BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10442
         (430 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KH8|A Chain A, Crystal Structure Of Maoc-Like Dehydratase From
           Phytophthora Capsici
 pdb|3KH8|B Chain B, Crystal Structure Of Maoc-Like Dehydratase From
           Phytophthora Capsici
          Length = 332

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 17/89 (19%)

Query: 256 QLTVPNLQPNIGLFWYFFTEMFE---HFRVLFIVAFQINSIFLYVLPLTLRL--YKEPVL 310
           ++ +P  QP+       F + F+   H   ++ ++   NS  L++ P   +   +K+P+L
Sbjct: 199 RVQIPKRQPD-------FNDEFKTSPHQAQVYRLSGDYNS--LHIDPEIAKSVGFKQPIL 249

Query: 311 VAICLTGLA--AVFKSYPCVGDIALYLAL 337
             +C  G+A  A+FK + C GD+A + ++
Sbjct: 250 HGLCSMGVASRALFKQF-CGGDVARFKSI 277


>pdb|3V1X|A Chain A, Crystal Structure Of 2-Methylisoborneol Synthase From
           Streptomyces Coelicolor A3(2) In Complex With Mg2+ And
           2-Fluorogeranyl Diphosphate
          Length = 461

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 350 QGFIVACFFIGCSMFAPTVWHLWIYTR 376
            GF V  + +GC   APTV HL + TR
Sbjct: 183 DGFSVGRYMVGCHPDAPTVDHLMLATR 209


>pdb|3V1V|A Chain A, Crystal Structure Of 2-Methylisoborneol Synthase From
           Streptomyces Coelicolor A3(2) In Complex With Mg2+ And
           Geranyl-S-Thiolodiphosphate
          Length = 433

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 350 QGFIVACFFIGCSMFAPTVWHLWIYTR 376
            GF V  + +GC   APTV HL + TR
Sbjct: 155 DGFSVGRYMVGCHPDAPTVDHLMLATR 181


>pdb|2X7B|A Chain A, Crystal Structure Of The N-Terminal Acetylase Ard1 From
           Sulfolobus Solfataricus P2
          Length = 168

 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 256 QLTVPNLQPNIGLFWYFFTEMFEHFRVLFIVAFQINSIFLYVLP 299
           +LT+P   P     +YFF E  + + + F VA   NS+  Y++P
Sbjct: 31  RLTLPENYP-----YYFFVEHLKEYGLAFFVAIVDNSVVGYIMP 69


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.144    0.456 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,562,323
Number of Sequences: 62578
Number of extensions: 433587
Number of successful extensions: 896
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 893
Number of HSP's gapped (non-prelim): 6
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (25.0 bits)