RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10441
(867 letters)
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta
protein, PIK3C3, compound 15E, structural genomics, SGC
stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Length = 614
Score = 597 bits (1540), Expect = 0.0
Identities = 403/616 (65%), Positives = 471/616 (76%), Gaps = 26/616 (4%)
Query: 267 ENKHHKLARSLRSGISDKDAKPNATVRDTLNTIISYPPSNQLTTEEQDLIWKFRFYLSNQ 326
+KHHKLARSLRSG SD D KPNA RD LN I+SYPP+ QLT EEQDL+WKFR+YL+NQ
Sbjct: 2 MSKHHKLARSLRSGPSDHDLKPNAATRDQLNIIVSYPPTKQLTYEEQDLVWKFRYYLTNQ 61
Query: 327 KKALTKFLECVNWELQAEARQALDLLDQWAPMDVEDSLQLLSPAFKHSAVRRYAVTRLQQ 386
+KALTKFL+CVNW+L EA+QAL+LL +W PMDVEDSL+LLS + + VRRYAV RL+Q
Sbjct: 62 EKALTKFLKCVNWDLPQEAKQALELLGKWKPMDVEDSLELLSSHYTNPTVRRYAVARLRQ 121
Query: 387 ASDEDLLLYLLQLVQALKYENFEDIMHGYKKLKVPPAIEASVLAEEMSSNVLE------- 439
A DEDLL+YLLQLVQALKYENF+DI +G + K S N E
Sbjct: 122 ADDEDLLMYLLQLVQALKYENFDDIKNGLEPTKKDSQSSVSENVSNSGINSAEIDSSQII 181
Query: 440 ----------------YNLDSSHAENMDLTSFLIHRASKSLTLANYFFWYLTIESEDQDF 483
+ DL +FLI RA K+ TLANY +WY+ +E EDQD
Sbjct: 182 TSPLPSVSSPPPASKTKEVPDGENLEQDLCTFLISRACKNSTLANYLYWYVIVECEDQDT 241
Query: 484 TIKQDIRVREMYANVKNIFLQTLQHGPSESHKINSYLIKQQSFIEKLVNLVKIVARESGN 543
++D + EMY NV F Q L G + S L QQ+F+++LV+L+K V RESGN
Sbjct: 242 Q-QRDPKTHEMYLNVMRRFSQALLKGDKSVRVMRSLLAAQQTFVDRLVHLMKAVQRESGN 300
Query: 544 RKRKIDRLQALLADSETFKFNFTNFEPLPLPLDPNVYIKGIIPEKATLFKSNLMPSRLTF 603
RK+K +RLQALL D+E K N ++ E +PLPL+P V I+GIIPE ATLFKS LMP++L F
Sbjct: 301 RKKKNERLQALLGDNE--KMNLSDVELIPLPLEPQVKIRGIIPETATLFKSALMPAQLFF 358
Query: 604 LTTTGTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQ 663
T G +Y IFKHGDDLRQDQLILQII+LMDKLLR ENLDLKLTPY+VLAT+TKHGF+Q
Sbjct: 359 KTEDGGKYPVIFKHGDDLRQDQLILQIISLMDKLLRKENLDLKLTPYKVLATSTKHGFMQ 418
Query: 664 FVDSFPVAEVLATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGD 723
F+ S PVAEVL TEGSIQNFFRK+ PS+NGP GIS+E+MDTYV+SCAGYCVITYILGVGD
Sbjct: 419 FIQSVPVAEVLDTEGSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYILGVGD 478
Query: 724 RHFDNLLLTTSGKLFHIDFGYILGRDPKPLPPPMKLSKEMVEAMGGINSEHYHEFRKQCY 783
RH DNLLLT +GKLFHIDFGYILGRDPKPLPPPMKL+KEMVE MGG SE Y EFRKQCY
Sbjct: 479 RHLDNLLLTKTGKLFHIDFGYILGRDPKPLPPPMKLNKEMVEGMGGTQSEQYQEFRKQCY 538
Query: 784 TAFLHLRRHSNLILNLFTLMVDASVPDIALEPDKAVKKVQDKFRLDLGDEEAVHYLQNLI 843
TAFLHLRR+SNLILNLF+LMVDA++PDIALEPDK VKKVQDKFRLDL DEEAVHY+Q+LI
Sbjct: 539 TAFLHLRRYSNLILNLFSLMVDANIPDIALEPDKTVKKVQDKFRLDLSDEEAVHYMQSLI 598
Query: 844 DLSVTAVMAALVEQLH 859
D SV A+ AA+VEQ+H
Sbjct: 599 DESVHALFAAVVEQIH 614
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta
isoform; transferase, phosphoinositide 3-kinase, RTK;
HET: GD9; 3.30A {Mus musculus}
Length = 1092
Score = 541 bits (1395), Expect = e-178
Identities = 204/860 (23%), Positives = 325/860 (37%), Gaps = 146/860 (16%)
Query: 35 DYEKMLSDPMLKYSGLYQEVCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITI 94
D ++K + L E + V +F L + SS S N WNE +
Sbjct: 350 DNNNPFQITLVKGNKLNTEETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEF 409
Query: 95 PLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFGKYGVFRQGMMDLKVWPNQVADP 154
+ DLPR A L +Y V
Sbjct: 410 DINICDLPRMARLCFAVYA--------------------------------VLDKVKTKK 437
Query: 155 KVPSSTPGKNTSSEKEQRETLAKLSKKFHNGHMVKIDWLDRLTFSKIENIKEKEKKASNY 214
+ P K + K + + W++ + F + K + +
Sbjct: 438 STKTINPSKYQTIRKAGKV-------------HYPVAWVNTMVF----DFKGQLRSGDVI 480
Query: 215 LYLMIEFPQIILDGNVHSVIYYERDGDEVYQFRAHADILTMPD--PEILQENLVENKHHK 272
L+ FP + + Y A A +T P+ + + K
Sbjct: 481 LHSWSSFPDELEEMLNPMGTVQTNP----YAENATALHITFPENKKQPCYYPPFDKIIEK 536
Query: 273 LARSLRSGISDKDAKPNATVRDTLNTIISYPPSNQLTTEEQDLIWKFRFYL-SNQKKALT 331
A ++ ++ L I+ P +QL E DLIW R N ++L
Sbjct: 537 AAELASGDSANVSSRGGKKFLAVLKEILDRDPLSQLCENEMDLIWTLRQDCRENFPQSLP 596
Query: 332 KFLECVNWELQAEARQALDLLDQWAPMDVEDSLQLLSPAFKHSAVRRYAVTRLQQASDED 391
K L + W + Q LL W + ++L+LL + VR YAV L+Q SDE+
Sbjct: 597 KLLLSIKWNKLEDVAQLQALLQIWPKLPPREALELLDFNYPDQYVREYAVGCLRQMSDEE 656
Query: 392 LLLYLLQLVQALKYENFEDIMHGYKKLKVPPAIEASVLAEEMSSNVLEYNLDSSHAENMD 451
L YLLQLVQ LKYE F D
Sbjct: 657 LSQYLLQLVQVLKYEPFLD---------------------------------------CA 677
Query: 452 LTSFLIHRASKSLTLANYFFWYLTIESEDQDFTIKQDIRVREMYANVKNIFLQTLQHGPS 511
L+ FL+ RA + + + FW+L E + + + +
Sbjct: 678 LSRFLLERALDNRRIGQFLFWHLRSEVHTPAV--------SVQFGVILEAYCRGSVGH-- 727
Query: 512 ESHKINSYLIKQQSFIEKLVNLVKIVARESGNRKR--KIDRLQALLADSETFKFNFTNFE 569
L KQ + KL L ++ + R + + L S +
Sbjct: 728 -----MKVLSKQVEALNKLKTLNSLIKLNAVKLSRAKGKEAMHTCLKQSAYREA----LS 778
Query: 570 PLPLPLDPNVYIKGIIPEKATLFKSNLMPSRLTFLT--TTGTEYVAIFKHGDDLRQDQLI 627
L PL+P V + + EK S + P L + + IFK+GDDLRQD L
Sbjct: 779 DLQSPLNPCVILSELYVEKCKYMDSKMKPLWLVYSSRAFGEDSVGVIFKNGDDLRQDMLT 838
Query: 628 LQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFV-DSFPVAEVLA----------- 675
LQ++ LMD L + LDL++ PY LAT + G ++ V S +A++
Sbjct: 839 LQMLRLMDLLWKEAGLDLRMLPYGCLATGDRSGLIEVVSTSETIADIQLNSSNVAATAAF 898
Query: 676 TEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSG 735
+ ++ N+ ++++ D+ I + + SCAGYCV +Y+LG+GDRH DN+++ +G
Sbjct: 899 NKDALLNWLKEYNSGDDLDRAI-----EEFTLSCAGYCVASYVLGIGDRHSDNIMVKKTG 953
Query: 736 KLFHIDFGYILGRDPKPL-----PPPMKLSKEMVEAM---GGINSEHYHEFRKQCYTAFL 787
+LFHIDFG+ILG P L+ + + + N+E + FR+ C A+L
Sbjct: 954 QLFHIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQCCEDAYL 1013
Query: 788 HLRRHSNLILNLFTLMVDASVPDIALEPDKAVKKVQDKFRLDLGDEEAVHYLQNLIDLSV 847
LRRH NL + LF LM+ A +P+ L K ++ ++D L +EEA+ + D ++
Sbjct: 1014 ILRRHGNLFITLFALMLTAGLPE--LTSVKDIQYLKDSLALGKSEEEALKQFKQKFDEAL 1071
Query: 848 TAVMAALV-EQLHKFAQYWR 866
V H + +R
Sbjct: 1072 RESWTTKVNWMAHTVRKDYR 1091
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta
isoform; transferase, phosphoprotein, isoform-specific
inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A*
2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A*
2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Length = 940
Score = 531 bits (1368), Expect = e-175
Identities = 198/854 (23%), Positives = 328/854 (38%), Gaps = 146/854 (17%)
Query: 34 PDYEKMLSDPMLKYSGLYQEVCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWIT 93
E+ S +++ + + LVV +F L +SSS + + W + +
Sbjct: 213 WSLEQPFSIELIEGRKVNADERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLE 272
Query: 94 IPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFGKYGVFRQGMMDLKVWPNQVAD 153
+ DLPR A L C +L+
Sbjct: 273 FDISVCDLPRMARL-------------------CFALYAVV------------------- 294
Query: 154 PKVPSSTPGKNTSSEKEQRETLAKLSKKFHNGHMVKIDWLDRLTFSKIENIKEKEKKASN 213
++ A+ +KK I W + + F + +K E+
Sbjct: 295 -----------------EKAKKARSTKKKSKKADCPIAWANLMLFDYKDQLKTGER---- 333
Query: 214 YLYLMIEFPQIILDGNVHSVIYYERDGDEVYQFRAHADILTMPDPEILQENLVENKHHKL 273
LY+ P + + A L + PE+ + K+
Sbjct: 334 CLYMWPSVPDEKGELLNPAGTVRGNP------NTESAAALVIYLPEVAPHPVYFPALEKI 387
Query: 274 ARSLRSGISDKDAKPNATVRDTLNTIISYPPSNQLTTEEQDLIWKFRFYLSNQ-KKALTK 332
R G + + + L I+ S +L E+DL+WK R + +AL +
Sbjct: 388 LELGRHGERGRITEEE---QLQLREILERRGSGELYEHEKDLVWKMRHEVQEHFPEALAR 444
Query: 333 FLECVNWELQAEARQALDLLDQWAPMDVEDSLQLLSPAFKHSAVRRYAVTRLQQASDEDL 392
L W + Q L LL W + V +L+LL +F V +A+ L++ +D++L
Sbjct: 445 LLLVTKWNKHEDVAQMLYLLCSWPELPVLSALELLDFSFPDCYVGSFAIKSLRKLTDDEL 504
Query: 393 LLYLLQLVQALKYENFEDIMHGYKKLKVPPAIEASVLAEEMSSNVLEYNLDSSHAENMDL 452
YLLQLVQ LKYE++ + +L
Sbjct: 505 FQYLLQLVQVLKYESYL---------------------------------------DCEL 525
Query: 453 TSFLIHRASKSLTLANYFFWYLTIESEDQDFTIKQDIRVREMYANVKNIFLQTLQHGPSE 512
T FL+ RA + + ++ FW+L E A + ++ G +
Sbjct: 526 TKFLLGRALANRKIGHFLFWHLRSEMHVPS------------VALRFGLIMEAYCRGSTH 573
Query: 513 SHKINSYLIKQQSFIEKLVNLVKIVARESGNRKRKIDRLQALLADSETFKFNFTNFEPLP 572
K+ L+KQ + KL L V S + + + + + L
Sbjct: 574 HMKV---LMKQGEALSKLKALNDFVKVSSQKTTKPQTKEMMHMCMRQ--ETYMEALSHLQ 628
Query: 573 LPLDPNVYIKGIIPEKATLFKSNLMPSRLTF---LTTTGTEYVAIFKHGDDLRQDQLILQ 629
PLDP+ ++ + E+ T S + P + + + IFK+GDDLRQD L LQ
Sbjct: 629 SPLDPSTLLEEVCVEQCTFMDSKMKPLWIMYSSEEAGSAGNVGIIFKNGDDLRQDMLTLQ 688
Query: 630 IITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFV-DSFPVAEVLAT------EGSIQN 682
+I LMD L + E LDL++TPY L T + G ++ V S +A + +
Sbjct: 689 MIQLMDVLWKQEGLDLRMTPYGCLPTGDRTGLIEVVLHSDTIANIQLNKSNMAATAAFNK 748
Query: 683 FFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHIDF 742
+ P ++ + SCAGYCV TY+LG+GDRH DN+++ SG+LFHIDF
Sbjct: 749 DALLNWLKSKNPGEALDRAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRESGQLFHIDF 808
Query: 743 GYILGRDPKPLPP-----PMKLSKEMVEAM---GGINSEHYHEFRKQCYTAFLHLRRHSN 794
G+ LG P L+ + V + NSE + FR C A+ LRRH
Sbjct: 809 GHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCERAYTILRRHGL 868
Query: 795 LILNLFTLMVDASVPDIALEPDKAVKKVQDKFRLDLGDEEAVHYLQNLIDLSVTAVMAAL 854
L L+LF LM A +P+++ D ++ ++D L +EEA+ + + + ++
Sbjct: 869 LFLHLFALMRAAGLPELSCSKD--IQYLKDSLALGKTEEEALKHFRVKFNEALRESWKTK 926
Query: 855 V-EQLHKFAQYWRK 867
V H ++ R+
Sbjct: 927 VNWLAHNVSKDNRQ 940
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit
alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol
3,4,5- triphosphate, wortmannin, H1047R, ATP-binding,
disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens}
PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Length = 1091
Score = 535 bits (1379), Expect = e-175
Identities = 191/893 (21%), Positives = 335/893 (37%), Gaps = 169/893 (18%)
Query: 2 ETPDDTFYYVYSCDVEAKIQIKIGTLEGVTLKPDYEKMLSDPMLKYSGLYQEVCADLVVF 61
+ + + ++IKI V + + V
Sbjct: 339 PYMNGETSTKSLWVINSALRIKILCATYVNVN------------------IRDIDKIYVR 380
Query: 62 CQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGAT--- 118
I+ G PL +++ +N WNEW+ + DLPR A L L+I G
Sbjct: 381 TGIYHGGEPLCDNVNTQRVPCSN-PRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKGAK 439
Query: 119 -QLIPIGGTCISLFGKYGVFRQGMMDLKVWPNQVADPKVPSSTPGKNTSSEKEQRETLAK 177
+ P+ I+LF G M L +WP P T
Sbjct: 440 EEHCPLAWGNINLFDYTDTLVSGKMALNLWPV--PHGLEDLLNPIGVTG----------- 486
Query: 178 LSKKFHNGHMVKIDWLDRLTFSKIENIKEKEKKASNYLYLMIEFPQIILDGNVHSVIYYE 237
N + E P + L+ + S +
Sbjct: 487 -----SNPNK--------------------------------ETPCLELEFDWFSSVVKF 509
Query: 238 RDGDEVYQFRAHADILTMPDPEILQENLVENKHHKLARSLRSGISDKDAKPNATVRDTLN 297
D + + + + +E H L+ L +D + ++ L
Sbjct: 510 PDMSVIEE---------HANWSVSREAGFSYSHAGLSNRL-----ARDNELRENDKEQLK 555
Query: 298 TIISYPPSNQLTTEEQDLIWKFRFYLSNQKKALTKFLECVNWELQAEARQALDLLDQWAP 357
I + P +++T +E+D +W R Y + L K L V W + E Q L+ W P
Sbjct: 556 AISTRDPLSEITEQEKDFLWSHRHYCVTIPEILPKLLLSVKWNSRDEVAQMYCLVKDWPP 615
Query: 358 MDVEDSLQLLSPAFKHSAVRRYAVTRL-QQASDEDLLLYLLQLVQALKYENFEDIMHGYK 416
+ E +++LL + VR +AV L + +D+ L YL+QLVQ LKYE + D
Sbjct: 616 IKPEQAMELLDCNYPDPMVRGFAVRCLEKYLTDDKLSQYLIQLVQVLKYEQYLD------ 669
Query: 417 KLKVPPAIEASVLAEEMSSNVLEYNLDSSHAENMDLTSFLIHRASKSLTLANYFFWYLTI 476
L FL+ +A + + ++FFW+L
Sbjct: 670 ---------------------------------NLLVRFLLKKALTNQRIGHFFFWHLKS 696
Query: 477 ESEDQDFTIKQDIRVREMYANVKNIFLQTLQHGPSESHKINSYLIKQQSFIEKLVNLVKI 536
E ++ + + + + + L +Q +EKL+NL I
Sbjct: 697 EMHNKTV--------SQRFGLLLESYCRACGMYLKH-------LNRQVEAMEKLINLTDI 741
Query: 537 VARESGNRKRKIDRLQALLADSETFKFNFTNFEPLPLPLDPNVYIKGIIPEKATLFKSNL 596
+ +E + +K+ + + + PL+P + + E+ + S
Sbjct: 742 LKQEKKDETQKVQMKFLVEQMRRPDFMDA--LQGFLSPLNPAHQLGNLRLEECRIMSSAK 799
Query: 597 MPSRLTFLT------TTGTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPY 650
P L + IFK+GDDLRQD L LQII +M+ + +++ LDL++ PY
Sbjct: 800 RPLWLNWENPDIMSELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENIWQNQGLDLRMLPY 859
Query: 651 RVLATNTKHGFVQFV-DSFPVAEVLATEG-----SIQNFFRKHHPSDNGPYGISSEIMDT 704
L+ G ++ V +S + ++ G + D I +D
Sbjct: 860 GCLSIGDCVGLIEVVRNSHTIMQIQCKGGLKGALQFNSHTLHQWLKDKNKGEIYDAAIDL 919
Query: 705 YVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHIDFGYILGRDPKPL-----PPPMKL 759
+ RSCAGYCV T+ILG+GDRH N+++ G+LFHIDFG+ L K P L
Sbjct: 920 FTRSCAGYCVATFILGIGDRHNSNIMVKDDGQLFHIDFGHFLDHKKKKFGYKRERVPFVL 979
Query: 760 SKEMVEAMGG-----INSEHYHEFRKQCYTAFLHLRRHSNLILNLFTLMVDASVPDIALE 814
+++ + + + + F++ CY A+L +R+H+NL +NLF++M+ + +P++
Sbjct: 980 TQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSF 1039
Query: 815 PDKAVKKVQDKFRLDLGDEEAVHYLQNLIDLSVTAVMAA-LVEQLHKFAQYWR 866
D + ++ LD ++EA+ Y ++ + + H Q+
Sbjct: 1040 DD--IAYIRKTLALDKTEQEALEYFMKQMNDARHGGWTTKMDWIFHTIKQHAL 1090
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide
3-kinase gamma, secondary messenger generation, PI3K, PI
3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP:
a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A*
1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A*
3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A*
3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Length = 961
Score = 517 bits (1333), Expect = e-170
Identities = 190/848 (22%), Positives = 322/848 (37%), Gaps = 144/848 (16%)
Query: 45 LKYSGLYQEVCADLVVFCQIFSDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRN 104
+ L + + V I L +S K FT WN W+ + DLP+
Sbjct: 227 IDIPVLPRTADLTVFVEANIQYGQQVLCQR-RTSPKPFTEEVLWNVWLEFSIKIKDLPKG 285
Query: 105 AILALTIYDCGGATQLIPIGGTCISLFGKYGVFRQGMMDLKVWPNQVADPKVPSSTPGKN 164
A+L L IY
Sbjct: 286 ALLNLQIYC--------------------------------------------------- 294
Query: 165 TSSEKEQRETLAKLSKKFHNGHMVKIDWLDRLTFSKIENIKEKEKKASNYLYLMIEFPQI 224
+ +T A++ G + +++ L + + L++ +
Sbjct: 295 GAKPALSGKTSAEMPSPESKGKAQLLYYVNLLLIDH----RFLLRHGEYVLHMWQLSGKG 350
Query: 225 ILDGNVHSVIYYERDGDEVYQFRAHADILTMPDPEILQENLVENKHHKLARSL-RSGISD 283
G+ ++ + + D IL +N R
Sbjct: 351 EDQGSFNA---------DKLTSATNPDKENSMSISILLDNYCHPIALPKHRPTPDPEGDR 401
Query: 284 KDAKPNATVRDTLNTIISYPPSNQLTTEEQDLIWKFRFYLSNQKKALTKFLECVNWELQA 343
A+ +R L II+ P N LT E+++L+W FR+ KA K V W Q
Sbjct: 402 VRAEMPNQLRKQLEAIIATDPLNPLTAEDKELLWHFRYESLKDPKAYPKLFSSVKWGQQE 461
Query: 344 EARQALDLLDQW-----APMDVEDSLQLLSPAFKHSAVRRYAVTRLQQASDEDLLLYLLQ 398
+ LL + + +DV ++QLL F VR AV +L+ D+D+L YLLQ
Sbjct: 462 IVAKTYQLLAKREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHYLLQ 521
Query: 399 LVQALKYENFEDIMHGYKKLKVPPAIEASVLAEEMSSNVLEYNLDSSHAENMDLTSFLIH 458
LVQA+K+E + D L FL+
Sbjct: 522 LVQAVKFEPYHD---------------------------------------SALARFLLK 542
Query: 459 RASKSLTLANYFFWYLTIESEDQDFTIKQDIRVREMYANVKNIFLQTLQHGPSESHKINS 518
R ++ + ++ FW+L E ++ + E Y G +
Sbjct: 543 RGLRNKRIGHFLFWFLRSEIAQSRHYQQRFAVILEAY-----------LRGCGTAML--H 589
Query: 519 YLIKQQSFIEKLVNLVKIVARESGNRKRKIDRLQALLADSETFKFNFTNFEPLPLPLDPN 578
+Q I+ L + + S + ++ + L N + +P DP
Sbjct: 590 DFTQQVQVIDMLQKVTIDIKSLSAEKYDVSSQVISQLKQKLENLQNLNLPQSFRVPYDPG 649
Query: 579 VYIKGIIPEKATLFKSNLMPSRLTFLTT-----TGTEYVAIFKHGDDLRQDQLILQIITL 633
+ ++ EK + S P L F + IFKHGDDLRQD LILQI+ +
Sbjct: 650 LKAGALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRI 709
Query: 634 MDKLLRSENLDLKLTPYRVLATNTKHGFVQFV-DSFPVAEVL----ATEGSIQNFFRKHH 688
M+ + +E+LDL L PY ++T K G ++ V D+ +A++ G+ ++ H
Sbjct: 710 MESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTGAFKDEVLSHW 769
Query: 689 PSDNGPYGIS-SEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHIDFGYILG 747
+ P ++ +V SCAGYCV T++LG+GDRH DN++++ +G LFHIDFG+ILG
Sbjct: 770 LKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMISETGNLFHIDFGHILG 829
Query: 748 RDPKPL-----PPPMKLSKEMVEAMGGI---NSEHYHEFRKQCYTAFLHLRRHSNLILNL 799
L P L+ + + MG S H+ +F+ C A+L LR H+NL++ L
Sbjct: 830 NYKSFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIIL 889
Query: 800 FTLMVDASVPDIALEPDKAVKKVQDKFRLDLGDEEAVHYLQNLIDLSVTAVMAALVEQLH 859
F++M+ +P + + D ++ ++D + +E+A Y + I++
Sbjct: 890 FSMMLMTGMPQLTSKED--IEYIRDALTVGKSEEDAKKYFLDQIEVCRDKGWTVQFNWFL 947
Query: 860 KFAQYWRK 867
++
Sbjct: 948 HLVLGIKQ 955
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase;
2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A*
2x6j_A* 2x6k_A*
Length = 696
Score = 468 bits (1205), Expect = e-154
Identities = 305/618 (49%), Positives = 390/618 (63%), Gaps = 48/618 (7%)
Query: 256 PDPEILQ---ENLVENKHHKLARSLRSGISDKDAKPNATVRDTLNTIISYPPSNQLTTEE 312
P++ + L + L L + + + I + ++
Sbjct: 121 THPQVRKYAVSRLAQAPDEDLLLYLLQLVQALKYEDPRHIVHLHGCIFPERDVVRSILDD 180
Query: 313 QDLIWKFRFYLSNQKKALTKFLECVNWELQAEARQALDLLDQWAPMDVEDSLQLLSPAFK 372
+ + A L + + + S
Sbjct: 181 NGSLLDQSSLSDLSATSSGLHAS--VIPANQRAASVLAAIKSDKSVSPGSAGGSGSGGQG 238
Query: 373 HSAVRRYAVTRLQQAS--DEDLLLYLLQLVQALKYENFEDIMHGYKKLKVPPAIEASVLA 430
A+ + +S D L L + + + +
Sbjct: 239 SVALPNPSAPATPGSSSLPCDSNSNALMLAEGISFGSVPA-------------------- 278
Query: 431 EEMSSNVLEYNLDSSHAENMDLTSFLIHRASKSLTLANYFFWYLTIESEDQDFTIKQDIR 490
+L +FLI RA + TLANYF+WYL+IE E+ + KQD R
Sbjct: 279 --------------------NLCTFLIQRACTNATLANYFYWYLSIEVEEVESVRKQDER 318
Query: 491 VREMYANVKNIFLQTLQHGPSESHKINSYLIKQQSFIEKLVNLVKIVARESGNRKRKIDR 550
+MYA V +FL+ L++G I L KQ+ FI++LV LVK+VA+E GNR +K ++
Sbjct: 319 AHDMYAMVLKMFLKVLENGNFNLRGIFYNLRKQRRFIDELVKLVKLVAKEPGNRNKKTEK 378
Query: 551 LQALLADSETFKFNFTNFEPLPLPLDPNVYIKGIIPEKATLFKSNLMPSRLTFLTTTGT- 609
Q LLA+ + FK NFTNFEP+P PLDP +YI I+P + +LFKS LMP++LTF+T+
Sbjct: 379 FQKLLAEQDMFKVNFTNFEPIPFPLDPEIYITKIVPMRTSLFKSALMPAKLTFVTSIAHH 438
Query: 610 EYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVDSFP 669
EY AIFKHGDDLRQDQLILQ+ITLMDKLLR ENLDLKLTPY+VLAT++KHGF+Q+VDS
Sbjct: 439 EYAAIFKHGDDLRQDQLILQMITLMDKLLRRENLDLKLTPYKVLATSSKHGFLQYVDSCT 498
Query: 670 VAEVLATEGSIQNFFRKHHPSDNGPYGISSEIMDTYVRSCAGYCVITYILGVGDRHFDNL 729
VAEVLA EG+I NFFRKHHP DNGPYGIS+E+MDTY++SCAGYCVITY+LGVGDRH DNL
Sbjct: 499 VAEVLAREGNIHNFFRKHHPCDNGPYGISAEVMDTYIKSCAGYCVITYLLGVGDRHLDNL 558
Query: 730 LLTTSGKLFHIDFGYILGRDPKPLPPPMKLSKEMVEAMGGINSEHYHEFRKQCYTAFLHL 789
LLTT+GKLFHIDFGYILGRDPKP+PPPMKLSKEMVEAMGGI+SEH+HEFRKQCYTA+LHL
Sbjct: 559 LLTTNGKLFHIDFGYILGRDPKPMPPPMKLSKEMVEAMGGISSEHHHEFRKQCYTAYLHL 618
Query: 790 RRHSNLILNLFTLMVDASVPDIALEPDKAVKKVQDKFRLDLGDEEAVHYLQNLIDLSVTA 849
RRH+N++LNLF+LMVDA+VPDIALEPDKAVKKV++ +L L DEEAV +LQ+L+D+S+TA
Sbjct: 619 RRHANVMLNLFSLMVDATVPDIALEPDKAVKKVEENLQLGLTDEEAVQHLQSLLDVSITA 678
Query: 850 VMAALVEQLHKFAQYWRK 867
VM ALVEQ+H+F QYWRK
Sbjct: 679 VMPALVEQIHRFTQYWRK 696
Score = 205 bits (522), Expect = 3e-56
Identities = 117/218 (53%), Positives = 147/218 (67%), Gaps = 1/218 (0%)
Query: 257 DPEILQENLVENKHHKLARSLRSGISDKDAKPNATVRDTLNTIIS-YPPSNQLTTEEQDL 315
D EI ENLVE KHH+LARS RSGISD+DAKP A++RD L+TI+ YPP+ L++EEQDL
Sbjct: 5 DSEIQMENLVERKHHRLARSERSGISDRDAKPTASIRDQLHTIVYRYPPTYVLSSEEQDL 64
Query: 316 IWKFRFYLSNQKKALTKFLECVNWELQAEARQALDLLDQWAPMDVEDSLQLLSPAFKHSA 375
+WKFRFYLS+ KKALTKFL+C+NW+L+ E QAL +L WAPMDVED+L+LLSP F H
Sbjct: 65 VWKFRFYLSSHKKALTKFLKCINWKLEDEVTQALWMLANWAPMDVEDALELLSPTFTHPQ 124
Query: 376 VRRYAVTRLQQASDEDLLLYLLQLVQALKYENFEDIMHGYKKLKVPPAIEASVLAEEMSS 435
VR+YAV+RL QA DEDLLLYLLQLVQALKYE+ I+H + + + S+L + S
Sbjct: 125 VRKYAVSRLAQAPDEDLLLYLLQLVQALKYEDPRHIVHLHGCIFPERDVVRSILDDNGSL 184
Query: 436 NVLEYNLDSSHAENMDLTSFLIHRASKSLTLANYFFWY 473
D S + S + + LA
Sbjct: 185 LDQSSLSDLSATSSGLHASVIPANQRAASVLAAIKSDK 222
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 86.4 bits (213), Expect = 2e-17
Identities = 104/606 (17%), Positives = 192/606 (31%), Gaps = 193/606 (31%)
Query: 32 LKPDYEKMLS-------DPMLKYSGLYQEVCADLVVFCQIFSDGVPLSLPISSSYKSFTN 84
L+ +Y+ ++S P + +Y E D ++++D + K +
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTR-MYIE-QRD-----RLYNDNQVFA-------KYNVS 132
Query: 85 RWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCISLFGKYGVFRQGMMDL 144
R + L R A+L +L P + + G G G
Sbjct: 133 R---------LQPYLKL-RQALL-----------ELRPAKN--VLIDGVLGS---G---- 162
Query: 145 KVW-PNQVA-DPKVPSSTPGK-------NTSSEKEQRETLAKLSKKFHNGHMVKIDWLDR 195
K W V KV K N +S + E L KL + + D
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 196 LTFSKIENIKEKEKKASNYLYLMIEFPQ--IILDGNVHSVIYYERDGDEVYQFRAHADIL 253
+ +I +I+ + ++ L + ++L NV ++ F IL
Sbjct: 223 IKL-RIHSIQAELRR----LLKSKPYENCLLVLL-NV-------QNAKAWNAFNLSCKIL 269
Query: 254 -TMPDPEILQENLVENKHHKLARSLRSGISDKDAKPNATVRDTLNTIISYPPSNQLTTEE 312
T ++ L+ + + IS T + + ++ Y L
Sbjct: 270 LTTRFKQVTD---------FLSAATTTHISLDHHSMTLTPDEVKSLLLKY-----LDCRP 315
Query: 313 QDL--------------IWK--------FRFYLSNQKKALTKFLE-CVNWELQAEAR--- 346
QDL I + + + LT +E +N AE R
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 347 --------------QALDLLDQWAPMDVEDSLQLLSPAFKHSAVRRYAVTRLQQASDEDL 392
L L+ W + D + +++ K+S V + Q + +
Sbjct: 376 DRLSVFPPSAHIPTILLSLI--WFDVIKSDVMVVVNKLHKYSLVEK-------QPKESTI 426
Query: 393 LLYLLQLVQALKYENFEDIMHGYKKLKVPPAIEASVLAEEMSSNVLEYNLDSSHAENMDL 452
+ + L +K EN E +H + + ++ YN+ + ++ DL
Sbjct: 427 SIPSIYLELKVKLEN-EYALH--RSI-----VDH-------------YNIPKTF-DSDDL 464
Query: 453 TSFLIHRASKSLTLANYFFWYL-----TIESEDQ---------DFT-IKQDIRVREMYAN 497
L YF+ ++ IE ++ DF ++Q IR N
Sbjct: 465 IP---------PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 498 VKNIFLQTLQHGPSESHKINSYLIKQQSFIEKLVN-LVKIVARESGN--RKRKIDRLQ-A 553
L TLQ + Y+ E+LVN ++ + + N + D L+ A
Sbjct: 516 ASGSILNTLQ----QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 554 LLADSE 559
L+A+ E
Sbjct: 572 LMAEDE 577
Score = 69.9 bits (170), Expect = 3e-12
Identities = 115/694 (16%), Positives = 210/694 (30%), Gaps = 241/694 (34%)
Query: 240 GDEVYQFRAHADILTMPDPEILQENLVENKHHK-LARSLRSGISDKDAKPNATVRDTLNT 298
G+ YQ++ DIL + ++ V+N K + +S +S ++ ++
Sbjct: 12 GEHQYQYK---DIL-----SVFEDAFVDNFDCKDVQDMPKSILSKEE----------IDH 53
Query: 299 IISYPPSNQLTTEEQDLIWKFRFYLSNQKKALTKFLECV-----NW---ELQAEARQALD 350
II + T L W LS Q++ + KF+E V + ++ E RQ
Sbjct: 54 IIMSKDAVSGTLR---LFWTL---LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 351 LLDQWAPMDVEDSLQLLSPAF-KHSAVRRYAVTRLQQASDEDLLLYLLQLVQALKYENFE 409
+ + ++ D L + F K++ R +L+QA LL+L A +
Sbjct: 108 MTRMY--IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA--------LLELRPA------K 151
Query: 410 DI----MHGYKKLKVPPAIEASVLAEEMSSNVLEYNLDSSHAENMDLTSFLIHRASKSLT 465
++ + G K + +A + V L MD F I
Sbjct: 152 NVLIDGVLGSGK---------TWVALD----VC---LSYKVQCKMD---FKI-------- 184
Query: 466 LANYFFWYLTIESEDQDFTIKQDIRVREMYANVKNIFLQTLQHGPSESHKINSYLIKQQS 525
FW +K + ++ + Q + S S ++ ++ S
Sbjct: 185 -----FW----------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 526 FIEKLVNLVKIVARESGNRKRKIDRLQALLADSETFKFNFTNFEPLPLPLDPNVYIKGII 585
+L L+K ++ + LL L NV
Sbjct: 230 IQAELRRLLK-------SKPYE----NCLLV------------------LL-NVQNAKAW 259
Query: 586 PEKATLFKSN-LMPSR----LTFLTTTGTEYVAIFKHGDDLRQDQLILQIITLMDKLLRS 640
A L+ +R FL+ T ++++ H L D++ +L+ K L
Sbjct: 260 --NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK----SLLLKYLDC 313
Query: 641 ENLDLKLTPYRVLATNTKHGFVQFVDSFP-----VAEVLATEGSIQNFFRKHHPSDNGPY 695
DL P VL TN P +AE + + + ++
Sbjct: 314 RPQDL---PREVLTTN------------PRRLSIIAESIRDGLATWDNWKH--------- 349
Query: 696 GISSEIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHIDFGYILGRDPKPLPP 755
++ + + T + S + L K+F + P
Sbjct: 350 -VNCDKLTTIIESS----------------LNVLEPAEYRKMFD-RLS-VF---PPSAHI 387
Query: 756 PMKL--------SKEMVEAMGGINS--------EHYHEFRKQCYTAFLHLRRHSNLILNL 799
P L K V + +N + E + +L L+ L
Sbjct: 388 PTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 800 FTLMVDASVPDIALEPDKAVKKVQDK---------------------FR---LDLGDEEA 835
+VD + D + D+ FR LD
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF----- 500
Query: 836 VHYLQNLIDLSVTAVMAA-----LVEQLHKFAQY 864
+L+ I TA A+ ++QL + Y
Sbjct: 501 -RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Score = 52.5 bits (125), Expect = 6e-07
Identities = 56/368 (15%), Positives = 109/368 (29%), Gaps = 87/368 (23%)
Query: 549 DRLQALLADSETFK--FNFTNFEPLPLPLDPNVYIKGIIPEKATLFKSNLMPSRLTFLTT 606
D L + F F+ + + +P + I II K + + + L +
Sbjct: 20 DILSVFE---DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL---FWTLLS 73
Query: 607 TGTEYVAIFKHGDDLRQDQLILQIITLMDKLLRSENLD--LKLTPYRVLATNTKHGFVQF 664
E V F + LR + L M + ++E + Y + + + Q
Sbjct: 74 KQEEMVQKFV-EEVLRINYKFL-----MSPI-KTEQRQPSMMTRMY-IEQRDRLYNDNQV 125
Query: 665 VDSFPVA---EVLATEGSIQNFFRKHHPSDN----GPYGI-----SSEIMDTYVRSCAGY 712
+ V+ L ++ + P+ N G G + ++ +Y C
Sbjct: 126 FAKYNVSRLQPYLK----LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 713 CVITYILGVGDRHFDNLLLTTSGKLFH-IDFGYILGRDPKPLPPPMKLSKEMVEAMGGIN 771
I ++ + + + +L KL + ID + D +KL ++
Sbjct: 182 FKIFWL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH---SSNIKLRIHSIQ------ 231
Query: 772 SEHYHEFRKQCYTAFLHLRRHSN--LIL---------NLF-----TLMV--DASVPDIAL 813
E R+ L + + N L+L N F L+ V D L
Sbjct: 232 ----AELRR-----LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD-FL 281
Query: 814 EPDKAVKKVQDKFRLDLGDEEAVHYLQNLIDLSVT--------------AVMAALVEQLH 859
D + L +E L +D +++A +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 860 KFAQYWRK 867
W+
Sbjct: 342 ATWDNWKH 349
Score = 37.9 bits (87), Expect = 0.017
Identities = 44/311 (14%), Positives = 94/311 (30%), Gaps = 113/311 (36%)
Query: 8 FYYVYSCD-VEAKIQIKIGTLEGVTLKPDYEKMLSDPMLKYSGLYQEVCADLVVFCQIFS 66
+ +CD + I+ + LE + ++ L +F
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-------------------RLS----VFP 382
Query: 67 DGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILA-------LTIYDCGGATQ 119
+ + S W + ++ + L + +++ ++I
Sbjct: 383 PSAHIPTILLSLI------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI----- 431
Query: 120 LIPIGGTCISLFGKYGVFRQGMMDLKVWPNQVADPKVPSSTPGKNTSSEKEQRETLA--- 176
++LK +E ++
Sbjct: 432 ---------------------YLELK-----------------VKLENEYALHRSIVDHY 453
Query: 177 KLSKKFHNGHMVKIDWLDRLTFSKI----ENIKEKEKKAS-NYLYLMIEFPQ--IILDGN 229
+ K F + ++ +LD+ +S I +NI+ E+ ++L F + I D
Sbjct: 454 NIPKTFDSDDLIP-PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 230 -----------VHSVIYYER---DGDEVYQFRAHADILT-MPDPEILQENLVENKHHKLA 274
+ + +Y+ D D Y+ R IL +P E ENL+ +K+ L
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAILDFLPKIE---ENLICSKYTDL- 567
Query: 275 RSLRSGISDKD 285
LR + +D
Sbjct: 568 --LRIALMAED 576
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.8 bits (160), Expect = 6e-11
Identities = 94/574 (16%), Positives = 169/574 (29%), Gaps = 230/574 (40%)
Query: 160 TPGKNTSSEKEQRETLAKLSKKFHNGHMVKIDWLDRLTF--SKIENIKEKEKKASNYLYL 217
P + +++ E T A+L KF L + S +E K + L L
Sbjct: 43 EPTEGFAADDEP-TTPAELVGKF-------------LGYVSSLVE--PSKVGQFDQVLNL 86
Query: 218 MI-EFPQIILDG-NVHSVIYYERDGDEVYQFRAHADILTMPDPEILQ-----ENLVENKH 270
+ EF L+G ++H++ + D + E+++ + +
Sbjct: 87 CLTEFENCYLEGNDIHAL---------AAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 271 HKLARS-LRSGISDKDAKP--------NATV-----RDTLNTIISYPPSNQLTTEEQDLI 316
K + S L + + +A+ N RD T Y DLI
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT---YHVL------VGDLI 188
Query: 317 WKFRFYLSNQKKALTKFLECVNWELQAEA--RQALDLLDQWAPMDVEDSLQLLSPAFKHS 374
K + E + L AE Q L++L +W L +P+
Sbjct: 189 ----------KFSAETLSELIRTTLDAEKVFTQGLNIL-EW----------LENPS---- 223
Query: 375 AVRRYAVTRLQQASDEDLLLY------LLQLVQALKYENFEDIMHGYKKLKVPPA----- 423
D+D LL L+ ++Q Y K L P
Sbjct: 224 -----------NTPDKDYLLSIPISCPLIGVIQLAHYVVT------AKLLGFTPGELRSY 266
Query: 424 -----------IEASVLAEEMSSNVLEYNLDSSHAENMDLTSFLIHRASKSLTLANYFFW 472
+ A +AE S SF + K++T+ F+
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWE-----------------SFFVS-VRKAITVL---FF 305
Query: 473 YLTIESEDQDFT---------IKQDIRVRE-----MYANVKNIFLQTLQ--------HGP 510
I + ++ + E M + + N+ + +Q H P
Sbjct: 306 ---IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS-ISNLTQEQVQDYVNKTNSHLP 361
Query: 511 SESHK----INSYLIKQQSFI-----EKLVNLVKIVAR---ESGNRKRKI---DRLQALL 555
+ +N ++ + + L L + + SG + +I +R
Sbjct: 362 AGKQVEISLVNGA----KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER----- 412
Query: 556 ADSETFKFNFTN-FEPLPLP-----LDPNV-YIKGIIPEKATLFKSNLMPSRLT---FLT 605
K F+N F P+ P L P I + + F + + T
Sbjct: 413 ------KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN----AKDIQIPVYDT 462
Query: 606 TTGTEYVAIFKHGDDLRQ------DQLILQIITL 633
G+ DLR ++++ II L
Sbjct: 463 FDGS----------DLRVLSGSISERIVDCIIRL 486
Score = 56.2 bits (135), Expect = 5e-08
Identities = 71/455 (15%), Positives = 123/455 (27%), Gaps = 178/455 (39%)
Query: 2 ETPDDTFYYVYSCDVEAKIQIKIGTLEGVTLKPDYEKMLSDPM-LKYSGLYQEVCADLVV 60
T D + ++ LE + PD + +LS P+ G+ Q A VV
Sbjct: 201 TTLDAEKVFTQGLNILE-------WLENPSNTPDKDYLLSIPISCPLIGVIQ--LAHYVV 251
Query: 61 FCQIF-----------------SDGVPLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPR 103
++ S G+ ++ I+ + W +
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD-------SWESFF----------V 294
Query: 104 NAILALTIYDCGGATQLIPIGGTCISLFGKYGVFRQGMMDLKVWPNQVADPKVPSSTPGK 163
+ A+T+ L IG C Y + + P+ + D S +
Sbjct: 295 SVRKAITV--------LFFIGVRC------YEAYPN----TSLPPSILED----SLENNE 332
Query: 164 NTSS-------------EKEQRETLAKLSKKFH------NG--HMV-------------- 188
S + +T + L NG ++V
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 189 --KI---DWLD--RLTFSKIENIKEKEKKASNYLYLMIEFPQIILDGNVHSVIYYERDGD 241
K LD R+ FS+ K + +L + P
Sbjct: 393 LRKAKAPSGLDQSRIPFSE-------RKLKFSNRFLPVASP------------------- 426
Query: 242 EVYQFRAHADILTMPDPEILQENLVENKHHKLARSLRSGISDKDAKPNATVRDTLNTIIS 301
F H+ +L P +++ ++LV+N A+ ++ V DT +
Sbjct: 427 ----F--HSHLLV-PASDLINKDLVKNNVSFNAKDIQ-----------IPVYDTFD---- 464
Query: 302 YPPSNQLTTEEQDLIWKFRFYLSNQKKALTK--FLECVNWE--LQAEARQALDLLDQWAP 357
DL R + + + V WE Q +A LD P
Sbjct: 465 ----------GSDL----RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF----GP 506
Query: 358 MDVEDSLQLLSPAFKHSAVRRYAVTRLQQASDEDL 392
L + VR L D+D
Sbjct: 507 GGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 56.2 bits (135), Expect = 5e-08
Identities = 87/561 (15%), Positives = 165/561 (29%), Gaps = 175/561 (31%)
Query: 403 LKYENFEDIMHGYKKLKVPPA--IEASVLAEEMSSNVLEYNLDSSHAENMDLTSFLIHRA 460
L + + E H L VP A AS L E+ + L + A++ + T+
Sbjct: 11 LSHGSLE---HV---LLVPTASFFIASQLQEQFNKI-LPEPTEGFAADD-EPTT------ 56
Query: 461 SKSLTLANYFFWYLTIESEDQDFTIKQDIRVREMYANVKNIFLQTLQHGPSESHKI-NSY 519
L F Y++ E + + +N +L+ ++ H +
Sbjct: 57 --PAELVGKFLGYVSSLVEPSKVGQFDQV-LNLCLTEFENCYLEG-----NDIHALAAKL 108
Query: 520 LIKQQSFIEKLVNLVK--IVARESGNRKRKIDRLQALL--ADSETFKFNFTNF----EPL 571
L + + + K L+K I AR R AL + F
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL-VAIFGGQG--- 164
Query: 572 PLPLDPNVYIKGIIPEKATLFKS---------NLMPSRLTFLTTTGTEYVAIFKHGDDLR 622
+ + Y + E L+++ L+ L T + +F G ++
Sbjct: 165 ----NTDDYFE----ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 623 Q---------DQLILQ-------IITLMDKLLRSENLDLKLTPYRVLATNTKHGFVQFVD 666
+ D+ L +I + ++L Y V A +
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGV-----------IQLAHYVVTAKLLGFTPGELRS 265
Query: 667 SF----------PVAEVLATEGSIQNFF---------------RKH--HPSDNGPYGISS 699
A +A S ++FF R + +P +
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP----NTSLPP 321
Query: 700 EIMDTYVRSCAGYCVITYILGVGDRHFDNLLLTTSGKLFHIDFGYILGRDPKPLPPPMKL 759
I++ + + G V + +L + + LT +++ + LP ++
Sbjct: 322 SILEDSLENNEG--VPSPMLSISN-------LTQEQVQDYVN------KTNSHLPAGKQV 366
Query: 760 S-------KEMV-----EAMGGINSEHYHEFRKQCYTAFLHLRR--HSN---LILNLFTL 802
K +V +++ G+N RK + L R S N F L
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNL----TLRKAKAPSGLDQSRIPFSERKLKFSNRF-L 421
Query: 803 MVDASVP---DIALEPDKAVKKVQDKFRLDLGDEE---AVHYLQ----------NLIDLS 846
V + P + L P D DL +Q +L LS
Sbjct: 422 PV--ASPFHSHL-LVP------ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 847 VTAVMAALVEQLHKFAQYWRK 867
++ +V+ + + W
Sbjct: 473 -GSISERIVDCIIRLPVKWET 492
Score = 43.9 bits (103), Expect = 3e-04
Identities = 86/446 (19%), Positives = 130/446 (29%), Gaps = 181/446 (40%)
Query: 17 EAKI------QIKIGTLEGVTLKPDYEKMLSDPMLKYSGLYQEVCADLVVFC-QIFSDGV 69
A++ Q G + DY + L D L Y Y + DL+ F + S
Sbjct: 153 NAQLVAIFGGQ---GNTD------DYFEELRD--L-YQ-TYHVLVGDLIKFSAETLS--- 196
Query: 70 PLSLPISSSYKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQLIPIGGTCIS 129
L + K FT + EW+ P S+ P L IPI I
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENP---SNTPDKDYLL-----------SIPISCPLIG 242
Query: 130 L--FGKYGVFRQGMMDLKVWPNQVADPKVPSSTPGKNTSSEKEQRETLAKLSKKFHNGHM 187
+ Y V K+ TPG E R L + GH
Sbjct: 243 VIQLAHYVVTA----------------KLLGFTPG-------ELRSYLKGAT-----GHS 274
Query: 188 VKI----------DWLDRLTFSKIENIKEKEKKASNYLYLM-----IEFPQIILDGNVHS 232
+ W E+ +KA L+ + +P L S
Sbjct: 275 QGLVTAVAIAETDSW---------ESFFVSVRKAITVLFFIGVRCYEAYPNTSLP---PS 322
Query: 233 VIYYERDGDEVYQFRAHADILTMPDP---------EILQENLVE-NKHHKLARSLRSGIS 282
++ + +E +P P E +Q+ + + N H L + IS
Sbjct: 323 ILEDSLENNE-----------GVPSPMLSISNLTQEQVQDYVNKTNSH--LPAGKQVEIS 369
Query: 283 DKDAKPNATVRDTLNTIISYPPSNQLTTEEQDLIWKFRFYLSNQKKALTKFLECVNWELQ 342
N N ++S PP Q L L L + +
Sbjct: 370 LV----NG--AK--NLVVSGPP--------QSL------------YGLNLTLR----KAK 397
Query: 343 AEARQALDLLDQW-APMD---VEDSLQLL---SPAFKHSAVRRYAVTRLQQASDEDLLLY 395
A + LDQ P ++ S + L SP F HS L ASD
Sbjct: 398 APSG-----LDQSRIPFSERKLKFSNRFLPVASP-F-HSH---L----LVPASD------ 437
Query: 396 LLQLVQALKYENFEDIMHGYKKLKVP 421
+ + L N + K +++P
Sbjct: 438 --LINKDLVKNNVS--FNA-KDIQIP 458
Score = 34.6 bits (79), Expect = 0.19
Identities = 49/269 (18%), Positives = 76/269 (28%), Gaps = 117/269 (43%)
Query: 19 KIQIKIGTLEGVTLKPDYEKMLSDPMLKYSGLYQEVCADLVVFCQIFSDGVPLSLPISSS 78
+ I G +G ++ +Y M+ + DG + I
Sbjct: 1671 NLTIHFGGEKGKRIRENYSAMI---------------------FETIVDGKLKTEKI--- 1706
Query: 79 YKSFTNRWDWNEWITIPLMFSDLPRNAILALTIYDCGGATQ------------------L 120
F + NE T F +L+ T + TQ L
Sbjct: 1707 ---FK---EINEHSTS-YTFRS-E-KGLLSATQF-----TQPALTLMEKAAFEDLKSKGL 1752
Query: 121 IPIGGTCI--SLFGKY-------GVF-----------RQGMMDLKVWPNQVADPK----- 155
IP T SL G+Y V R GM QVA P+
Sbjct: 1753 IPADATFAGHSL-GEYAALASLADVMSIESLVEVVFYR-GMT------MQVAVPRDELGR 1804
Query: 156 -------VPSSTPGKNTSSEKEQR--ETLAKLSKKF-----HN---------GHMVKIDW 192
+ + S E Q E + K + +N G + +D
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDT 1864
Query: 193 L-DRLTFSKIENIKEKEKKASNYLYLMIE 220
+ + L F K++ I E + S L +E
Sbjct: 1865 VTNVLNFIKLQKIDIIELQKS----LSLE 1889
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 35.9 bits (83), Expect = 0.043
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 329 ALTKFLECVNWELQAEARQALDLLDQWAPMDVEDSLQLLSPAFKHSAVRRYAVTRLQQAS 388
+ L+ N E++ EA L + + L +L K + V + +
Sbjct: 196 CFVEMLQDKNEEVRIEAIIGL------SYRKDKRVLSVLCDELKKNTVYDDIIEAAGELG 249
Query: 389 DEDLLLYLLQLVQ 401
D+ LL L ++
Sbjct: 250 DKTLLPVLDTMLY 262
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 32.1 bits (72), Expect = 0.87
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 358 MDVEDSLQLLSPAFKHS--AVRRYAVTRLQQASDEDLLLYLLQLVQALKYENFED 410
M + QLL + +R + T+L++ S+++ L + Q L EN +
Sbjct: 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKL 55
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 2.2
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 522 KQQSFIEKLVNLVKIVARESG 542
KQ ++KL +K+ A +S
Sbjct: 19 KQA--LKKLQASLKLYADDSA 37
Score = 28.8 bits (63), Expect = 5.3
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 17/43 (39%)
Query: 545 KRKIDRLQALLADSETFKFNFTNFEPLPLPLD--PNVYIKGII 585
K+ + +LQA L K + D P + IK +
Sbjct: 19 KQALKKLQASL------KL----YAD-----DSAPALAIKATM 46
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 2.8
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 20/83 (24%)
Query: 311 EEQDLIWKFRFYLSNQKKALTKFLECVNWELQAEARQALDLLDQWAPMDVEDSLQLLSPA 370
EEQ + S + E + +A++ L++W + ++
Sbjct: 92 EEQRKRLQELDAASKVMEQ----------EWREKAKKD---LEEWN-QRQSEQVE----- 132
Query: 371 FKHSAVRRYAVTRLQQASDEDLL 393
K+ R A Q D D++
Sbjct: 133 -KNKINNRIADKAFYQQPDADII 154
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich,
ADP-ribosylation factors, protein transport; 1.90A {Homo
sapiens} SCOP: b.1.10.3 d.105.1.2
Length = 275
Score = 30.0 bits (67), Expect = 2.8
Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 25/133 (18%)
Query: 585 IPEKAT---LFKSNLMPSRLTFLTTTGTEY-VAIFKHGDDLRQDQLILQII---TLMDKL 637
+PE LFKS+ P LT + TEY + KH + ++ Q TL D+
Sbjct: 21 VPEFRGLGPLFKSSPEP---VALTESETEYVIRCTKH---TFTNHMVFQFDCTNTLNDQT 74
Query: 638 LRSENLDLKLTPYRVLATNTKHGFVQFVDSFPVAEVLATE-GSIQNFFRKHHPSDNGPYG 696
L EN+ +++ P + + P + + G+
Sbjct: 75 L--ENVTVQMEP---------TEAYEVLXYVPARSLPYNQPGTCYTLVALPKEDPTAVAC 123
Query: 697 ISSEIMDTYVRSC 709
S +M V+ C
Sbjct: 124 TFSCMMKFTVKDC 136
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 30.2 bits (67), Expect = 3.5
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 358 MDVEDSL-QLLSPAFKHSAVRRYAVTRLQQASDEDLLLYLLQLVQALKYEN 407
M++ L + +SP A L++A+ E+L +L++L + L
Sbjct: 1 MELITILEKTVSP---DRLELEAAQKFLERAAVENLPTFLVELSRVLANPG 48
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd;
deoxyguanosinetriphosphate triphsphohydrolase,
pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas
syringae PV}
Length = 451
Score = 29.3 bits (66), Expect = 6.7
Identities = 31/150 (20%), Positives = 44/150 (29%), Gaps = 30/150 (20%)
Query: 293 RDTLNTIISYPPSNQLTTEEQDLIWKFRFYLSNQK--KALTKFLECVNWELQAEARQALD 350
TL T + YP + + KF Y S + + L E Q AR L
Sbjct: 177 YATLGTYLKYPWTARHADSLGYKKHKFGCYQSELPILEQIAGKLGLPQLEEQRWARHPLV 236
Query: 351 LLDQWA------PMDVEDSL-----------QLLSPAFKHSAVRRYAVTRLQQASDEDLL 393
L + A +D+ED L LL Y +L
Sbjct: 237 YLMEAADDICYALIDLEDGLEMDLLDYAEVESLLLGLVGDDLPETYR--QLGPGDSRRRK 294
Query: 394 LYLL------QLVQALKY---ENFEDIMHG 414
L +L L A E + ++ G
Sbjct: 295 LAILRGKAIEHLTNAAARAFVEQQDALLAG 324
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide
repeat protein, protein binding; 2.30A {Encephalitozoon
cuniculi}
Length = 242
Score = 28.7 bits (63), Expect = 8.2
Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 9/174 (5%)
Query: 321 FYLSNQKKALTKFLECVNWELQAEARQALDLLDQWA-PMDVEDSLQLLSPAFKHSAVRRY 379
+ KKA+ + +++ + + + + P D E LL S R
Sbjct: 73 KKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREE 132
Query: 380 AVTRLQQASDEDLLLYLLQLVQALKYENFEDIMHGYKKLKVPPAIEASVLAEEMSSNVLE 439
+ ++ + L V+ L EN + K V + E +S +
Sbjct: 133 GIGHYVRSFGKSFLFS---PVENLLLEN--KVPQKRDKENVRQTGRRGIEEEYVSDS--- 184
Query: 440 YNLDSSHAENMDLTSFLIHRASKSLTLANYFFWYLTIESEDQDFTIKQDIRVRE 493
S + ++ S ++N Y + D+ + +R ++
Sbjct: 185 IEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKD 238
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 28.6 bits (63), Expect = 9.5
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 358 MDVEDSL-QLLSPAFKHSAVRRYAVTRLQQASDEDLLLYLLQLVQALKYEN 407
M++ L + +SP A L++A+ E+L +L++L + L
Sbjct: 1 MELITILEKTVSP---DRLELEAAQKFLERAAVENLPTFLVELSRVLANPG 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.401
Gapped
Lambda K H
0.267 0.0525 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,381,201
Number of extensions: 823351
Number of successful extensions: 1854
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1787
Number of HSP's successfully gapped: 39
Length of query: 867
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 765
Effective length of database: 3,853,851
Effective search space: 2948196015
Effective search space used: 2948196015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.1 bits)