Query psy10442
Match_columns 430
No_of_seqs 133 out of 397
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 18:17:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rce_A Oligosaccharide transfe 7.3 1.9E+03 0.065 23.3 13.8 167 7-204 22-203 (724)
2 2f8e_A VPG protein; RNA-depend 6.6 1.3E+02 0.0045 17.8 0.4 15 57-71 2-16 (26)
3 3hd6_A Ammonium transporter RH 4.3 7E+02 0.024 25.5 4.4 48 323-370 63-116 (490)
4 3ro2_B Peptide of nuclear mito 4.1 2.9E+02 0.0099 16.6 0.8 14 30-46 11-24 (28)
5 1h8b_A ACT-EF34, alpha-actinin 3.8 6.2E+02 0.021 18.4 2.7 21 38-59 6-26 (75)
6 1n0q_A 3ANK, 3 ankyrin repeats 3.4 8.1E+02 0.028 17.1 3.1 25 49-73 20-44 (93)
7 3jtz_A Integrase; four strande 2.5 7E+02 0.024 18.8 1.8 15 45-59 69-83 (88)
8 2ks1_B Epidermal growth factor 2.4 9.4E+02 0.032 16.0 2.1 24 386-409 15-38 (44)
9 1n0r_A 4ANK, 4 ankyrin repeats 2.3 1.2E+03 0.041 16.7 3.1 21 49-69 53-73 (126)
10 1d9s_A Cyclin-dependent kinase 2.3 1.2E+03 0.04 17.6 3.1 22 49-70 62-84 (136)
No 1
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=7.28 E-value=1.9e+03 Score=23.30 Aligned_cols=167 Identities=15% Similarity=0.209 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhh--ccchh-hhccceeeeccCCchhhHhHHHHHHhCCCCCCCCCccccchHHHHHHHhhhcCCCcc
Q psy10442 7 VQFVISTLLRYWLCH--SEFKS-LLQDRVEISNPINAWKNLVEGVTLMKDQVNPYDGDIFHESPLILHMFKFIIGNDNPY 83 (430)
Q Consensus 7 ~~~~~~~~lRl~L~~--~~~~~-~l~~~~evsTp~tsy~~~~Eg~~l~~~g~sPY~~~tyh~tPLLl~ll~~~~~~~~~~ 83 (430)
.++++|+.+|+.-.. .+..+ ..++.+-++| .|.|.-.+.|-...+++..|-+.+-+ .|++.++...+....+ .
T Consensus 22 ~~~~~sl~~R~~~~~w~~~~~~f~~~~~~~~~~-~D~yy~~r~ar~~l~~~~~p~~~~p~--g~~~~~l~a~l~~i~g-~ 97 (724)
T 3rce_A 22 IAFAFSVLCRLYWVAWASEFYEFFFNDQLMITT-NDGYAFAEGARDMIAGFHQPNDLSYF--GSSLSTLTYWLYSILP-F 97 (724)
T ss_dssp HHHHHHHHHHTHHHHHHSSCGGGEETTEECCSC-HHHHHHHHHHHHHHHSCCCTTSCCCT--TCHHHHHHHHHHHSCS-S
T ss_pred HHHHHHHHHHHhhHHhhccCcceEECCEEeecc-CCHHHHHHHHHHHHhcCCCCCCCCCC--cchHHHHHHHHHHHcC-C
Confidence 355667788887432 22222 2233333333 23577777666677777666655433 3555555544443321 1
Q ss_pred c-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhHhhhcccccchhhHHHHHHhhchhHHHhhcc
Q psy10442 84 V-QQSIPFIFILCDLLSAILLYYMAQSYMIQMVQIEKQNKHKYAKNITRILINIEDLVNVPKYVALAYLYNPFSILNCIC 162 (430)
Q Consensus 84 ~-~~~~~~lf~~~Dll~a~ll~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yLfNP~ti~~~~~ 162 (430)
+ ...+..+=.++-.++++..+.+.|.. ..++ .....+.+--..|--+.=+.+
T Consensus 98 sl~~v~~~lp~ifg~L~vi~~yll~~el--------~~~~-------------------aGl~AAll~ai~P~~i~RS~a 150 (724)
T 3rce_A 98 SFESIILYMSTFFASLIVVPIILIAREY--------KLTT-------------------YGFIAALLGSIANSYYNRTMS 150 (724)
T ss_dssp CHHHHHHHHHHHHGGGGHHHHHHHHHHT--------TCHH-------------------HHHHHHHHHTTSHHHHHTSST
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCch-------------------HHHHHHHHHHHHHHHHHHhcc
Confidence 1 01111111223333444444444321 1010 234455556778876666666
Q ss_pred cC--hhHHHHHHHHHHHHHHHc----Cch---hHHHHHHHH--HhhhchhhHH
Q psy10442 163 LT--STVFANFFLCLFFFAFVT----QKP---ILSSIALTL--TVQQNIYPIT 204 (430)
Q Consensus 163 ~s--t~~~~~~~vl~~l~~~~~----~~~---~~a~~~lal--a~~~~~YPii 204 (430)
|. +|++.-++.++++|+..+ ++. .+||+++|+ .+|..-|.++
T Consensus 151 G~~D~e~l~i~~~ll~~~~~i~alk~~~~~~~~lagl~~~ly~~~~~ggy~fi 203 (724)
T 3rce_A 151 GYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSSYSLN 203 (724)
T ss_dssp TCCSGGGGTTHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCGGGHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcchhHHH
Confidence 55 455566666666665432 332 356666653 3444445533
No 2
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=6.59 E-value=1.3e+02 Score=17.84 Aligned_cols=15 Identities=33% Similarity=0.753 Sum_probs=11.6
Q ss_pred CCCCCccccchHHHH
Q psy10442 57 PYDGDIFHESPLILH 71 (430)
Q Consensus 57 PY~~~tyh~tPLLl~ 71 (430)
||.|..=||.||=+.
T Consensus 2 pyagplerq~plkvk 16 (26)
T 2f8e_A 2 PYAGPLERQRPLKVK 16 (26)
T ss_pred CcCCchhhcCcceee
Confidence 888888888887443
No 3
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=4.30 E-value=7e+02 Score=25.48 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=25.0
Q ss_pred cccccchhhHHHHH----Hhhhhhhhc--cchhhHHHHHHHHHHHHHHHHHHHH
Q psy10442 323 KSYPCVGDIALYLA----LMPLCKYLF--PFMQQGFIVACFFIGCSMFAPTVWH 370 (430)
Q Consensus 323 k~ypT~~d~~~~ls----LLPl~~~~~--~~~~~~~~~~~~~l~~~~L~p~~~~ 370 (430)
+.||..||.-.=+. +|=-+.+.. ...-..++++..-+|-.+|.+-++|
T Consensus 63 ~~Yp~fqDv~vMi~~GfGFLmtflkryg~ssv~~n~l~~a~~~Qwa~l~~g~~~ 116 (490)
T 3hd6_A 63 YRYPSFQDVHVMVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQGWFH 116 (490)
T ss_dssp HHHHHHHHHHHHHHTHHHHHGGGSTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCccchhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46999999854221 222222211 1233344555545666777777665
No 4
>3ro2_B Peptide of nuclear mitotic apparatus protein 1; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Homo sapiens}
Probab=4.14 E-value=2.9e+02 Score=16.59 Aligned_cols=14 Identities=29% Similarity=0.790 Sum_probs=10.1
Q ss_pred cceeeeccCCchhhHhH
Q psy10442 30 DRVEISNPINAWKNLVE 46 (430)
Q Consensus 30 ~~~evsTp~tsy~~~~E 46 (430)
+.+| +.+||.|+.|
T Consensus 11 depe---qlddw~riae 24 (28)
T 3ro2_B 11 DEPE---QLDDWNRIAE 24 (28)
T ss_dssp CCCC---CCCCTTTGGG
T ss_pred CCcc---cchhHHHHHH
Confidence 3455 6889998876
No 5
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=3.85 E-value=6.2e+02 Score=18.45 Aligned_cols=21 Identities=10% Similarity=0.330 Sum_probs=16.0
Q ss_pred CCchhhHhHHHHHHhCCCCCCC
Q psy10442 38 INAWKNLVEGVTLMKDQVNPYD 59 (430)
Q Consensus 38 ~tsy~~~~Eg~~l~~~g~sPY~ 59 (430)
-++-..++||.+.+ .+++||=
T Consensus 6 ~~~~eel~eAFr~f-~dg~G~I 26 (75)
T 1h8b_A 6 TDTAEQVIASFRIL-ASDKPYI 26 (75)
T ss_dssp CSTHHHHHHHHHHH-TTSCSSB
T ss_pred CCCHHHHHHHHHHH-hcCCCCc
Confidence 34678899999998 6777764
No 6
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=3.37 E-value=8.1e+02 Score=17.14 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=20.9
Q ss_pred HHHhCCCCCCCCCccccchHHHHHH
Q psy10442 49 TLMKDQVNPYDGDIFHESPLILHMF 73 (430)
Q Consensus 49 ~l~~~g~sPY~~~tyh~tPLLl~ll 73 (430)
.++++|.|+-.++....|||-....
T Consensus 20 ~Ll~~g~~~n~~d~~g~t~L~~A~~ 44 (93)
T 1n0q_A 20 LLLEAGADVNAKDKNGRTPLHLAAR 44 (93)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHcCCCCcccCCCCCCHHHHHHH
Confidence 5778899999999999999977654
No 7
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=2.46 E-value=7e+02 Score=18.84 Aligned_cols=15 Identities=7% Similarity=-0.106 Sum_probs=7.5
Q ss_pred hHHHHHHhCCCCCCC
Q psy10442 45 VEGVTLMKDQVNPYD 59 (430)
Q Consensus 45 ~Eg~~l~~~g~sPY~ 59 (430)
.|+-.++.+|+||=.
T Consensus 69 ~~~r~~l~~Gidp~~ 83 (88)
T 3jtz_A 69 EGIRKMLALNINLEH 83 (88)
T ss_dssp HHHHHHHTCC-----
T ss_pred HHHHHHHHcCCCchh
Confidence 455578899999954
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=2.40 E-value=9.4e+02 Score=16.05 Aligned_cols=24 Identities=8% Similarity=0.085 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10442 386 VTLAFATSQIFLLTDLLFAYLKRD 409 (430)
Q Consensus 386 ~tLvf~~~~~~ll~d~i~~~l~~~ 409 (430)
.+.+-.++-..++.-.++-++||+
T Consensus 15 ~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 15 TGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eehhHHHHHHHHHHHHHHHHhhhh
Confidence 344444555555555555555554
No 9
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=2.32 E-value=1.2e+03 Score=16.68 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=11.1
Q ss_pred HHHhCCCCCCCCCccccchHH
Q psy10442 49 TLMKDQVNPYDGDIFHESPLI 69 (430)
Q Consensus 49 ~l~~~g~sPY~~~tyh~tPLL 69 (430)
.++++|.+|-..+....|||-
T Consensus 53 ~Ll~~g~~~~~~~~~g~t~l~ 73 (126)
T 1n0r_A 53 LLLEAGADVNAKDKNGRTPLH 73 (126)
T ss_dssp HHHHTTCCTTCCCTTSCCHHH
T ss_pred HHHHcCCCCcccCCCCCcHHH
Confidence 345555555555555555543
No 10
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=2.30 E-value=1.2e+03 Score=17.57 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=13.8
Q ss_pred HHHhCCCCCCCCCcc-ccchHHH
Q psy10442 49 TLMKDQVNPYDGDIF-HESPLIL 70 (430)
Q Consensus 49 ~l~~~g~sPY~~~ty-h~tPLLl 70 (430)
.++++|.||-..+.. ..|||-.
T Consensus 62 ~Ll~~g~~~~~~~~~~g~t~L~~ 84 (136)
T 1d9s_A 62 LLLLHGAEPNCADPATLTRPVHD 84 (136)
T ss_dssp HHHHHTCCSSCCBTTTTBCHHHH
T ss_pred HHHHCCCCCCCcCCCCCCCHHHH
Confidence 456667777666666 5666643
Done!