Query psy10442
Match_columns 430
No_of_seqs 133 out of 397
Neff 6.7
Searched_HMMs 13730
Date Fri Aug 16 18:17:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10442.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10442hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bd8a_ d.211.1.1 (A:) Cell cy 4.2 3.2E+02 0.023 19.7 3.7 29 45-73 114-142 (156)
2 d1v54c_ f.25.1.1 (C:) Mitochon 3.8 5.2E+02 0.038 21.5 5.1 28 250-277 62-90 (259)
3 d1hdma2 d.19.1.1 (A:13-93) Cla 3.8 51 0.0037 23.5 -1.6 25 251-280 4-28 (81)
4 d1zaka2 g.41.2.1 (A:128-158) M 3.8 1.3E+02 0.0095 17.4 0.5 11 55-65 4-14 (31)
5 d2hrkb1 a.45.1.2 (B:4-121) GU4 3.6 2.2E+02 0.016 21.1 2.1 23 322-344 58-80 (118)
6 d2a7la1 d.20.1.1 (A:1-117) Ubi 3.3 1.5E+02 0.011 21.8 0.6 11 55-65 46-56 (117)
7 d1awcb_ d.211.1.1 (B:) GA bind 3.3 3.6E+02 0.026 19.0 3.1 25 49-73 118-142 (153)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.1 7.9E+02 0.058 20.2 5.6 33 179-211 22-61 (248)
9 d1yh2a1 d.20.1.1 (A:1-154) Ubi 3.1 1.6E+02 0.011 22.6 0.6 23 38-65 31-53 (154)
10 d1m3ga_ c.45.1.1 (A:) Mapk pho 2.9 3.9E+02 0.028 19.7 3.0 23 245-268 108-131 (145)
No 1
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.19 E-value=3.2e+02 Score=19.74 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=20.6
Q ss_pred hHHHHHHhCCCCCCCCCccccchHHHHHH
Q psy10442 45 VEGVTLMKDQVNPYDGDIFHESPLILHMF 73 (430)
Q Consensus 45 ~Eg~~l~~~g~sPY~~~tyh~tPLLl~ll 73 (430)
.|.++++..|.||..++...+|||-.+..
T Consensus 114 ~~i~~~L~~~~~~~~~d~~G~TpL~~A~~ 142 (156)
T d1bd8a_ 114 TAVVSFLAAESDLHRRDARGLTPLELALQ 142 (156)
T ss_dssp HHHHHHHHTTSCTTCCCTTSCCHHHHHHH
T ss_pred ccccccccccccccccCCCCCCHHHHHHH
Confidence 45666666777887777777888766643
No 2
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.84 E-value=5.2e+02 Score=21.45 Aligned_cols=28 Identities=14% Similarity=0.405 Sum_probs=18.6
Q ss_pred Hhhh-hheeeccCCCCCchhhHHHHHhhh
Q psy10442 250 AATY-GFQLTVPNLQPNIGLFWYFFTEMF 277 (430)
Q Consensus 250 ~~ty-~~~l~~~Dl~pN~gl~WYff~emF 277 (430)
|+++ |.|=...|..--+|.+|+..+|+.
T Consensus 62 E~~~~G~ht~~v~~~~~~G~~lFi~SEv~ 90 (259)
T d1v54c_ 62 ESTFQGHHTPAVQKGLRYGMILFIISEVL 90 (259)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCccHHHhhhhHHHHHHHHHHHHH
Confidence 4444 455545555556899999999953
No 3
>d1hdma2 d.19.1.1 (A:13-93) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Probab=3.82 E-value=51 Score=23.47 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=20.1
Q ss_pred hhhhheeeccCCCCCchhhHHHHHhhhhhH
Q psy10442 251 ATYGFQLTVPNLQPNIGLFWYFFTEMFEHF 280 (430)
Q Consensus 251 ~ty~~~l~~~Dl~pN~gl~WYff~emF~~f 280 (430)
+|+...+...|-+||.|+. |+||.=
T Consensus 4 HTf~htlfCQ~~sP~~gLs-----eayD~d 28 (81)
T d1hdma2 4 HTFLHTVYCQDGSPSVGLS-----EAYDED 28 (81)
T ss_dssp EEEEEEEEEESSSSSEEEE-----EEETTE
T ss_pred ccceeEEEecCCCCccchH-----hhcCcc
Confidence 5677788999999999986 777753
No 4
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=3.77 E-value=1.3e+02 Score=17.44 Aligned_cols=11 Identities=36% Similarity=0.905 Sum_probs=8.5
Q ss_pred CCCCCCCcccc
Q psy10442 55 VNPYDGDIFHE 65 (430)
Q Consensus 55 ~sPY~~~tyh~ 65 (430)
.||-.|+.||-
T Consensus 4 ~DP~TG~iYH~ 14 (31)
T d1zaka2 4 LDPVTGKIYHL 14 (31)
T ss_dssp ECTTTCCEEES
T ss_pred CCCCCCcEeEE
Confidence 47888888884
No 5
>d2hrkb1 a.45.1.2 (B:4-121) GU4 nucleic-binding protein 1, Arc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.62 E-value=2.2e+02 Score=21.11 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=18.9
Q ss_pred ccccccchhhHHHHHHhhhhhhh
Q psy10442 322 FKSYPCVGDIALYLALMPLCKYL 344 (430)
Q Consensus 322 Fk~ypT~~d~~~~lsLLPl~~~~ 344 (430)
=+.+||..|...|-.+.|+....
T Consensus 58 g~~~~T~ADi~~f~~l~~~~~~~ 80 (118)
T d2hrkb1 58 STLYPTSTDVHVFEVALPLIKDL 80 (118)
T ss_dssp SCSSCCHHHHHHHHHHHHHHHHH
T ss_pred eCCcCCHHHHHHHHHHHHHHHhh
Confidence 35689999999999999976543
No 6
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.28 E-value=1.5e+02 Score=21.79 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=9.5
Q ss_pred CCCCCCCcccc
Q psy10442 55 VNPYDGDIFHE 65 (430)
Q Consensus 55 ~sPY~~~tyh~ 65 (430)
++||+|+.||.
T Consensus 46 ~tpy~gg~f~~ 56 (117)
T d2a7la1 46 GTLYEGEKFQL 56 (117)
T ss_dssp TSTTTTCEEEE
T ss_pred CccccCCeeeE
Confidence 57999999985
No 7
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.26 E-value=3.6e+02 Score=19.03 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=16.5
Q ss_pred HHHhCCCCCCCCCccccchHHHHHH
Q psy10442 49 TLMKDQVNPYDGDIFHESPLILHMF 73 (430)
Q Consensus 49 ~l~~~g~sPY~~~tyh~tPLLl~ll 73 (430)
.++++|.||-.++...+|||-.+.-
T Consensus 118 ~ll~~gad~~~~d~~g~Tpl~~A~~ 142 (153)
T d1awcb_ 118 LLIKYGADVHTQSKFCKTAFDISID 142 (153)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred eccccccCCcccCCCCCCHHHHHHH
Confidence 4566677777777777777766543
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.14 E-value=7.9e+02 Score=20.24 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=16.9
Q ss_pred HHHcCchhHHHHHHHHH-----hhhc--hhhHHHHHHHHH
Q psy10442 179 AFVTQKPILSSIALTLT-----VQQN--IYPITLLVPACV 211 (430)
Q Consensus 179 ~~~~~~~~~a~~~lala-----~~~~--~YPiil~~P~~l 211 (430)
...+|++..+++.+++. +|++ .||.=|+.|-++
T Consensus 22 ~~~~~~~~~a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~ 61 (248)
T d2r6gf1 22 MYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMA 61 (248)
T ss_dssp HHGGGCHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHH
T ss_pred HHHcchHHHHHHHHHHHHheEEEEEccCccceehhhhHHH
Confidence 33457776666544432 3433 555555555443
No 9
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}
Probab=3.09 E-value=1.6e+02 Score=22.65 Aligned_cols=23 Identities=17% Similarity=0.502 Sum_probs=15.3
Q ss_pred CCchhhHhHHHHHHhCCCCCCCCCcccc
Q psy10442 38 INAWKNLVEGVTLMKDQVNPYDGDIFHE 65 (430)
Q Consensus 38 ~tsy~~~~Eg~~l~~~g~sPY~~~tyh~ 65 (430)
...|...-.| ..++||+|++|+.
T Consensus 31 ~~~w~~~I~G-----p~~TpY~gg~f~~ 53 (154)
T d1yh2a1 31 MDDLRAQILG-----GANTPYEKGVFKL 53 (154)
T ss_dssp TTEEEEEEEC-----CTTSTTTTCEEEE
T ss_pred hhhhhceEeC-----CCCCCCCCCEEEE
Confidence 3356655544 2357999999985
No 10
>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]}
Probab=2.95 E-value=3.9e+02 Score=19.66 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=15.8
Q ss_pred CchhHHhhhhhe-eeccCCCCCchh
Q psy10442 245 DTSFLAATYGFQ-LTVPNLQPNIGL 268 (430)
Q Consensus 245 s~~Fl~~ty~~~-l~~~Dl~pN~gl 268 (430)
+|++-+ ++-+. -.|++..||-|.
T Consensus 108 ~~~~~~-A~~~v~~~Rp~v~pn~~f 131 (145)
T d1m3ga_ 108 RVRLDE-AFDFVKQRRGVISPNFSF 131 (145)
T ss_dssp CCHHHH-HHHHHSCSCCCCSSCSSC
T ss_pred CCCHHH-HHHHHHHHCCCCCCCHHH
Confidence 488544 45444 558889999984
Done!