BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10443
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 304 bits (779), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 137/189 (72%), Positives = 168/189 (88%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 RRQRKCVII 195
+R+RKC+++
Sbjct: 184 KRKRKCLLL 192
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 301 bits (772), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 136/189 (71%), Positives = 167/189 (88%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 RRQRKCVII 195
+R+RKC+++
Sbjct: 184 KRKRKCLLL 192
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 301 bits (771), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 136/189 (71%), Positives = 167/189 (88%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 RRQRKCVII 195
+R+RKC+++
Sbjct: 184 KRKRKCLLL 192
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 301 bits (770), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 136/189 (71%), Positives = 167/189 (88%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDV LIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 RRQRKCVII 195
+R+RKC+++
Sbjct: 184 KRKRKCLLL 192
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 293 bits (750), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 133/181 (73%), Positives = 160/181 (88%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 R 187
+
Sbjct: 184 K 184
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 292 bits (748), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 130/191 (68%), Positives = 165/191 (86%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VD PV+LGLWDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
EDYDRLRPLSYPQTDVFLIC+S+VSP+S++NV +KW+PE++HHCP PIILVGTK+DLR+
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 121
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
D++T+ L E+ L+P+ QG LA +I +VKY+ECSALTQRGL+ VFDEA+RAVL P+P
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQP 181
Query: 185 VKRRQRKCVII 195
++++R C ++
Sbjct: 182 TRQQKRACSLL 192
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 290 bits (742), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 133/186 (71%), Positives = 161/186 (86%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61
S + IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDT
Sbjct: 1 GSPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 60
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKID 121
AGQEDYDRLRPLSYPQTDV LIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+D
Sbjct: 61 AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 120
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
LR+D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL
Sbjct: 121 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180
Query: 182 PEPVKR 187
P PVK+
Sbjct: 181 PPPVKK 186
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 290 bits (741), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 132/181 (72%), Positives = 159/181 (87%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDV LIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 68 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 127
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 128 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 187
Query: 187 R 187
+
Sbjct: 188 K 188
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 290 bits (741), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 132/181 (72%), Positives = 159/181 (87%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDV LIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P PVK
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVK 183
Query: 187 R 187
+
Sbjct: 184 K 184
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 288 bits (738), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 130/177 (73%), Positives = 157/177 (88%)
Query: 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG 63
G+ IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAG
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 87
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123
QEDYDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR
Sbjct: 88 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
+D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 287 bits (735), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 129/177 (72%), Positives = 157/177 (88%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
EDYDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL+
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 287 bits (735), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 129/176 (73%), Positives = 156/176 (88%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQ
Sbjct: 21 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 80
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
EDYDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+
Sbjct: 81 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 140
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 286 bits (733), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 129/176 (73%), Positives = 156/176 (88%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
EDYDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 286 bits (732), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 129/177 (72%), Positives = 156/177 (88%)
Query: 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG 63
G+ IKCVVVGDG VGKTC+LISYTT++F GEY+PTVFDNYSA VDG PV+LGLWDTAG
Sbjct: 11 GQAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 70
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123
QEDYDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR
Sbjct: 71 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 130
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
+D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL
Sbjct: 131 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 286 bits (732), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 129/177 (72%), Positives = 156/177 (88%)
Query: 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG 63
G+ IKCVVVGDG VGKTC+LISYTT++ PGEY+PTVFDNYSA VDG PV+LGLWDTAG
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 87
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123
QEDYDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR
Sbjct: 88 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
+D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 286 bits (732), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 129/176 (73%), Positives = 156/176 (88%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
EDYDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 286 bits (732), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 131/180 (72%), Positives = 158/180 (87%), Gaps = 1/180 (0%)
Query: 2 SSG-RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
SSG + IKCVVVGDG VGK C+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWD
Sbjct: 5 SSGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 64
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDYDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+
Sbjct: 65 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 124
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLR+D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL
Sbjct: 125 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 286 bits (731), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 129/177 (72%), Positives = 156/177 (88%)
Query: 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG 63
G+ IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAG
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 87
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123
EDYDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR
Sbjct: 88 LEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
+D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 284 bits (727), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 128/175 (73%), Positives = 155/175 (88%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
EDYDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAV
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 283 bits (724), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 128/176 (72%), Positives = 155/176 (88%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAG
Sbjct: 5 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 64
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
EDYDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP+ PIILVGTK+DLR+
Sbjct: 65 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 124
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
D++T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 283 bits (723), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 128/176 (72%), Positives = 154/176 (87%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAG ED
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF +V +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 275
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P
Sbjct: 276 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 283 bits (723), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 128/176 (72%), Positives = 154/176 (87%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAG ED
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF +V +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 275
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P
Sbjct: 276 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 283 bits (723), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 128/176 (72%), Positives = 154/176 (87%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAG ED
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFLIC+S+VSP+SF +V +KWYPE++HHCP+ PIILVGTK+DLR+D+
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 275
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
+T+ L E+ L+P+ QG +A +I AVKY+ECSALTQRGL+ VFDEA+RAVL P
Sbjct: 276 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 281 bits (719), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 127/178 (71%), Positives = 156/178 (87%)
Query: 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTA 62
S + IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTA
Sbjct: 1 SMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 60
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDL 122
GQEDYDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP PI+LVGTK+DL
Sbjct: 61 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDL 120
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
R+D++T+ L ++ L+P+ QG +A +I +VKY+ECSALTQRGL+ VFDEA+RAVL
Sbjct: 121 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 281 bits (719), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 127/178 (71%), Positives = 156/178 (87%)
Query: 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTA 62
S + IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTA
Sbjct: 1 SMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 60
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDL 122
GQEDYDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP PI+LVGTK+DL
Sbjct: 61 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDL 120
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
R+D++T+ L ++ L+P+ QG +A +I +VKY+ECSALTQRGL+ VFDEA+RAVL
Sbjct: 121 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 281 bits (718), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 132/191 (69%), Positives = 164/191 (85%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
EDYDRLRPLSYPQTDVFLIC+S+VSP+SF+NV +KWYPE++HHCP PI+LVGTK+DLR+
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 121
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
D++T+ L ++ L+P+ QG +A +I +VKY+ECSALTQRGL+ VFDEA+RAVL P P
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLGPPP 181
Query: 185 VKRRQRKCVII 195
VK+ +KC +
Sbjct: 182 VKKPGKKCTVF 192
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 279 bits (714), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 133/203 (65%), Positives = 160/203 (78%), Gaps = 19/203 (9%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61
S + IKCVVVGDG VGKTC+LISYTT++FPGEY+PTVFDNYSA VDG PV+LGLWDT
Sbjct: 1 GSMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 60
Query: 62 AGQEDYDRLRPLSYPQT-------------------DVFLICYSVVSPSSFDNVTSKWYP 102
AGQEDYDRLRPLSYPQT DVFLIC+S+VSP+SF+NV +KWYP
Sbjct: 61 AGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYP 120
Query: 103 ELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162
E++HHCP+ PIILVGTK+DLR+D++T+ L E+ L+P+ QG +A +I AVKY+ECSA
Sbjct: 121 EVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 180
Query: 163 LTQRGLRQVFDEAVRAVLRPEPV 185
LTQRGL+ VFDEA+RAVL P PV
Sbjct: 181 LTQRGLKTVFDEAIRAVLCPPPV 203
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 277 bits (709), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 126/178 (70%), Positives = 154/178 (86%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ IKCVVVGD VGKTC+LISYTT++FPGEY+PTVFDNYSA VD PV+LGLWDTAGQ
Sbjct: 8 QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 67
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
EDYDRLRPLSYPQTDVFLIC+S+VSP+S++NV +KW+PE++HHCP PIILVGTK+DLR+
Sbjct: 68 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 127
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
D++T+ L E+ L+P+ QG LA +I +VKY+ECSALTQRGL+ VFDEA+RAVL P
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCP 185
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 277 bits (708), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 126/179 (70%), Positives = 154/179 (86%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61
S + IKCVVVGD VGKTC+LISYTT++FPGEY+PTVFDNYSA VD PV+LGLWDT
Sbjct: 6 GSMQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDT 65
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKID 121
AGQEDYDRLRPLSYPQTDVFLIC+S+VSP+S++NV +KW+PE++HHCP PIILVGTK+D
Sbjct: 66 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLD 125
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
LR+D++T+ L E+ L+P+ QG LA +I +VKY+ECSALTQRGL+ VFDEA+RAVL
Sbjct: 126 LRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 266 bits (680), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 122/193 (63%), Positives = 152/193 (78%), Gaps = 1/193 (0%)
Query: 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTA 62
S + IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DTA
Sbjct: 1 SMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 60
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDL 122
GQEDYDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDL
Sbjct: 61 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 120
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
R+D T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L P
Sbjct: 121 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP 180
Query: 183 EPVKRRQRKCVII 195
P ++ R+CV++
Sbjct: 181 -PEPKKSRRCVLL 192
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 266 bits (679), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 122/194 (62%), Positives = 152/194 (78%), Gaps = 1/194 (0%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61
S + IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DT
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKID 121
AGQEDYDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+ID
Sbjct: 62 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
LR+D T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L
Sbjct: 122 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 181
Query: 182 PEPVKRRQRKCVII 195
P P ++ R+CV++
Sbjct: 182 P-PEPKKSRRCVLL 194
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 265 bits (678), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 121/189 (64%), Positives = 150/189 (79%), Gaps = 1/189 (0%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L P P
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP-PEP 182
Query: 187 RRQRKCVII 195
++ R+CV++
Sbjct: 183 KKSRRCVLL 191
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 265 bits (676), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 121/188 (64%), Positives = 149/188 (79%), Gaps = 1/188 (0%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L P P
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP-PEP 182
Query: 187 RRQRKCVI 194
++ R+CV+
Sbjct: 183 KKSRRCVL 190
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 264 bits (674), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 121/187 (64%), Positives = 148/187 (79%), Gaps = 1/187 (0%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L P P
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP-PEP 182
Query: 187 RRQRKCV 193
++ R+CV
Sbjct: 183 KKSRRCV 189
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 263 bits (673), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 122/190 (64%), Positives = 150/190 (78%), Gaps = 1/190 (0%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
+S+ + IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+D
Sbjct: 5 ISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 64
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDYDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+I
Sbjct: 65 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 124
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLR+D T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L
Sbjct: 125 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184
Query: 181 R-PEPVKRRQ 189
PEP K R+
Sbjct: 185 EPPEPKKSRR 194
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 263 bits (671), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 121/191 (63%), Positives = 149/191 (78%), Gaps = 1/191 (0%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61
S + IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DT
Sbjct: 1 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 60
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKID 121
AGQEDYDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+ID
Sbjct: 61 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 120
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
LR+D T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L
Sbjct: 121 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 180
Query: 182 PEPVKRRQRKC 192
P P ++ R+C
Sbjct: 181 P-PEPKKSRRC 190
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 262 bits (670), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 120/189 (63%), Positives = 149/189 (78%), Gaps = 1/189 (0%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DTAG ED
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDLR+D
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 127
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L P P
Sbjct: 128 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP-PEP 186
Query: 187 RRQRKCVII 195
++ R+CV++
Sbjct: 187 KKSRRCVLL 195
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 262 bits (670), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 120/189 (63%), Positives = 149/189 (78%), Gaps = 1/189 (0%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGD VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DTAGQED
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186
T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L P P
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP-PEP 182
Query: 187 RRQRKCVII 195
++ R+CV++
Sbjct: 183 KKSRRCVLL 191
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 261 bits (668), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 121/184 (65%), Positives = 146/184 (79%), Gaps = 1/184 (0%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR-PEPV 185
T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L PEP
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPK 183
Query: 186 KRRQ 189
K R+
Sbjct: 184 KSRR 187
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 261 bits (668), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 122/189 (64%), Positives = 148/189 (78%), Gaps = 1/189 (0%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61
S + IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DT
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKID 121
AGQEDYDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+ID
Sbjct: 62 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
LR+D T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L
Sbjct: 122 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 181
Query: 182 -PEPVKRRQ 189
PEP K R+
Sbjct: 182 PPEPKKSRR 190
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 260 bits (665), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 123/190 (64%), Positives = 149/190 (78%), Gaps = 2/190 (1%)
Query: 2 SSG-RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
SSG + IKCVVVGDG VGK C+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+D
Sbjct: 5 SSGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 64
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDYDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+I
Sbjct: 65 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 124
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLR+D T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L
Sbjct: 125 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184
Query: 181 R-PEPVKRRQ 189
PEP K R+
Sbjct: 185 EPPEPKKSRR 194
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 258 bits (660), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 117/176 (66%), Positives = 141/176 (80%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DTAGQED
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDLR+D
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 133
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L P
Sbjct: 134 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP 189
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 258 bits (660), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 117/176 (66%), Positives = 141/176 (80%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L P
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP 179
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 257 bits (656), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 117/175 (66%), Positives = 140/175 (80%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T+ L++ P+ E +KLA ++AVKY+ECSALTQRGL+ VFDEA+ A L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALE 178
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 256 bits (655), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 117/179 (65%), Positives = 142/179 (79%)
Query: 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTA 62
S + IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DTA
Sbjct: 2 SMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 61
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDL 122
GQEDYDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDL
Sbjct: 62 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 121
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R+D T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L
Sbjct: 122 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 180
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 256 bits (655), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 117/174 (67%), Positives = 140/174 (80%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
T+ L++ P+ E +KLA ++AVKY+ECSALTQRGL+ VFDEA+ A L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 256 bits (654), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 116/175 (66%), Positives = 140/175 (80%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 256 bits (654), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 119/181 (65%), Positives = 143/181 (79%), Gaps = 1/181 (0%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DTAG ED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR-PEPV 185
T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L PEP
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPK 183
Query: 186 K 186
K
Sbjct: 184 K 184
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 256 bits (653), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 116/175 (66%), Positives = 140/175 (80%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL+DTAGQED
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 67
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDLR+D
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 127
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L
Sbjct: 128 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 182
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 254 bits (650), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 115/175 (65%), Positives = 139/175 (79%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT+ FP EYVP VFDNY+ + G P +LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 254 bits (649), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 116/175 (66%), Positives = 139/175 (79%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT+ FP EYVPTVFDNY+ + G P +LGL DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 254 bits (648), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 115/175 (65%), Positives = 139/175 (79%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
IKCVVVGDG VGKTC+LISYTT+ P EYVPTVFDNY+ + G P +LGL+DTAGQED
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYPQTDVFL+C+SVVSPSSF+NV KW PE+ HHCP P +LVGT+IDLR+D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T+ L++ P+ E +KLA ++AVKY+ECSALTQ+GL+ VFDEA+ A L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 239 bits (610), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 112/176 (63%), Positives = 139/176 (78%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
+KCVVVGDG VGKTC+L+SY D+FP EYVPTVFD+Y+ TV G LGL+DTAGQED
Sbjct: 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
YDRLRPLSYP TDVFLIC+SVV+P+SF NV +W PELK + P+ P +L+GT+IDLR+D
Sbjct: 79 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 138
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
+TL L++ P+ EQGQKLA +I A Y+ECSALTQ+GL+ VFDEA+ A+L P
Sbjct: 139 KTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 229 bits (584), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 105/182 (57%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
MS+ R IKCV VGDG VGKTCMLISYT ++FP +YVPTVFDN+SA VDG V+LGLWD
Sbjct: 1 MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDY+RLRPLSY DVFL+ +S++S +S++N+ KW PELKH+ P PI+LVGTK+
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLR+D++ L + + QG++L I AV+Y+ECS+ TQ+ ++ VFD A+R L
Sbjct: 121 DLRDDKQFLK--DHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVAL 178
Query: 181 RP 182
RP
Sbjct: 179 RP 180
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 223 bits (567), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 106/188 (56%), Positives = 133/188 (70%), Gaps = 1/188 (0%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGDG GKTC+LI ++ D FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVKR 187
T L++ PVK E+G+ +AN+I A YMECSA T+ G+R+VF+ A RA L+ K+
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKK 186
Query: 188 RQRKCVII 195
+ C+I+
Sbjct: 187 KS-GCLIL 193
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 222 bits (566), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 102/182 (56%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
MS+ R IKCV VGDG VGKTCMLISYT+++FP +YVPTVFDN+SA VDG V+LGLWD
Sbjct: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDY+RLRPLSY DVF++ +S++S +S++NV KW PEL+H+ P PIILVGTK+
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLR+D++ + P+ QG++L I + Y+ECS+ TQ+ ++ VFD A++ VL
Sbjct: 121 DLRDDKQF--FIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178
Query: 181 RP 182
+P
Sbjct: 179 QP 180
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 222 bits (566), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 107/188 (56%), Positives = 133/188 (70%), Gaps = 1/188 (0%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGDG GKTC+LI + D FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR+D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVKR 187
T L++ PV+ E+G+ +AN+I A Y+ECSA T+ G+R+VF+ A RA L+ KR
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVRKNKR 186
Query: 188 RQRKCVII 195
R R C I+
Sbjct: 187 R-RGCPIL 193
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/181 (57%), Positives = 129/181 (71%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGDG GKTC+LI ++ D FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR D
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVKR 187
T L++ PVK E+G+ +AN+I A YMECSA T+ G+R+VF+ A RA L+ K+
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKK 188
Query: 188 R 188
+
Sbjct: 189 K 189
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 105/188 (55%), Positives = 133/188 (70%), Gaps = 1/188 (0%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGDG GKTC+LI ++ D FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR D
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVKR 187
T L++ PVK E+G+ +AN+I A YMECSA T+ G+R+VF+ A RA L+ K+
Sbjct: 130 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKK 189
Query: 188 RQRKCVII 195
+ C+++
Sbjct: 190 KS-GCLVL 196
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 105/188 (55%), Positives = 133/188 (70%), Gaps = 1/188 (0%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGDG GKTC+LI ++ D FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR D
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVKR 187
T L++ PVK E+G+ +AN+I A YMECSA T+ G+R+VF+ A RA L+ K+
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKK 188
Query: 188 RQRKCVII 195
+ C+++
Sbjct: 189 KS-GCLVL 195
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 101/182 (55%), Positives = 137/182 (75%), Gaps = 2/182 (1%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
MS+ R IKCV VGDG VGKTC+LISYT+++FP +YVPTVFDN+SA V+G V+LGLWD
Sbjct: 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDY+RLRPLSY DVF++ +S++S +S++NV+ KW PELKH+ P PI+LVGTK+
Sbjct: 63 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLR+D++ + P+ QG++L I A Y+ECS+ +Q ++ VFD A+R VL
Sbjct: 123 DLRDDKQF--FIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180
Query: 181 RP 182
+P
Sbjct: 181 QP 182
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 221 bits (562), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 103/174 (59%), Positives = 126/174 (72%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGDG GKTC+LI ++ D FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR D
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 127
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T L++ PVK E+G+ +AN+I A YMECSA T+ G+R+VF+ A RA L+
Sbjct: 128 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 221 bits (562), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 103/174 (59%), Positives = 126/174 (72%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGDG GKTC+LI ++ D FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR D
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T L++ PVK E+G+ +AN+I A YMECSA T+ G+R+VF+ A RA L+
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 221 bits (562), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 103/174 (59%), Positives = 126/174 (72%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGDG GKTC+LI ++ D FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 70
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR D
Sbjct: 71 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 130
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T L++ PVK E+G+ +AN+I A YMECSA T+ G+R+VF+ A RA L+
Sbjct: 131 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 220 bits (561), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 101/172 (58%), Positives = 132/172 (76%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
+KCV+VGDG VGKT +++SYTT+ +P EY+PT FDN+SA +VDG PV L L DTAGQ++
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126
+D+LRPL Y TD+FL+C+SVVSPSSF NV+ KW PE++ HCP APIILVGT+ DLRED
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDV 140
Query: 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178
+ L L + PV E + LA +I+A Y+ECSALTQ+ L++VFD A+ A
Sbjct: 141 KVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVA 192
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 220 bits (560), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 105/188 (55%), Positives = 132/188 (70%), Gaps = 1/188 (0%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGDG GKTC+LI + D FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVKR 187
T L++ PVK E+G+ +AN+I A YMECSA T+ G+R+VF+ A RA L+ K+
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKK 186
Query: 188 RQRKCVII 195
+ C+++
Sbjct: 187 KS-GCLVL 193
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 220 bits (560), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 104/181 (57%), Positives = 128/181 (70%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGDG GKTC+LI + D FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVKR 187
T L++ PVK E+G+ +AN+I A YMECSA T+ G+R+VF+ A RA L+ K+
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKK 186
Query: 188 R 188
+
Sbjct: 187 K 187
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 219 bits (559), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 101/174 (58%), Positives = 127/174 (72%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGDG GKTC+LI ++ D FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR+D
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T L++ PV+ E+G+ +AN+I A Y+ECSA T+ G+R+VF+ A RA L+
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 219 bits (557), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 103/174 (59%), Positives = 125/174 (71%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGDG GKTC+LI + D FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T L++ PVK E+G+ +AN+I A YMECSA T+ G+R+VF+ A RA L+
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 219 bits (557), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 103/174 (59%), Positives = 125/174 (71%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGDG GKTC+LI + D FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR D
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T L++ PVK E+G+ +AN+I A YMECSA T+ G+R+VF+ A RA L+
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 218 bits (556), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 103/173 (59%), Positives = 124/173 (71%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGDG GKTC+LI + D FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR D
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
T L++ PVK E+G+ +AN+I A YMECSA T+ G+R+VF+ A RA L
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 217 bits (553), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 102/174 (58%), Positives = 125/174 (71%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGD GKTC+LI ++ D FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR D
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 127
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T L++ PVK E+G+ +AN+I A YMECSA T+ G+R+VF+ A RA L+
Sbjct: 128 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 217 bits (553), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 105/182 (57%), Positives = 128/182 (70%), Gaps = 2/182 (1%)
Query: 2 SSGRPI--KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLW 59
+ G PI K V+VGDG GKTC+LI + D FP YVPTVF+NY A VDG V L LW
Sbjct: 2 AMGSPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALW 61
Query: 60 DTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTK 119
DTAG EDYDRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K
Sbjct: 62 DTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 121
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
DLR D T L++ PVK E+G+ +AN+I A YMECSA T+ G+R+VF+ A RA
Sbjct: 122 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 181
Query: 180 LR 181
L+
Sbjct: 182 LQ 183
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 216 bits (549), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 126/174 (72%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGDG GKTC+LI ++ D FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLRPLSYP TDV L+C+S+ SP S +N+ KW PE+KH P+ PIILVG K DLR+D
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEH 146
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T L++ PV+ E+G+ +AN+I A Y+ECSA T+ G+R+VF+ A RA L+
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 214 bits (546), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 123/174 (70%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGD GKTC+LI ++ D FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DR RPLSYP TDV L+C+S+ SP S +N+ KW PE+KH CP+ PIILVG K DLR D
Sbjct: 67 DRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
T L++ PVK +G+ +AN+I A YMECSA T+ G+R+VF+ A RA L+
Sbjct: 127 TARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 212 bits (539), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 122/174 (70%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VVVGDG GKTC+LI ++ D FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLRPLSYP TDV L+C+SV SP S +N+ KW PE+KH CP+ PIILV K DLR D
Sbjct: 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
L+ PV+ + G+ +A +I+A Y+ECSA T+ G+R+VF+ A RA L+
Sbjct: 147 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 212 bits (539), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/194 (51%), Positives = 139/194 (71%), Gaps = 7/194 (3%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
MS + IKCV VGDG VGKTCMLI YT++ FP +Y+PTVFDN+SA VDG V+LGLWD
Sbjct: 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
TAGQEDY RLRPLSY D+F++ +S++S +S++NV KW PEL+ P+ PI+LVGTK+
Sbjct: 64 TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DLR+D+ L + + + QG++L +I A Y+ECS+ TQ+ ++ VFD A++ VL
Sbjct: 124 DLRDDKGYL----ADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179
Query: 181 RP---EPVKRRQRK 191
+P + V RR++
Sbjct: 180 QPPRRKEVPRRRKN 193
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 198 bits (503), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 95/173 (54%), Positives = 118/173 (68%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGDG GKTC+LI + FP YVPTVF+NY A VDG V L LWDTAGQEDY
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
DRLRPLSYP ++V LIC+S+ P S +NV KW E+ H C PIILVG K+DLR D +
Sbjct: 72 DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQ 131
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
T+ L ++ PV ++GQ +A++I A Y ECSA T G+R+VF+ A RA L
Sbjct: 132 TIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASL 184
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 191 bits (484), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 112/176 (63%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R +K V+VGDG GKT +L+ + +FP Y PTVF+ Y V G PV L +WDTAGQ
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
+DYDRLRPL YP V L+C+ V SP+SFDN+ ++WYPE+ H C PII+VG K DLR+
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
D+ +N L L PV +GQ++A + AV Y+ECSA + VF EA L
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 170 bits (430), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 117/181 (64%), Gaps = 10/181 (5%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ +K VVVGDG VGKTC+L++++ P YVPTVF+N+S L LWDTAGQ
Sbjct: 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
E+YDRLRPLSY +DV L+C++V + +SFDN+++KW PE+KH+ A +LVG K+DLR+
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
D V +++G L K+ V Y+E S++ + GL +VF+++V + +P
Sbjct: 142 DGS----------DDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKP 191
Query: 185 V 185
V
Sbjct: 192 V 192
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 166 bits (421), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 114/176 (64%), Gaps = 10/176 (5%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ +K VVVGDG VGKTC+L++++ P YVPTVF+N+S L LWDTAGQ
Sbjct: 21 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 80
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
E+YDRLRPLSY +DV L+C++V + +SFDN+++KW PE+KH+ A +LVG K+DLR+
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 140
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
D V +++G L K+ V Y+E S++ + GL +VF+++V +
Sbjct: 141 DGS----------DDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 111/184 (60%), Gaps = 3/184 (1%)
Query: 1 MSSGRPIKC--VVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGL 58
M + +KC VVVGD GKT +L + D FP YVPTVF+NY+A F +D + L L
Sbjct: 16 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 75
Query: 59 WDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGT 118
WDT+G YD +RPLSYP +D LIC+ + P + D+V KW E++ CP+ ++LVG
Sbjct: 76 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 135
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL-TQRGLRQVFDEAVR 177
K DLR D TL LS +PV +QG +A +I A Y+ECSAL ++ +R +F A
Sbjct: 136 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 195
Query: 178 AVLR 181
A +
Sbjct: 196 ACVN 199
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 111/182 (60%), Gaps = 3/182 (1%)
Query: 3 SGRPIKC--VVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
S + +KC VVVGD GKT +L + D FP YVPTVF+NY+A F +D + L LWD
Sbjct: 2 SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 61
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120
T+G YD +RPLSYP +D LIC+ + P + D+V KW E++ CP+ ++LVG K
Sbjct: 62 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 121
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL-TQRGLRQVFDEAVRAV 179
DLR D TL LS +PV +QG +A +I A Y+ECSAL ++ +R +F A A
Sbjct: 122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 181
Query: 180 LR 181
+
Sbjct: 182 VN 183
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 164 bits (415), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 111/184 (60%), Gaps = 3/184 (1%)
Query: 1 MSSGRPIKC--VVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGL 58
M + +KC VVVGD GKT +L + D FP YVPTVF+NY+A F +D + L L
Sbjct: 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 80
Query: 59 WDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGT 118
WDT+G YD +RPLSYP +D LIC+ + P + D+V KW E++ CP+ ++LVG
Sbjct: 81 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 140
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL-TQRGLRQVFDEAVR 177
K DLR D TL LS +PV +QG +A +I A Y+ECSAL ++ +R +F A
Sbjct: 141 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 200
Query: 178 AVLR 181
A +
Sbjct: 201 ACVN 204
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 140 bits (353), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 104/183 (56%), Gaps = 2/183 (1%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGD GKT ML D +P YVPTVF+NY+A + V L LWDT+G Y
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
D +RPL Y +D L+C+ + P + D+ KW E+ +CP ++L+G K DLR D
Sbjct: 72 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 131
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT-QRGLRQVFDEAVRAVL-RPEPV 185
TL LS Q +P+ EQG +A ++ A Y+E SA T ++ + +F A L +P P+
Sbjct: 132 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPSPL 191
Query: 186 KRR 188
++
Sbjct: 192 PQK 194
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 140 bits (353), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 104/183 (56%), Gaps = 2/183 (1%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGD GKT ML D +P YVPTVF+NY+A + V L LWDT+G Y
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
D +RPL Y +D L+C+ + P + D+ KW E+ +CP ++L+G K DLR D
Sbjct: 73 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 132
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT-QRGLRQVFDEAVRAVL-RPEPV 185
TL LS Q +P+ EQG +A ++ A Y+E SA T ++ + +F A L +P P+
Sbjct: 133 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPSPL 192
Query: 186 KRR 188
++
Sbjct: 193 PQK 195
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 140 bits (353), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 104/183 (56%), Gaps = 2/183 (1%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K V+VGD GKT ML D +P YVPTVF+NY+A + V L LWDT+G Y
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127
D +RPL Y +D L+C+ + P + D+ KW E+ +CP ++L+G K DLR D
Sbjct: 89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 148
Query: 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT-QRGLRQVFDEAVRAVL-RPEPV 185
TL LS Q +P+ EQG +A ++ A Y+E SA T ++ + +F A L +P P+
Sbjct: 149 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPSPL 208
Query: 186 KRR 188
++
Sbjct: 209 PQK 211
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 97/190 (51%), Gaps = 23/190 (12%)
Query: 6 PIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAG 63
K ++VGD VGKTC+L+ + +F G ++ TV D + VDG+ V L +WDTAG
Sbjct: 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCP-DAPIILVGTKIDL 122
QE + + Y L+ Y V + +SFDN+ + W E+ + D ++L+G K+D
Sbjct: 70 QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQA-WLTEIHEYAQHDVALMLLGNKVDS 128
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
+R VKRE G+KLA K + +ME SA T GL D A A+
Sbjct: 129 AHER------------VVKREDGEKLA-KEYGLPFMETSAKT--GLN--VDLAFTAI--A 169
Query: 183 EPVKRRQRKC 192
+ +KRR K
Sbjct: 170 KELKRRSMKA 179
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 13/178 (7%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R K VV+G G VGK+ + + + F +Y PT+ D+Y VD L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLR 123
E + +R L F + YS+ + S+F+++ L+ D P+ILVG K DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLE 121
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
++R V +EQGQ LA + ++E SA ++ + ++F + VR + R
Sbjct: 122 DER------------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 13/178 (7%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R K VV+G G VGK+ + + + F EY PT+ D+Y VD L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLR 123
E + +R L F + YS+ + S+F+++ L+ D P+ILVG K DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
++R V +EQGQ LA + ++E SA ++ + ++F + VR + R
Sbjct: 122 DER------------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 13/178 (7%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R K VV+G G VGK+ + + + F +Y PT+ D+Y VD L + DTAG
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLR 123
E + +R L F + YS+ + S+F+++ L+ D P+ILVG K DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
++R V +EQGQ LA + ++E SA ++ + ++F + VR + R
Sbjct: 122 DER------------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 13/181 (7%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61
S R K VV+G VGK+ + + + F +Y PT+ D+Y VD L + DT
Sbjct: 1 GSMREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDT 60
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKI 120
AG E + +R L F + YS+ + S+F+++ L+ D P+ILVG K
Sbjct: 61 AGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKC 120
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DL ++R V +EQGQ LA + ++E SA ++ + ++F + VR +
Sbjct: 121 DLEDER------------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQIN 168
Query: 181 R 181
R
Sbjct: 169 R 169
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 18/178 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP-FTVDGIPVSLGLWDTAGQE 65
+K +++G+ VGK+ +L+ +T D+F E T+ ++ +VDG L +WDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPII--LVGTKIDLR 123
+ L P Y ++ Y V +F + W EL+ +C I+ LVG KID +
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNXLVGNKID-K 133
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
E+RE V R +G K A K + ++E SA T G++ F+E V +++
Sbjct: 134 ENRE------------VDRNEGLKFARK-HSXLFIEASAKTCDGVQCAFEELVEKIIQ 178
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +++GD VGKTC+L ++ D+F ++ T+ D +DG + L +WDTAGQE
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ + Y ++ Y + + SFDN+ + W ++ H D +++G K D+ +
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHASADVEKMILGNKCDVND 125
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
R+ V +E+G+KLA +K+ME SA + F
Sbjct: 126 KRQ------------VSKERGEKLALDY-GIKFMETSAKANINVENAF 160
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +++GD VGKTC+L ++ D+F ++ T+ D +DG + L +WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ + Y ++ Y + + SFDN+ + W ++ H D +++G K D+ +
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHASADVEKMILGNKCDVND 127
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
R+ V +E+G+KLA +K+ME SA + F
Sbjct: 128 KRQ------------VSKERGEKLALDY-GIKFMETSAKANINVENAF 162
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 13/168 (7%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
IK V++G+ VGK+ +++ + ++ F PT+ + + T++ V +WDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCP-DAPIILVGTKIDLRE 124
+ L P Y L+ Y V P SF W EL D I LVG KID
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIK-ARHWVKELHEQASKDIIIALVGNKID--- 119
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
L E V RE+G+KLA + + + + E SA T + VF
Sbjct: 120 ------XLQEGGERKVAREEGEKLAEE-KGLLFFETSAKTGENVNDVF 160
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 15/179 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+ +L+ + ++F G Y+ T+ ++ ++G V L +WDTAGQE
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ + Y T ++ Y V S SF NV +W E+ +C D ILVG K D E
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPER 128
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
+ V+ E K A ++ ++ E SA + ++F+ VLR +
Sbjct: 129 K------------VVETEDAYKFAGQM-GIQLFETSAKENVNVEEMFNCITELVLRAKK 174
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 24/179 (13%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGI-----PVSLGLWDT 61
K +++G+ +VGKT L Y D+F +V TV F V + V L +WDT
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV----GIDFKVKTVYRHEKRVKLQIWDT 79
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKI 120
AGQE Y + Y F++ Y + + SF N W ++K + D A +ILVG K
Sbjct: 80 AGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKC 138
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
D+ E+R V E+GQ LA ++ + E SA +RQ F+ V A+
Sbjct: 139 DMEEER------------VVPTEKGQLLAEQL-GFDFFEASAKENISVRQAFERLVDAI 184
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 93/187 (49%), Gaps = 22/187 (11%)
Query: 1 MSSG------RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIP 53
MSSG R K V +G+ +VGKT ++ + DSF Y T+ D S ++
Sbjct: 3 MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 62
Query: 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAP 112
V L LWDTAGQE + L P + V ++ Y + + +SF + TSKW +++ D
Sbjct: 63 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSF-HQTSKWIDDVRTERGSDVI 121
Query: 113 IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
I+LVG K DL + R+ V E+G++ A ++ V ++E SA ++Q+F
Sbjct: 122 IMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 168
Query: 173 DEAVRAV 179
A+
Sbjct: 169 RRVAAAL 175
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQ 64
K V +G+ +VGKT ++ + DSF Y T+ D S ++ V L LWDTAGQ
Sbjct: 2 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 61
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLR 123
E + L P + V ++ Y + + +SF TSKW +++ D I+LVG K DL
Sbjct: 62 ERFRSLIPSYIRDSTVAVVVYDITNLNSFQQ-TSKWIDDVRTERGSDVIIMLVGNKTDLA 120
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
+ R+ + E+G++ A ++ +V ++E SA T ++Q+F A+L
Sbjct: 121 DKRQ------------ITIEEGEQRAKEL-SVMFIETSAKTGYNVKQLFRRVASALL 164
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 88/183 (48%), Gaps = 20/183 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
K +++GDG VGK+ ++ Y T+ F + T+ + + VDG V++ +WDTAGQE
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC----PDA-PIILVGTKI 120
+ LR Y +D L+ +SV SF N+ S W E ++ P++ P +++G KI
Sbjct: 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
D+ E + V E+ Q Y E SA + F+EAVR VL
Sbjct: 127 DISERQ-------------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
Query: 181 RPE 183
E
Sbjct: 174 ATE 176
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 20/184 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
+K +++GDG VGK+ ++ Y T+ F + T+ + + VDG V+L +WDTAGQE
Sbjct: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-----PDAPIILVGTKI 120
+ LR Y D L+ +SV SF+N+ W E ++ P +++G K+
Sbjct: 68 RFKSLRTPFYRGADCCLLTFSVDDRQSFENL-GNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
D +EDR+ V E+ Q + Y+E SA + F+EAVR VL
Sbjct: 127 D-KEDRQ------------VTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173
Query: 181 RPEP 184
E
Sbjct: 174 AVEE 177
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPF-TVDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L+ +T F + T+ + A T+DG + L +WDTAGQE
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ + Y L+ Y + +F+++T+ W + + H + I+L+G K DL
Sbjct: 71 SFRSITRSYYRGAAGALLVYDITRRDTFNHLTT-WLEDARQHSNSNMVIMLIGNKSDLES 129
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
RE VK+E+G+ A + + +ME SA T + + F
Sbjct: 130 RRE------------VKKEEGEAFARE-HGLIFMETSAKTASNVEEAF 164
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 14/177 (7%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPF-TVDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L+ +T F + T+ + A +DG + L +WDTAGQE
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ + Y L+ Y + +F+++TS +H + I+L+G K DL
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
R+ VKRE+G+ A + + +ME SA T + + F + + R
Sbjct: 142 RD------------VKREEGEAFARE-HGLIFMETSAKTACNVEEAFINTAKEIYRK 185
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 20/180 (11%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
K +++GDG VGK+ ++ Y T+ F + T+ + + VDG V++ +WDTAGQE
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC----PDA-PIILVGTKI 120
+ LR Y +D L+ +SV SF N+ S W E ++ P++ P +++G KI
Sbjct: 70 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
D+ E + V E+ Q Y E SA + F+EAVR VL
Sbjct: 129 DISERQ-------------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 17/175 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K ++VG G VGK+ + + + D F +Y PT D+Y +DG V + + DTAG EDY
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL---KHHCPDAPIILVGTKIDLRE 124
+R + + FL+ +S+ SF T+++ ++ K P+++VG K DL E
Sbjct: 65 AAIRDNYFRSGEGFLLVFSITEHESF-TATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
R+ PV E+ + A + V+Y+E SA T+ + +VF + +R +
Sbjct: 124 RRQV----------PV--EEARSKAEEW-GVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 22/187 (11%)
Query: 2 SSGRP--IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGL 58
S+G+ K +++GDG VGK+ ++ Y T+ F + T+ + + VDG V++ +
Sbjct: 5 SAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQI 64
Query: 59 WDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC----PDA-PI 113
WDTAGQE + LR Y +D L+ +SV SF N+ S W E ++ P++ P
Sbjct: 65 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPF 123
Query: 114 ILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173
+++G K D++E + V E+ Q Y E SA + F+
Sbjct: 124 VILGNKTDIKERQ-------------VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFE 170
Query: 174 EAVRAVL 180
EAVR +L
Sbjct: 171 EAVRRIL 177
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 17/175 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K ++VG G VGK+ + + + D F +Y PT D+Y +DG V + + DTAG EDY
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL---KHHCPDAPIILVGTKIDLRE 124
+R + + FL+ +S+ SF T+++ ++ K P+++VG K DL E
Sbjct: 69 AAIRDNYFRSGEGFLLVFSITEHESF-TATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
R+ PV E+ + A + V+Y+E SA T+ + +VF + +R +
Sbjct: 128 RRQV----------PV--EEARSKAEEW-GVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 17/180 (9%)
Query: 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVD--GIPVSLGLWDTAG 63
++ +++G VGKT ++ +T D+F TV ++ TV+ G + L +WDTAG
Sbjct: 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIK-TVELRGKKIRLQIWDTAG 84
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL-KHHCPDAPIILVGTKIDL 122
QE ++ + Y ++ Y + +FD++ KW + K+ DA ++LVG K+D
Sbjct: 85 QERFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
DRE + R+QG+K A +I +++ E SA + ++F + V +L+
Sbjct: 144 ETDRE------------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 21/190 (11%)
Query: 1 MSSGRP--IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVS-L 56
MSS + +K +++GD VGKT ++ Y D + +Y T+ ++ + TVDG V+ +
Sbjct: 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 57 GLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC----PDA- 111
+WDTAGQE + L Y D ++ Y V + SSF+N+ S W E H P+
Sbjct: 61 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETF 119
Query: 112 PIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQV 171
P +++G KID E ++ V + Q+LA + + SA +
Sbjct: 120 PFVILGNKIDAEESKKI-----------VSEKSAQELAKSLGDIPLFLTSAKNAINVDTA 168
Query: 172 FDEAVRAVLR 181
F+E R+ L+
Sbjct: 169 FEEIARSALQ 178
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 16/174 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K ++VG G VGK+ + + + D F +Y PT D+Y +DG V + + DTAGQEDY
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD--APIILVGTKIDLRED 125
+R + + FL +S+ SF T+ + ++ D P +LVG K DL +
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESF-AATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
R+ V E+ + A++ V Y+E SA T+ + +VF + +R +
Sbjct: 125 RQ------------VSVEEAKNRADQWN-VNYVETSAKTRANVDKVFFDLMREI 165
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 94/192 (48%), Gaps = 16/192 (8%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAG 63
R K V +G+ +VGKT ++ + DSF Y T+ D S ++ V L LWDTAG
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 64
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDL 122
E + L P + V ++ Y + + +SF T+KW +++ D I+LVG K DL
Sbjct: 65 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
+ R+ V E+G++ A ++ V ++E SA ++Q+F A+
Sbjct: 124 ADKRQ------------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALPGM 170
Query: 183 EPVKRRQRKCVI 194
E + R R+ +I
Sbjct: 171 ESTQDRSREDMI 182
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 16/174 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K ++VG G VGK+ + + + D F +Y PT D+Y +DG V + + DTAGQEDY
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD--APIILVGTKIDLRED 125
+R + + FL +S+ SF T+ + ++ D P +LVG K DL +
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESF-AATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
R+ V E+ + A + V Y+E SA T+ + +VF + +R +
Sbjct: 139 RQ------------VSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 16/174 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K ++VG G VGK+ + + + D F +Y PT D+Y +DG V + + DTAGQEDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD--APIILVGTKIDLRED 125
+R + + FL +S+ SF T+ + ++ D P +LVG K DL +
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESF-AATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
R+ V E+ + A + V Y+E SA T+ + +VF + +R +
Sbjct: 127 RQ------------VSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 16/174 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K ++VG G VGK+ + + + D F +Y PT D+Y +DG V + + DTAGQEDY
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD--APIILVGTKIDLRED 125
+R + + FL +S+ SF T+ + ++ D P +LVG K DL +
Sbjct: 76 AAIRDNYFRSGEGFLCVFSITEMESF-AATADFREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
R+ V E+ + A + V Y+E SA T+ + +VF + +R +
Sbjct: 135 RQ------------VSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFDLMREI 175
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 24/179 (13%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGI-----PVSLGLWDT 61
K +++G+ +VGKT L Y DSF +V TV F V I + L +WDT
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV----GIDFKVKTIYRNDKRIKLQIWDT 61
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKI 120
AGQE Y + Y F++ Y + + SF N W ++K + D A ++LVG K
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
D+ ++R V E+G++LA+ + ++ E SA ++Q F+ V +
Sbjct: 121 DMEDER------------VVSSERGRQLADHL-GFEFFEASAKDNINVKQTFERLVDVI 166
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VVVG VGK+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLRED 125
+R + FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL--- 120
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 121 ----------AARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VVVG VGK+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLRED 125
+R + FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL--- 120
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 121 ----------AARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 2 SSGRP---IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLG 57
+ G P K V+VGDG GKT + + T F +YVPT+ + + F + P+
Sbjct: 3 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFN 62
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVG 117
+WDTAGQE + LR Y Q +I + V S ++ NV + W+ +L C + PI+L G
Sbjct: 63 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCG 121
Query: 118 TKIDLREDR 126
K+D+++ +
Sbjct: 122 NKVDIKDRK 130
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 94/192 (48%), Gaps = 16/192 (8%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAG 63
R K V +G+ +VGKT ++ + DSF Y T+ D S ++ V L LWDTAG
Sbjct: 15 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDL 122
E + L P + V ++ Y + + +SF T+KW +++ D I+LVG K DL
Sbjct: 75 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVIIMLVGNKTDL 133
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
+ R+ V E+G++ A ++ V ++E SA ++Q+F A+
Sbjct: 134 ADKRQ------------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALPGM 180
Query: 183 EPVKRRQRKCVI 194
E + R R+ +I
Sbjct: 181 ESTQDRSREDMI 192
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VVVG VGK+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLRED 125
+R + FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL--- 120
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 121 ----------AARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 2 SSGRP---IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLG 57
+ G P K V+VGDG GKT + + T F +YVPT+ + + F + P+
Sbjct: 3 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFN 62
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVG 117
+WDTAGQE + LR Y Q +I + V S ++ NV + W+ +L C + PI+L G
Sbjct: 63 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCG 121
Query: 118 TKIDLREDR 126
K+D+++ +
Sbjct: 122 NKVDIKDRK 130
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 17/168 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
+K +++GD VGK+C+L+ + D F ++ T+ D ++G V L LWDTAGQE
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKIDLRE 124
+ + Y ++ Y V +F N+ +W+ + H D A ++LVG K D+ E
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-E 138
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
R V +QG+ LA ++ + ++E SA + ++F
Sbjct: 139 TR------------VVTADQGEALAKEL-GIPFIESSAKNDDNVNEIF 173
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 33/200 (16%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDG--------IPVS 55
IK + +GD VGKT L YT + F +++ TV F + G V
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPI 113
L LWDTAGQE + L + FL+ + + S SF NV + W +L+ +C + I
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDI 144
Query: 114 ILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173
+L+G K DL + RE V Q ++LA+K + Y E SA T Q +
Sbjct: 145 VLIGNKADLPDQRE------------VNERQARELADKY-GIPYFETSAATG----QNVE 187
Query: 174 EAVRAVLRPEPVKRRQRKCV 193
+AV +L + + +R +CV
Sbjct: 188 KAVETLL--DLIMKRMEQCV 205
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 17/168 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
+K +++GD VGK+C+L+ + D F ++ T+ D ++G V L LWDTAGQE
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKIDLRE 124
+ + Y ++ Y V +F N+ +W+ + H D A ++LVG K D+ E
Sbjct: 68 RFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
R V +QG+ LA ++ + ++E SA + ++F
Sbjct: 126 TR------------VVTADQGEALAKEL-GIPFIESSAKNDDNVNEIF 160
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 24/179 (13%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGI-----PVSLGLWDT 61
K +++G+ +VGKT L Y DSF +V TV F V + + L +WDT
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV----GIDFKVKTVYRHDKRIKLQIWDT 78
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKI 120
AGQE Y + Y FL+ Y + + SF V W ++K + D A +ILVG K
Sbjct: 79 AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKC 137
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
DL ++R V E G++LA+ + ++ E SA ++QVF+ V +
Sbjct: 138 DLEDER------------VVPAEDGRRLADDL-GFEFFEASAKENINVKQVFERLVDVI 183
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VVVG VGK+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLRED 125
+R + FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAG- 122
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 123 ------------RTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 17/167 (10%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K +++GD VGK+C+L+ + D F ++ T+ D ++G V L LWDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKIDLRED 125
+ + Y ++ Y V +F N+ +W+ + H D A ++LVG K D
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNK----SD 119
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
ET V +QG+ LA ++ + ++E SA + ++F
Sbjct: 120 XET---------RVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIF 156
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 16/176 (9%)
Query: 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQ 64
K V +G+ +VGKT ++ + DSF Y T+ D S ++ V L LWDTAGQ
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLR 123
E + L P + V ++ Y + + +SF T+KW +++ D I+LVG K DL
Sbjct: 61 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVIIMLVGNKTDLA 119
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
+ R+ V E+G++ A ++ V ++E SA ++Q+F A+
Sbjct: 120 DKRQ------------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 16/173 (9%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWD 60
S K V++G+G VGKT +++ Y + F +++ T+ ++ + + G V+L +WD
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTK 119
TAGQE + L P+ Y ++ ++ Y + SF V + W EL+ + + +VG K
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICLCIVGNK 120
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
IDL ++R V ++ + A + A K+ SA +G+ ++F
Sbjct: 121 IDLEKERH------------VSIQEAESYAESVGA-KHYHTSAKQNKGIEELF 160
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L+ + D++ Y+ T+ ++ +++ V L +WDTAGQE
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL-KHHCPDAPIILVGTKIDLRE 124
+ + Y +I Y V SFDNV +W E+ ++ + +LVG K DL
Sbjct: 70 RFRTITSSYYRGAHGIIIVYDVTDRDSFDNV-KQWIQEIDRYAMENVNKLLVGNKCDLVS 128
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
R V ++G++LA+ +K++E SA + Q F
Sbjct: 129 KR------------VVTSDEGRELADS-HGIKFIETSAKNAYNVEQAF 163
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 16/173 (9%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWD 60
S K V++G+G VGKT +++ Y + F +++ T+ ++ + + G V+L +WD
Sbjct: 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWD 61
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTK 119
TAGQE + L P+ Y ++ ++ Y + SF V + W EL+ + + +VG K
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICLCIVGNK 120
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
IDL ++R V ++ + A + A K+ SA +G+ ++F
Sbjct: 121 IDLEKERH------------VSIQEAESYAESVGA-KHYHTSAKQNKGIEELF 160
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 14/162 (8%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F +Y PT+ D+Y+ +D L + DTAGQE++ +R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA-PIILVGTKIDLREDRETLNLLSEQNL 137
+ FL+ +SV SF+ + L+ D P+IL+G K DL R+
Sbjct: 78 EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQ---------- 127
Query: 138 SPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V +E+GQ+LA +++ V YME SA + + Q F E VR +
Sbjct: 128 --VTQEEGQQLARQLK-VTYMEASAKIRMNVDQAFHELVRVI 166
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 16/173 (9%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWD 60
S K V++G+G VGKT +++ Y + F +++ T+ ++ + + G V+L +WD
Sbjct: 16 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWD 75
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTK 119
TAGQE + L P+ Y ++ ++ Y + SF V + W EL+ + + +VG K
Sbjct: 76 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICLCIVGNK 134
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
IDL ++R V ++ + A + A K+ SA +G+ ++F
Sbjct: 135 IDLEKERH------------VSIQEAESYAESVGA-KHYHTSAKQNKGIEELF 174
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 16/177 (9%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAG 63
R K V +G+ +VGKT ++ + DSF Y T+ D S ++ + L LWDTAG
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDL 122
QE + L P + ++ Y + + +SF T+KW +++ D I+LVG K DL
Sbjct: 65 QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
+ R+ V E+G++ A ++ V ++E SA ++Q+F A+
Sbjct: 124 ADKRQ------------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 16/192 (8%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAG 63
R K V +G+ +VGKT ++ + DSF Y T+ D S ++ + L LWDTAG
Sbjct: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 71
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDL 122
E + L P + ++ Y + + +SF T+KW +++ D I+LVG K DL
Sbjct: 72 LERFRSLIPSYIRDSAAAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVIIMLVGNKTDL 130
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
+ R+ V E+G++ A ++ V ++E SA ++Q+F A+
Sbjct: 131 ADKRQ------------VSIEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALPGM 177
Query: 183 EPVKRRQRKCVI 194
E + R R+ +I
Sbjct: 178 ESTQDRSREDMI 189
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 5/129 (3%)
Query: 2 SSGRP---IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLG 57
+ G P K V+VGDG GKT + + T F +YV T+ + + F + P+
Sbjct: 3 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 62
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVG 117
+WDTAGQE Y LR Y Q +I + V S ++ NV + W+ +L C + PI+L G
Sbjct: 63 VWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCG 121
Query: 118 TKIDLREDR 126
K+D+++ +
Sbjct: 122 NKVDIKDRK 130
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 17/168 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
+K +++GD VGK+C+L+ + D F ++ T+ D ++G V L +WDTAGQE
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKIDLRE 124
+ + Y ++ Y + +F N+ +W+ + H D A ++LVG K D+ E
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-E 121
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
R V +QG+ LA ++ + ++E SA + ++F
Sbjct: 122 TR------------VVTADQGEALAKEL-GIPFIESSAKNDDNVNEIF 156
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 5/129 (3%)
Query: 2 SSGRP---IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLG 57
+ G P K V+VGDG GKT + + T F +YV T+ + + F + P+
Sbjct: 3 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 62
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVG 117
+WDTAGQE + LR Y Q +I + V S ++ NV + W+ +L C + PI+L G
Sbjct: 63 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCG 121
Query: 118 TKIDLREDR 126
K+D+++ +
Sbjct: 122 NKVDIKDRK 130
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 15/168 (8%)
Query: 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQ 64
IK VVVG+G VGK+ M+ Y F +Y T+ D V+ V L LWDTAGQ
Sbjct: 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124
E++D + Y ++ +S SF+ ++S W ++ D P LV KIDL +
Sbjct: 65 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISS-WREKVVAEVGDIPTALVQNKIDLLD 123
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
D S +K E+ + LA +++ +++ S + +VF
Sbjct: 124 D------------SCIKNEEAEGLAKRLK-LRFYRTSVKEDLNVSEVF 158
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 16/174 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K ++VG G VGK+ + + + D F +Y PT D+Y +DG V + + DTAG EDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD--APIILVGTKIDLRED 125
+R + + FL +S+ SF T+ + ++ D P +LVG K DL +
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESF-AATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
R+ V E+ + A + V Y+E SA T+ + +VF + +R +
Sbjct: 127 RQ------------VSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 17/167 (10%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K +++GD VGK+C+L+ + D F ++ T+ D ++G V L +WDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKIDLRED 125
+ + Y ++ Y + +F N+ +W+ + H D A ++LVG K D
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNK----SD 119
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
ET V +QG+ LA ++ + ++E SA + ++F
Sbjct: 120 XET---------RVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIF 156
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 90/189 (47%), Gaps = 18/189 (9%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
M+ +K + G VGK+ +++ + T F EY PT+ Y T+D VS+ + D
Sbjct: 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 82
Query: 61 TAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNV--TSKWYPELKHHCPDAPIILVGT 118
TAGQED + R + F++ Y + SF+ V E+K + +ILVG
Sbjct: 83 TAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGN 140
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRG-LRQVFDEAVR 177
K DL R+ V E+G+KLA ++ A + ECSA T G + ++F E R
Sbjct: 141 KADLDHSRQ------------VSTEEGEKLATEL-ACAFYECSACTGEGNITEIFYELCR 187
Query: 178 AVLRPEPVK 186
V R V+
Sbjct: 188 EVRRRRMVQ 196
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 16/177 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K V++GD VGK+ +L +T + F E T+ ++ VDG + +WDTAGQE
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y R+ Y L+ Y + +++NV +W EL+ H + I+LVG K DLR
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR- 123
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+L V ++ + A K + ++E SAL + + F + + R
Sbjct: 124 -----------HLRAVPTDEARAFAEK-NNLSFIETSALDSTNVEEAFKNILTEIYR 168
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 5/129 (3%)
Query: 2 SSGRP---IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLG 57
+ G P K V+VGDG GKT + + T F +YV T+ + + F + P+
Sbjct: 3 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 62
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVG 117
+WDTAGQE + LR Y Q +I + V S ++ NV + W+ +L C + PI+L G
Sbjct: 63 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCG 121
Query: 118 TKIDLREDR 126
K+D+++ +
Sbjct: 122 NKVDIKDRK 130
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 5/129 (3%)
Query: 2 SSGRP---IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLG 57
+ G P K V+VGDG GKT + + T F +YV T+ + + F + P+
Sbjct: 3 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 62
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVG 117
+WDTAGQE + LR Y Q +I + V S ++ NV + W+ +L C + PI+L G
Sbjct: 63 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCG 121
Query: 118 TKIDLREDR 126
K+D+++ +
Sbjct: 122 NKVDIKDRK 130
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V+VGDG GKT + + T F +YV T+ + + F + P+ +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ LR Y Q +I + V S ++ NV + W+ +L C + PI+L G K+D+++
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDR 122
Query: 126 R 126
+
Sbjct: 123 K 123
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 17/174 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VVVG VGK+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLRED 125
+R + FL +++ + SF+++ + ++K D P++LVG K DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDLPS- 123
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V +Q Q LA + ++E SA T++G+ F VR +
Sbjct: 124 ------------RTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 17/174 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K VVVG VGK+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLRED 125
+R + FL +++ + SF+++ + ++K D P++LVG K DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPS- 123
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V +Q Q LA + ++E SA T++G+ F VR +
Sbjct: 124 ------------RTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 5/129 (3%)
Query: 2 SSGRP---IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLG 57
+ G P K V+VGDG GKT + + T F +YV T+ + + F + P+
Sbjct: 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 67
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVG 117
+WDTAGQE + LR Y Q +I + V S ++ NV + W+ +L C + PI+L G
Sbjct: 68 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCG 126
Query: 118 TKIDLREDR 126
K+D+++ +
Sbjct: 127 NKVDIKDRK 135
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 5/129 (3%)
Query: 2 SSGRP---IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLG 57
+ G P K V+VGDG GKT + + T F +YV T+ + + F + P+
Sbjct: 3 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 62
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVG 117
+WDTAGQE + LR Y Q +I + V S ++ NV + W+ +L C + PI+L G
Sbjct: 63 VWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCG 121
Query: 118 TKIDLREDR 126
K+D+++ +
Sbjct: 122 NKVDIKDRK 130
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 33/200 (16%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTV------DG-----IPVS 55
IK + +GD VGKT L YT + F +++ TV ++ V DG V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPI 113
L LWDTAG E + L + FL+ + + S SF NV + W +L+ +C + I
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQANAYCENPDI 130
Query: 114 ILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173
+L+G K DL + RE V Q ++LA K + Y E SA T Q +
Sbjct: 131 VLIGNKADLPDQRE------------VNERQARELAEKY-GIPYFETSAATG----QNVE 173
Query: 174 EAVRAVLRPEPVKRRQRKCV 193
++V +L + + +R KCV
Sbjct: 174 KSVETLL--DLIXKRXEKCV 191
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 33/200 (16%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTV------DG-----IPVS 55
IK + +GD VGKT L YT + F +++ TV ++ V DG V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPI 113
L LWDTAG E + L + FL+ + + S SF NV + W +L+ +C + I
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDI 130
Query: 114 ILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173
+L+G K DL + RE V Q ++LA K + Y E SA T + + +
Sbjct: 131 VLIGNKADLPDQRE------------VNERQARELAEKY-GIPYFETSAATGQNV----E 173
Query: 174 EAVRAVLRPEPVKRRQRKCV 193
++V +L + + +R KCV
Sbjct: 174 KSVETLL--DLIMKRMEKCV 191
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 18/194 (9%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
R K V++G VGKT + + F Y PTV + YS T+ L L DTAGQ
Sbjct: 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQ 82
Query: 65 EDYDRLRPLSY-PQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTKID 121
++Y L P S+ +++ YSV S SF + S Y +L H P++LVG K D
Sbjct: 83 DEYSIL-PYSFIIGVHGYVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRVPVVLVGNKAD 140
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
L +RE V+ +G+KLA A +ME SA + + +F + ++ + R
Sbjct: 141 LSPERE------------VQAVEGKKLAESWGAT-FMESSARENQLTQGIFTKVIQEIAR 187
Query: 182 PEPVKRRQRKCVII 195
E ++R+C ++
Sbjct: 188 VENSYGQERRCHLM 201
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 33/200 (16%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTV------DG-----IPVS 55
IK + +GD VGKT L YT + F +++ TV ++ V DG V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPI 113
L LWDTAG E + L + FL+ + + S SF NV + W +L+ +C + I
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQANAYCENPDI 130
Query: 114 ILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173
+L+G K DL + RE V Q ++LA K + Y E SA T Q +
Sbjct: 131 VLIGNKADLPDQRE------------VNERQARELAEKY-GIPYFETSAATG----QNVE 173
Query: 174 EAVRAVLRPEPVKRRQRKCV 193
++V +L + + +R KCV
Sbjct: 174 KSVETLL--DLIXKRXEKCV 191
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN--YSAPFTVDGIPVSLGLWDTAGQE 65
K V++GD GK+ +++ + D F E+ + +S V+ V +WDTAGQE
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFV-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y L P+ Y +I + V + +SF+ KW EL+ P+ + L G K DL +
Sbjct: 73 RYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLD 131
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
R+ V E Q A + + +ME SA T ++++F E R + R +P
Sbjct: 132 ARK------------VTAEDAQTYAQE-NGLFFMETSAKTATNVKEIFYEIARRLPRVQP 178
Query: 185 VK 186
+
Sbjct: 179 TE 180
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 33/200 (16%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTV------DG-----IPVS 55
IK + +GD VGKT L YT + F +++ TV ++ V DG V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPI 113
L LWDTAG E + L + FL+ + + S SF NV + W +L+ +C + I
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDI 130
Query: 114 ILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173
+L+G K DL + RE V Q ++LA K + Y E SA T Q +
Sbjct: 131 VLIGNKADLPDQRE------------VNERQARELAEKY-GIPYFETSAATG----QNVE 173
Query: 174 EAVRAVLRPEPVKRRQRKCV 193
++V +L + + +R KCV
Sbjct: 174 KSVETLL--DLIMKRMEKCV 191
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 24/179 (13%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGI-----PVSLGLWDT 61
K +++G+ +VGKT L Y DSF +V TV F V I + L +WDT
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV----GIDFKVKTIYRNDKRIKLQIWDT 64
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKI 120
AG E Y + Y F++ Y + + SF N W ++K + D A ++LVG K
Sbjct: 65 AGLERYRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKC 123
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
D ++R V E+G++LA+ + ++ E SA ++Q F+ V +
Sbjct: 124 DXEDER------------VVSSERGRQLADHL-GFEFFEASAKDNINVKQTFERLVDVI 169
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Query: 2 SSGRP---IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLG 57
+ G P K V+VGDG GKT + + T F +YV T+ + + F + P+
Sbjct: 3 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 62
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVG 117
+WDTAGQE + L Y Q +I + V S ++ NV + W+ +L C + PI+L G
Sbjct: 63 VWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCG 121
Query: 118 TKIDLREDR 126
K+D+++ +
Sbjct: 122 NKVDIKDRK 130
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Query: 2 SSGRP---IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLG 57
+ G P K V+VGDG GKT + + T F +YV T+ + + F + P+
Sbjct: 5 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 64
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVG 117
+WDTAG E + LR Y Q +I + V S ++ NV + W+ +L C + PI+L G
Sbjct: 65 VWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCG 123
Query: 118 TKIDLREDR 126
K+D+++ +
Sbjct: 124 NKVDIKDRK 132
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V+VGDG GKT + + T F +YV T+ + + F + P+ +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ LR Y Q +I + V S ++ NV + W+ +L C + PI+L G K+D+++
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDR 125
Query: 126 R 126
+
Sbjct: 126 K 126
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQED 66
K V +G+ VGKT ++ + D+F Y T+ D S +D PV L LWDTAGQE
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPE-LKHHCPDAPIILVGTKIDLRED 125
+ L P + ++ Y + + SF+N T+KW + L D I LVG K DL +
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFEN-TTKWIQDILNERGKDVIIALVGNKTDLGD- 120
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
L V E+G + A + + E SA ++ +F
Sbjct: 121 -----------LRKVTYEEGXQKAQEYNTX-FHETSAKAGHNIKVLF 155
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Query: 2 SSGRP---IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLG 57
+ G P K V+VGDG GKT + + T F +YV T+ + + F + P+
Sbjct: 3 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 62
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVG 117
+WDTAG E + LR Y Q +I + V S ++ NV + W+ +L C + PI+L G
Sbjct: 63 VWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCG 121
Query: 118 TKIDLREDR 126
K+D+++ +
Sbjct: 122 NKVDIKDRK 130
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K V++GD VGK+ +L +T + F E T+ ++ VDG + +WDTAGQE
Sbjct: 21 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y + Y L+ Y + +++NV +W EL+ H + I+LVG K DLR
Sbjct: 81 RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR- 138
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+L V ++ + A K + ++E SAL + F + + R
Sbjct: 139 -----------HLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEIYR 183
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQE 65
K +++G+ VGK+C+L+ ++ D++ +Y+ T+ ++ +DG V L +WDTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPI-ILVGTKIDLRE 124
+ + Y + +I Y V SF+ V W E+ + + +LVG K DL++
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKD 127
Query: 125 DR 126
R
Sbjct: 128 KR 129
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQE 65
K +++G+ VGK+C+L+ ++ D++ +Y+ T+ ++ +DG V L +WDTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPI-ILVGTKIDLRE 124
+ + Y + +I Y V SF+ V W E+ + + +LVG K DL++
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKD 127
Query: 125 DR 126
R
Sbjct: 128 KR 129
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Query: 2 SSGRP---IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLG 57
+ G P K V+VGDG GKT + + T +YV T+ + + F + P+
Sbjct: 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFN 67
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVG 117
+WDTAGQE + LR Y Q +I + V S ++ NV + W+ +L C + PI+L G
Sbjct: 68 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCG 126
Query: 118 TKIDLREDR 126
K+D+++ +
Sbjct: 127 NKVDIKDRK 135
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K V++GD VGK+ +L +T + F E T+ ++ VDG + +WDTAGQE
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y + Y L+ Y + +++NV +W EL+ H + I+LVG K DLR
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR- 147
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
+L V ++ + A K + ++E SAL + F
Sbjct: 148 -----------HLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAF 183
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 31/197 (15%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
+K +++GD VGKT ++ Y F +Y T+ D + VD V++ +WDTAGQE
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPE-LKHHCP----DAPIILVGTKI 120
+ L Y D ++ + V +P++F + S W E L P + P +++G KI
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DL E+R+ V ++ Q + Y E SA + Q F R L
Sbjct: 128 DL-ENRQ------------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
Query: 181 R-----------PEPVK 186
+ PEP+K
Sbjct: 175 KQETEVELYNEFPEPIK 191
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 14/162 (8%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F +Y PT+ D+Y+ +VDGIP L + DTAGQE++ +R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLREDRETLNLLSEQNL 137
FL+ +++ SF+ V + L+ D P++LVG K DL R+
Sbjct: 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ---------- 131
Query: 138 SPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V R + V Y E SA + + + F++ VRAV
Sbjct: 132 --VPRSEASAFGAS-HHVAYFEASAKLRLNVDEAFEQLVRAV 170
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 20/183 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
+K +++GD VGKT ++ Y F +Y T+ D + VD V++ +WDTAGQE
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPE-LKHHCP----DAPIILVGTKI 120
+ L Y D ++ + V +P++F + S W E L P + P +++G KI
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DL E+R+ V ++ Q + Y E SA + Q F R L
Sbjct: 128 DL-ENRQ------------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
Query: 181 RPE 183
+ E
Sbjct: 175 KQE 177
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQE 65
K +++G+ VGK+C+L+ ++ D++ +Y+ T+ ++ +DG V L +WDTAGQE
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPI-ILVGTKIDLRE 124
+ + Y + +I Y V SF+ V W E+ + + +LVG K DL++
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKD 140
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
R V+ + ++ A+ + ++E SAL + F R +
Sbjct: 141 KR------------VVEYDVAKEFADA-NKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQED 66
K +++GD VGK+C+L+ + D++ Y+ T+ ++ +DG + L +WDTAGQE
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL-KHHCPDAPIILVGTKIDL 122
+ + Y ++ Y V SF+NV +W E+ ++ + +LVG K DL
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 116
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V++G+ VGKTC++ +T FP G+ D ++G V L +WDTAGQE
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPI-ILVGTKIDLRE 124
+ + Y + ++ Y + SF +W E++ + + I +LVG KIDL E
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASNKVITVLVGNKIDLAE 145
Query: 125 DRE 127
RE
Sbjct: 146 RRE 148
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V+VGDG GKT + + T F +Y+ T+ + + F + + +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ LR Y +I + V S ++ NV + W+ +L C + PI+L G K+D++E
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDVKER 123
Query: 126 R---ETLNLLSEQNL 137
+ +T+ ++NL
Sbjct: 124 KVKAKTITFHRKKNL 138
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V+VGDG GKT + + T F +Y+ T+ + + F + + +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ LR Y +I + V S ++ NV + W+ +L C + PI+L G K+D++E
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDVKER 124
Query: 126 R---ETLNLLSEQNL 137
+ +T+ ++NL
Sbjct: 125 KVKAKTITFHRKKNL 139
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 86/197 (43%), Gaps = 31/197 (15%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
+K +++GD VGKT ++ Y F +Y T+ D + VD V++ +WDTAGQE
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPE-LKHHCP----DAPIILVGTKI 120
+ L Y D ++ + V +P++F + S W E L P + P +++G KI
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
D E+R+ V ++ Q + Y E SA + Q F R L
Sbjct: 128 DF-ENRQ------------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
Query: 181 R-----------PEPVK 186
+ PEP+K
Sbjct: 175 KQETEVELYNEFPEPIK 191
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 1 MSSGRP-----IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPV 54
MSS P K +++GD VGK+C+L+ + D++ Y+ T+ ++ +DG +
Sbjct: 6 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 65
Query: 55 SLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL-KHHCPDAPI 113
L +WDTAGQE + + Y ++ Y V SF+NV +W E+ ++ +
Sbjct: 66 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNK 124
Query: 114 ILVGTKIDL 122
+LVG K DL
Sbjct: 125 LLVGNKCDL 133
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 1 MSSGRP-----IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPV 54
MSS P K +++GD VGK C+L+ + D++ Y+ T+ ++ +DG +
Sbjct: 6 MSSMNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 65
Query: 55 SLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL-KHHCPDAPI 113
L +WDTAGQE + + Y ++ Y V SF+NV +W E+ ++ +
Sbjct: 66 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNK 124
Query: 114 ILVGTKIDL 122
+LVG K DL
Sbjct: 125 LLVGNKCDL 133
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L+ + D++ Y+ T+ ++ +DG + L +WDTAGQE
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL-KHHCPDAPIILVGTKIDL 122
+ + Y ++ Y V SF+NV +W E+ ++ + +LVG K DL
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 123
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L+ + D++ Y+ T+ ++ +DG + L +WDTAGQE
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL-KHHCPDAPIILVGTKIDL 122
+ + Y ++ Y V SF+NV +W E+ ++ + +LVG K DL
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 123
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 16/177 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K V++GD VGK+ +L +T + F E T+ ++ VDG + +WDTAG E
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y + Y L+ Y + +++NV +W EL+ H + I+LVG K DLR
Sbjct: 69 RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR- 126
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+L V ++ + A K + ++E SAL + F + + R
Sbjct: 127 -----------HLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEIYR 171
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L+ + D++ Y+ T+ ++ +DG + L +WDTAGQE
Sbjct: 26 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL-KHHCPDAPIILVGTKIDL 122
+ + Y ++ Y V SF+NV +W E+ ++ + +LVG K DL
Sbjct: 86 RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 142
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L+ + D++ Y+ T+ ++ +DG + L +WDTAGQE
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL-KHHCPDAPIILVGTKIDL 122
+ + Y ++ Y V SF+NV +W E+ ++ + +LVG K DL
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 150
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWD 60
S R K +V+GD VGKTC+ + FP T+ D +DG + + LWD
Sbjct: 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 75
Query: 61 TAGQEDYDR-LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVG 117
TAGQE + + + Y + Y + + +SF ++ + W E K H D P ILVG
Sbjct: 76 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVG 134
Query: 118 TKIDLR 123
K DLR
Sbjct: 135 NKCDLR 140
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 83 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 128
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 129 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L+ + D++ Y+ T+ ++ +DG + L +WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL-KHHCPDAPIILVGTKIDL 122
+ + Y ++ Y V SF+NV +W E+ ++ + +LVG K DL
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGIKCDL 125
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K V+VGDG GKT + + T F +Y+ T+ + + F + + +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125
+ LR Y +I + V S ++ NV + W+ +L C + PI+L G K+D++E
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDVKER 131
Query: 126 R---ETLNLLSEQNL 137
+ +T+ ++NL
Sbjct: 132 KVKAKTITFHRKKNL 146
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 81 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 126
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 127 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 81 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 126
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 127 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K V++GD VGK+ +L +T + F E T+ ++ VDG + +WDTAG E
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y + Y L+ Y + +++NV +W EL+ H + I+LVG K DLR
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR- 147
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
+L V ++ + A K + ++E SAL + F
Sbjct: 148 -----------HLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAF 183
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K + I + F EY PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 86/197 (43%), Gaps = 31/197 (15%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
+K +++GD VGKT ++ Y F +Y T+ D + VD V++ +WDTAG E
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPE-LKHHCP----DAPIILVGTKI 120
+ L Y D ++ + V +P++F + S W E L P + P +++G KI
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
DL E+R+ V ++ Q + Y E SA + Q F R L
Sbjct: 128 DL-ENRQ------------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
Query: 181 R-----------PEPVK 186
+ PEP+K
Sbjct: 175 KQETEVELYNEFPEPIK 191
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 15/169 (8%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
+ V G G VGK+ +++ + +F Y+PTV D Y + D +L + DT G +
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 64
Query: 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYP--ELKHHCPDAPIILVGTKIDLRED 125
++ LS + F++ YS+ S S + + + E+K PI+LVG K D
Sbjct: 65 PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 124
Query: 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174
RE V+ + + LA + +ME SA ++++F E
Sbjct: 125 RE------------VQSSEAEALARTWKCA-FMETSAKLNHNVKELFQE 160
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K V++GD VGK+ +L +T + F E T+ ++ VDG + +WDTAG E
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPII-LVGTKIDLRE 124
Y + Y L+ Y + +++NV +W EL+ H +I LVG K DLR
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR- 129
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
+L V ++ + A K + ++E SAL + F
Sbjct: 130 -----------HLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAF 165
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K V++GD VGK+ +L +T + F E T+ ++ VDG + +WDTAG E
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPII-LVGTKIDLRE 124
Y + Y L+ Y + +++NV +W EL+ H +I LVG K DLR
Sbjct: 66 RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR- 123
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
+L V ++ + A K + ++E SAL + F
Sbjct: 124 -----------HLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAF 159
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG + DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNRCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 17/161 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177
V+ Q Q LA + Y+E SA T++G+ F VR
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY P++ D+Y +DG L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 24/189 (12%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV---FDNYSAPFTVDGIPVSLGLWDTAG 63
K V++GD VGK+ +L +T D F E T+ F S + I + +WDTAG
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKI-IKAQIWDTAG 66
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDL 122
QE Y + Y L+ Y + +SF+N+ KW EL+ + + I+LVG K DL
Sbjct: 67 QERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLVGNKSDL 125
Query: 123 REDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
+ L ++++ + + ++ +KLA ++E SAL + F + L
Sbjct: 126 KH----LRVINDNDATQYAKK--EKLA-------FIETSALEATNVELAFHQ-----LLN 167
Query: 183 EPVKRRQRK 191
E RQ+K
Sbjct: 168 EIYNVRQKK 176
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 10 VVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQEDYD 68
+++GD VGK+C+L+ + D++ Y+ T+ ++ +DG + L +WDTAGQE +
Sbjct: 2 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 61
Query: 69 RLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL-KHHCPDAPIILVGTKIDL 122
+ Y ++ Y V SF+NV +W E+ ++ + +LVG K DL
Sbjct: 62 TITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY P++ D+Y +DG L + DTAGQE+Y +R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 82 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 127
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 128 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F E+ PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 27/169 (15%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTV-----------DGIPVS 55
IK + +GD VGKT +L YT F +++ TV ++ V G +
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC--PDAPI 113
L LWDTAG E + L + FL+ + + + SF NV + W +L+ H + I
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQMHAYSENPDI 130
Query: 114 ILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162
+L G K DL + R VK E+ ++LA K + Y E SA
Sbjct: 131 VLCGNKSDLEDQR------------AVKEEEARELAEKY-GIPYFETSA 166
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ ++Y +DG L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 16/177 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFT-VDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L +T F + T+ + V G + L +WDTAGQE
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ + Y L+ Y + S++++++S W + ++ P+ IIL+G K DL
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLTNPNTVIILIGNKADLEA 134
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R+ V E+ ++ A + + ++E SA T + F EA + + +
Sbjct: 135 QRD------------VTYEEAKQFAEE-NGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DT GQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F +Y PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L+ + D++ Y+ T+ ++ +DG + L +WDTAGQE
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL-KHHCPDAPIILVGTKIDLRE 124
+ + Y ++ Y V S+ NV +W E+ ++ + +LVG K DL
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLTT 128
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
+ V ++ A+ + + ++E SA + Q F
Sbjct: 129 KK------------VVDNTTAKEFADSL-GIPFLETSAKNATNVEQAF 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DT GQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L+ + D++ Y+ T+ ++ +DG + L +WDTAGQE
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL-KHHCPDAPIILVGTKIDLRE 124
+ + Y ++ Y V S+ NV +W E+ ++ + +LVG K DL
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLTT 128
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
+ V ++ A+ + + ++E SA + Q F
Sbjct: 129 KK------------VVDNTTAKEFADSL-GIPFLETSAKNATNVEQAF 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAG+E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F +Y PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTA QE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKXDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 24/184 (13%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGL--- 58
S+ R +K ++GD VGK+ ++ + D F PT+ A F +P L
Sbjct: 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTI----GASFMTKTVPCGNELHKF 74
Query: 59 --WDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPII-L 115
WDTAGQE + L P+ Y + +I Y + SF + KW ELK H P+ ++ +
Sbjct: 75 LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAI 133
Query: 116 VGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEA 175
G K DL + RE P+K ++ A I A+ +E SA + ++F
Sbjct: 134 AGNKCDLSDIREV----------PLK--DAKEYAESIGAI-VVETSAKNAINIEELFQGI 180
Query: 176 VRAV 179
R +
Sbjct: 181 SRQI 184
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTA QE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKXDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWD 60
+ R K +V+GD VGKTC+ + FP T+ D +DG + + LWD
Sbjct: 25 ARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 84
Query: 61 TAGQEDYDR-LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVG 117
TAGQE + + + Y + Y + +SF ++ + W E K H D P ILVG
Sbjct: 85 TAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPA-WIEECKQHLLANDIPRILVG 143
Query: 118 TKIDLR 123
K DLR
Sbjct: 144 NKCDLR 149
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 18/147 (12%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +D L + DTAGQE++ +R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA---PIILVGTKIDLREDRETLNLLSEQ 135
D FLI YSV +SF++V + +L D P+ILV K+DL
Sbjct: 91 DGFLIVYSVTDKASFEHVDR--FHQLILRVKDRESFPMILVANKVDL------------M 136
Query: 136 NLSPVKREQGQKLANKIRAVKYMECSA 162
+L V R+QG+++A K + Y+E SA
Sbjct: 137 HLRKVTRDQGKEMATKYN-IPYIETSA 162
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K V++GD VGK+ +L +T + F + T+ ++ ++G + +WDTAGQE
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKIDLRE 124
Y + Y LI Y + SS++N + W EL+ + D + L+G K DL
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDL-- 130
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
+L V E+ + A + + + + E SAL + + F+E + + +
Sbjct: 131 ----------AHLRAVPTEESKTFAQENQLL-FTETSALNSENVDKAFEELINTIYQ 176
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAGQE+ +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAG E+Y +R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 81 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 126
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 127 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 16/180 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
K V++G+ VGK+ +++ + F T+ + + +D V +WDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y L P+ Y ++ Y + + +F + W EL+ P I L G K DL
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKT-WVKELQRQASPSIVIALAGNKADLAN 127
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
R V+ E+ Q A+ ++ +ME SA T + +F + + + EP
Sbjct: 128 KR------------MVEYEEAQAYADD-NSLLFMETSAKTAMNVNDLFLAIAKKLPKSEP 174
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 24/183 (13%)
Query: 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVS-----LG 57
S R +K ++GD VGK+ ++ + DSF PT+ A F +
Sbjct: 2 SLRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTI----GASFMTKTVQYQNELHKFL 57
Query: 58 LWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPII-LV 116
+WDTAGQE + L P+ Y + +I Y + +F + + W EL+ H P + ++ +
Sbjct: 58 IWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGPPSIVVAIA 116
Query: 117 GTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAV 176
G K DL + RE V + A+ I A+ ++E SA + ++F E
Sbjct: 117 GNKCDLTDVRE------------VMERDAKDYADSIHAI-FVETSAKNAININELFIEIS 163
Query: 177 RAV 179
R +
Sbjct: 164 RRI 166
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTV--DGIPVSLGLWDTAGQ 64
K V++G+ VGK+ +++ + F EY + TV D V +WDTAGQ
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFH-EYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQ 64
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLR 123
E Y L P+ Y ++ Y + + +F + W EL+ P+ I L G K DL
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQRQASPNIVIALAGNKADLA 123
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
R V+ ++ Q A+ ++ +ME SA T + ++F
Sbjct: 124 SKR------------AVEFQEAQAYADD-NSLLFMETSAKTAMNVNEIF 159
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F E PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ ++ ++K D P++LVG K DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDL-------------A 121
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V+ Q Q LA + Y+E SA T++G+ F VR +
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTV--DGIPVSLGLWDTAGQ 64
K V++G+ VGK+ +++ + F EY + TV D V +WDTAGQ
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFH-EYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 62
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLR 123
E Y L P+ Y ++ Y + + +F + W EL+ P+ I L G K DL
Sbjct: 63 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQRQASPNIVIALAGNKADLA 121
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
R V+ ++ Q A+ ++ +ME SA T + ++F
Sbjct: 122 SKR------------AVEFQEAQAYADD-NSLLFMETSAKTAMNVNEIF 157
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 18/147 (12%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +D L + DTAGQE++ +R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA---PIILVGTKIDLREDRETLNLLSEQ 135
D FLI YSV +SF++V + +L D P+ILV K+DL
Sbjct: 91 DGFLIVYSVTDKASFEHVDR--FHQLILRVKDRESFPMILVANKVDL------------M 136
Query: 136 NLSPVKREQGQKLANKIRAVKYMECSA 162
+L V R+QG+++A K + Y+E SA
Sbjct: 137 HLRKVTRDQGKEMATKYN-IPYIETSA 162
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ + ++K D P++LVG K DL
Sbjct: 77 EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDLPS------------ 123
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V +Q Q LA + ++E SA T++G+ F VR +
Sbjct: 124 -RTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ + ++K D P++LVG K DL
Sbjct: 77 EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDLPS------------ 123
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V +Q Q LA + ++E SA T++G+ F VR +
Sbjct: 124 -RTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
K V++G+ VGK+ +++ + F T+ + + +D V +WDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y L P+ Y ++ Y + + SF + W EL+ P+ I L G K DL
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLAN 126
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
R V ++ Q A+ ++ +ME SA T + ++F
Sbjct: 127 KR------------AVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 161
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 16/177 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFT-VDGIPVSLGLWDTAGQE 65
K +++GD VGK+C+L +T F + T+ + V G + L +WDTAGQ
Sbjct: 31 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
+ + Y L+ Y + S++++++S W + ++ P+ IIL+G K DL
Sbjct: 91 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLTNPNTVIILIGNKADLEA 149
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R+ V E+ ++ A + + ++E SA T + F EA + + +
Sbjct: 150 QRD------------VTYEEAKQFAEE-NGLLFLEASAKTGENVEDAFLEAAKKIYQ 193
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
K V++G+ VGK+ +++ + F T+ + + +D V +WDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y L P+ Y ++ Y + + SF + W EL+ P+ I L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
R V ++ Q A+ ++ +ME SA T + ++F
Sbjct: 126 KR------------AVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 4/134 (2%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP-FTVDGIPVSLGLWDTAGQE 65
K V+VGD +VGKTC++ + T +F T+ +++ + G V L +WDTAGQE
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPI-ILVGTKIDLRE 124
+ + Y + ++ Y + SSF +V W +++ + + +L+G K DL E
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSE 148
Query: 125 DRETLNLLSEQNLS 138
RE ++L Q+L+
Sbjct: 149 LRE-VSLAEAQSLA 161
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
K V++G+ VGK+ +++ + F T+ + + +D V +WDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y L P+ Y ++ Y + + SF + W EL+ P+ I L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
R V ++ Q A+ ++ +ME SA T + ++F
Sbjct: 126 KR------------AVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
K V++G+ VGK+ +++ + F T+ + + +D V +WDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y L P+ Y ++ Y + + SF + W EL+ P+ I L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
R V ++ Q A+ ++ +ME SA T + ++F
Sbjct: 126 KR------------AVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 16/177 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQE 65
K V++GD VGK+ +L +TTD F E T+ ++ V+ + +WDTAG E
Sbjct: 11 FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKIDLRE 124
Y + Y LI Y + SS++N + W EL+ + D + L+G K DL
Sbjct: 71 RYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLTELRENADDNVAVGLIGNKSDLAH 129
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181
R P + + N++ + E SAL + + F E + A+ +
Sbjct: 130 LRAV----------PTDEAKNFAMENQML---FTETSALNSDNVDKAFRELIVAIFQ 173
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 18/147 (12%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F +Y PT+ D+Y +D L + DTAGQE++ +R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA---PIILVGTKIDLREDRETLNLLSEQ 135
D FLI YSV +SF++V + +L D P+ILV K+DL
Sbjct: 91 DGFLIVYSVTDKASFEHVDR--FHQLILRVKDRESFPMILVANKVDL------------M 136
Query: 136 NLSPVKREQGQKLANKIRAVKYMECSA 162
+L V R+QG+++A K + Y+E SA
Sbjct: 137 HLRKVTRDQGKEMATKYN-IPYIETSA 162
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLW 59
SS + K V+ GD VGK+ L+ + F T+ D VDG L LW
Sbjct: 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLW 82
Query: 60 DTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA-PIILVGT 118
DTAGQE + + + + D L+ Y V SF N+ +W ++ + PI+LVG
Sbjct: 83 DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGN 141
Query: 119 KIDLREDRET 128
K D+R+ T
Sbjct: 142 KADIRDTAAT 151
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
K V++G+ VGK+ +++ + F T+ + + +D V +WDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y L P+ Y ++ Y + + SF + W EL+ P+ I L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
R V ++ Q A+ ++ +ME SA T + ++F
Sbjct: 126 KR------------AVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
K V++G+ VGK+ +++ + F T+ + + +D V +WDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y L P+ Y ++ Y + + SF + W EL+ P+ I L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
R V ++ Q A+ ++ +ME SA T + ++F
Sbjct: 126 KR------------AVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 24/184 (13%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVS-----L 56
S+ R +K ++GD VGK+ ++ + DSF PT+ A F +
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTI----GASFMTKTVQYQNELHKF 57
Query: 57 GLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPII-L 115
+WDTAG E + L P+ Y + +I Y + +F + + W EL+ H P + ++ +
Sbjct: 58 LIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGPPSIVVAI 116
Query: 116 VGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEA 175
G K DL + RE V + A+ I A+ ++E SA + ++F E
Sbjct: 117 AGNKCDLTDVRE------------VMERDAKDYADSIHAI-FVETSAKNAININELFIEI 163
Query: 176 VRAV 179
R +
Sbjct: 164 SRRI 167
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAGQE+Y +R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF ++ + + ++K D P++LVG K DL
Sbjct: 94 EGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDL-------------P 139
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V +Q +LA K + ++E SA T++G+ F VR +
Sbjct: 140 TRTVDTKQAHELA-KSYGIPFIETSAKTRQGVEDAFYTLVREI 181
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 18/147 (12%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F +Y PT+ D+Y +D L + DTAGQE++ +R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA---PIILVGTKIDLREDRETLNLLSEQ 135
D FLI YSV +SF++V + +L D P+ILV K+DL
Sbjct: 86 DGFLIVYSVTDKASFEHVDR--FHQLILRVKDRESFPMILVANKVDL------------M 131
Query: 136 NLSPVKREQGQKLANKIRAVKYMECSA 162
+L V R+QG+++A K + Y+E SA
Sbjct: 132 HLRKVTRDQGKEMATKYN-IPYIETSA 157
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
K V++G+ VGK+ +++ + F T+ + + +D V +WDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y L P+ Y ++ Y + + SF + W EL+ P+ I L G K DL
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
R V ++ Q A+ ++ +ME SA T + ++F
Sbjct: 126 KR------------AVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + I + F EY PT+ D+Y +DG L + DTAG E+Y +R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLREDRETLNLLSEQN 136
+ FL +++ + SF+++ + ++K D P++LVG K DL
Sbjct: 94 EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPS------------ 140
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V +Q Q LA + ++E SA T++G+ F VR +
Sbjct: 141 -RTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 21/189 (11%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
M + K ++G +VGK+ + I + F Y PT+ + ++ TV+G L L D
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61 TAGQEDYDRLRPLSYP-QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA--PIILVG 117
TAGQ++Y + P +Y + +++ YSV S SF+ V + +L PI+LVG
Sbjct: 61 TAGQDEYS-IFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVG 118
Query: 118 TKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177
K DL +R + E+G+ LA A ++E SA + VF R
Sbjct: 119 NKKDLHMER------------VISYEEGKALAESWNAA-FLESSAKENQTAVDVFR---R 162
Query: 178 AVLRPEPVK 186
+L E ++
Sbjct: 163 IILEAEKLE 171
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 85/181 (46%), Gaps = 21/181 (11%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K ++G +VGK+ + I + F Y PT+ + ++ TV+G L L DTAGQ++Y
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 68 DRLRPLSYP-QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA--PIILVGTKIDLRE 124
+ P +Y + +++ YSV S SF+ V + +L PI+LVG K DL
Sbjct: 63 S-IFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 120
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184
+R + E+G+ LA A ++E SA + VF R +L E
Sbjct: 121 ER------------VISYEEGKALAESWNAA-FLESSAKENQTAVDVFR---RIILEAEK 164
Query: 185 V 185
+
Sbjct: 165 I 165
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 16/178 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
K +V+G+ GK+C+L + F + T+ + S V G V L +WDTAGQE
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLRE 124
+ + Y L+ Y + S +++ +T+ W + + + IIL G K DL
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLASQNIVIILCGNKKDLDA 129
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
DRE L + + A + + ++E SALT + + F + R +L
Sbjct: 130 DREVTFL------------EASRFAQE-NELMFLETSALTGENVEEAFVQCARKILNK 174
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 21/188 (11%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
M + K ++G +VGK+ + I + F Y PT+ + ++ TV+G L L D
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61 TAGQEDYDRLRPLSYP-QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA--PIILVG 117
TAGQ++Y + P +Y + +++ YSV S SF+ V + +L PI+LVG
Sbjct: 61 TAGQDEYS-IFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVG 118
Query: 118 TKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177
K DL +R + E+G+ LA A ++E SA + VF R
Sbjct: 119 NKKDLHMER------------VISYEEGKALAESWNAA-FLESSAKENQTAVDVFR---R 162
Query: 178 AVLRPEPV 185
+L E +
Sbjct: 163 IILEAEKM 170
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
K V++G+ VGK+ +++ + F T+ + + +D V +WDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y L P+ Y ++ Y + + SF + W EL+ P+ I L G K DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLAN 124
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
R V ++ Q A+ ++ +ME SA T + ++F
Sbjct: 125 KR------------AVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 159
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 18/169 (10%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTV--DGIPVSLGLWDTAGQ 64
K V++G+ VGK+ +++ + F EY + TV D V +WDTAG
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFH-EYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLR 123
E Y L P+ Y ++ Y + + +F + W EL+ P+ I L G K DL
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQRQASPNIVIALAGNKADLA 123
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
R V+ ++ Q A+ ++ +ME SA T + ++F
Sbjct: 124 SKR------------AVEFQEAQAYADD-NSLLFMETSAKTAMNVNEIF 159
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 16/178 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
K +V+G+ GK+C+L + F + T+ + S V G V L +WDTAGQE
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCP-DAPIILVGTKIDLRE 124
+ + Y L+ Y + S +++ +T+ W + + + IIL G K DL
Sbjct: 72 RFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLASQNIVIILCGNKKDLDA 130
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
DRE L + + A + + ++E SALT + + F + R +L
Sbjct: 131 DREVTFL------------EASRFAQE-NELMFLETSALTGEDVEEAFVQCARKILNK 175
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 16/168 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
K V++G+ VGK+ +++ + F T+ + + +D V +WDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLRE 124
Y L P Y ++ Y + + SF + W EL+ P+ I L G K DL
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQASPNIVIALSGNKADLAN 126
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172
R V ++ Q A+ ++ + E SA T + ++F
Sbjct: 127 KR------------AVDFQEAQSYADD-NSLLFXETSAKTSXNVNEIF 161
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 16/176 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
K +V+G GK+C+L + + F + T+ + S V G V L +WDTAGQE
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLRE 124
+ + Y L+ Y + S +++++ + W + + P+ +IL G K DL
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAA-WLTDARTLASPNIVVILCGNKKDLDP 144
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
+RE L + + A + + ++E SALT + + F + R +L
Sbjct: 145 EREVTFL------------EASRFAQE-NELMFLETSALTGENVEEAFLKCARTIL 187
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ + + + T +F +Y PT+ D Y VD P L + DTAG E + +R L
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 79 DVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLREDRETLNLLSEQNL 137
F++ YS+V+ SF ++ ++ P+ILVG K+DL ++
Sbjct: 76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL------------ESE 123
Query: 138 SPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
V +G+ LA + +ME SA ++ + ++F E VR +
Sbjct: 124 REVSSSEGRALAEEW-GCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 24/193 (12%)
Query: 8 KCVVVGDGTVGKTCM--LISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVS---LGLWDTA 62
+ V++G+ VGK+ + + + DS + D Y VDG + L +W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKI 120
G+ ++ L D +LI YS+ +SF+ S+ +L+ D PIILVG K
Sbjct: 68 GENEW--LHDHXMQVGDAYLIVYSITDRASFEK-ASELRIQLRRARQTEDIPIILVGNKS 124
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV- 179
DL RE +SE V + K++E SA Q ++++F+ VR V
Sbjct: 125 DLVRXREV--SVSEGRAXAV-----------VFDCKFIETSAAVQHNVKELFEGIVRQVR 171
Query: 180 LRPEPVKRRQRKC 192
LR + ++ +R+
Sbjct: 172 LRRDSKEKNERRL 184
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 24/193 (12%)
Query: 8 KCVVVGDGTVGKTCM--LISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVS---LGLWDTA 62
+ V++G+ VGK+ + + + DS + D Y VDG + L +W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKI 120
G+ ++ L D +LI YS+ +SF+ S+ +L+ D PIILVG K
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEK-ASELRIQLRRARQTEDIPIILVGNKS 124
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV- 179
DL RE +SE V + K++E SA Q ++++F+ VR V
Sbjct: 125 DLVRXREV--SVSEGRAXAV-----------VFDXKFIETSAAVQHNVKELFEGIVRQVR 171
Query: 180 LRPEPVKRRQRKC 192
LR + ++ +R+
Sbjct: 172 LRRDSKEKNERRL 184
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 78/178 (43%), Gaps = 20/178 (11%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQE 65
K ++VG+ VGK+ + ++ + P D Y VD V+L ++D Q
Sbjct: 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 66 DYDR-LRPLSYPQTDVFLICYSVVSPSSFDNVTS---KWYPELKHHCPDAPIILVGTKID 121
D LR D FLI +SV SF V + HH D P+ILVG K D
Sbjct: 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNKSD 141
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
L RE V E+G+ LA + + K++E SA R++F+ AVR +
Sbjct: 142 LARSRE------------VSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
K ++G +VGK+ + I + F PT+ + ++ TV+G L L DTAGQ++Y
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 65
Query: 68 DRLRPLSYP-QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA--PIILVGTKIDLRE 124
+ P +Y + +++ YSV S SF+ V + +L PI+LVG K DL
Sbjct: 66 S-IFPQTYSIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183
+R + E+G+ LA A ++E SA + VF R +L E
Sbjct: 124 ER------------VISYEEGKALAESWNAA-FLESSAKENQTAVDVFR---RIILEAE 166
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 16/178 (8%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65
K +V+G+ GK+C+L + F + T+ + S V G V L +WDTAG E
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCP-DAPIILVGTKIDLRE 124
+ + Y L+ Y + S +++ +T+ W + + + IIL G K DL
Sbjct: 69 RFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLASQNIVIILCGNKKDLDA 127
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182
DRE L + + A + + ++E SALT + + F + R +L
Sbjct: 128 DREVTFL------------EASRFAQE-NELMFLETSALTGEDVEEAFVQCARKILNK 172
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVF---DNYSAPFTVDGIPVSLGLWDTAG 63
K ++VG+ VGK+ + + T G++ + D Y VD V+L ++D
Sbjct: 3 FKVMLVGESGVGKSTL--AGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 60
Query: 64 QEDYDR-LRPLSYPQTDVFLICYSVVSPSSFDNVTS---KWYPELKHHCPDAPIILVGTK 119
Q D L+ D FLI +SV SF V + HH D P+ILVG K
Sbjct: 61 QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNK 118
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
DL RE V E+G+ LA + + K++E SA R++F+ AVR +
Sbjct: 119 SDLARSRE------------VSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 7/131 (5%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDG-IPVSLGLW 59
S R +K VV+GDG GKT + + ++F +Y T+ D + T+ G + V+L +W
Sbjct: 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 60 DTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP----IIL 115
D GQ ++ L+ Y + + SF+N+ WY +K ++ + L
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVAL 120
Query: 116 VGTKIDLREDR 126
VG KIDL R
Sbjct: 121 VGNKIDLEHMR 131
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 16/158 (10%)
Query: 19 KTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78
K+ +++ + +F Y+PT+ D Y + D +L + DT G + ++ LS +
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 79 DVFLICYSVVSPSSFDNV--TSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQN 136
F++ +SV S S + + K ++K D P++LVG K D +
Sbjct: 81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-------------ET 127
Query: 137 LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDE 174
V + Q +A + + +ME SA ++++F E
Sbjct: 128 QREVDTREAQAVAQEWKCA-FMETSAKMNYNVKELFQE 164
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 16/176 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGI-PVSLGLWDTAGQE 65
K V++G+ VGKT +L +T + F + T+ +S + G V +WDTAG E
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPII-LVGTKIDLRE 124
Y + Y L+ + + ++ V +W EL H ++ LVG K DL +
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQ 144
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
RE V E+ + A + ++E SAL + F+ ++ +
Sbjct: 145 ARE------------VPTEEARMFAEN-NGLLFLETSALDSTNVELAFETVLKEIF 187
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 16/176 (9%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGI-PVSLGLWDTAGQE 65
K V++G+ VGKT +L +T + F + T+ +S + G V +WDTAG E
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPII-LVGTKIDLRE 124
Y + Y L+ + + ++ V +W EL H ++ LVG K DL +
Sbjct: 71 RYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQ 129
Query: 125 DRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
RE V E+ + A + ++E SAL + F+ ++ +
Sbjct: 130 ARE------------VPTEEARMFAEN-NGLLFLETSALDSTNVELAFETVLKEIF 172
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 26/183 (14%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
+ ++G GK+ + + + T F EY P + D YS+ TVD PV L + DTA D
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTA---D 78
Query: 67 YDR----LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDA----PIILVGT 118
D R L++ FL+ YS V + +S + L H + P +L+G
Sbjct: 79 LDTPRNCERYLNWAHA--FLVVYS-VDSRQSFDSSSSYLELLALHAKETQRSIPALLLGN 135
Query: 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178
K+D+ + R+ V + +G LA + + + + L ++ VF EAVR
Sbjct: 136 KLDMAQYRQ------------VTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183
Query: 179 VLR 181
R
Sbjct: 184 ARR 186
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 24/180 (13%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVF---DNYSAPFTVDGIPVSLGLWDTAG 63
K +++G+ VGK+ + + T G+ + D Y VD V+L ++D
Sbjct: 13 FKVMLLGESGVGKSTL--AGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 70
Query: 64 QEDYDR-LRPLSYPQTDVFLICYSVVSPSSFDNVTS---KWYPELKHHCPDAPIILVGTK 119
Q D L+ D FLI +SV SF V + HH D P+ILVG K
Sbjct: 71 QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNK 128
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
DL RE V E+G+ LA + + K++E SA R++F+ AVR +
Sbjct: 129 SDLARSRE------------VSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 23/179 (12%)
Query: 8 KCVVVGDGTVGKTCM--LISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVS---LGLWDTA 62
+ V++G+ VGK+ + + + DS + D Y VDG + L +W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKI 120
G+ ++ L D +LI YS+ +SF+ S+ +L+ D PIILVG K
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEK-ASELRIQLRRARQTEDIPIILVGNKS 124
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
DL RE V +G+ A + K++E SA Q ++++F+ VR V
Sbjct: 125 DLVRCRE------------VSVSEGRACA-VVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 23/179 (12%)
Query: 8 KCVVVGDGTVGKTCM--LISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVS---LGLWDTA 62
+ V++G+ VGK+ + + + DS + D Y VDG + L +W+
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKI 120
G+ ++ L D +LI YS+ +SF+ S+ +L+ D PIILVG K
Sbjct: 99 GENEW--LHDHCMQVGDAYLIVYSITDRASFEK-ASELRIQLRRARQTEDIPIILVGNKS 155
Query: 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
DL RE V +G+ A + K++E SA Q ++++F+ VR V
Sbjct: 156 DLVRCRE------------VSVSEGRACA-VVFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFD-NYSAPFTVD-GIPVSLGLWDTAGQE 65
K ++GDG VGKT + F Y TV N+ F D G + +WDTAGQE
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD-APIILVGTKIDLR 123
L+ + Y ++ + V S + N+ ++W E + + API++ KID++
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIK 130
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 26/174 (14%)
Query: 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67
+ V++GD VGKT + + + D Y TVDG +L + DT E
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 68 DRLRPLSYPQTD------VFLICYSVVSPSSFDNVTSKWYPELK--HHCPDAPIILVGTK 119
D+ S+ Q ++I YS+ SF++ S+ +L+ H PIILVG K
Sbjct: 66 DK----SWSQESCLQGGSAYVIVYSIADRGSFES-ASELRIQLRRTHQADHVPIILVGNK 120
Query: 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173
DL RE V E+G+ A + K++E SA Q + ++F+
Sbjct: 121 ADLARCRE------------VSVEEGRACA-VVFDCKFIETSATLQHNVAELFE 161
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 8 KCVVVGDGTVGKTCML--ISYTTDSFPGEYVPTV-FDNYSAPFTVDGI---PVSLGLWDT 61
K +VG+ GKT +L + T S G TV D P + + L +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKID 121
AG+E++ P Q ++L Y + + + W +K +P+ILVGT +D
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGTHLD 123
Query: 122 LREDRE 127
+ ++++
Sbjct: 124 VSDEKQ 129
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 8 KCVVVGDGTVGKTCML--ISYTTDSFPGEYVPTV-FDNYSAPFTVDGI---PVSLGLWDT 61
K +VG+ GKT +L + T S G TV D P + + L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 62 AGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKID 121
AG+E++ P Q ++L Y + + + W +K +P+ILVGT +D
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGTHLD 121
Query: 122 LREDRE 127
+ ++++
Sbjct: 122 VSDEKQ 127
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 21/183 (11%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCM--LISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGL 58
MS K +++G VGK+ + + D E +D VDG SL +
Sbjct: 2 MSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMV 58
Query: 59 WDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILV 116
+D Q+ L D ++I YSV SF+ S+ +L+ D PIILV
Sbjct: 59 YDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEK-ASELRVQLRRARQTDDVPIILV 117
Query: 117 GTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAV 176
G K DL RE V ++G+ A + K++E SA ++ +F+ V
Sbjct: 118 GNKSDLVRSRE------------VSVDEGRACA-VVFDCKFIETSAALHHNVQALFEGVV 164
Query: 177 RAV 179
R +
Sbjct: 165 RQI 167
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 21/176 (11%)
Query: 8 KCVVVGDGTVGKTCM--LISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +++G VGK+ + + D E +D VDG SL ++D Q+
Sbjct: 4 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMVYDIWEQD 60
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLR 123
L D ++I YSV SF+ S+ +L+ D PIILVG K DL
Sbjct: 61 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEK-ASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
RE V ++G+ A + K++E SA ++ +F+ VR +
Sbjct: 120 RSRE------------VSVDEGRACA-VVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 21/176 (11%)
Query: 8 KCVVVGDGTVGKTCM--LISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65
K +++G VGK+ + + D E +D VDG SL ++D Q+
Sbjct: 9 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMVYDIWEQD 65
Query: 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKH--HCPDAPIILVGTKIDLR 123
L D ++I YSV SF+ S+ +L+ D PIILVG K DL
Sbjct: 66 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEK-ASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 124 EDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179
RE V ++G+ A + K++E SA ++ +F+ VR +
Sbjct: 125 RSRE------------VSVDEGRACA-VVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 80/210 (38%), Gaps = 54/210 (25%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV--------------------- 39
M K V++G+ +VGK+ +++ T D+F T+
Sbjct: 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN 61
Query: 40 -----------------FDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82
N + + + +WDTAGQE Y + PL Y +
Sbjct: 62 NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI 121
Query: 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR 142
+ + + + ++ D + W +LK + IILV KID +++ +++L Q K
Sbjct: 122 VVFDISNSNTLDRAKT-WVNQLK-ISSNYIIILVANKID--KNKFQVDILEVQ-----KY 172
Query: 143 EQGQKLANKIRAVKYMECSALTQRGLRQVF 172
Q L +++ SA T ++ +F
Sbjct: 173 AQDNNLL-------FIQTSAKTGTNIKNIF 195
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 10/140 (7%)
Query: 8 KCVVVGDGTVGKTCMLISYTT--DSFPGEYVPTV-FDNYSAPFTV--DGIPVSLGLWDTA 62
K VVG+ TVGK+ ++ +T+ F +Y T + AP T+ + V L L DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPD--API--ILVGT 118
G + Y + ++ + V S SF++ + W+ LK PD P+ +LV
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKA-WFELLKSARPDRERPLRAVLVAN 140
Query: 119 KIDLREDRETLNLLSEQNLS 138
K DL R + L Q+ +
Sbjct: 141 KTDLPPQRHQVRLDMAQDWA 160
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 12/156 (7%)
Query: 1 MSSGRPIKCVVVGDGTVGKTCM--LISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGL 58
MSS K +++G GK+ M +I +F + D + G ++L L
Sbjct: 1 MSSNNRKKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNL 59
Query: 59 WDTAGQ----EDY-DRLRPLSYPQTDVFLICYSVVSPSSFDNVT--SKWYPELKHHCPDA 111
WD GQ E+Y + + + V + + V S ++ +K +L+ + PDA
Sbjct: 60 WDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDA 119
Query: 112 PIILVGTKIDL--REDRETLNLLSEQNLSPVKREQG 145
I ++ K+DL + RE L + +NLS E G
Sbjct: 120 KIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFG 155
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 22/146 (15%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDS------FPGEYVPTVFDNYSAPFTVDGIPVSLGLWD 60
+K +VG VGK+ +L +++ PG T D + V GIPV + D
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPG----TTRDVVESQLVVGGIPVQV--LD 278
Query: 61 TAG-QEDYDRLRPLSYPQT-----DVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPII 114
TAG +E D++ + ++ L+ ++ + + + + Y ++KH P+I
Sbjct: 279 TAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHR----PLI 334
Query: 115 LVGTKIDLREDRETLNLLSEQNLSPV 140
LV KIDL E + +L +N++ +
Sbjct: 335 LVMNKIDLVEKQLITSLEYPENITQI 360
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 15/127 (11%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY---SAPFTVDGIPVS------ 55
+ IK ++GDG GKT +L ++F + T N AP + G+
Sbjct: 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAP-NIKGLENDDELKEC 98
Query: 56 -LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPII 114
WD GQE ++ V+++ S D+ W ++ + +P+I
Sbjct: 99 LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLD----SRTDSNKHYWLRHIEKYGGKSPVI 154
Query: 115 LVGTKID 121
+V KID
Sbjct: 155 VVMNKID 161
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 11/122 (9%)
Query: 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64
+ ++ ++VG GKT +L GE V T+ TV+ +S +WD GQ
Sbjct: 16 KDVRILMVGLDAAGKTTILYKVKL----GEVVTTIPTIGFNVETVEFRNISFTVWDVGGQ 71
Query: 65 EDYDRLRPL---SYPQTDVFLICYSVVSPSSFDNVTSKWYPEL-KHHCPDAPIILVGTKI 120
D++RPL Y TD + D+ + + + + DA I++ K
Sbjct: 72 ---DKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQ 128
Query: 121 DL 122
DL
Sbjct: 129 DL 130
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 77/179 (43%), Gaps = 19/179 (10%)
Query: 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG 63
G +K +VG+ + GK+ ++ Y T ++ E P + VDG L + D G
Sbjct: 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGG 76
Query: 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPEL--KHHCPDAPIILVGTKID 121
+ L+ ++ D + +S+ SF V + ++ L + + P++LVGT+
Sbjct: 77 PPE---LQFAAW--VDAVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQ-- 128
Query: 122 LREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180
+ +S N + + +KL+ ++ Y E A + +VF + + V+
Sbjct: 129 --------DAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 16/147 (10%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61
S ++ +VG GKT + + F + +PTV N V V++ +WD
Sbjct: 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRK---VTKGNVTIKIWDI 74
Query: 62 AGQEDYDRL--RPLSYPQTDVFLICYS-----VVSPSSFDNVTSKWYPELKHHCPDAPII 114
GQ + + R V++I + S + N+ K P+L+ P++
Sbjct: 75 GGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK--PQLQ----GIPVL 128
Query: 115 LVGTKIDLREDRETLNLLSEQNLSPVK 141
++G K DL + L+ + NLS ++
Sbjct: 129 VLGNKRDLPNALDEKQLIEKMNLSAIQ 155
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 24/151 (15%)
Query: 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61
S ++ +VG GKT + + F + +PTV N + V++ LWD
Sbjct: 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK---ITKGNVTIKLWDI 74
Query: 62 AGQEDYDRLRPL--SYPQTDVFLICYSV---------VSPSSFDNVTSKWYPELKHHCPD 110
GQ R R + Y + V I Y V S + N+ K P+L+
Sbjct: 75 GGQP---RFRSMWERYCR-GVSAIVYMVDAADQEKIEASKNELHNLLDK--PQLQ----G 124
Query: 111 APIILVGTKIDLREDRETLNLLSEQNLSPVK 141
P++++G K DL + L+ + NLS ++
Sbjct: 125 IPVLVLGNKRDLPGALDEKELIEKMNLSAIQ 155
>pdb|2YZL|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole-
Succinocarboxamide Synthase With Adp From
Methanocaldococcus Jannaschii
pdb|2Z02|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazolesuccinocarboxamide Synthase
Wit Atp From Methanocaldococcus Jannaschii
pdb|2Z02|B Chain B, Crystal Structure Of
Phosphoribosylaminoimidazolesuccinocarboxamide Synthase
Wit Atp From Methanocaldococcus Jannaschii
Length = 242
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 27/99 (27%)
Query: 41 DNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKW 100
D Y P + I V+LGL A +E+ ++++ ++ +V
Sbjct: 131 DEYGDPMLNEDIAVALGL---ATREELNKIKEIALKVNEV-------------------- 167
Query: 101 YPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSP 139
LK + IILV KI++ +DRE NLL +SP
Sbjct: 168 ---LKKLFDEKGIILVDFKIEIGKDREG-NLLVADEISP 202
>pdb|1WNS|A Chain A, Crystal Structure Of Family B Dna Polymerase From
Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1
Length = 774
Score = 29.6 bits (65), Expect = 1.2, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 57 GLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWY---PELKHH-CPDAP 112
GLW+ D+ L YP +I VSP + + K Y P++ H C D P
Sbjct: 395 GLWENIVYLDFRSL----YPS----IIITHNVSPDTLNREGCKEYDVAPQVGHRFCKDFP 446
Query: 113 IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161
+ DL E+R+ + + + P++R + L + RA+K + S
Sbjct: 447 GFIPSLLGDLLEERQKIKKKMKATIDPIER---KLLDYRQRAIKILANS 492
>pdb|1WN7|A Chain A, Crystal Structure Of Archaeal Family B Dna Polymerase
Mutant
Length = 774
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 57 GLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWY---PELKHH-CPDAP 112
GLW+ D+ L YP +I VSP + + K Y P++ H C D P
Sbjct: 395 GLWENIVYLDFRSL----YPS----IIITHNVSPDTLNREGCKEYDVAPQVGHRFCKDFP 446
Query: 113 IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161
+ DL E+R+ + + + P++R + L + RA+K + S
Sbjct: 447 GFIPSLLGDLLEERQKIKKKMKATIDPIER---KLLDYRQRAIKILANS 492
>pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok
Length = 773
Score = 29.3 bits (64), Expect = 1.4, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 57 GLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWY---PELKHH-CPDAP 112
GLW+ DY L YP +I VSP + + + Y P++ H C D P
Sbjct: 395 GLWENIVYLDYKSL----YPS----IIITHNVSPDTLNREGCREYDVAPQVGHRFCKDFP 446
Query: 113 IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158
+ DL E+R+ + + + P++R + L + RA+K +
Sbjct: 447 GFIPSLLGDLLEERQKVKKKMKATVDPIER---KLLDYRQRAIKIL 489
>pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok. Deposition Of Second Native Structure At 2.4
Angstrom
Length = 733
Score = 29.3 bits (64), Expect = 1.4, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 57 GLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWY---PELKHH-CPDAP 112
GLW+ DY L YP +I VSP + + + Y P++ H C D P
Sbjct: 395 GLWENIVYLDYKSL----YPS----IIITHNVSPDTLNREGCREYDVAPQVGHRFCKDFP 446
Query: 113 IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158
+ DL E+R+ + + + P++R + L + RA+K +
Sbjct: 447 GFIPSLLGDLLEERQKVKKKMKATVDPIER---KLLDYRQRAIKIL 489
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 22/145 (15%)
Query: 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66
++ +VG GKT + + F + +PTV N + V++ LWD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK---ITKGNVTIKLWDIGGQP- 87
Query: 67 YDRLRPLSYPQT-DVFLICYSV---------VSPSSFDNVTSKWYPELKHHCPDAPIILV 116
R R + V I Y V S + N+ K P+L+ P++++
Sbjct: 88 --RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK--PQLQ----GIPVLVL 139
Query: 117 GTKIDLREDRETLNLLSEQNLSPVK 141
G K DL + L+ + NLS ++
Sbjct: 140 GNKRDLPGALDEKELIEKMNLSAIQ 164
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLN 130
+ L + T + C S + P + K P++ PDA +++VG+ TL
Sbjct: 190 KKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSG----RYESTLR 245
Query: 131 LLS---EQNLSPVKREQGQKLANKIRAVKYMECSALTQRG 167
L+ QN+ + R + Q + N + A A T+ G
Sbjct: 246 RLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGG 285
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLN 130
+ L + T + C S + P + K P++ PDA +++VG+ TL
Sbjct: 190 KKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSG----RYESTLR 245
Query: 131 LLS---EQNLSPVKREQGQKLANKIRAVKYMECSALTQRG 167
L+ QN+ + R + Q + N + A A T+ G
Sbjct: 246 RLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGG 285
>pdb|2ZS6|A Chain A, Ha3 Subcomponent Of Botulinum Type C Progenitor Toxin
Length = 205
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 9 CVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFT-VDGIPVSLGLWDTA 62
+VGD + +T Y T SF EY+ N A FT IP+ TA
Sbjct: 74 TAIVGDLRIRETATPYYYPTASFNEEYIKNNVQNVFANFTEASEIPIGFEFSKTA 128
>pdb|2ZOE|A Chain A, Ha3 Subcomponent Of Clostridium Botulinum Type C
Progenitor Toxin, Complex With N-Acetylneuramic Acid
Length = 205
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 9 CVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFT-VDGIPVSLGLWDTA 62
+VGD + +T Y T SF EY+ N A FT IP+ TA
Sbjct: 74 TAIVGDLRIRETATPYYYPTASFNEEYIKNNVQNVFANFTEASEIPIGFEFSKTA 128
>pdb|4EN6|A Chain A, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
Clostridium Botulinum Type C Progenitor Toxin In Complex
With Alpha 2-3-Sialyllactose
pdb|4EN7|A Chain A, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
Clostridium Botulinum Type C Progenitor Toxin In Complex
With Alpha 2-3-Sialyllactosamine
pdb|4EN8|A Chain A, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
Clostridium Botulinum Type C Progenitor Toxin In Complex
With Alpha 2-6-Sialyllactose
pdb|4EN9|A Chain A, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
Clostridium Botulinum Type C Progenitor Toxin In Complex
With Alpha 2-6-Sialyllactosamine
Length = 224
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 9 CVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFT-VDGIPVSLGLWDTA 62
+VGD + +T Y T SF EY+ N A FT IP+ TA
Sbjct: 74 TAIVGDLRIRETATPYYYPTASFNEEYIKNNVQNVFANFTEASEIPIGFEFSKTA 128
>pdb|3QOY|A Chain A, Crystal Structure Of Ribosomal Protein L1 From Aquifex
Aeolicus
Length = 242
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 153 RAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVKRRQ 189
R KY+E S L R R +EAV + + E V +R+
Sbjct: 4 RGKKYIEASKLVDRNKRYTLEEAVDLLKKMEEVLQRR 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,063,872
Number of Sequences: 62578
Number of extensions: 256003
Number of successful extensions: 1008
Number of sequences better than 100.0: 316
Number of HSP's better than 100.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 483
Number of HSP's gapped (non-prelim): 318
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)