RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10442
         (430 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 42/273 (15%), Positives = 83/273 (30%), Gaps = 90/273 (32%)

Query: 187 LSSIAL-TLTVQQNIYPITLLVPACVHFH--QYKKSWRLFLAGFLLCYSGFLYFCLGLMN 243
           + + +   LT+        LLVP    F   Q ++    F         GF        +
Sbjct: 1   MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQ---FNKILPEPTEGF-----AADD 52

Query: 244 QDTSF--LAATY-GFQLTVPNLQPN-IGLFWYFFTEMFEHFRVLFIVAFQINSIFLYVLP 299
           + T+   L   + G+      ++P+ +G F          F   ++    I+++   +L 
Sbjct: 53  EPTTPAELVGKFLGY--VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110

Query: 300 ----------LTLRLY-------KEPV------------------LVAI---------CL 315
                       ++ Y       K P                   LVAI           
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170

Query: 316 TGLAAVFKSY-PCVGDIALYLA--LMPL------CKYLFPFMQQGF-IVACFFIGCSMFA 365
             L  ++++Y   VGD+  + A  L  L       + +F    QG  I+           
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT---QGLNILE---------- 217

Query: 366 PTVWHLWIYTRSANANFYFGVTLAFATSQIFLL 398
                 W+   S   +  + +++  +   I ++
Sbjct: 218 ------WLENPSNTPDKDYLLSIPISCPLIGVI 244


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.4 bits (70), Expect = 0.81
 Identities = 65/427 (15%), Positives = 125/427 (29%), Gaps = 129/427 (30%)

Query: 17  YWL----CHSEFKSL--LQD-RVEISNPINAWKNLVEGVTLMKDQVNPYDGDIFHESP-- 67
           +WL    C+S    L  LQ    +I     +  +    + L    +      +    P  
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 68  ---LILHMFKFIIGNDNPYVQQS-IPFIF-ILCDLL-----SAILLYYMAQSYM-IQMVQ 116
              L+L          N  VQ +     F + C +L       +  +  A +   I +  
Sbjct: 245 NCLLVL---------LN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 117 IEKQNKHKYAKNI-TRIL-INIEDLVNVPKYVALAYLYNPFSILNCICLTSTVFANFFLC 174
                     K++  + L    +DL   P+        NP  +     + +    +    
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDL---PR---EVLTTNPRRL----SIIAESIRDGLAT 343

Query: 175 LFFFAFVTQKPILSSIALTLTVQQN-----------IYPITLLVPACV------------ 211
              +  V    + + I  +L V +            ++P +  +P  +            
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 212 ------HFHQY------KKSWRLFLAGFLLCYSGFLYFCLGLMNQDT---SFLAATYGFQ 256
                   H+Y       K   + +       S +L   + L N+     S +   Y   
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISI------PSIYLELKVKLENEYALHRSIVDH-YNIP 456

Query: 257 LTVPN---LQPNIGLFWYFF----------TEMFEHFRVLFI-------------VAFQI 290
            T  +   + P +  ++Y             E    FR++F+              A+  
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516

Query: 291 NSIFLYVLPLTLRLYK----------EPVLVAIC--LTGLAAVFKSYPCVGDIALYLALM 338
           +   L  L   L+ YK          E ++ AI   L  +           D+ L +ALM
Sbjct: 517 SGSILNTL-QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT-DL-LRIALM 573

Query: 339 PLCKYLF 345
              + +F
Sbjct: 574 AEDEAIF 580


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           RED beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 28.3 bits (63), Expect = 5.9
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 23  EFKSLLQDRVEIS---NPINAWKNLVEGVTLMKDQVNPYD 59
           +FK    D+V+I            L++G TL   +   +D
Sbjct: 944 QFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFD 983


>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
           novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
           {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
           2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
           1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
           3bjm_A* 3eio_A* ...
          Length = 740

 Score = 27.9 bits (62), Expect = 8.9
 Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 3/57 (5%)

Query: 201 YPITLLVPACVHFHQYKKSWRLFLAGFLLCYSGFLYFCL---GLMNQDTSFLAATYG 254
           YP+ L V A     +    +RL  A +L      +       G   Q    + A   
Sbjct: 502 YPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINR 558


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.333    0.145    0.463 

Gapped
Lambda     K      H
   0.267   0.0620    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,439,293
Number of extensions: 370225
Number of successful extensions: 691
Number of sequences better than 10.0: 1
Number of HSP's gapped: 685
Number of HSP's successfully gapped: 15
Length of query: 430
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 334
Effective length of database: 4,021,377
Effective search space: 1343139918
Effective search space used: 1343139918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 59 (26.7 bits)