-FEDIMHGYKKLKVPPAIEASVLAEEMSSNVLEYNLDSSHAENMDLTSFLIHRASKSL-----TLANYF 470 (867)
Q Consensus 397 lQLVQaLkyE~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~La~fLi~ra~~n~-----~i~~~l 470 (867)
|-|++++--=. +.. . ...+.......-.++ ...=++.-=|++|++... +-+-..
T Consensus 336 p~Lld~l~dp~~~~~-e--------------~~~~L~~ttFV~~V~-----~psLalmvpiL~R~l~eRst~~kr~t~~I 395 (569)
T KOG1242|consen 336 PTLLDALADPSCYTP-E--------------CLDSLGATTFVAEVD-----APSLALMVPILKRGLAERSTSIKRKTAII 395 (569)
T ss_pred HHHHHHhcCcccchH-H--------------HHHhhcceeeeeeec-----chhHHHHHHHHHHHHhhccchhhhhHHHH
Confidence 99999987433 110 0 000000000000000 011234445666666543 667889
Q ss_pred HHHhhhhccCc
Q psy10441 471 FWYLTIESEDQ 481 (867)
Q Consensus 471 ~W~L~~e~~~~ 481 (867)
+|++..+++|+
T Consensus 396 idNm~~LveDp 406 (569)
T KOG1242|consen 396 IDNMCKLVEDP 406 (569)
T ss_pred HHHHHHhhcCH
Confidence 99999999886
No 282
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=33.47 E-value=30 Score=35.14 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=24.3
Q ss_pred HhhhccCCCCCcceeEec--CCCEEEEeecccc
Q psy10441 716 TYILGVGDRHFDNLLLTT--SGKLFHIDFGYIL 746 (867)
Q Consensus 716 tYiLGIGDRH~dNIli~~--tG~lfHIDFG~il 746 (867)
-..+==||=|++|||++. +|.+.=|||+..-
T Consensus 173 ~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~ 205 (223)
T cd05154 173 RPGLVHGDYRLGNVLFHPDEPRVVAVLDWELAT 205 (223)
T ss_pred CcEEEECCCCcccEEEcCCCCcEEEEEeccccc
Confidence 345556999999999997 5656779998763
No 283
>KOG0690|consensus
Probab=33.08 E-value=1.2e+02 Score=34.43 Aligned_cols=44 Identities=34% Similarity=0.554 Sum_probs=30.4
Q ss_pred CCCCCcceeEecCCCEEEEeeccc-----cCCCCCCC-CCcccccHHHHH
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYI-----LGRDPKPL-PPPMKLSKEMVE 765 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~i-----lg~~~k~e-~vPFrLT~~mv~ 765 (867)
.|-.++|+|++++||+=-.|||.+ +|...+.+ -.|=-|.|+.++
T Consensus 292 RDlKLENLlLDkDGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVle 341 (516)
T KOG0690|consen 292 RDLKLENLLLDKDGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVLE 341 (516)
T ss_pred eechhhhheeccCCceEeeecccchhcccccceeccccCChhhcCchhhc
Confidence 477889999999999999999998 34443333 233344455543
No 284
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=32.80 E-value=75 Score=33.70 Aligned_cols=25 Identities=40% Similarity=0.514 Sum_probs=22.9
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||-+++|||++++|.+.-+|||...
T Consensus 148 ~dlkp~nili~~~~~~kl~dfg~~~ 172 (286)
T cd06638 148 RDVKGNNILLTTEGGVKLVDFGVSA 172 (286)
T ss_pred cCCCHHhEEECCCCCEEEccCCcee
Confidence 7889999999999999999999864
No 285
>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP. PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].
Probab=32.79 E-value=1.2e+02 Score=31.87 Aligned_cols=83 Identities=22% Similarity=0.322 Sum_probs=53.0
Q ss_pred hCCCCCccc--ccEEEEecCCcce-eeeec------CccHHHHHhhcCcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhh
Q psy10441 640 SENLDLKLT--PYRVLATNTKHGF-VQFVD------SFPVAEVLATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCA 710 (867)
Q Consensus 640 ~~~ldl~l~--~Y~Vip~~~~~Gl-IE~V~------s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A 710 (867)
+.+.+.... .|..+.|+.+.|+ +|.|. +.||.+.+++.+ +.. ...++.+.|..-+.
T Consensus 71 ~~~~~~~~i~r~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~~-~~~--------------~~~~~L~~f~~~l~ 135 (199)
T PF10707_consen 71 RRGVDWSHIPRFYGFVETNLGLGLVVELIRDADGNISPTLEDYLKEGG-LTE--------------ELRQALDEFKRYLL 135 (199)
T ss_pred ccCCcccccccEeEEEecCCceEEEEEEEECCCCCcCccHHHHHHcCC-ccH--------------HHHHHHHHHHHHHH
Confidence 444443333 4999999999998 46662 456665553321 111 01246778888776
Q ss_pred hHHHHHhhhccCCCCCcceeEec--CC--CEEEEee
Q psy10441 711 GYCVITYILGVGDRHFDNLLLTT--SG--KLFHIDF 742 (867)
Q Consensus 711 ~ysv~tYiLGIGDRH~dNIli~~--tG--~lfHIDF 742 (867)
...|++ .|=+++||++.. +| ++|=||-
T Consensus 136 ~~~Iv~-----~dl~~~NIv~~~~~~~~~~lvlIDG 166 (199)
T PF10707_consen 136 DHHIVI-----RDLNPHNIVVQRRDSGEFRLVLIDG 166 (199)
T ss_pred HcCCee-----cCCCcccEEEEecCCCceEEEEEeC
Confidence 666654 589999999984 44 4888883
No 286
>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha. Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw
Probab=32.74 E-value=5.3e+02 Score=28.28 Aligned_cols=46 Identities=30% Similarity=0.417 Sum_probs=31.6
Q ss_pred CCCCCcceeEecCCCEEEEeeccccCCCCC-------CCCCcccccHHHHHHh
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYILGRDPK-------PLPPPMKLSKEMVEAM 767 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~ilg~~~k-------~e~vPFrLT~~mv~~m 767 (867)
+|=.++||||+.+|++.=+|||........ ..-.|.-+.||++..+
T Consensus 126 rDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 178 (332)
T cd05623 126 RDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAM 178 (332)
T ss_pred cCCCHHHEEECCCCCEEEeecchheecccCCcceecccccCccccCHHHHhcc
Confidence 788899999999999999999976432110 1123334677877643
No 287
>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=32.61 E-value=4.5e+02 Score=28.15 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=22.9
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=.++||+|+++|.+.=+|||..-
T Consensus 162 ~dlkp~Nill~~~~~~kl~DfG~~~ 186 (304)
T cd05096 162 RDLATRNCLVGENLTIKIADFGMSR 186 (304)
T ss_pred cCcchhheEEcCCccEEECCCccce
Confidence 7999999999999999999999763
No 288
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=32.43 E-value=69 Score=40.07 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=58.2
Q ss_pred hhhHHhhhccccCCChHHHHHH-HHHhhccCCCCHhhHhhccC---C--CCCCHHHHHHHHHHhccCCchhHHHHHHH-H
Q psy10441 327 KKALTKFLECVNWELQAEARQA-LDLLDQWAPMDVEDSLQLLS---P--AFKHSAVRRYAVTRLQQASDEDLLLYLLQ-L 399 (867)
Q Consensus 327 p~aL~kfL~sV~W~~~~e~~~a-~~lL~~W~~i~~~~ALeLL~---~--~f~~~~VR~yAV~~L~~~~d~eL~~yLlQ-L 399 (867)
+.-++.+++.|. ++..|++.. |-.|...+...|+.||.... . .-++|.+|.+|++-|-.+.+.+|.-++.- +
T Consensus 54 ssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~i 132 (757)
T COG5096 54 SSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPI 132 (757)
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 455677788777 666677764 45777789999988776543 2 33689999999999999999996665554 6
Q ss_pred HHHhccc
Q psy10441 400 VQALKYE 406 (867)
Q Consensus 400 VQaLkyE 406 (867)
.|.|.+.
T Consensus 133 k~~l~d~ 139 (757)
T COG5096 133 KKLLTDP 139 (757)
T ss_pred HHHccCC
Confidence 6666655
No 289
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=32.43 E-value=1.6e+02 Score=31.46 Aligned_cols=109 Identities=13% Similarity=0.241 Sum_probs=64.1
Q ss_pred HHHhhhhHHHHHhhhccCCCCCcceeE--ecCCCEEEEeeccccCCCCCCCCCcccccHHHHHHhCCCCchhHHHHHHHH
Q psy10441 705 YVRSCAGYCVITYILGVGDRHFDNLLL--TTSGKLFHIDFGYILGRDPKPLPPPMKLSKEMVEAMGGINSEHYHEFRKQC 782 (867)
Q Consensus 705 F~~S~A~ysv~tYiLGIGDRH~dNIli--~~tG~lfHIDFG~ilg~~~k~e~vPFrLT~~mv~~mGg~~~~~~~~F~~~c 782 (867)
-.-.+.-.+|+=|++|=+|||--|+.= ...|-++|+|=|--||+....+..-+ -+ ...--.|+..-
T Consensus 88 rLldliDm~IFDFLigN~DRhhye~f~~fgn~~~l~~LDNgrgFG~~~~de~sIl----------aP--L~QcC~iRrST 155 (221)
T PF06702_consen 88 RLLDLIDMAIFDFLIGNMDRHHYETFNKFGNEGFLLHLDNGRGFGRPSHDELSIL----------AP--LYQCCRIRRST 155 (221)
T ss_pred hhhHHHHHHHHHHHhcCCcchhhhhhhccCCCceEEEEeCCcccCCCCCCccchh----------cc--HHHhhhccccH
Confidence 344566788999999999999988532 23577999999999998754432111 00 01112456555
Q ss_pred HHHHHHHhcChhHHHHHHHH-HhcCCCCCCCCCchHHHHHHHHHcC
Q psy10441 783 YTAFLHLRRHSNLILNLFTL-MVDASVPDIALEPDKAVKKVQDKFR 827 (867)
Q Consensus 783 ~~a~~~LR~~~~lil~l~~l-ml~~~ip~~~~~~~~~i~~l~~~l~ 827 (867)
......|++....+..++.- |..+.+.-+- .+.-+..+.+|+.
T Consensus 156 ~~rL~~l~~~~~~Ls~~m~~s~~~D~l~PvL--~e~Hl~AldrRL~ 199 (221)
T PF06702_consen 156 WERLQLLSKGGYRLSDLMRESLSRDPLAPVL--TEPHLEALDRRLD 199 (221)
T ss_pred HHHHHHhccCCCcHHHHHHHHhccCccCccC--cHHHHHHHHHHHH
Confidence 56666666555555554433 3333333222 2334666666653
No 290
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=31.74 E-value=5.6e+02 Score=27.47 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=23.5
Q ss_pred CCCCCcceeEecCCCEEEEeeccccC
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYILG 747 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~ilg 747 (867)
||=.++|||++.+|.+.=+|||....
T Consensus 140 ~dLkp~Nill~~~~~~kl~dfg~~~~ 165 (296)
T cd06654 140 RDIKSDNILLGMDGSVKLTDFGFCAQ 165 (296)
T ss_pred CCCCHHHEEEcCCCCEEECccccchh
Confidence 89999999999999999999997653
No 291
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=31.63 E-value=7.9e+02 Score=27.63 Aligned_cols=46 Identities=30% Similarity=0.430 Sum_probs=31.7
Q ss_pred CCCCCcceeEecCCCEEEEeeccccCCCCC-------CCCCcccccHHHHHHh
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYILGRDPK-------PLPPPMKLSKEMVEAM 767 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~ilg~~~k-------~e~vPFrLT~~mv~~m 767 (867)
+|=.++||||+++|++.=+|||........ ..-.|.=+.||++...
T Consensus 166 rDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~ 218 (371)
T cd05622 166 RDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQ 218 (371)
T ss_pred CCCCHHHEEECCCCCEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhcc
Confidence 788999999999999999999987432211 1123334567776554
No 292
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.07 E-value=1.5e+02 Score=31.13 Aligned_cols=124 Identities=14% Similarity=0.206 Sum_probs=67.9
Q ss_pred ccccEEEEecCCcce--eeeecCccHHHHHhhcCcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhc--cC
Q psy10441 647 LTPYRVLATNTKHGF--VQFVDSFPVAEVLATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILG--VG 722 (867)
Q Consensus 647 l~~Y~Vip~~~~~Gl--IE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLG--IG 722 (867)
+.+..|..+.+..|+ +|+|+...+.+.+... -.+.+++ .+-+----+--| =|
T Consensus 61 V~~P~v~dvD~~~~~I~me~I~G~~lkd~l~~~--~~~~~r~----------------------vG~~vg~lH~~givHG 116 (204)
T COG3642 61 VPVPIVYDVDPDNGLIVMEYIEGELLKDALEEA--RPDLLRE----------------------VGRLVGKLHKAGIVHG 116 (204)
T ss_pred CCCCeEEEEcCCCCEEEEEEeCChhHHHHHHhc--chHHHHH----------------------HHHHHHHHHhcCeecC
Confidence 446677888777765 6899988888777653 0111111 000000011112 28
Q ss_pred CCCCcceeEecCCCEEEEeeccccCCC-CCCCCCcccccHHHHHHhCCCCchhHHHHHHHHHHHHHHHhcChhHHHHH
Q psy10441 723 DRHFDNLLLTTSGKLFHIDFGYILGRD-PKPLPPPMKLSKEMVEAMGGINSEHYHEFRKQCYTAFLHLRRHSNLILNL 799 (867)
Q Consensus 723 DRH~dNIli~~tG~lfHIDFG~ilg~~-~k~e~vPFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~lil~l 799 (867)
|-...||++..++ ++-||||.-.-+. .....|..- -+..++..+..+ +..+...+..+|..-..-+..++..
T Consensus 117 DLTtsNiIl~~~~-i~~IDfGLg~~s~~~Ed~aVDl~---Vleral~sth~~-~e~l~~~f~~gY~~~~~~~~~Vl~~ 189 (204)
T COG3642 117 DLTTSNIILSGGR-IYFIDFGLGEFSDEVEDKAVDLH---VLERALESTHEK-AEELFAAFLEGYREEFGEAKEVLER 189 (204)
T ss_pred CCccceEEEeCCc-EEEEECCcccccccHHhhhchHH---HHHHHHHhcccc-HHHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999744 9999999764222 111233321 123345555444 5567777777775444434434333
No 293
>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou
Probab=30.62 E-value=1e+02 Score=32.69 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=23.0
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+|-.++|||++.+|.+.=+|||+.-
T Consensus 132 ~dikp~Nili~~~~~~kl~dfg~~~ 156 (288)
T cd07863 132 RDLKPENILVTSGGQVKLADFGLAR 156 (288)
T ss_pred CCCCHHHEEECCCCCEEECccCccc
Confidence 8999999999999999999999763
No 294
>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins. Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha
Probab=30.50 E-value=1.1e+02 Score=31.81 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=22.2
Q ss_pred CCCCCcceeEecCCCEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
||=+++|||++.+|.+-=+|||..
T Consensus 109 ~dlkp~Nil~~~~~~~~l~df~~~ 132 (237)
T cd05576 109 RDLNPNNILLDDRGHIQLTYFSRW 132 (237)
T ss_pred cCCCHHHEEEcCCCCEEEecccch
Confidence 799999999999999999999964
No 295
>smart00090 RIO RIO-like kinase.
Probab=30.27 E-value=35 Score=36.48 Aligned_cols=44 Identities=23% Similarity=0.180 Sum_probs=31.0
Q ss_pred HHHHHHhhhhHHHHHhhhc-c--CCCCCcceeEecCCCEEEEeecccc
Q psy10441 702 MDTYVRSCAGYCVITYILG-V--GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 702 ~~~F~~S~A~ysv~tYiLG-I--GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
...+..+++...---+--| | ||=|++|||++ +|++.=||||...
T Consensus 150 ~~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli~-~~~i~LiDFg~a~ 196 (237)
T smart00090 150 EFELYDDILEEMRKLYKEGELVHGDLSEYNILVH-DGKVVIIDVSQSV 196 (237)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEeCCCChhhEEEE-CCCEEEEEChhhh
Confidence 3455555554333333345 4 79999999999 8999999999764
No 296
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=30.20 E-value=85 Score=25.72 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=35.6
Q ss_pred CCCCCCCCC-chHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Q psy10441 806 ASVPDIALE-PDKAVKKVQDKFRLDLGDEEAVHYLQNLIDLSVT 848 (867)
Q Consensus 806 ~~ip~~~~~-~~~~i~~l~~~l~l~lseeeA~~~~~~lI~~s~~ 848 (867)
+++|.++.+ ...+|.++++-..-++|..||+..+-+.|.+...
T Consensus 3 ~~lp~LtHeeQQ~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~~~ 46 (51)
T PF03701_consen 3 NDLPSLTHEEQQQAVERIQELMAQGMSSGEAIAIVAQEIREEHQ 46 (51)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 678888763 4578999999999999999999999988887643
No 297
>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk
Probab=30.18 E-value=6.3e+02 Score=26.03 Aligned_cols=48 Identities=13% Similarity=-0.064 Sum_probs=32.6
Q ss_pred HHHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCCCEEEEeeccccCC
Q psy10441 701 IMDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSGKLFHIDFGYILGR 748 (867)
Q Consensus 701 a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG~lfHIDFG~ilg~ 748 (867)
....++..++.-...-+=-|+ ||-+++||+++.+|.+.=+|||.....
T Consensus 103 ~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~ 152 (256)
T cd05039 103 QQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEA 152 (256)
T ss_pred HHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEccccccccc
Confidence 444454444433333333443 799999999999999999999987543
No 298
>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r
Probab=29.68 E-value=6.5e+02 Score=26.57 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=22.0
Q ss_pred CCCCCcceeEecCCCEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
+|-.++|||++.+|.+.-+|||..
T Consensus 133 ~dlkp~nili~~~~~~kl~Dfg~~ 156 (279)
T cd05111 133 RNLAARNILLKSDSIVQIADFGVA 156 (279)
T ss_pred cccCcceEEEcCCCcEEEcCCccc
Confidence 677899999999999999999987
No 299
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=29.64 E-value=49 Score=33.80 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=34.5
Q ss_pred CHhhHhhccCCCCCCHHHHHHHHHHhccCC-c-hhHHHHHHH---HHHHhcccc
Q psy10441 359 DVEDSLQLLSPAFKHSAVRRYAVTRLQQAS-D-EDLLLYLLQ---LVQALKYEN 407 (867)
Q Consensus 359 ~~~~ALeLL~~~f~~~~VR~yAV~~L~~~~-d-~eL~~yLlQ---LVQaLkyE~ 407 (867)
+..-|+.||+-.=.+|.+++.|++-|.++. . |++..-|++ .++||||=.
T Consensus 60 Sk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~vl~ALr~ar 113 (167)
T PF07035_consen 60 SKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQVLEALRYAR 113 (167)
T ss_pred cHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 344445555544457999999999999977 4 556555554 999999853
No 300
>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi
Probab=29.45 E-value=6.5e+02 Score=26.00 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=24.8
Q ss_pred hccCCCCCcceeEecCCCEEEEeecccc
Q psy10441 719 LGVGDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 719 LGIGDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+--||=+++||+++.+|.+.=+|||+.-
T Consensus 114 ~~h~dl~~~nilv~~~~~~~l~df~~~~ 141 (262)
T cd05572 114 IIYRDLKPENLLLDSNGYVKLVDFGFAK 141 (262)
T ss_pred cccCCCCHHHEEEcCCCCEEEeeCCccc
Confidence 4558999999999999999999999874
No 301
>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a
Probab=29.44 E-value=1.3e+02 Score=31.50 Aligned_cols=25 Identities=24% Similarity=0.204 Sum_probs=23.0
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=+++||+++++|.+.=+|||...
T Consensus 127 ~dl~p~Nil~~~~~~~~l~dfg~~~ 151 (261)
T cd05068 127 RDLAARNVLVGENNICKVADFGLAR 151 (261)
T ss_pred ccCCcceEEEcCCCCEEECCcceEE
Confidence 8999999999999999999999764
No 302
>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k
Probab=29.40 E-value=6.2e+02 Score=25.93 Aligned_cols=26 Identities=27% Similarity=0.174 Sum_probs=23.8
Q ss_pred cCCCCCcceeEecCCCEEEEeecccc
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~il 746 (867)
-||=.++||||+.+|++-=+|||..-
T Consensus 116 h~di~p~nili~~~~~~~l~d~g~~~ 141 (251)
T cd05041 116 HRDLAARNCLVGENNVLKISDFGMSR 141 (251)
T ss_pred hhhcCcceEEEcCCCcEEEeeccccc
Confidence 48999999999999999999999875
No 303
>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l
Probab=29.13 E-value=6.8e+02 Score=26.14 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhhHHHHHhhh--c--cCCCCCcceeEecCCCEEEEeeccccC
Q psy10441 700 EIMDTYVRSCAGYCVITYIL--G--VGDRHFDNLLLTTSGKLFHIDFGYILG 747 (867)
Q Consensus 700 ~a~~~F~~S~A~ysv~tYiL--G--IGDRH~dNIli~~tG~lfHIDFG~ilg 747 (867)
+....++..++ ..+.|+= | =||-.++|||++.+|.+--+|||..-+
T Consensus 112 ~~~~~~~~~i~--~al~~lH~~~i~H~dikp~nili~~~~~~kl~dfgl~~~ 161 (270)
T cd05047 112 QQLLHFAADVA--RGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRG 161 (270)
T ss_pred HHHHHHHHHHH--HHHHHHHHCCEeecccccceEEEcCCCeEEECCCCCccc
Confidence 34455555555 2233332 2 268889999999999999999998654
No 304
>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica
Probab=29.08 E-value=6.1e+02 Score=28.06 Aligned_cols=25 Identities=40% Similarity=0.510 Sum_probs=22.7
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=.++||||+.+|++-=+|||..-
T Consensus 125 ~Dlkp~NIl~~~~~~~kl~Dfg~~~ 149 (364)
T cd05599 125 RDIKPDNLLLDAKGHIKLSDFGLCT 149 (364)
T ss_pred ccCCHHHeEECCCCCEEEeecccce
Confidence 7888999999999999999999763
No 305
>KOG0603|consensus
Probab=28.91 E-value=36 Score=41.16 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=24.8
Q ss_pred cCCCCCcceeEe-cCCCEEEEeeccccCC
Q psy10441 721 VGDRHFDNLLLT-TSGKLFHIDFGYILGR 748 (867)
Q Consensus 721 IGDRH~dNIli~-~tG~lfHIDFG~ilg~ 748 (867)
.+|-|++|||++ ..|++--+|||+.-+.
T Consensus 438 hRDLkp~NIL~~~~~g~lrltyFG~a~~~ 466 (612)
T KOG0603|consen 438 HRDLKPGNILLDGSAGHLRLTYFGFWSEL 466 (612)
T ss_pred ecCCChhheeecCCCCcEEEEEechhhhC
Confidence 589999999995 8999999999998654
No 306
>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=28.90 E-value=7.5e+02 Score=26.51 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=23.7
Q ss_pred cCCCCCcceeEecCCCEEEEeecccc
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~il 746 (867)
-||-+++||+++.+|.+.=+|||..-
T Consensus 138 H~dL~p~Nili~~~~~~kl~dfg~~~ 163 (296)
T cd06655 138 HRDIKSDNVLLGMDGSVKLTDFGFCA 163 (296)
T ss_pred cCCCCHHHEEECCCCCEEEccCccch
Confidence 48999999999999999999999764
No 307
>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells
Probab=28.86 E-value=1.1e+02 Score=32.07 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=22.8
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+|-.++|||++.+|++.=+|||..-
T Consensus 124 ~dlkp~nil~~~~~~~kL~dfg~~~ 148 (269)
T cd05087 124 SDLALRNCLLTADLTVKIGDYGLSH 148 (269)
T ss_pred cccCcceEEEcCCCcEEECCccccc
Confidence 7889999999999999999999763
No 308
>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I
Probab=28.77 E-value=7.4e+02 Score=26.91 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.8
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+|=+++|||++.+|.+.=+|||..-
T Consensus 120 rDlkp~Nil~~~~~~~kl~Dfg~~~ 144 (316)
T cd05620 120 RDLKLDNVMLDRDGHIKIADFGMCK 144 (316)
T ss_pred cCCCHHHeEECCCCCEEeCccCCCe
Confidence 7889999999999999999999754
No 309
>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular
Probab=28.70 E-value=6.3e+02 Score=25.93 Aligned_cols=25 Identities=32% Similarity=0.244 Sum_probs=22.8
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=+++|||++.+|++.=+|||..-
T Consensus 118 ~dl~p~nil~~~~~~~kl~dfg~~~ 142 (252)
T cd05084 118 RDLAARNCLVTEKNVLKISDFGMSR 142 (252)
T ss_pred cccchheEEEcCCCcEEECccccCc
Confidence 7889999999999999999999864
No 310
>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista
Probab=28.59 E-value=43 Score=35.23 Aligned_cols=32 Identities=31% Similarity=0.359 Sum_probs=24.0
Q ss_pred HhhhccCCCCCcceeEecCCCEEEEeeccc-cC
Q psy10441 716 TYILGVGDRHFDNLLLTTSGKLFHIDFGYI-LG 747 (867)
Q Consensus 716 tYiLGIGDRH~dNIli~~tG~lfHIDFG~i-lg 747 (867)
.+.|==||=|++|||++..+-.--|||+.+ .|
T Consensus 163 ~~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~~g 195 (235)
T cd05155 163 PPVWFHGDLAPGNLLVQDGRLSAVIDFGCLGVG 195 (235)
T ss_pred CceEEeCCCCCCcEEEECCCEEEEEeCcccCcC
Confidence 445667999999999986433358999986 44
No 311
>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki
Probab=28.36 E-value=1.3e+02 Score=31.14 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=23.5
Q ss_pred CCCCCcceeEecCCCEEEEeeccccC
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYILG 747 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~ilg 747 (867)
||=+++||+++.+|.+-=+|||....
T Consensus 124 ~dl~p~nili~~~~~~kl~Dfg~~~~ 149 (254)
T cd05083 124 RDLAARNILVSEDGVAKVSDFGLARV 149 (254)
T ss_pred cccCcceEEEcCCCcEEECCCcccee
Confidence 89999999999999999999998753
No 312
>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in
Probab=28.23 E-value=8.1e+02 Score=26.68 Aligned_cols=25 Identities=40% Similarity=0.600 Sum_probs=22.9
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+|-.++|||++++|.+--+|||..-
T Consensus 120 rdikp~Nil~~~~~~~kl~Dfg~~~ 144 (316)
T cd05619 120 RDLKLDNILLDTDGHIKIADFGMCK 144 (316)
T ss_pred CCCCHHHEEECCCCCEEEccCCcce
Confidence 7889999999999999999999764
No 313
>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a
Probab=28.02 E-value=6.8e+02 Score=25.77 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=22.7
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=+++||+++.+|.+.=+|||...
T Consensus 130 ~dl~p~nil~~~~~~~~l~d~~~~~ 154 (267)
T cd08224 130 RDIKPANVFITATGVVKLGDLGLGR 154 (267)
T ss_pred CCcChhhEEECCCCcEEEeccceee
Confidence 8999999999999999999999753
No 314
>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g
Probab=27.83 E-value=7.5e+02 Score=26.16 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.2
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+|=.++||||+.+|.+.=+|||...
T Consensus 121 ~dlkp~Nili~~~~~~~l~dfg~~~ 145 (280)
T cd05608 121 RDLKPENVLLDNDGNVRISDLGLAV 145 (280)
T ss_pred CCCCHHHEEECCCCCEEEeeCccce
Confidence 6777899999999999999999864
No 315
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=27.68 E-value=1.3e+02 Score=27.84 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=37.2
Q ss_pred EEEEEEEECCeeeecceecccccCCCCccccceEEeccccCCcCccceEEEEEEE
Q psy10441 59 VVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYD 113 (867)
Q Consensus 59 ~V~~ql~~g~~~L~~pv~T~~~~f~~~~~Wnewl~fpI~~~dLPr~a~L~~tI~~ 113 (867)
-|.|.|--+++.++ +|+.+|- +...||+.++| +|-|+--|-|.||=
T Consensus 10 eV~avLklDn~~Vg---qT~Wk~~-s~q~WDQ~Fti-----~LdRsRELEI~Vyw 55 (98)
T cd08687 10 EVSAVLKLDNTVVG---QTQWKPK-SNQAWDQSFTL-----ELERSRELEIAVYW 55 (98)
T ss_pred ceEEEEEEcCeEEe---ecccccc-ccccccceeEE-----EeecccEEEEEEEE
Confidence 47788888998887 7888887 45779999998 56788888888874
No 316
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=27.48 E-value=6.9e+02 Score=26.97 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.6
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+|=.++|||++.+|.+.=+|||..-
T Consensus 133 ~dlkp~Nill~~~~~~kl~DfG~a~ 157 (316)
T cd05108 133 RDLAARNVLVKTPQHVKITDFGLAK 157 (316)
T ss_pred cccchhheEecCCCcEEEccccccc
Confidence 6888999999999999999999874
No 317
>PRK10345 hypothetical protein; Provisional
Probab=27.41 E-value=1.5e+02 Score=31.22 Aligned_cols=22 Identities=14% Similarity=-0.108 Sum_probs=18.1
Q ss_pred cCCCCCcceeEecC----CCEEEEee
Q psy10441 721 VGDRHFDNLLLTTS----GKLFHIDF 742 (867)
Q Consensus 721 IGDRH~dNIli~~t----G~lfHIDF 742 (867)
..|=.++|||+++. ++++=|||
T Consensus 128 hrDlKp~NILl~~~~~~~~~~~LiDg 153 (210)
T PRK10345 128 TMELKPQNILCQRISESEVIPVVCDN 153 (210)
T ss_pred ecCCCHHHEEEeccCCCCCcEEEEEC
Confidence 57889999999853 37999995
No 318
>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul
Probab=27.37 E-value=7.2e+02 Score=25.85 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=23.4
Q ss_pred cCCCCCcceeEecCCCEEEEeecccc
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~il 746 (867)
-||-+++|||++.+|++.=+|||..-
T Consensus 129 h~dlkp~nili~~~~~~~l~dfg~~~ 154 (267)
T cd05066 129 HRDLAARNILVNSNLVCKVSDFGLSR 154 (267)
T ss_pred ehhhchhcEEECCCCeEEeCCCCccc
Confidence 38999999999999999999999764
No 319
>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl. Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor
Probab=27.34 E-value=1.4e+02 Score=31.17 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.6
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+|=.++|||++++|.+.-+|||..-
T Consensus 136 ~dlkp~Nil~~~~~~~kl~Dfg~~~ 160 (272)
T cd05075 136 RDLAARNCMLNENMNVCVADFGLSK 160 (272)
T ss_pred cccchhheEEcCCCCEEECCCCccc
Confidence 7888999999999999999999864
No 320
>KOG0662|consensus
Probab=27.05 E-value=1.2e+02 Score=31.47 Aligned_cols=50 Identities=30% Similarity=0.534 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhh---hHHHHHhhhccCCCCCcceeEecCCCEEEEeeccc--cCCC
Q psy10441 699 SEIMDTYVRSCA---GYCVITYILGVGDRHFDNLLLTTSGKLFHIDFGYI--LGRD 749 (867)
Q Consensus 699 ~~a~~~F~~S~A---~ysv~tYiLGIGDRH~dNIli~~tG~lfHIDFG~i--lg~~ 749 (867)
++..+.|+-.+- |+|-.-.||. .|-.+.|++|+++|.+=-.|||.. ||..
T Consensus 100 ~~~~rsfmlqllrgl~fchshnvlh-rdlkpqnllin~ngelkladfglarafgip 154 (292)
T KOG0662|consen 100 PEIVRSFMLQLLRGLGFCHSHNVLH-RDLKPQNLLINRNGELKLADFGLARAFGIP 154 (292)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhh-ccCCcceEEeccCCcEEecccchhhhcCCc
Confidence 556666665542 3454445554 578899999999999999999985 6654
No 321
>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo
Probab=26.94 E-value=52 Score=34.32 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=27.1
Q ss_pred HhhhccCCCCCcceeEec-CCCEEEEeeccccCC
Q psy10441 716 TYILGVGDRHFDNLLLTT-SGKLFHIDFGYILGR 748 (867)
Q Consensus 716 tYiLGIGDRH~dNIli~~-tG~lfHIDFG~ilg~ 748 (867)
..+|-=||=|++|||++. +|.+.=|||-+.--.
T Consensus 169 ~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~~~ 202 (235)
T cd05157 169 PIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGYN 202 (235)
T ss_pred CEEEEcCCCCcCcEEEeCCCCCEEEEEcccCCcC
Confidence 356667999999999998 688999999877433
No 322
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=26.79 E-value=1.4e+02 Score=32.35 Aligned_cols=46 Identities=17% Similarity=0.031 Sum_probs=30.7
Q ss_pred HHHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCCCEEEEeecccc
Q psy10441 701 IMDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 701 a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
.+..++..+|.-...-+=.|+ +|-+++|||++++|.+.=+|||..-
T Consensus 141 ~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~~~~kL~dfg~a~ 188 (307)
T cd05098 141 DLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLAR 188 (307)
T ss_pred HHHHHHHHHHHHHHHHHHCCcccccccHHheEEcCCCcEEECCCcccc
Confidence 344455554422222223343 7888999999999999999999863
No 323
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=26.73 E-value=81 Score=34.05 Aligned_cols=45 Identities=24% Similarity=0.329 Sum_probs=31.0
Q ss_pred HHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCCCEEEEeecccc
Q psy10441 702 MDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 702 ~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
...++..++...-..+-.|+ ||=++.||+++++|++.=+|||..-
T Consensus 118 ~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~~ 164 (292)
T cd06657 118 IAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCA 164 (292)
T ss_pred HHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccce
Confidence 33444444433333333444 9999999999999999989999764
No 324
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=26.68 E-value=1.9e+02 Score=30.57 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=23.2
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||-+++||+|+++|.+.=+|||...
T Consensus 145 ~dl~~~nili~~~~~~~l~dfg~~~ 169 (282)
T cd06636 145 RDIKGQNVLLTENAEVKLVDFGVSA 169 (282)
T ss_pred CCCCHHHEEECCCCCEEEeeCcchh
Confidence 8999999999999999999999865
No 325
>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional
Probab=26.61 E-value=4.4e+02 Score=27.79 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=38.3
Q ss_pred HHHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCC-CEEEEeeccccCCCC--CCCCCcccccHHHHHH
Q psy10441 701 IMDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSG-KLFHIDFGYILGRDP--KPLPPPMKLSKEMVEA 766 (867)
Q Consensus 701 a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG-~lfHIDFG~ilg~~~--k~e~vPFrLT~~mv~~ 766 (867)
....++..++--.-.-+-.|+ ||=.++|||++++| ++.=+|||..-.... .....+.-+.||+...
T Consensus 110 ~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~y~aPE~~~~ 180 (267)
T PHA03390 110 EVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPSCYDGTLDYFSPEKIKG 180 (267)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccceecCCCccCCCCCcccChhhhcC
Confidence 344444444433333333444 78899999999877 999999997643221 1122233345666543
No 326
>PRK05114 hypothetical protein; Provisional
Probab=26.36 E-value=99 Score=26.03 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=36.9
Q ss_pred CCCCCCCCC-chHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhh
Q psy10441 806 ASVPDIALE-PDKAVKKVQDKFRLDLGDEEAVHYLQNLIDLSVTA 849 (867)
Q Consensus 806 ~~ip~~~~~-~~~~i~~l~~~l~l~lseeeA~~~~~~lI~~s~~s 849 (867)
+++|.++.+ ...+|.++++-..-++|..||+..+-..|.+....
T Consensus 3 ~~lp~LtHeeQQ~AVErIq~LMaqGmSsgEAI~~VA~eiRe~~~~ 47 (59)
T PRK05114 3 AGLPSLTHEQQQKAVERIQELMAQGMSSGEAIALVAEELRANHQG 47 (59)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhc
Confidence 378888763 45789999999999999999999999999887654
No 327
>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage
Probab=26.07 E-value=1.3e+02 Score=31.70 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=22.7
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
+|-.++|||++.+|++.=+|||...
T Consensus 123 ~dikp~nil~~~~~~~~l~Dfg~~~ 147 (268)
T cd05086 123 SDLALRNCFLTSDLTVKVGDYGIGP 147 (268)
T ss_pred cCCccceEEEcCCccEEeccccccc
Confidence 7889999999999999999999764
No 328
>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I
Probab=25.92 E-value=82 Score=32.85 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=23.3
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||-+++||+++.+|++.-+|||...
T Consensus 137 ~~l~p~ni~~~~~~~~~l~d~~~~~ 161 (275)
T cd06608 137 RDIKGQNILLTKNAEVKLVDFGVSA 161 (275)
T ss_pred CCCCHHHEEEccCCeEEECCCccce
Confidence 8999999999999999999999864
No 329
>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including
Probab=25.87 E-value=8.2e+02 Score=25.98 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=22.7
Q ss_pred cCCCCCcceeEecCCCEEEEeeccc
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~i 745 (867)
-||-+++|||++++|.+-=+|||..
T Consensus 152 H~dlkp~Nill~~~~~~kl~dfg~~ 176 (295)
T cd05097 152 HRDLATRNCLVGNHYTIKIADFGMS 176 (295)
T ss_pred ccccChhhEEEcCCCcEEecccccc
Confidence 4799999999999999999999976
No 330
>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]
Probab=25.63 E-value=53 Score=35.99 Aligned_cols=34 Identities=41% Similarity=0.515 Sum_probs=29.5
Q ss_pred hhhccCCCCCcceeEecCCCEEEEeeccccCCCC
Q psy10441 717 YILGVGDRHFDNLLLTTSGKLFHIDFGYILGRDP 750 (867)
Q Consensus 717 YiLGIGDRH~dNIli~~tG~lfHIDFG~ilg~~~ 750 (867)
+++.=||=|++|++.++.|.++=|||-+.--++|
T Consensus 153 ~v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg~~D~ 186 (269)
T COG0510 153 LVPCHNDLNPGNLLLTDKGGLFLIDWEYAGLNDP 186 (269)
T ss_pred eeeecCCCCccceEEcCCCcEEEEecccCCCccH
Confidence 5666799999999999999999999999865554
No 331
>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory
Probab=25.58 E-value=8.1e+02 Score=25.80 Aligned_cols=25 Identities=24% Similarity=0.077 Sum_probs=22.5
Q ss_pred cCCCCCcceeEecCCCEEEEeeccc
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~i 745 (867)
-||-.++|||++++|.+.-+|||..
T Consensus 145 H~dlkp~nil~~~~~~~kL~dfg~~ 169 (280)
T cd05092 145 HRDLATRNCLVGQGLVVKIGDFGMS 169 (280)
T ss_pred cccccHhhEEEcCCCCEEECCCCce
Confidence 3788899999999999999999976
No 332
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=25.49 E-value=36 Score=35.25 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=31.3
Q ss_pred CCCCCcceeEecCCCEEEEeeccccC--C-CC---CCCCCcccccHHHHH
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYILG--R-DP---KPLPPPMKLSKEMVE 765 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~ilg--~-~~---k~e~vPFrLT~~mv~ 765 (867)
+|=.++|||++++|++.-+|||...- . .. .....+.=..||++.
T Consensus 122 ~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~ 171 (260)
T PF00069_consen 122 RDIKPENILLDENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQ 171 (260)
T ss_dssp SSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 78899999999999999999999752 2 11 112344446677765
No 333
>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2.7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....
Probab=25.31 E-value=45 Score=34.46 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=21.0
Q ss_pred hhhccCCCCCcceeE-ecCCCEEEEeeccc
Q psy10441 717 YILGVGDRHFDNLLL-TTSGKLFHIDFGYI 745 (867)
Q Consensus 717 YiLGIGDRH~dNIli-~~tG~lfHIDFG~i 745 (867)
.++.=+|=|++|||+ +++|++.=|||-|.
T Consensus 143 ~v~cHnDl~~~Nil~~~~~~~~~lIDfEya 172 (211)
T PF01633_consen 143 LVFCHNDLNPGNILINNKDGEVKLIDFEYA 172 (211)
T ss_dssp EEEE-S--SGGGEEETSSSSCEEE--GTT-
T ss_pred ceEeeccCccccEEeccCCCeEEEecHHHH
Confidence 678889999999999 67999999999886
No 334
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=25.30 E-value=76 Score=27.45 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHhccCCchhHHHHHHHHHHHhc
Q psy10441 372 KHSAVRRYAVTRLQQASDEDLLLYLLQLVQALK 404 (867)
Q Consensus 372 ~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLk 404 (867)
+++.||..|+.+|.+..+++.. +.|+++|+
T Consensus 12 ~~~~vr~~a~~~L~~~~~~~~~---~~L~~~l~ 41 (88)
T PF13646_consen 12 PDPQVRAEAARALGELGDPEAI---PALIELLK 41 (88)
T ss_dssp SSHHHHHHHHHHHHCCTHHHHH---HHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCHhHH---HHHHHHHc
Confidence 5789999999999999888774 45555554
No 335
>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament
Probab=25.27 E-value=85 Score=33.67 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=23.0
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=.++|||++.+|++.=+|||..-
T Consensus 127 ~dlkp~Nil~~~~~~~kl~DfG~~~ 151 (288)
T cd07871 127 RDLKPQNLLINEKGELKLADFGLAR 151 (288)
T ss_pred CCCCHHHEEECCCCCEEECcCccee
Confidence 7899999999999999999999864
No 336
>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer
Probab=24.95 E-value=6e+02 Score=26.62 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=22.5
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||-.++||+++++|.+.=+|||...
T Consensus 148 ~dlkp~Nil~~~~~~~~L~dfg~~~ 172 (283)
T cd05048 148 RDLAARNCLVGEGLTVKISDFGLSR 172 (283)
T ss_pred cccccceEEEcCCCcEEECCCccee
Confidence 6999999999999999889999763
No 337
>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut
Probab=24.92 E-value=1.8e+02 Score=30.45 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=23.0
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||-+++||+++.+|.+.=+|||..-
T Consensus 133 ~dl~p~nil~~~~~~~~l~dfg~~~ 157 (284)
T cd05038 133 RDLAARNILVESEDLVKISDFGLAK 157 (284)
T ss_pred CCCCHHhEEEcCCCCEEEccccccc
Confidence 8999999999999999999999764
No 338
>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati
Probab=24.57 E-value=1.9e+02 Score=29.96 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=22.9
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=.++|||++++|.+.=+|||...
T Consensus 124 ~dl~p~nili~~~~~~~l~dfg~~~ 148 (255)
T cd08219 124 RDIKSKNIFLTQNGKVKLGDFGSAR 148 (255)
T ss_pred CCCCcceEEECCCCcEEEcccCcce
Confidence 7889999999999999999999874
No 339
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.49 E-value=93 Score=25.90 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=35.7
Q ss_pred cCCCCCCCCC-chHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Q psy10441 805 DASVPDIALE-PDKAVKKVQDKFRLDLGDEEAVHYLQNLIDLSVT 848 (867)
Q Consensus 805 ~~~ip~~~~~-~~~~i~~l~~~l~l~lseeeA~~~~~~lI~~s~~ 848 (867)
.+++|.++.+ ..++|.++++-..-++|..||+..+-..|.+--.
T Consensus 2 ~~~lp~LtHeqQQ~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~hk 46 (60)
T COG3140 2 FAGLPSLTHEQQQKAVERIQELMAEGMSSGEAIALVAQELRENHK 46 (60)
T ss_pred CCccccccHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHhc
Confidence 4678888763 3578999999999999999999999888877543
No 340
>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase. Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M
Probab=24.38 E-value=1.6e+02 Score=31.24 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=22.8
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||-+++|||++.+|.+.=+|||..-
T Consensus 154 ~dl~p~nil~~~~~~~~l~dfg~~~ 178 (288)
T cd05050 154 RDLATRNCLVGENMVVKIADFGLSR 178 (288)
T ss_pred ccccHhheEecCCCceEECccccce
Confidence 7899999999999999999999764
No 341
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=24.32 E-value=8.7e+02 Score=25.73 Aligned_cols=24 Identities=38% Similarity=0.645 Sum_probs=22.4
Q ss_pred CCCCCcceeEecCCCEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
||=++.||+++.+|.+.=+|||..
T Consensus 139 ~dl~p~Nil~~~~~~~~l~d~g~~ 162 (285)
T cd06648 139 RDIKSDSILLTSDGRVKLSDFGFC 162 (285)
T ss_pred CCCChhhEEEcCCCcEEEcccccc
Confidence 899999999999999999999965
No 342
>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase. Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm
Probab=23.98 E-value=6.1e+02 Score=26.77 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhhHHHHHhhhcc--CCCCCcceeEec-CCCEEEEeeccc
Q psy10441 700 EIMDTYVRSCAGYCVITYILGV--GDRHFDNLLLTT-SGKLFHIDFGYI 745 (867)
Q Consensus 700 ~a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~-tG~lfHIDFG~i 745 (867)
+....++..+|.-.-.-+=.|| ||-+++|||++. +|.+-=+|||..
T Consensus 110 ~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~ 158 (295)
T cd07837 110 KTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLG 158 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEeecccc
Confidence 3444444444422222223344 889999999998 888888999965
No 343
>PRK09687 putative lyase; Provisional
Probab=23.88 E-value=1.1e+02 Score=33.57 Aligned_cols=77 Identities=19% Similarity=0.156 Sum_probs=46.9
Q ss_pred hchhhHHhhhccccCCChHHHHHHHHHhhccCCCCHhhHhhccCCCC--CCHHHHHHHHHHhccCCchhHHHHHHHHHHH
Q psy10441 325 NQKKALTKFLECVNWELQAEARQALDLLDQWAPMDVEDSLQLLSPAF--KHSAVRRYAVTRLQQASDEDLLLYLLQLVQA 402 (867)
Q Consensus 325 ~~p~aL~kfL~sV~W~~~~e~~~a~~lL~~W~~i~~~~ALeLL~~~f--~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQa 402 (867)
.++++++-++..++=.++.-...|..-|.... .+...+.+.|-..- .|+.||..|+..|.+..+.+ -+|.|+.+
T Consensus 156 ~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~-~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~---av~~Li~~ 231 (280)
T PRK09687 156 NDEAAIPLLINLLKDPNGDVRNWAAFALNSNK-YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKR---VLSVLIKE 231 (280)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChh---HHHHHHHH
Confidence 35777777776665444433344555666663 22334444433322 37799999999998888865 45566666
Q ss_pred hcc
Q psy10441 403 LKY 405 (867)
Q Consensus 403 Lky 405 (867)
|+.
T Consensus 232 L~~ 234 (280)
T PRK09687 232 LKK 234 (280)
T ss_pred HcC
Confidence 664
No 344
>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with
Probab=23.72 E-value=8.9e+02 Score=25.64 Aligned_cols=46 Identities=17% Similarity=0.040 Sum_probs=30.9
Q ss_pred HHHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCCCEEEEeecccc
Q psy10441 701 IMDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 701 a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
....++..++.--..-+-.|| +|=+++|||++++|.+-=+|||...
T Consensus 103 ~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~ 150 (285)
T cd05632 103 RALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAV 150 (285)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcce
Confidence 344444444432222233455 7889999999999999999999774
No 345
>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also
Probab=23.60 E-value=1.5e+02 Score=31.24 Aligned_cols=46 Identities=24% Similarity=0.269 Sum_probs=31.6
Q ss_pred HHHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCCCEEEEeecccc
Q psy10441 701 IMDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 701 a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
....++..++---..-+-.|| ||=+++|||++.+|.+.=+|||..-
T Consensus 100 ~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~ 147 (284)
T cd07839 100 IVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLAR 147 (284)
T ss_pred HHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhh
Confidence 344444444433333334455 8889999999999999999999763
No 346
>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase. Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=23.34 E-value=9e+02 Score=25.56 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=23.0
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=+++||+++.+|++.=+|||...
T Consensus 134 ~dlkp~Nili~~~~~~kl~dfg~~~ 158 (292)
T cd06644 134 RDLKAGNVLLTLDGDIKLADFGVSA 158 (292)
T ss_pred cCCCcceEEEcCCCCEEEccCccce
Confidence 8999999999999999999999754
No 347
>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
Probab=23.34 E-value=6.4e+02 Score=26.08 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.8
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=+++||+++++|.+.=+|||..-
T Consensus 130 ~di~p~nil~~~~~~~~l~dfg~~~ 154 (267)
T cd06628 130 RDIKGANILVDNKGGIKISDFGISK 154 (267)
T ss_pred ccCCHHHEEEcCCCCEEecccCCCc
Confidence 7999999999999999999999753
No 348
>COG2337 MazF Growth inhibitor [Signal transduction mechanisms]
Probab=23.05 E-value=51 Score=31.30 Aligned_cols=40 Identities=20% Similarity=0.484 Sum_probs=34.9
Q ss_pred eEecCCCEEEEeeccccCCCCCCCCCcccccHHHHHHhCC
Q psy10441 730 LLTTSGKLFHIDFGYILGRDPKPLPPPMKLSKEMVEAMGG 769 (867)
Q Consensus 730 li~~tG~lfHIDFG~ilg~~~k~e~vPFrLT~~mv~~mGg 769 (867)
|+.+.|.++++|||...|+....-++.-.++++..+..++
T Consensus 1 ~~~~rg~i~~~~l~p~~g~e~~~~RP~vvls~~~~n~~~~ 40 (112)
T COG2337 1 MIPKRGDIYLVDLGPVVGSEQGGARPAVVLSPDAANNHLG 40 (112)
T ss_pred CCcccccEEEecCCCccccccCCcccEEEEcchHhcccCC
Confidence 4567899999999999999988889999999999888654
No 349
>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n
Probab=22.92 E-value=2e+02 Score=30.63 Aligned_cols=25 Identities=24% Similarity=0.084 Sum_probs=22.6
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||-.++|||++.+|.+.=+|||..-
T Consensus 147 ~dlkp~Nil~~~~~~~~l~dfg~a~ 171 (291)
T cd05094 147 RDLATRNCLVGANLLVKIGDFGMSR 171 (291)
T ss_pred cccCcceEEEccCCcEEECCCCccc
Confidence 6888999999999999999999864
No 350
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=22.59 E-value=1.2e+02 Score=33.77 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=23.1
Q ss_pred CCCCCcceeEecCCCEEEEeecccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
||=.++|||++.+|.+.-+|||..-
T Consensus 150 ~Dlkp~NIll~~~~~~kL~DfG~a~ 174 (364)
T cd07875 150 RDLKPSNIVVKSDCTLKILDFGLAR 174 (364)
T ss_pred CCCCHHHEEECCCCcEEEEeCCCcc
Confidence 7889999999999999999999874
No 351
>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of
Probab=21.84 E-value=8.7e+02 Score=24.84 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=23.6
Q ss_pred cCCCCCcceeEecCCCEEEEeeccccC
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYILG 747 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~ilg 747 (867)
-||-+++||+++++|.+.=+|||..-.
T Consensus 123 H~~l~~~ni~~~~~~~~~l~df~~~~~ 149 (264)
T cd06623 123 HRDIKPSNLLINSKGEVKIADFGISKV 149 (264)
T ss_pred cCCCCHHHEEECCCCCEEEccCcccee
Confidence 378899999999999999999997643
No 352
>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1. Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.
Probab=21.80 E-value=9.8e+02 Score=25.44 Aligned_cols=26 Identities=27% Similarity=0.218 Sum_probs=23.2
Q ss_pred CCCCCcceeEecCCCEEEEeeccccC
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYILG 747 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~ilg 747 (867)
||-.++||||+.+|.+-=+|||...+
T Consensus 143 ~dlkp~Nill~~~~~~kl~dfg~~~~ 168 (297)
T cd05089 143 RDLAARNVLVGENLASKIADFGLSRG 168 (297)
T ss_pred CcCCcceEEECCCCeEEECCcCCCcc
Confidence 79999999999999998899998754
No 353
>TIGR02906 spore_CotS spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.
Probab=21.61 E-value=67 Score=35.00 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.6
Q ss_pred hhhccCCCCCcceeEecCCCEEEEeeccc
Q psy10441 717 YILGVGDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 717 YiLGIGDRH~dNIli~~tG~lfHIDFG~i 745 (867)
+.+-=||=|.+|||++. |.+.-|||+.+
T Consensus 187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~ 214 (313)
T TIGR02906 187 RGFCHQDYAYHNILLKD-NEVYVIDFDYC 214 (313)
T ss_pred CceEcCCCCcccEEEeC-CcEEEEECccc
Confidence 55678999999999998 78999999976
No 354
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=21.30 E-value=67 Score=33.31 Aligned_cols=83 Identities=17% Similarity=0.249 Sum_probs=43.1
Q ss_pred cccEEEEecCCcceeeeec--CccHHHHHhhcCcHHHHHHhhCCCCCCCCCCcHHHHHHHHHhhhhHHHHHhhhcc--CC
Q psy10441 648 TPYRVLATNTKHGFVQFVD--SFPVAEVLATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGV--GD 723 (867)
Q Consensus 648 ~~Y~Vip~~~~~GlIE~V~--s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~F~~S~A~ysv~tYiLGI--GD 723 (867)
...+++..+.++=++|+|+ ..++..+....- .+. +..+-|..-+....-+-.-.|| ||
T Consensus 71 ~vP~p~~~~~~~ivME~I~~~G~~~~~l~~~~~---------~~~---------~~~~~~~~il~~~~~~~~~~givHGD 132 (188)
T PF01163_consen 71 PVPKPYDYNRNVIVMEYIGEDGVPLPRLKDVDL---------SPE---------EPKELLEEILEEIIKMLHKAGIVHGD 132 (188)
T ss_dssp SS--EEEEETTEEEEE--EETTEEGGCHHHCGG---------GGS---------THHHHHHHHHHHHHHHHHCTTEEESS
T ss_pred cCCcEEEEeCCEEEEEecCCCccchhhHHhccc---------cch---------hHHHHHHHHHHHHHHHHHhcCceecC
Confidence 3456778888888899998 666554433210 000 0112222211111111123455 99
Q ss_pred CCCcceeEecCCCEEEEeeccccCCC
Q psy10441 724 RHFDNLLLTTSGKLFHIDFGYILGRD 749 (867)
Q Consensus 724 RH~dNIli~~tG~lfHIDFG~ilg~~ 749 (867)
=+..|||++++ +++=||||-.....
T Consensus 133 Ls~~NIlv~~~-~~~iIDf~qav~~~ 157 (188)
T PF01163_consen 133 LSEYNILVDDG-KVYIIDFGQAVDSS 157 (188)
T ss_dssp -STTSEEEETT-CEEE--GTTEEETT
T ss_pred CChhhEEeecc-eEEEEecCcceecC
Confidence 99999999985 99999999887554
No 355
>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta
Probab=21.29 E-value=2.3e+02 Score=30.14 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=22.1
Q ss_pred CCCCCcceeEecCCCEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
||=+++|||++.+|.+.=+|||..
T Consensus 143 ~dikp~nili~~~~~~~L~Dfg~~ 166 (288)
T cd05061 143 RDLAARNCMVAHDFTVKIGDFGMT 166 (288)
T ss_pred CCCChheEEEcCCCcEEECcCCcc
Confidence 788899999999999999999975
No 356
>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter
Probab=21.14 E-value=58 Score=34.58 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.8
Q ss_pred cCCCCCcceeEecCCCEEEEeecccc
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~il 746 (867)
-||-+++||+++++|++.-+|||..-
T Consensus 124 H~dl~p~Nil~~~~~~~~l~dfg~~~ 149 (277)
T cd06640 124 HRDIKAANVLLSEQGDVKLADFGVAG 149 (277)
T ss_pred CcCCChhhEEEcCCCCEEEcccccce
Confidence 38999999999999999999999873
No 357
>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=20.91 E-value=9.4e+02 Score=24.86 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=22.7
Q ss_pred cCCCCCcceeEecCCCEEEEeecccc
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~il 746 (867)
=+|=+++||+++..|.+.-+|||...
T Consensus 125 H~dl~p~ni~i~~~~~~~l~d~~~~~ 150 (260)
T cd05073 125 HRDLRAANILVSASLVCKIADFGLAR 150 (260)
T ss_pred ccccCcceEEEcCCCcEEECCCccee
Confidence 36777899999999999999999874
No 358
>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily.
Probab=20.91 E-value=8.3e+02 Score=24.23 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.6
Q ss_pred cCCCCCcceeEecCCCEEEEeeccccCC
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYILGR 748 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~ilg~ 748 (867)
-||=+++||+++.+|.+.=+|||.....
T Consensus 110 h~~i~~~ni~~~~~~~~~l~d~~~~~~~ 137 (244)
T smart00220 110 HRDLKPENILLDEDGHVKLADFGLARQL 137 (244)
T ss_pred cCCcCHHHeEECCCCcEEEccccceeee
Confidence 4888999999999999999999998643
No 359
>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH). The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio
Probab=20.85 E-value=75 Score=33.42 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=22.4
Q ss_pred hccCCCCCcceeEecCCCEEEEeeccc
Q psy10441 719 LGVGDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 719 LGIGDRH~dNIli~~tG~lfHIDFG~i 745 (867)
|==||=|++|||++.++.+-=|||+..
T Consensus 165 l~HgD~~~~Nil~~~~~~~~iIDwe~a 191 (244)
T cd05150 165 VTHGDACLPNIIVDPGKFSGFIDLGRL 191 (244)
T ss_pred EECCCCCCccEEEeCCcEEEEEEcccc
Confidence 444999999999998666668999877
No 360
>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays
Probab=20.78 E-value=2.3e+02 Score=29.66 Aligned_cols=26 Identities=23% Similarity=0.105 Sum_probs=23.9
Q ss_pred CCCCCcceeEecCCCEEEEeeccccC
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYILG 747 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~ilg 747 (867)
||=.++||+++++|.+.=+|||....
T Consensus 128 ~dlkp~nil~~~~~~~kl~df~~~~~ 153 (263)
T cd05052 128 RDLAARNCLVGENHLVKVADFGLSRL 153 (263)
T ss_pred cccCcceEEEcCCCcEEeCCCccccc
Confidence 89999999999999999999998754
No 361
>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast
Probab=20.73 E-value=8.9e+02 Score=24.53 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=24.6
Q ss_pred cCCCCCcceeEecCCCEEEEeeccccCC
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYILGR 748 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~ilg~ 748 (867)
-||=+++||+++.+|.+.=+|||.....
T Consensus 122 H~dl~p~ni~i~~~~~~~l~d~~~~~~~ 149 (254)
T cd06627 122 HRDIKAANILTTKDGVVKLADFGVATKL 149 (254)
T ss_pred cCCCCHHHEEECCCCCEEEeccccceec
Confidence 4899999999999999999999987643
No 362
>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do
Probab=20.58 E-value=9.4e+02 Score=24.74 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=22.9
Q ss_pred cCCCCCcceeEecCCCEEEEeecccc
Q psy10441 721 VGDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 721 IGDRH~dNIli~~tG~lfHIDFG~il 746 (867)
=||=+++||+++.+|.+.=+|||..-
T Consensus 120 H~dl~p~nil~~~~~~~~l~dfg~~~ 145 (260)
T cd05611 120 HRDIKPENLLIDQTGHLKLTDFGLSR 145 (260)
T ss_pred cCCCCHHHeEECCCCcEEEeecccce
Confidence 37888999999999999999999764
No 363
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=20.56 E-value=1.8e+02 Score=30.97 Aligned_cols=46 Identities=22% Similarity=0.149 Sum_probs=31.4
Q ss_pred HHHHHHHhhhhHHHHHhhhcc--CCCCCcceeEecCCCEEEEeecccc
Q psy10441 701 IMDTYVRSCAGYCVITYILGV--GDRHFDNLLLTTSGKLFHIDFGYIL 746 (867)
Q Consensus 701 a~~~F~~S~A~ysv~tYiLGI--GDRH~dNIli~~tG~lfHIDFG~il 746 (867)
....++.+++.-.-.-+=-|+ ||-+++||+++++|.+.=+|||..-
T Consensus 129 ~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~dfg~~~ 176 (291)
T cd06639 129 MISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSA 176 (291)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEeecccch
Confidence 344444444433323333444 7999999999999999999999764
No 364
>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported
Probab=20.53 E-value=70 Score=35.03 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=23.5
Q ss_pred hhccCCCCCcceeEecCCCEE-EEeecccc
Q psy10441 718 ILGVGDRHFDNLLLTTSGKLF-HIDFGYIL 746 (867)
Q Consensus 718 iLGIGDRH~dNIli~~tG~lf-HIDFG~il 746 (867)
+|==||=|++|||++++|++. =|||+..-
T Consensus 186 ~lvHGD~~~~Nilv~~~~~~~gviDWe~a~ 215 (276)
T cd05152 186 VLVHGDLHPGHILIDEDARVTGLIDWTEAK 215 (276)
T ss_pred eeEeCCCCCCcEEEeCCCCEEEEECcHhcc
Confidence 444599999999999778764 79999863
No 365
>TIGR02721 ycfN_thiK thiamine kinase. Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.
Probab=20.19 E-value=74 Score=33.89 Aligned_cols=32 Identities=34% Similarity=0.291 Sum_probs=25.8
Q ss_pred hhccCCCCCcceeEecCCCEEEEeeccccCCCC
Q psy10441 718 ILGVGDRHFDNLLLTTSGKLFHIDFGYILGRDP 750 (867)
Q Consensus 718 iLGIGDRH~dNIli~~tG~lfHIDFG~ilg~~~ 750 (867)
+|-=||=|++|||++++| +.=|||.+.--.+|
T Consensus 147 ~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~~gdp 178 (256)
T TIGR02721 147 APLHMDVHAYNLVVTPQG-LKLIDWEYASDGDI 178 (256)
T ss_pred eeecCCCCcCcEEEeCCC-CEEEeccccCcCCH
Confidence 455599999999999877 78999998854443
No 366
>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological
Probab=20.15 E-value=2.5e+02 Score=29.38 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=21.8
Q ss_pred CCCCCcceeEecCCCEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
+|--++|||++++|.+.=+|||..
T Consensus 143 ~di~p~nill~~~~~~kl~dfg~~ 166 (277)
T cd05032 143 RDLAARNCMVAEDLTVKIGDFGMT 166 (277)
T ss_pred cccChheEEEcCCCCEEECCcccc
Confidence 788899999999999998999975
No 367
>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit
Probab=20.05 E-value=2.6e+02 Score=29.87 Aligned_cols=24 Identities=25% Similarity=0.211 Sum_probs=22.1
Q ss_pred CCCCCcceeEecCCCEEEEeeccc
Q psy10441 722 GDRHFDNLLLTTSGKLFHIDFGYI 745 (867)
Q Consensus 722 GDRH~dNIli~~tG~lfHIDFG~i 745 (867)
||=.++||||+++|++.=+|||..
T Consensus 154 ~dlkp~Nili~~~~~~~l~dfg~~ 177 (296)
T cd05095 154 RDLATRNCLVGKNYTIKIADFGMS 177 (296)
T ss_pred ccCChheEEEcCCCCEEeccCccc
Confidence 788899999999999999999985
Done!