RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10442
         (430 letters)



>gnl|CDD|219152 pfam06728, PIG-U, GPI transamidase subunit PIG-U.  Many eukaryotic
           proteins are anchored to the cell surface via
           glycosylphosphatidylinositol (GPI), which is
           posttranslationally attached to the carboxyl-terminus by
           GPI transamidase. The mammalian GPI transamidase is a
           complex of at least four subunits, GPI8, GAA1, PIG-S,
           and PIG-T. PIG-U is thought to represent a fifth subunit
           in this complex and may be involved in the recognition
           of either the GPI attachment signal or the lipid portion
           of GPI.
          Length = 373

 Score =  304 bits (780), Expect = e-100
 Identities = 149/396 (37%), Positives = 222/396 (56%), Gaps = 34/396 (8%)

Query: 4   GLVVQFVISTLLRYWLCHSEFKSLLQDRVEISNPINAWKNLVEGVTLMKDQVNPYDGDIF 63
           G+ ++ ++  L            LL  RVE+S P+ ++K L EG+ L++  ++PYDG + 
Sbjct: 3   GIALRLLLLLLFPSLP------DLLSSRVELSTPLTSFKRLQEGLYLLRHGISPYDGGVV 56

Query: 64  HESPLILHMFKFIIGNDNPYVQQSIPFIFILCDLLSAILLYYMAQSYMIQMVQIEKQNKH 123
           H+ PL+L +  F+     P +      ++IL DLL A+LLY +A+SY             
Sbjct: 57  HQPPLLLALLSFLNKKSAPIL---TSLLYILADLLIALLLYAIAKSY------------- 100

Query: 124 KYAKNITRILINIEDLVNVPKYVALAYLYNPFSILNCICLTSTVFANFFLCLFFFAFVTQ 183
              K  + +L +  DL + P  +A  YL+NP +IL+C+ L++TVF N  L L   + V  
Sbjct: 101 --QKTTSELLKSPRDLRSSPLLIAAIYLFNPLTILSCVSLSTTVFTNLLLLLSLLSAVKG 158

Query: 184 KPILSSIALTLTVQQNIYPITLLVPACVHFHQ-------YKKSWRLFLAGFLL--CYSGF 234
             +LS+I+L L    ++YP+ LL P  +  +               FL   LL       
Sbjct: 159 NRLLSAISLALASYLSLYPLLLLPPLLLLLYIRFSKSSKSSSKLSKFLLILLLFLLTLLA 218

Query: 235 LYFCLGLMNQDTSFLAATYGFQLTVPNLQPNIGLFWYFFTEMFEHFRVLFIVAFQINSIF 294
           L     L+     FL ATYGF LTV +L PN+GL+WYFFTEMF+HFR+ F+  FQ++  F
Sbjct: 219 LLLLSFLITGSWDFLEATYGFILTVSDLTPNLGLWWYFFTEMFDHFRLFFLFVFQLH-PF 277

Query: 295 LYVLPLTLRLYKEPVLVAICLTGLAAVFKSYPCVGDIALYLALMPLCKYLFPFMQQGFIV 354
           +YVLPLT+RL K+P+     L  L AVFK YP VGD+ LYL+L+PL ++LF +M+  F+V
Sbjct: 278 IYVLPLTIRLRKQPLFALFILLALIAVFKPYPTVGDLGLYLSLLPLFRHLFKYMRYPFLV 337

Query: 355 ACFFIGCSMFAPTVWHLWIYTRSANANFYFGVTLAF 390
               +   + +P  +HLWIY  S NANF+F +TL +
Sbjct: 338 LLTLLVALLLSPIFYHLWIYLGSGNANFFFAITLVY 373


>gnl|CDD|232989 TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase, beta subunit.
           Every known example of the phenylalanyl-tRNA synthetase,
           except the monomeric form of mitochondrial, is an alpha
           2 beta 2 heterotetramer. The beta subunits break into
           two subfamilies that are considerably different in
           sequence, length, and pattern of gaps. This model
           represents the subfamily that includes the beta subunit
           from eukaryotic cytosol, the Archaea, and spirochetes
           [Protein synthesis, tRNA aminoacylation].
          Length = 551

 Score = 28.6 bits (64), Expect = 8.9
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 380 ANFYFGVTLAFA-TSQIFLLTDLLFAYLKRDYTLENGIQKT-IKGKPARLVLD 430
                G+T + A  ++I  +   L   L  +Y +E     + I G+ A++V +
Sbjct: 464 TKLAVGITHSEANFNEIKSIVAALARELGIEYEIEESEHPSFIPGRGAKIVFE 516


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.333    0.145    0.463 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,173,654
Number of extensions: 2204359
Number of successful extensions: 2930
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2886
Number of HSP's successfully gapped: 117
Length of query: 430
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 330
Effective length of database: 6,502,202
Effective search space: 2145726660
Effective search space used: 2145726660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 60 (26.8 bits)