Query psy10443
Match_columns 195
No_of_seqs 144 out of 1695
Neff 10.9
Searched_HMMs 46136
Date Fri Aug 16 18:18:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01875 RhoG RhoG subfamily. 100.0 1.8E-43 3.9E-48 245.9 21.7 191 4-195 1-191 (191)
2 KOG0084|consensus 100.0 6.3E-43 1.4E-47 232.1 16.1 168 4-184 7-176 (205)
3 KOG0092|consensus 100.0 3.1E-41 6.8E-46 223.2 17.1 169 3-185 2-172 (200)
4 cd04134 Rho3 Rho3 subfamily. 100.0 2.3E-40 5E-45 230.1 22.1 189 7-195 1-189 (189)
5 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 7.7E-40 1.7E-44 225.3 20.5 177 4-180 3-180 (182)
6 cd04131 Rnd Rnd subfamily. Th 100.0 2.6E-39 5.7E-44 222.3 20.9 175 6-180 1-176 (178)
7 cd01874 Cdc42 Cdc42 subfamily. 100.0 3.1E-39 6.8E-44 221.7 20.7 173 7-179 2-174 (175)
8 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.5E-39 5.5E-44 228.1 20.7 177 6-182 1-178 (222)
9 cd04133 Rop_like Rop subfamily 100.0 2.9E-39 6.3E-44 221.2 20.3 173 7-181 2-174 (176)
10 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.1E-39 4.5E-44 229.6 19.7 178 5-182 12-190 (232)
11 KOG0078|consensus 100.0 6.8E-40 1.5E-44 220.7 15.3 167 4-184 10-178 (207)
12 KOG0098|consensus 100.0 6.6E-40 1.4E-44 215.5 14.3 170 1-184 1-172 (216)
13 KOG0094|consensus 100.0 1.3E-39 2.8E-44 215.7 15.8 166 4-183 20-188 (221)
14 cd04121 Rab40 Rab40 subfamily. 100.0 1.1E-38 2.4E-43 220.6 18.9 167 4-184 4-171 (189)
15 cd01871 Rac1_like Rac1-like su 100.0 2.8E-38 6.1E-43 216.8 20.1 173 6-178 1-173 (174)
16 KOG0394|consensus 100.0 3.9E-39 8.5E-44 211.4 14.7 169 4-183 7-181 (210)
17 KOG0080|consensus 100.0 1.2E-38 2.6E-43 204.7 14.0 163 6-182 11-176 (209)
18 cd04144 Ras2 Ras2 subfamily. 100.0 2.8E-38 6E-43 219.9 16.4 174 8-195 1-190 (190)
19 cd04120 Rab12 Rab12 subfamily. 100.0 6.2E-38 1.4E-42 218.7 17.9 163 7-182 1-165 (202)
20 cd04132 Rho4_like Rho4-like su 100.0 1.1E-37 2.4E-42 216.6 18.7 181 7-195 1-187 (187)
21 smart00174 RHO Rho (Ras homolo 100.0 6.1E-37 1.3E-41 210.5 20.2 173 9-181 1-173 (174)
22 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.2E-37 4.8E-42 212.0 17.8 164 5-182 1-166 (172)
23 PTZ00369 Ras-like protein; Pro 100.0 5.1E-37 1.1E-41 213.4 18.8 165 4-182 3-169 (189)
24 KOG0079|consensus 100.0 1.6E-38 3.6E-43 201.4 9.6 162 6-181 8-170 (198)
25 cd04135 Tc10 TC10 subfamily. 100.0 5.2E-36 1.1E-40 205.9 21.2 174 7-180 1-174 (174)
26 KOG0393|consensus 100.0 4.1E-37 8.8E-42 208.2 15.2 181 4-184 2-183 (198)
27 cd04130 Wrch_1 Wrch-1 subfamil 100.0 9E-36 1.9E-40 204.5 20.4 171 7-177 1-171 (173)
28 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.1E-36 8.9E-41 210.8 18.6 163 7-182 1-170 (201)
29 KOG0087|consensus 100.0 1.1E-36 2.3E-41 204.5 13.9 166 5-184 13-180 (222)
30 cd04175 Rap1 Rap1 subgroup. T 100.0 6.3E-36 1.4E-40 203.6 16.9 161 6-180 1-163 (164)
31 KOG0093|consensus 100.0 1.4E-36 3.1E-41 192.3 12.3 166 6-185 21-188 (193)
32 cd04136 Rap_like Rap-like subf 100.0 1.3E-35 2.8E-40 201.8 17.6 160 6-179 1-162 (163)
33 cd04110 Rab35 Rab35 subfamily. 100.0 1.8E-35 3.9E-40 207.1 18.7 164 5-182 5-169 (199)
34 cd04122 Rab14 Rab14 subfamily. 100.0 1.6E-35 3.4E-40 202.1 17.9 162 6-181 2-165 (166)
35 cd01870 RhoA_like RhoA-like su 100.0 8.8E-35 1.9E-39 200.0 20.8 173 7-179 2-174 (175)
36 cd04109 Rab28 Rab28 subfamily. 100.0 2.9E-35 6.3E-40 208.3 18.6 161 7-181 1-167 (215)
37 cd04126 Rab20 Rab20 subfamily. 100.0 3.4E-35 7.3E-40 207.1 18.7 170 7-180 1-190 (220)
38 cd04129 Rho2 Rho2 subfamily. 100.0 1.2E-34 2.5E-39 201.2 20.2 187 6-194 1-187 (187)
39 cd04117 Rab15 Rab15 subfamily. 100.0 5E-35 1.1E-39 198.5 17.7 158 7-178 1-160 (161)
40 cd04128 Spg1 Spg1p. Spg1p (se 100.0 5.2E-35 1.1E-39 201.7 18.0 167 7-183 1-169 (182)
41 cd04176 Rap2 Rap2 subgroup. T 100.0 5.5E-35 1.2E-39 198.8 17.6 160 6-179 1-162 (163)
42 PF00071 Ras: Ras family; Int 100.0 3.6E-35 7.9E-40 199.5 16.5 159 8-180 1-161 (162)
43 PLN03071 GTP-binding nuclear p 100.0 7E-35 1.5E-39 206.5 18.5 163 4-182 11-174 (219)
44 cd04125 RabA_like RabA-like su 100.0 7.7E-35 1.7E-39 202.4 18.2 162 7-182 1-164 (188)
45 cd01873 RhoBTB RhoBTB subfamil 100.0 1.4E-34 3E-39 201.2 19.1 170 6-178 2-194 (195)
46 KOG0086|consensus 100.0 7E-36 1.5E-40 190.6 11.3 163 5-181 8-172 (214)
47 cd04127 Rab27A Rab27a subfamil 100.0 6.2E-35 1.3E-39 201.6 16.9 163 5-181 3-178 (180)
48 cd01865 Rab3 Rab3 subfamily. 100.0 1.9E-34 4.1E-39 196.5 18.2 160 7-180 2-163 (165)
49 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.6E-34 3.4E-39 197.1 17.7 161 6-180 2-164 (166)
50 cd01867 Rab8_Rab10_Rab13_like 100.0 1.7E-34 3.7E-39 197.1 17.8 163 5-181 2-166 (167)
51 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.3E-34 2.9E-39 196.5 17.2 159 6-179 1-161 (162)
52 KOG0095|consensus 100.0 1.5E-35 3.2E-40 188.4 11.0 162 5-180 6-169 (213)
53 cd04112 Rab26 Rab26 subfamily. 100.0 2.5E-34 5.5E-39 200.2 18.1 162 7-182 1-165 (191)
54 cd04140 ARHI_like ARHI subfami 100.0 2.1E-34 4.5E-39 196.3 17.3 159 6-178 1-163 (165)
55 cd04119 RJL RJL (RabJ-Like) su 100.0 2E-34 4.3E-39 196.8 17.1 160 7-180 1-167 (168)
56 cd04103 Centaurin_gamma Centau 100.0 2.1E-34 4.5E-39 194.5 16.9 155 7-178 1-157 (158)
57 cd00877 Ran Ran (Ras-related n 100.0 4.3E-34 9.4E-39 194.7 18.5 159 7-181 1-160 (166)
58 cd04124 RabL2 RabL2 subfamily. 100.0 4.9E-34 1.1E-38 193.7 18.3 159 7-182 1-160 (161)
59 cd04106 Rab23_lke Rab23-like s 100.0 2.5E-34 5.3E-39 195.4 16.6 158 7-178 1-161 (162)
60 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3.4E-34 7.3E-39 195.0 17.3 161 5-179 1-163 (164)
61 smart00173 RAS Ras subfamily o 100.0 2.8E-34 6.2E-39 195.4 16.8 160 7-180 1-162 (164)
62 KOG0091|consensus 100.0 5.3E-35 1.1E-39 188.4 11.8 162 5-180 7-173 (213)
63 cd04116 Rab9 Rab9 subfamily. 100.0 6.5E-34 1.4E-38 194.8 18.0 162 3-178 2-169 (170)
64 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 5.1E-34 1.1E-38 195.0 17.3 161 8-180 2-165 (170)
65 cd04143 Rhes_like Rhes_like su 100.0 6.8E-34 1.5E-38 204.1 18.4 163 7-182 1-173 (247)
66 cd00157 Rho Rho (Ras homology) 100.0 1.5E-33 3.3E-38 193.1 19.3 170 7-177 1-170 (171)
67 cd01864 Rab19 Rab19 subfamily. 100.0 6.9E-34 1.5E-38 193.7 17.2 161 5-178 2-164 (165)
68 cd04142 RRP22 RRP22 subfamily. 100.0 2.4E-33 5.2E-38 195.7 19.3 165 7-184 1-178 (198)
69 cd01868 Rab11_like Rab11-like. 100.0 1.4E-33 3E-38 192.2 17.4 160 6-179 3-164 (165)
70 KOG0088|consensus 100.0 8.6E-35 1.9E-39 186.6 10.5 165 5-183 12-178 (218)
71 cd04111 Rab39 Rab39 subfamily. 100.0 1.3E-33 2.9E-38 199.0 17.3 164 5-182 1-168 (211)
72 cd04177 RSR1 RSR1 subgroup. R 100.0 2.9E-33 6.2E-38 191.2 18.5 162 6-180 1-164 (168)
73 PLN03110 Rab GTPase; Provision 100.0 1.7E-33 3.6E-38 199.3 17.4 163 5-181 11-175 (216)
74 PLN03108 Rab family protein; P 100.0 2.1E-33 4.6E-38 198.0 17.8 168 1-182 1-170 (210)
75 smart00176 RAN Ran (Ras-relate 100.0 1.5E-33 3.2E-38 196.5 16.7 155 12-182 1-156 (200)
76 cd04118 Rab24 Rab24 subfamily. 100.0 3.9E-33 8.5E-38 194.6 18.6 166 7-182 1-168 (193)
77 cd04146 RERG_RasL11_like RERG/ 100.0 2E-33 4.3E-38 191.5 16.3 159 8-180 1-164 (165)
78 cd01866 Rab2 Rab2 subfamily. 100.0 4.2E-33 9E-38 190.4 17.8 162 6-181 4-167 (168)
79 cd01892 Miro2 Miro2 subfamily. 100.0 3.4E-33 7.4E-38 190.8 17.4 164 4-181 2-167 (169)
80 cd04113 Rab4 Rab4 subfamily. 100.0 3.4E-33 7.4E-38 189.6 16.9 158 7-178 1-160 (161)
81 cd04115 Rab33B_Rab33A Rab33B/R 100.0 7.7E-33 1.7E-37 189.4 17.9 161 5-179 1-168 (170)
82 smart00175 RAB Rab subfamily o 100.0 8.8E-33 1.9E-37 188.0 17.4 161 7-181 1-163 (164)
83 cd01860 Rab5_related Rab5-rela 100.0 1.1E-32 2.4E-37 187.4 17.6 160 6-179 1-162 (163)
84 cd04137 RheB Rheb (Ras Homolog 100.0 2E-32 4.4E-37 189.0 17.3 176 7-195 2-180 (180)
85 KOG0395|consensus 100.0 1.3E-32 2.8E-37 190.3 16.0 163 5-181 2-166 (196)
86 cd04149 Arf6 Arf6 subfamily. 100.0 4.1E-33 8.9E-38 190.2 13.1 157 3-177 6-167 (168)
87 KOG0083|consensus 100.0 1.5E-34 3.2E-39 180.5 5.4 159 11-183 2-163 (192)
88 cd01862 Rab7 Rab7 subfamily. 100.0 3.4E-32 7.3E-37 186.5 17.7 163 7-182 1-169 (172)
89 cd01893 Miro1 Miro1 subfamily. 100.0 3E-32 6.5E-37 185.8 16.7 164 7-181 1-165 (166)
90 cd04101 RabL4 RabL4 (Rab-like4 100.0 3.3E-32 7.2E-37 185.3 16.9 159 7-179 1-163 (164)
91 cd04148 RGK RGK subfamily. Th 100.0 5.4E-32 1.2E-36 192.0 18.2 158 7-180 1-163 (221)
92 cd01861 Rab6 Rab6 subfamily. 100.0 6.2E-32 1.4E-36 183.3 17.1 158 7-178 1-160 (161)
93 PLN03118 Rab family protein; P 100.0 7.4E-32 1.6E-36 190.5 18.1 164 5-182 13-179 (211)
94 cd04139 RalA_RalB RalA/RalB su 100.0 7.7E-32 1.7E-36 183.3 17.4 160 7-180 1-162 (164)
95 cd04123 Rab21 Rab21 subfamily. 100.0 1.2E-31 2.7E-36 181.9 17.7 159 7-179 1-161 (162)
96 KOG0081|consensus 100.0 3.2E-34 6.8E-39 184.1 3.9 163 6-182 9-183 (219)
97 cd01863 Rab18 Rab18 subfamily. 100.0 2.5E-31 5.3E-36 180.4 17.9 157 7-178 1-160 (161)
98 PLN00223 ADP-ribosylation fact 100.0 4E-32 8.7E-37 187.3 13.9 161 4-182 15-180 (181)
99 PTZ00133 ADP-ribosylation fact 100.0 7.4E-32 1.6E-36 186.2 13.8 166 3-182 14-180 (182)
100 smart00177 ARF ARF-like small 100.0 7.8E-32 1.7E-36 185.1 13.7 157 4-179 11-173 (175)
101 KOG0097|consensus 100.0 7E-32 1.5E-36 170.4 11.4 164 5-182 10-175 (215)
102 cd00876 Ras Ras family. The R 100.0 2.8E-31 6.1E-36 179.8 15.0 157 8-178 1-159 (160)
103 cd04147 Ras_dva Ras-dva subfam 100.0 7.7E-31 1.7E-35 183.6 17.0 161 8-180 1-163 (198)
104 cd04158 ARD1 ARD1 subfamily. 100.0 2.9E-31 6.2E-36 181.4 14.3 157 8-183 1-164 (169)
105 cd04114 Rab30 Rab30 subfamily. 100.0 2.2E-30 4.8E-35 177.1 18.5 165 1-179 1-168 (169)
106 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 3.3E-31 7.2E-36 183.2 14.3 164 5-184 2-174 (183)
107 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.2E-31 2.6E-36 182.3 11.3 157 8-177 1-163 (164)
108 cd04150 Arf1_5_like Arf1-Arf5- 100.0 3.5E-31 7.6E-36 179.2 13.3 153 7-177 1-158 (159)
109 cd00154 Rab Rab family. Rab G 100.0 1.7E-30 3.7E-35 175.5 15.8 157 7-177 1-159 (159)
110 PTZ00132 GTP-binding nuclear p 100.0 6.6E-30 1.4E-34 181.1 18.5 165 2-182 5-170 (215)
111 cd04154 Arl2 Arl2 subfamily. 100.0 3.8E-30 8.2E-35 176.6 15.0 155 4-177 12-172 (173)
112 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.9E-29 4.1E-34 173.2 15.0 156 3-177 12-173 (174)
113 cd04157 Arl6 Arl6 subfamily. 100.0 1.1E-29 2.4E-34 172.4 12.4 152 8-177 1-161 (162)
114 PF00025 Arf: ADP-ribosylation 100.0 1E-28 2.3E-33 169.3 15.7 159 3-179 11-175 (175)
115 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.2E-28 2.6E-33 171.7 15.7 158 7-178 1-198 (202)
116 cd04161 Arl2l1_Arl13_like Arl2 100.0 9.5E-30 2.1E-34 173.5 9.8 157 8-177 1-166 (167)
117 cd04151 Arl1 Arl1 subfamily. 100.0 4.2E-29 9E-34 169.0 12.5 151 8-177 1-157 (158)
118 cd00879 Sar1 Sar1 subfamily. 100.0 1.3E-28 2.8E-33 171.4 14.8 158 4-179 17-190 (190)
119 cd04160 Arfrp1 Arfrp1 subfamil 100.0 1.8E-28 3.9E-33 167.3 13.9 153 8-177 1-166 (167)
120 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1.6E-28 3.5E-33 166.4 13.2 152 8-177 1-159 (160)
121 smart00178 SAR Sar1p-like memb 100.0 4.8E-28 1E-32 167.5 14.5 168 4-178 15-183 (184)
122 cd00878 Arf_Arl Arf (ADP-ribos 100.0 3.2E-28 7E-33 164.6 13.4 152 8-177 1-157 (158)
123 PLN00023 GTP-binding protein; 100.0 9.8E-28 2.1E-32 174.8 16.3 146 4-156 19-191 (334)
124 KOG0073|consensus 100.0 1.1E-27 2.3E-32 154.7 12.6 164 4-181 14-179 (185)
125 KOG0070|consensus 100.0 4.7E-28 1E-32 160.3 11.0 167 2-182 13-180 (181)
126 KOG4252|consensus 100.0 1.2E-29 2.6E-34 166.3 3.2 163 4-180 18-181 (246)
127 KOG0075|consensus 100.0 9.9E-29 2.2E-33 156.7 7.0 163 5-180 19-182 (186)
128 cd01890 LepA LepA subfamily. 100.0 3E-27 6.6E-32 163.0 13.3 156 8-181 2-178 (179)
129 cd04159 Arl10_like Arl10-like 100.0 4.1E-27 8.9E-32 159.0 13.4 157 8-177 1-158 (159)
130 PTZ00099 rab6; Provisional 99.9 2.5E-26 5.3E-31 157.4 16.2 142 29-184 3-146 (176)
131 cd01897 NOG NOG1 is a nucleola 99.9 5.6E-26 1.2E-30 155.1 15.7 154 8-179 2-167 (168)
132 COG1100 GTPase SAR1 and relate 99.9 3.8E-26 8.1E-31 162.4 15.2 180 4-183 3-188 (219)
133 cd04155 Arl3 Arl3 subfamily. 99.9 4E-26 8.7E-31 156.6 14.2 160 4-177 12-172 (173)
134 TIGR00231 small_GTP small GTP- 99.9 1.2E-25 2.5E-30 151.7 15.0 157 6-176 1-160 (161)
135 cd01898 Obg Obg subfamily. Th 99.9 6E-26 1.3E-30 155.3 13.5 156 8-178 2-169 (170)
136 TIGR02528 EutP ethanolamine ut 99.9 1.5E-26 3.3E-31 153.7 9.8 135 8-176 2-141 (142)
137 cd04171 SelB SelB subfamily. 99.9 9.4E-26 2E-30 153.3 12.5 157 7-177 1-163 (164)
138 PRK15494 era GTPase Era; Provi 99.9 4.3E-25 9.4E-30 165.4 15.3 161 1-182 47-218 (339)
139 PRK12299 obgE GTPase CgtA; Rev 99.9 5.8E-25 1.3E-29 163.7 15.5 162 7-183 159-331 (335)
140 KOG0071|consensus 99.9 2.5E-25 5.5E-30 140.2 11.2 163 4-180 15-178 (180)
141 PRK03003 GTP-binding protein D 99.9 7.6E-25 1.7E-29 171.0 13.8 160 5-180 210-382 (472)
142 TIGR00436 era GTP-binding prot 99.9 2E-24 4.3E-29 157.7 15.1 155 8-182 2-166 (270)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.9E-24 6.4E-29 146.6 14.2 157 8-179 2-165 (168)
144 PF02421 FeoB_N: Ferrous iron 99.9 2.8E-25 6.2E-30 147.1 8.6 147 7-175 1-156 (156)
145 cd01878 HflX HflX subfamily. 99.9 3.3E-24 7.1E-29 150.9 13.2 154 5-179 40-204 (204)
146 cd01879 FeoB Ferrous iron tran 99.9 5.5E-24 1.2E-28 143.8 13.8 147 11-179 1-156 (158)
147 PRK04213 GTP-binding protein; 99.9 8.8E-25 1.9E-29 153.4 10.2 158 4-184 7-196 (201)
148 cd00882 Ras_like_GTPase Ras-li 99.9 6.9E-24 1.5E-28 141.9 13.7 154 11-176 1-156 (157)
149 TIGR03594 GTPase_EngA ribosome 99.9 1E-23 2.2E-28 163.7 16.4 161 5-180 171-344 (429)
150 PF08477 Miro: Miro-like prote 99.9 1.3E-24 2.8E-29 140.2 9.4 114 8-121 1-119 (119)
151 cd01894 EngA1 EngA1 subfamily. 99.9 5.2E-24 1.1E-28 143.7 12.6 146 10-178 1-156 (157)
152 KOG3883|consensus 99.9 3.6E-23 7.7E-28 132.5 15.5 169 4-186 7-181 (198)
153 cd01891 TypA_BipA TypA (tyrosi 99.9 5E-24 1.1E-28 148.8 12.3 148 7-169 3-171 (194)
154 TIGR01393 lepA GTP-binding pro 99.9 7.3E-24 1.6E-28 168.5 14.6 161 7-185 4-185 (595)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.5E-23 3.2E-28 161.6 15.1 151 5-182 202-362 (442)
156 cd01889 SelB_euk SelB subfamil 99.9 5.2E-24 1.1E-28 148.4 10.9 163 7-183 1-189 (192)
157 TIGR02729 Obg_CgtA Obg family 99.9 1.7E-23 3.6E-28 155.8 14.1 157 7-179 158-328 (329)
158 cd00881 GTP_translation_factor 99.9 1E-23 2.2E-28 146.5 12.1 157 8-180 1-187 (189)
159 KOG0076|consensus 99.9 8.4E-25 1.8E-29 142.8 5.8 170 1-187 12-194 (197)
160 PRK03003 GTP-binding protein D 99.9 1.5E-23 3.4E-28 163.7 12.9 153 6-181 38-200 (472)
161 cd01895 EngA2 EngA2 subfamily. 99.9 1.6E-22 3.4E-27 138.5 16.4 156 5-178 1-173 (174)
162 cd04163 Era Era subfamily. Er 99.9 3.5E-23 7.5E-28 140.8 12.7 156 5-178 2-167 (168)
163 cd04105 SR_beta Signal recogni 99.9 2.1E-23 4.7E-28 146.1 11.8 170 8-177 2-202 (203)
164 PRK05291 trmE tRNA modificatio 99.9 3.3E-23 7.2E-28 160.4 13.7 148 5-181 214-371 (449)
165 TIGR00487 IF-2 translation ini 99.9 1.4E-22 3.1E-27 160.5 17.3 154 4-177 85-247 (587)
166 TIGR03156 GTP_HflX GTP-binding 99.9 3.2E-23 6.9E-28 155.6 12.9 150 6-178 189-350 (351)
167 cd01881 Obg_like The Obg-like 99.9 6.5E-23 1.4E-27 140.9 13.0 152 11-178 1-175 (176)
168 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.8E-22 4E-27 136.0 14.2 145 7-179 2-156 (157)
169 PRK15467 ethanolamine utilizat 99.9 7.8E-23 1.7E-27 138.0 11.6 144 8-184 3-151 (158)
170 PRK12297 obgE GTPase CgtA; Rev 99.9 2.9E-22 6.3E-27 152.9 15.5 156 8-182 160-329 (424)
171 PRK05433 GTP-binding protein L 99.9 1.7E-22 3.7E-27 160.9 14.8 165 4-186 5-190 (600)
172 PRK00089 era GTPase Era; Revie 99.9 2.9E-22 6.2E-27 148.2 14.6 162 3-182 2-173 (292)
173 COG2229 Predicted GTPase [Gene 99.9 8.1E-22 1.8E-26 130.6 14.1 158 2-178 6-176 (187)
174 PRK09518 bifunctional cytidyla 99.9 1.5E-22 3.2E-27 164.9 13.1 161 5-181 449-622 (712)
175 PRK00093 GTP-binding protein D 99.9 4.1E-22 8.9E-27 154.9 14.9 150 7-179 2-161 (435)
176 PRK00093 GTP-binding protein D 99.9 4.2E-22 9.1E-27 154.9 14.9 160 5-180 172-344 (435)
177 PRK00454 engB GTP-binding prot 99.9 3.1E-22 6.6E-27 140.0 12.8 161 4-181 22-195 (196)
178 COG1159 Era GTPase [General fu 99.9 3.8E-22 8.2E-27 142.2 13.2 165 1-183 1-175 (298)
179 cd01888 eIF2_gamma eIF2-gamma 99.9 1.9E-22 4.2E-27 141.5 11.7 163 7-182 1-201 (203)
180 TIGR00475 selB selenocysteine- 99.9 3.6E-22 7.9E-27 158.7 13.9 162 7-184 1-170 (581)
181 PF00009 GTP_EFTU: Elongation 99.9 4.3E-22 9.3E-27 138.3 12.6 163 4-180 1-187 (188)
182 TIGR03598 GTPase_YsxC ribosome 99.9 1.2E-22 2.6E-27 140.0 9.7 150 3-169 15-179 (179)
183 KOG0072|consensus 99.9 5.5E-23 1.2E-27 130.3 6.8 165 4-182 16-181 (182)
184 TIGR03594 GTPase_EngA ribosome 99.9 5.7E-22 1.2E-26 154.0 13.8 152 8-182 1-162 (429)
185 CHL00189 infB translation init 99.9 4.8E-22 1E-26 159.8 13.5 161 4-179 242-409 (742)
186 PRK12296 obgE GTPase CgtA; Rev 99.9 1.3E-21 2.8E-26 151.2 15.0 160 7-183 160-343 (500)
187 PRK11058 GTPase HflX; Provisio 99.9 2.5E-21 5.5E-26 148.5 15.0 156 7-181 198-363 (426)
188 PRK05306 infB translation init 99.9 3E-21 6.5E-26 156.5 16.2 161 4-178 288-450 (787)
189 KOG4423|consensus 99.9 4.4E-24 9.6E-29 140.9 -0.2 165 7-183 26-197 (229)
190 TIGR00491 aIF-2 translation in 99.9 3.7E-21 8E-26 152.3 15.5 171 5-179 3-215 (590)
191 PRK12317 elongation factor 1-a 99.9 2.1E-21 4.5E-26 150.3 13.7 160 1-171 1-196 (425)
192 KOG1673|consensus 99.9 2.2E-21 4.7E-26 124.7 11.3 167 5-180 19-186 (205)
193 COG1160 Predicted GTPases [Gen 99.9 5.6E-21 1.2E-25 143.3 15.0 162 5-180 177-351 (444)
194 PRK09554 feoB ferrous iron tra 99.9 1E-20 2.2E-25 154.1 17.2 154 4-179 1-167 (772)
195 KOG0074|consensus 99.9 1E-21 2.2E-26 124.2 8.8 164 4-180 15-179 (185)
196 TIGR00483 EF-1_alpha translati 99.9 4.5E-21 9.8E-26 148.4 13.8 157 3-170 4-197 (426)
197 TIGR00437 feoB ferrous iron tr 99.9 4E-21 8.6E-26 153.0 13.8 145 13-179 1-154 (591)
198 PRK12298 obgE GTPase CgtA; Rev 99.9 6.1E-21 1.3E-25 144.9 14.0 160 8-182 161-335 (390)
199 KOG0096|consensus 99.9 1.1E-21 2.4E-26 130.1 8.0 159 6-180 10-169 (216)
200 cd00880 Era_like Era (E. coli 99.9 1.3E-20 2.7E-25 127.1 13.3 153 11-178 1-162 (163)
201 PRK09518 bifunctional cytidyla 99.9 1E-20 2.2E-25 154.3 14.3 153 6-181 275-437 (712)
202 cd01896 DRG The developmentall 99.9 5.4E-20 1.2E-24 131.4 16.0 150 8-180 2-226 (233)
203 COG1160 Predicted GTPases [Gen 99.9 1.4E-20 2.9E-25 141.3 12.2 151 7-180 4-165 (444)
204 TIGR03680 eif2g_arch translati 99.8 7.4E-21 1.6E-25 146.1 10.9 166 4-182 2-198 (406)
205 cd04167 Snu114p Snu114p subfam 99.8 7.3E-21 1.6E-25 134.5 9.3 112 8-123 2-136 (213)
206 cd01884 EF_Tu EF-Tu subfamily. 99.8 5.9E-20 1.3E-24 127.6 13.3 149 5-168 1-171 (195)
207 KOG1707|consensus 99.8 7.5E-21 1.6E-25 145.4 8.2 168 4-184 7-179 (625)
208 PRK10218 GTP-binding protein; 99.8 1.2E-19 2.5E-24 144.3 15.0 164 5-183 4-198 (607)
209 PRK04000 translation initiatio 99.8 5.4E-20 1.2E-24 141.3 12.4 168 3-183 6-204 (411)
210 COG0486 ThdF Predicted GTPase 99.8 8.5E-20 1.8E-24 137.4 13.0 153 5-182 216-378 (454)
211 TIGR01394 TypA_BipA GTP-bindin 99.8 3.7E-20 8E-25 147.2 11.7 162 8-184 3-195 (594)
212 PRK04004 translation initiatio 99.8 2.2E-19 4.8E-24 142.7 15.8 169 3-178 3-216 (586)
213 PRK10512 selenocysteinyl-tRNA- 99.8 1E-19 2.2E-24 145.4 13.4 159 7-182 1-168 (614)
214 cd04166 CysN_ATPS CysN_ATPS su 99.8 6.3E-20 1.4E-24 129.2 10.9 151 8-171 1-185 (208)
215 cd04168 TetM_like Tet(M)-like 99.8 9.3E-20 2E-24 130.3 11.1 170 8-181 1-236 (237)
216 cd04165 GTPBP1_like GTPBP1-lik 99.8 4.9E-19 1.1E-23 125.5 14.5 164 8-177 1-220 (224)
217 cd01876 YihA_EngB The YihA (En 99.8 9.8E-20 2.1E-24 124.0 10.6 154 8-178 1-169 (170)
218 PF10662 PduV-EutP: Ethanolami 99.8 1.6E-19 3.4E-24 117.2 9.9 136 8-176 3-142 (143)
219 COG0370 FeoB Fe2+ transport sy 99.8 2.7E-19 5.8E-24 140.0 12.4 158 4-183 1-167 (653)
220 PRK12736 elongation factor Tu; 99.8 6.7E-19 1.4E-23 134.8 14.2 166 3-183 9-204 (394)
221 cd04104 p47_IIGP_like p47 (47- 99.8 3.6E-19 7.7E-24 124.4 11.2 172 6-184 1-188 (197)
222 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 6.6E-19 1.4E-23 124.3 12.5 169 8-185 1-181 (232)
223 TIGR00485 EF-Tu translation el 99.8 8.3E-19 1.8E-23 134.5 13.8 149 3-166 9-179 (394)
224 KOG1423|consensus 99.8 4.9E-19 1.1E-23 126.2 11.5 174 4-182 70-273 (379)
225 KOG0462|consensus 99.8 6E-19 1.3E-23 134.3 12.6 172 7-194 61-249 (650)
226 PRK12735 elongation factor Tu; 99.8 1.7E-18 3.7E-23 132.7 15.2 164 4-182 10-205 (396)
227 cd01883 EF1_alpha Eukaryotic e 99.8 3.9E-19 8.4E-24 126.2 9.5 152 8-169 1-194 (219)
228 CHL00071 tufA elongation facto 99.8 3.1E-18 6.7E-23 131.8 14.4 150 3-167 9-180 (409)
229 COG0218 Predicted GTPase [Gene 99.8 3E-18 6.4E-23 116.2 11.1 160 5-181 23-198 (200)
230 cd01885 EF2 EF2 (for archaea a 99.8 2.6E-18 5.7E-23 121.3 10.1 112 8-123 2-138 (222)
231 PRK00049 elongation factor Tu; 99.8 2E-17 4.3E-22 126.8 15.3 164 4-182 10-205 (396)
232 KOG0077|consensus 99.8 1.7E-19 3.7E-24 117.3 2.4 163 4-178 18-191 (193)
233 PLN03127 Elongation factor Tu; 99.8 4E-17 8.7E-22 126.3 15.5 165 4-183 59-255 (447)
234 COG0481 LepA Membrane GTPase L 99.8 1.7E-17 3.6E-22 124.7 12.4 172 6-195 9-201 (603)
235 KOG1489|consensus 99.8 4.8E-17 1E-21 116.7 14.0 154 8-178 198-365 (366)
236 PLN03126 Elongation factor Tu; 99.8 3.5E-17 7.6E-22 127.3 14.4 149 4-167 79-249 (478)
237 PRK00741 prfC peptide chain re 99.7 2.9E-17 6.3E-22 129.3 12.9 118 5-126 9-147 (526)
238 PRK13351 elongation factor G; 99.7 1.4E-17 3E-22 135.9 11.5 118 4-125 6-140 (687)
239 cd04169 RF3 RF3 subfamily. Pe 99.7 2.6E-17 5.6E-22 119.7 11.0 115 7-125 3-138 (267)
240 PRK05124 cysN sulfate adenylyl 99.7 6.1E-17 1.3E-21 126.4 13.1 157 4-171 25-216 (474)
241 KOG3905|consensus 99.7 4E-17 8.8E-22 117.5 11.0 170 6-180 52-290 (473)
242 cd04170 EF-G_bact Elongation f 99.7 9.3E-17 2E-21 117.4 12.8 112 8-125 1-131 (268)
243 cd01850 CDC_Septin CDC/Septin. 99.7 1.4E-16 3.1E-21 116.3 13.6 144 5-163 3-185 (276)
244 COG3596 Predicted GTPase [Gene 99.7 1.3E-17 2.8E-22 117.7 7.8 174 4-183 37-225 (296)
245 PTZ00141 elongation factor 1- 99.7 7.6E-17 1.7E-21 124.9 12.8 159 3-170 4-203 (446)
246 PF09439 SRPRB: Signal recogni 99.7 5.4E-18 1.2E-22 114.8 5.3 120 5-127 2-129 (181)
247 COG0532 InfB Translation initi 99.7 1.3E-16 2.7E-21 122.0 13.0 165 4-179 3-169 (509)
248 PTZ00327 eukaryotic translatio 99.7 7.9E-17 1.7E-21 124.6 11.9 169 2-183 30-236 (460)
249 COG1084 Predicted GTPase [Gene 99.7 9.8E-17 2.1E-21 115.8 11.4 158 7-182 169-338 (346)
250 TIGR00503 prfC peptide chain r 99.7 2E-16 4.4E-21 124.6 13.9 117 4-124 9-146 (527)
251 PLN00043 elongation factor 1-a 99.7 9.4E-17 2E-21 124.4 11.8 158 3-170 4-203 (447)
252 cd01886 EF-G Elongation factor 99.7 5.1E-17 1.1E-21 118.2 9.4 112 8-125 1-131 (270)
253 TIGR02034 CysN sulfate adenyly 99.7 9.5E-17 2.1E-21 123.4 11.2 153 7-170 1-187 (406)
254 cd01899 Ygr210 Ygr210 subfamil 99.7 3.5E-16 7.7E-21 115.9 13.1 81 9-89 1-111 (318)
255 PRK05506 bifunctional sulfate 99.7 1.6E-16 3.4E-21 128.6 11.2 154 4-170 22-211 (632)
256 COG1163 DRG Predicted GTPase [ 99.7 2.8E-15 6.1E-20 108.1 15.9 153 6-180 63-289 (365)
257 TIGR00484 EF-G translation elo 99.7 7.7E-16 1.7E-20 125.6 14.0 115 5-125 9-142 (689)
258 KOG0090|consensus 99.7 1.5E-16 3.2E-21 108.1 7.3 169 5-178 37-237 (238)
259 COG2262 HflX GTPases [General 99.7 2.1E-15 4.5E-20 112.1 13.6 155 6-182 192-358 (411)
260 PF01926 MMR_HSR1: 50S ribosom 99.7 6.1E-16 1.3E-20 99.2 9.1 104 8-119 1-116 (116)
261 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 4.5E-15 9.6E-20 103.7 13.9 164 7-182 1-186 (196)
262 COG4917 EutP Ethanolamine util 99.7 4.6E-16 1E-20 96.8 7.3 137 8-177 3-143 (148)
263 PRK12739 elongation factor G; 99.7 2.5E-15 5.4E-20 122.6 13.6 116 4-125 6-140 (691)
264 COG0536 Obg Predicted GTPase [ 99.7 4.4E-15 9.5E-20 107.9 12.7 162 8-183 161-336 (369)
265 KOG1145|consensus 99.6 4E-15 8.8E-20 113.8 13.1 160 4-178 151-314 (683)
266 PF05783 DLIC: Dynein light in 99.6 1E-14 2.2E-19 112.8 12.9 171 6-181 25-265 (472)
267 PRK00007 elongation factor G; 99.6 1.4E-14 3E-19 118.3 14.2 116 5-126 9-143 (693)
268 KOG1191|consensus 99.6 4.2E-15 9.1E-20 112.4 10.2 165 4-182 266-452 (531)
269 COG5256 TEF1 Translation elong 99.6 9.3E-15 2E-19 108.7 11.3 161 2-170 3-201 (428)
270 PRK09602 translation-associate 99.6 2.9E-14 6.3E-19 108.8 13.7 82 7-88 2-113 (396)
271 PRK12740 elongation factor G; 99.6 7.8E-15 1.7E-19 119.7 10.6 108 12-125 1-127 (668)
272 cd00066 G-alpha G protein alph 99.6 2.4E-14 5.2E-19 106.7 12.3 129 54-182 161-313 (317)
273 PRK09866 hypothetical protein; 99.6 5.4E-14 1.2E-18 110.6 14.3 108 56-177 232-350 (741)
274 KOG1532|consensus 99.6 3E-14 6.5E-19 100.7 11.7 175 4-180 17-264 (366)
275 PRK14845 translation initiatio 99.6 3.3E-14 7.1E-19 118.5 13.6 159 17-179 472-672 (1049)
276 PRK13768 GTPase; Provisional 99.6 9.3E-15 2E-19 105.6 6.9 126 55-180 98-247 (253)
277 smart00275 G_alpha G protein a 99.5 4.3E-14 9.3E-19 106.2 10.1 130 54-183 184-337 (342)
278 TIGR00490 aEF-2 translation el 99.5 4.2E-14 9.2E-19 115.8 8.5 116 5-124 18-152 (720)
279 COG5257 GCD11 Translation init 99.5 7.2E-14 1.6E-18 100.8 8.5 170 5-187 9-209 (415)
280 KOG1490|consensus 99.5 2.3E-14 4.9E-19 108.7 6.2 164 7-183 169-344 (620)
281 smart00010 small_GTPase Small 99.5 1.5E-13 3.3E-18 88.9 7.7 113 7-169 1-115 (124)
282 COG1217 TypA Predicted membran 99.5 1E-12 2.2E-17 99.2 12.5 165 6-185 5-200 (603)
283 PF03029 ATP_bind_1: Conserved 99.5 2E-14 4.2E-19 102.8 3.2 125 55-179 92-236 (238)
284 TIGR00157 ribosome small subun 99.5 5.8E-13 1.3E-17 95.8 10.2 96 65-177 24-120 (245)
285 TIGR00101 ureG urease accessor 99.5 4E-12 8.7E-17 88.7 13.5 100 56-180 94-196 (199)
286 cd01882 BMS1 Bms1. Bms1 is an 99.5 1.6E-12 3.5E-17 92.6 11.5 142 4-165 37-181 (225)
287 COG2895 CysN GTPases - Sulfate 99.4 1.4E-12 3.1E-17 95.3 11.0 159 1-170 1-193 (431)
288 PRK07560 elongation factor EF- 99.4 7.8E-13 1.7E-17 108.7 9.8 116 5-124 19-153 (731)
289 cd01853 Toc34_like Toc34-like 99.4 2.9E-12 6.2E-17 92.2 11.3 120 4-127 29-166 (249)
290 PF04548 AIG1: AIG1 family; I 99.4 4.7E-12 1E-16 89.4 11.9 166 7-183 1-189 (212)
291 TIGR00991 3a0901s02IAP34 GTP-b 99.4 1.7E-12 3.7E-17 94.9 9.5 119 4-125 36-168 (313)
292 KOG3886|consensus 99.4 7.4E-13 1.6E-17 91.4 7.0 164 6-179 4-177 (295)
293 PLN00116 translation elongatio 99.4 5.2E-13 1.1E-17 111.0 7.4 116 4-123 17-163 (843)
294 KOG0705|consensus 99.4 6.3E-13 1.4E-17 101.9 7.0 164 4-184 28-193 (749)
295 KOG1144|consensus 99.4 8.9E-13 1.9E-17 104.3 7.2 174 5-182 474-689 (1064)
296 KOG1707|consensus 99.4 2.1E-11 4.5E-16 94.4 14.3 162 5-183 424-586 (625)
297 KOG0461|consensus 99.4 1.2E-11 2.5E-16 90.5 12.2 172 1-185 1-198 (522)
298 PTZ00258 GTP-binding protein; 99.4 2.4E-11 5.1E-16 92.2 13.7 84 5-88 20-126 (390)
299 PRK09435 membrane ATPase/prote 99.4 1.4E-11 3E-16 91.8 12.0 107 54-181 149-261 (332)
300 PTZ00416 elongation factor 2; 99.4 2E-12 4.4E-17 107.4 8.3 115 5-123 18-157 (836)
301 PF05049 IIGP: Interferon-indu 99.3 1.9E-12 4.1E-17 97.1 6.4 167 5-183 34-221 (376)
302 PF00735 Septin: Septin; Inte 99.3 2.1E-11 4.5E-16 89.3 11.0 118 6-127 4-159 (281)
303 TIGR02836 spore_IV_A stage IV 99.3 7.1E-11 1.5E-15 89.0 13.1 152 6-174 17-231 (492)
304 TIGR00073 hypB hydrogenase acc 99.3 3.8E-11 8.2E-16 84.6 11.0 152 4-178 20-205 (207)
305 KOG3887|consensus 99.3 6E-11 1.3E-15 82.8 11.2 172 8-184 29-206 (347)
306 KOG0082|consensus 99.3 9.8E-11 2.1E-15 86.9 12.6 128 54-183 195-347 (354)
307 COG0050 TufB GTPases - transla 99.3 5.6E-11 1.2E-15 85.1 10.6 170 4-188 10-209 (394)
308 PF00350 Dynamin_N: Dynamin fa 99.3 2.1E-11 4.6E-16 83.1 8.2 62 56-120 103-168 (168)
309 PRK09601 GTP-binding protein Y 99.3 2.4E-10 5.3E-15 85.8 13.8 82 7-88 3-107 (364)
310 KOG1143|consensus 99.3 5E-11 1.1E-15 88.1 9.5 163 6-172 167-380 (591)
311 COG3276 SelB Selenocysteine-sp 99.2 8.5E-11 1.8E-15 88.5 10.2 157 8-180 2-162 (447)
312 KOG0458|consensus 99.2 2E-10 4.4E-15 89.0 12.4 156 5-171 176-373 (603)
313 COG0378 HypB Ni2+-binding GTPa 99.2 5.6E-11 1.2E-15 80.5 8.0 83 77-179 117-200 (202)
314 COG0480 FusA Translation elong 99.2 3.8E-11 8.3E-16 97.0 7.6 117 4-125 8-143 (697)
315 COG4108 PrfC Peptide chain rel 99.2 2.4E-10 5.3E-15 86.0 10.0 117 5-125 11-148 (528)
316 KOG1486|consensus 99.2 2.7E-09 5.9E-14 75.1 14.3 89 5-95 61-157 (364)
317 KOG0468|consensus 99.2 8.1E-11 1.8E-15 92.5 7.3 116 4-123 126-262 (971)
318 TIGR00750 lao LAO/AO transport 99.2 7.1E-10 1.5E-14 82.4 11.3 111 53-180 126-238 (300)
319 cd01855 YqeH YqeH. YqeH is an 99.1 2E-10 4.3E-15 79.9 7.3 95 67-180 24-125 (190)
320 PRK00098 GTPase RsgA; Reviewed 99.1 4.5E-10 9.8E-15 83.3 9.0 86 75-176 78-163 (298)
321 PRK10463 hydrogenase nickel in 99.1 4.5E-10 9.7E-15 81.8 8.2 56 111-178 231-287 (290)
322 smart00053 DYNc Dynamin, GTPas 99.1 7.3E-10 1.6E-14 79.1 8.9 69 55-126 126-208 (240)
323 cd01859 MJ1464 MJ1464. This f 99.1 3.6E-10 7.7E-15 76.1 5.7 93 70-181 5-97 (156)
324 PRK12289 GTPase RsgA; Reviewed 99.1 1.2E-09 2.6E-14 82.4 8.9 96 66-178 78-173 (352)
325 PF03308 ArgK: ArgK protein; 99.0 8.6E-10 1.9E-14 78.4 7.0 101 56-179 124-229 (266)
326 COG0012 Predicted GTPase, prob 99.0 7.7E-09 1.7E-13 77.0 12.1 83 6-88 2-108 (372)
327 TIGR00993 3a0901s04IAP86 chlor 99.0 2.3E-09 5E-14 85.4 9.6 117 6-126 118-252 (763)
328 KOG2486|consensus 99.0 2.6E-10 5.6E-15 81.1 3.9 163 4-178 134-314 (320)
329 KOG2655|consensus 99.0 1.6E-08 3.5E-13 75.4 13.5 119 5-127 20-175 (366)
330 COG5019 CDC3 Septin family pro 99.0 4.3E-09 9.3E-14 77.9 10.3 121 4-128 21-180 (373)
331 cd01854 YjeQ_engC YjeQ/EngC. 99.0 6.3E-09 1.4E-13 76.8 11.4 87 73-177 74-161 (287)
332 COG1703 ArgK Putative periplas 99.0 1.7E-09 3.7E-14 78.0 7.6 105 56-180 146-254 (323)
333 TIGR03597 GTPase_YqeH ribosome 99.0 2.3E-09 5.1E-14 81.5 7.4 96 64-178 50-151 (360)
334 cd01900 YchF YchF subfamily. 99.0 1.4E-09 3.1E-14 79.1 5.8 80 9-88 1-103 (274)
335 KOG1547|consensus 99.0 1.1E-08 2.4E-13 71.6 9.7 158 5-177 45-240 (336)
336 COG5258 GTPBP1 GTPase [General 98.9 1.1E-08 2.4E-13 76.1 9.9 167 4-174 115-333 (527)
337 KOG0410|consensus 98.9 4.2E-09 9.1E-14 76.7 6.5 148 7-181 179-342 (410)
338 cd01858 NGP_1 NGP-1. Autoanti 98.9 1.1E-08 2.3E-13 69.0 8.0 91 73-179 4-94 (157)
339 KOG0463|consensus 98.9 5E-09 1.1E-13 77.9 6.8 161 6-171 133-349 (641)
340 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 5.4E-09 1.2E-13 69.2 6.0 52 8-64 85-138 (141)
341 PRK12288 GTPase RsgA; Reviewed 98.8 2.3E-08 4.9E-13 75.5 9.0 88 76-178 119-206 (347)
342 KOG0460|consensus 98.8 5E-08 1.1E-12 71.6 10.2 171 3-187 51-252 (449)
343 cd01858 NGP_1 NGP-1. Autoanti 98.7 3.1E-08 6.7E-13 66.8 6.2 54 5-63 101-156 (157)
344 cd04178 Nucleostemin_like Nucl 98.7 3.5E-08 7.6E-13 67.3 6.4 54 5-63 116-171 (172)
345 cd01849 YlqF_related_GTPase Yl 98.7 8.9E-08 1.9E-12 64.4 7.9 84 79-179 1-84 (155)
346 KOG0448|consensus 98.7 2.2E-07 4.9E-12 73.8 10.7 117 5-125 108-276 (749)
347 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 5.1E-08 1.1E-12 64.5 6.2 87 74-177 8-105 (141)
348 cd01856 YlqF YlqF. Proteins o 98.7 5.9E-08 1.3E-12 66.3 6.3 55 5-64 114-170 (171)
349 KOG0466|consensus 98.7 8.7E-09 1.9E-13 74.5 2.1 163 4-184 36-245 (466)
350 KOG1487|consensus 98.7 3E-07 6.5E-12 65.3 9.2 88 7-96 60-155 (358)
351 KOG0465|consensus 98.6 7.5E-08 1.6E-12 75.5 6.6 116 7-126 40-172 (721)
352 TIGR03596 GTPase_YlqF ribosome 98.6 1.1E-07 2.4E-12 70.0 7.0 55 5-64 117-173 (276)
353 cd01859 MJ1464 MJ1464. This f 98.6 1.2E-07 2.5E-12 63.9 6.5 56 5-63 100-155 (156)
354 KOG0099|consensus 98.6 6.9E-08 1.5E-12 68.5 5.3 129 54-183 202-372 (379)
355 PF00503 G-alpha: G-protein al 98.6 9.7E-07 2.1E-11 68.2 12.1 125 55-179 237-389 (389)
356 TIGR00092 GTP-binding protein 98.6 1.4E-07 3.1E-12 71.2 7.1 82 7-88 3-108 (368)
357 cd01856 YlqF YlqF. Proteins o 98.6 2.2E-07 4.7E-12 63.6 7.4 89 71-180 13-101 (171)
358 TIGR03596 GTPase_YlqF ribosome 98.6 2E-07 4.3E-12 68.6 7.4 92 71-183 15-106 (276)
359 KOG0467|consensus 98.6 1.9E-07 4.2E-12 75.0 7.3 115 4-122 7-136 (887)
360 COG5192 BMS1 GTP-binding prote 98.6 4.7E-07 1E-11 71.0 8.8 142 4-164 67-210 (1077)
361 PRK09563 rbgA GTPase YlqF; Rev 98.6 2.2E-07 4.8E-12 68.7 6.5 56 5-65 120-177 (287)
362 cd01855 YqeH YqeH. YqeH is an 98.5 1.1E-07 2.4E-12 66.2 4.5 25 6-30 127-151 (190)
363 PRK13796 GTPase YqeH; Provisio 98.5 7.3E-07 1.6E-11 68.1 9.2 82 78-178 70-157 (365)
364 TIGR03348 VI_IcmF type VI secr 98.5 3.7E-07 8E-12 79.2 7.9 113 9-125 114-258 (1169)
365 KOG1954|consensus 98.5 3.2E-07 7E-12 68.3 6.4 116 8-126 60-227 (532)
366 KOG1491|consensus 98.5 1.4E-07 2.9E-12 69.4 3.9 85 5-89 19-126 (391)
367 PRK14974 cell division protein 98.5 2.2E-07 4.8E-12 69.7 5.2 94 54-172 223-322 (336)
368 COG1618 Predicted nucleotide k 98.5 1.7E-05 3.6E-10 52.6 13.2 57 4-62 3-59 (179)
369 PRK09563 rbgA GTPase YlqF; Rev 98.5 5E-07 1.1E-11 66.8 6.9 91 71-182 18-108 (287)
370 COG1161 Predicted GTPases [Gen 98.5 4.1E-07 9E-12 68.2 6.2 55 5-64 131-187 (322)
371 cd01849 YlqF_related_GTPase Yl 98.4 6.4E-07 1.4E-11 60.2 6.0 54 5-63 99-154 (155)
372 PF09547 Spore_IV_A: Stage IV 98.4 2.1E-05 4.6E-10 60.0 14.5 152 6-174 17-231 (492)
373 PF03193 DUF258: Protein of un 98.4 2.6E-07 5.7E-12 61.8 3.8 23 7-29 36-58 (161)
374 PRK10416 signal recognition pa 98.4 8.7E-06 1.9E-10 61.0 11.3 142 5-171 113-301 (318)
375 KOG1534|consensus 98.4 1.7E-06 3.6E-11 59.7 6.8 71 110-180 164-251 (273)
376 cd03112 CobW_like The function 98.4 1.2E-06 2.7E-11 59.0 6.2 21 9-29 3-23 (158)
377 KOG0085|consensus 98.4 3.6E-07 7.8E-12 63.9 3.2 129 53-182 198-351 (359)
378 PRK12288 GTPase RsgA; Reviewed 98.3 1.1E-06 2.4E-11 66.5 5.5 22 9-30 208-229 (347)
379 PRK01889 GTPase RsgA; Reviewed 98.3 7.6E-06 1.6E-10 62.4 9.9 84 75-176 110-193 (356)
380 TIGR00064 ftsY signal recognit 98.3 2.8E-06 6E-11 62.3 7.0 94 53-171 154-259 (272)
381 KOG0464|consensus 98.3 7.3E-08 1.6E-12 72.7 -1.4 116 7-126 38-170 (753)
382 COG1162 Predicted GTPases [Gen 98.3 1.5E-05 3.3E-10 58.4 10.0 99 65-178 67-165 (301)
383 cd01851 GBP Guanylate-binding 98.3 3.2E-06 6.9E-11 60.3 6.2 87 5-91 6-105 (224)
384 KOG0447|consensus 98.3 7.6E-06 1.6E-10 64.2 8.6 69 55-125 413-494 (980)
385 TIGR03597 GTPase_YqeH ribosome 98.2 1.9E-06 4.2E-11 65.7 5.3 109 7-125 155-281 (360)
386 cd01854 YjeQ_engC YjeQ/EngC. 98.2 2.4E-06 5.3E-11 63.2 5.1 24 7-30 162-185 (287)
387 PF06858 NOG1: Nucleolar GTP-b 98.2 5E-06 1.1E-10 45.1 4.8 43 78-121 14-58 (58)
388 KOG3859|consensus 98.2 1.4E-05 2.9E-10 57.7 8.1 120 5-128 41-194 (406)
389 TIGR00157 ribosome small subun 98.2 2.7E-06 5.8E-11 61.5 4.7 22 8-29 122-143 (245)
390 PRK12289 GTPase RsgA; Reviewed 98.2 2.7E-06 5.9E-11 64.4 4.9 22 8-29 174-195 (352)
391 KOG3929|consensus 98.2 1E-06 2.2E-11 62.6 2.1 149 4-163 43-235 (363)
392 KOG0469|consensus 98.2 4.9E-06 1.1E-10 64.5 5.9 119 1-123 13-163 (842)
393 KOG0459|consensus 98.1 9.7E-06 2.1E-10 61.2 6.8 162 4-173 77-279 (501)
394 PRK13796 GTPase YqeH; Provisio 98.1 3.7E-06 8.1E-11 64.3 4.7 24 6-29 160-183 (365)
395 KOG4273|consensus 98.1 9.6E-05 2.1E-09 52.6 10.9 170 7-180 5-222 (418)
396 PRK00098 GTPase RsgA; Reviewed 98.1 5.8E-06 1.3E-10 61.6 5.1 24 7-30 165-188 (298)
397 KOG1533|consensus 98.1 2.2E-05 4.8E-10 55.2 7.2 119 56-177 99-250 (290)
398 TIGR01425 SRP54_euk signal rec 98.1 1.1E-05 2.4E-10 62.4 6.3 23 5-27 99-121 (429)
399 cd03114 ArgK-like The function 98.1 2.2E-05 4.8E-10 52.3 6.7 58 53-121 91-148 (148)
400 COG1162 Predicted GTPases [Gen 98.0 6.8E-06 1.5E-10 60.2 4.3 22 8-29 166-187 (301)
401 cd03110 Fer4_NifH_child This p 98.0 0.00012 2.7E-09 50.3 10.1 85 52-158 91-175 (179)
402 PRK00771 signal recognition pa 98.0 9.3E-06 2E-10 63.2 4.8 24 5-28 94-117 (437)
403 PF00448 SRP54: SRP54-type pro 98.0 1.1E-05 2.4E-10 56.3 4.5 23 6-28 1-23 (196)
404 PRK13695 putative NTPase; Prov 98.0 0.00014 3.1E-09 49.8 9.9 22 7-28 1-22 (174)
405 COG3523 IcmF Type VI protein s 97.9 4.4E-05 9.6E-10 65.6 7.4 116 10-126 129-272 (1188)
406 COG3640 CooC CO dehydrogenase 97.8 0.00018 3.9E-09 50.8 8.4 49 72-123 150-198 (255)
407 PRK14722 flhF flagellar biosyn 97.8 0.00016 3.6E-09 55.2 8.9 24 6-29 137-160 (374)
408 PRK11889 flhF flagellar biosyn 97.8 4.6E-05 9.9E-10 58.3 5.7 24 5-28 240-263 (436)
409 TIGR00959 ffh signal recogniti 97.8 7.9E-05 1.7E-09 58.0 6.6 23 5-27 98-120 (428)
410 PRK14721 flhF flagellar biosyn 97.8 0.00013 2.8E-09 56.6 7.7 23 6-28 191-213 (420)
411 PRK10867 signal recognition pa 97.8 0.00012 2.6E-09 57.0 7.5 23 5-27 99-121 (433)
412 PRK11537 putative GTP-binding 97.7 0.00037 8.1E-09 52.4 9.5 21 9-29 7-27 (318)
413 PRK05480 uridine/cytidine kina 97.7 3.3E-05 7.2E-10 54.6 3.7 29 1-29 1-29 (209)
414 COG0523 Putative GTPases (G3E 97.7 0.0014 2.9E-08 49.4 12.1 21 9-29 4-24 (323)
415 cd04178 Nucleostemin_like Nucl 97.7 0.00023 5E-09 48.7 7.3 46 79-126 1-46 (172)
416 PRK12727 flagellar biosynthesi 97.7 0.00014 3E-09 57.7 6.9 23 6-28 350-372 (559)
417 PF13207 AAA_17: AAA domain; P 97.7 3E-05 6.6E-10 49.7 2.8 22 8-29 1-22 (121)
418 KOG1424|consensus 97.7 4.5E-05 9.9E-10 59.3 4.1 54 6-64 314-369 (562)
419 cd03115 SRP The signal recogni 97.7 0.00013 2.9E-09 49.9 6.0 66 54-125 83-154 (173)
420 PF03266 NTPase_1: NTPase; In 97.7 5.2E-05 1.1E-09 51.6 3.7 52 8-61 1-52 (168)
421 PRK10751 molybdopterin-guanine 97.7 5E-05 1.1E-09 51.7 3.5 29 1-29 1-29 (173)
422 PRK08118 topology modulation p 97.7 3.8E-05 8.3E-10 52.2 2.9 22 8-29 3-24 (167)
423 TIGR00235 udk uridine kinase. 97.7 5.2E-05 1.1E-09 53.5 3.6 28 1-28 1-28 (207)
424 PRK06995 flhF flagellar biosyn 97.6 0.0005 1.1E-08 54.3 8.9 22 7-28 257-278 (484)
425 PRK12726 flagellar biosynthesi 97.6 0.00025 5.3E-09 54.1 6.9 23 6-28 206-228 (407)
426 PRK07261 topology modulation p 97.6 5.2E-05 1.1E-09 51.8 2.9 22 8-29 2-23 (171)
427 KOG2485|consensus 97.6 6.9E-05 1.5E-09 54.9 3.5 25 5-29 142-166 (335)
428 COG0563 Adk Adenylate kinase a 97.6 5.2E-05 1.1E-09 52.1 2.8 23 7-29 1-23 (178)
429 cd02038 FleN-like FleN is a me 97.6 0.00037 8E-09 45.9 6.7 106 11-123 5-110 (139)
430 PRK14723 flhF flagellar biosyn 97.6 0.00034 7.4E-09 58.0 7.6 23 7-29 186-208 (767)
431 PF13671 AAA_33: AAA domain; P 97.6 6.3E-05 1.4E-09 49.6 2.8 20 9-28 2-21 (143)
432 KOG2484|consensus 97.6 9.5E-05 2.1E-09 55.9 3.8 57 4-64 250-307 (435)
433 COG1419 FlhF Flagellar GTP-bin 97.6 0.00072 1.6E-08 51.7 8.5 24 6-29 203-226 (407)
434 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.00063 1.4E-08 41.4 6.8 69 9-90 2-71 (99)
435 PF13521 AAA_28: AAA domain; P 97.5 6.7E-05 1.5E-09 50.8 2.4 22 8-29 1-22 (163)
436 PRK05703 flhF flagellar biosyn 97.5 0.00053 1.2E-08 53.6 7.5 21 8-28 223-243 (424)
437 PF13555 AAA_29: P-loop contai 97.5 0.00012 2.5E-09 40.8 2.8 22 8-29 25-46 (62)
438 PRK14530 adenylate kinase; Pro 97.5 0.00011 2.4E-09 52.1 3.3 21 8-28 5-25 (215)
439 KOG0780|consensus 97.5 5.8E-05 1.3E-09 56.9 1.9 25 4-28 99-123 (483)
440 PRK14737 gmk guanylate kinase; 97.5 0.00018 3.9E-09 49.9 4.2 25 5-29 3-27 (186)
441 cd02019 NK Nucleoside/nucleoti 97.5 0.00011 2.5E-09 42.1 2.7 21 9-29 2-22 (69)
442 PTZ00088 adenylate kinase 1; P 97.4 0.00014 3.1E-09 52.0 3.4 29 1-29 1-29 (229)
443 PRK14738 gmk guanylate kinase; 97.4 0.00029 6.2E-09 49.7 4.7 25 5-29 12-36 (206)
444 PRK12723 flagellar biosynthesi 97.4 0.00089 1.9E-08 51.6 7.6 24 5-28 173-196 (388)
445 PRK08233 hypothetical protein; 97.4 0.00017 3.7E-09 49.6 3.4 26 4-29 1-26 (182)
446 PRK14527 adenylate kinase; Pro 97.4 0.00019 4.1E-09 50.0 3.6 28 1-28 1-28 (191)
447 cd00009 AAA The AAA+ (ATPases 97.4 0.00067 1.5E-08 44.4 6.2 25 6-30 19-43 (151)
448 COG0194 Gmk Guanylate kinase [ 97.4 0.00026 5.7E-09 48.3 4.0 26 5-30 3-28 (191)
449 PF04665 Pox_A32: Poxvirus A32 97.4 0.00017 3.7E-09 51.6 3.2 26 4-29 11-36 (241)
450 PRK06217 hypothetical protein; 97.4 0.00017 3.8E-09 49.8 3.0 23 7-29 2-24 (183)
451 TIGR02475 CobW cobalamin biosy 97.4 0.0022 4.7E-08 48.8 9.0 21 9-29 7-27 (341)
452 COG1126 GlnQ ABC-type polar am 97.3 0.00025 5.4E-09 49.6 3.5 24 7-30 29-52 (240)
453 COG0541 Ffh Signal recognition 97.3 0.00017 3.6E-09 55.4 2.8 25 4-28 98-122 (451)
454 PF13238 AAA_18: AAA domain; P 97.3 0.00019 4.1E-09 46.3 2.8 21 9-29 1-21 (129)
455 COG1136 SalX ABC-type antimicr 97.3 0.0002 4.3E-09 50.7 2.8 22 8-29 33-54 (226)
456 PF00004 AAA: ATPase family as 97.3 0.00021 4.5E-09 46.3 2.7 21 9-29 1-21 (132)
457 PF00005 ABC_tran: ABC transpo 97.3 0.00024 5.3E-09 46.5 3.0 23 7-29 12-34 (137)
458 PRK03839 putative kinase; Prov 97.3 0.00021 4.6E-09 49.2 2.8 22 8-29 2-23 (180)
459 cd00071 GMPK Guanosine monopho 97.3 0.00025 5.3E-09 46.6 2.8 21 9-29 2-22 (137)
460 PRK06731 flhF flagellar biosyn 97.3 0.00074 1.6E-08 49.5 5.5 23 6-28 75-97 (270)
461 COG1116 TauB ABC-type nitrate/ 97.3 0.00025 5.4E-09 50.6 2.8 22 8-29 31-52 (248)
462 PF03205 MobB: Molybdopterin g 97.2 0.00024 5.2E-09 46.9 2.6 22 8-29 2-23 (140)
463 smart00382 AAA ATPases associa 97.2 0.00032 6.9E-09 45.6 3.0 25 7-31 3-27 (148)
464 PRK10078 ribose 1,5-bisphospho 97.2 0.00031 6.8E-09 48.7 3.1 22 8-29 4-25 (186)
465 KOG2423|consensus 97.2 0.0022 4.7E-08 48.9 7.5 87 75-177 211-297 (572)
466 TIGR02322 phosphon_PhnN phosph 97.2 0.0003 6.4E-09 48.4 2.7 22 8-29 3-24 (179)
467 PRK14532 adenylate kinase; Pro 97.2 0.00033 7.2E-09 48.6 2.8 22 8-29 2-23 (188)
468 PF11111 CENP-M: Centromere pr 97.2 0.032 7E-07 37.8 12.0 138 6-179 15-152 (176)
469 PRK13949 shikimate kinase; Pro 97.2 0.00035 7.7E-09 47.6 2.9 21 8-28 3-23 (169)
470 PF07728 AAA_5: AAA domain (dy 97.2 0.00036 7.7E-09 45.9 2.8 22 8-29 1-22 (139)
471 PLN02674 adenylate kinase 97.2 0.00041 8.8E-09 50.0 3.2 26 4-29 29-54 (244)
472 PLN02200 adenylate kinase fami 97.2 0.00053 1.1E-08 49.3 3.8 24 5-28 42-65 (234)
473 PTZ00301 uridine kinase; Provi 97.2 0.00045 9.7E-09 48.8 3.3 25 4-28 1-25 (210)
474 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00035 7.7E-09 48.3 2.8 22 7-28 4-25 (188)
475 TIGR03263 guanyl_kin guanylate 97.1 0.00038 8.2E-09 47.9 2.9 22 8-29 3-24 (180)
476 COG1936 Predicted nucleotide k 97.1 0.00038 8.2E-09 46.9 2.7 22 7-28 1-22 (180)
477 PRK06547 hypothetical protein; 97.1 0.00048 1.1E-08 47.1 3.3 26 4-29 13-38 (172)
478 PRK14531 adenylate kinase; Pro 97.1 0.00043 9.4E-09 47.8 3.1 23 7-29 3-25 (183)
479 KOG2423|consensus 97.1 0.00069 1.5E-08 51.5 4.3 85 3-94 304-391 (572)
480 KOG3347|consensus 97.1 0.00033 7.2E-09 46.0 2.3 25 4-28 5-29 (176)
481 PRK05541 adenylylsulfate kinas 97.1 0.00052 1.1E-08 47.1 3.4 26 4-29 5-30 (176)
482 PRK01889 GTPase RsgA; Reviewed 97.1 0.00059 1.3E-08 52.2 4.0 23 7-29 196-218 (356)
483 COG0552 FtsY Signal recognitio 97.1 0.0016 3.4E-08 48.6 5.9 26 4-29 137-162 (340)
484 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00045 9.7E-09 43.1 2.7 21 7-27 16-36 (107)
485 PRK00625 shikimate kinase; Pro 97.1 0.00045 9.7E-09 47.3 2.9 21 8-28 2-22 (173)
486 COG1161 Predicted GTPases [Gen 97.1 0.00059 1.3E-08 51.4 3.7 94 60-173 16-110 (322)
487 PRK05057 aroK shikimate kinase 97.1 0.00053 1.1E-08 46.9 3.2 24 6-29 4-27 (172)
488 TIGR00150 HI0065_YjeE ATPase, 97.1 0.0012 2.5E-08 43.0 4.5 23 7-29 23-45 (133)
489 cd01428 ADK Adenylate kinase ( 97.1 0.00042 9.1E-09 48.2 2.6 22 8-29 1-22 (194)
490 cd02023 UMPK Uridine monophosp 97.1 0.00046 9.9E-09 48.3 2.7 21 9-29 2-22 (198)
491 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00047 1E-08 47.6 2.6 21 9-29 2-22 (183)
492 COG3840 ThiQ ABC-type thiamine 97.0 0.00057 1.2E-08 46.6 2.8 23 8-30 27-49 (231)
493 cd02042 ParA ParA and ParB of 97.0 0.0024 5.2E-08 39.6 5.6 78 9-97 2-80 (104)
494 PF13401 AAA_22: AAA domain; P 97.0 0.00048 1E-08 44.6 2.5 23 7-29 5-27 (131)
495 PRK15453 phosphoribulokinase; 97.0 0.00073 1.6E-08 49.5 3.6 26 3-28 2-27 (290)
496 PRK00300 gmk guanylate kinase; 97.0 0.00071 1.5E-08 47.6 3.4 25 5-29 4-28 (205)
497 COG3638 ABC-type phosphate/pho 97.0 0.00056 1.2E-08 48.5 2.8 21 8-28 32-52 (258)
498 PF02367 UPF0079: Uncharacteri 97.0 0.0021 4.5E-08 41.3 5.1 23 7-29 16-38 (123)
499 PRK02496 adk adenylate kinase; 97.0 0.00069 1.5E-08 46.8 3.2 22 7-28 2-23 (184)
500 TIGR01351 adk adenylate kinase 97.0 0.00052 1.1E-08 48.5 2.6 21 8-28 1-21 (210)
No 1
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.8e-43 Score=245.92 Aligned_cols=191 Identities=64% Similarity=1.141 Sum_probs=165.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
|+.+||+++|++|||||||+.+|..+.|..++.||.+..+...+.+++..+.+++||++|+++|+.++..+++++|++|+
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 36799999999999999999999999999999999987776667789999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||++++++++.+...|...+....+++|+++|+||+|+.+.........+...+.+..++++.+++.++.++++++||+
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 99999999999997568887776667899999999999976544333333444456778889999999987799999999
Q ss_pred CcccHHHHHHHHHHHHcCCCccccCCCceeeC
Q psy10443 164 TQRGLRQVFDEAVRAVLRPEPVKRRQRKCVII 195 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~~~~~~~~~~c~~~ 195 (195)
+|.|++++|.++++.+..+...+ ++++|.+|
T Consensus 161 ~g~~v~e~f~~l~~~~~~~~~~~-~~~~c~~~ 191 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLNPTPIK-DTKSCVLL 191 (191)
T ss_pred CCCCHHHHHHHHHHHHhcccccc-CCCCceeC
Confidence 99999999999999998876544 34569875
No 2
>KOG0084|consensus
Probab=100.00 E-value=6.3e-43 Score=232.12 Aligned_cols=168 Identities=28% Similarity=0.557 Sum_probs=154.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
..-|||+++|++|||||+|+.||..+.|++.+..|.+..+ ...+.++++.+++++|||+||++|+++..+||++|+|+|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 3568999999999999999999999999999999997777 467889999999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||+++.+||..+.. |+..++++. +++|.++|+||+|+.+. +.++.++++.|+..++...++++|
T Consensus 87 ~vyDiT~~~SF~~v~~-Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~------------~~v~~~~a~~fa~~~~~~~f~ETS 153 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKR-WIQEIDRYASENVPKLLVGNKCDLTEK------------RVVSTEEAQEFADELGIPIFLETS 153 (205)
T ss_pred EEEEcccHHHhhhHHH-HHHHhhhhccCCCCeEEEeeccccHhh------------eecCHHHHHHHHHhcCCcceeecc
Confidence 9999999999999985 999999885 67899999999999887 679999999999999943399999
Q ss_pred cCCcccHHHHHHHHHHHHcCCCc
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
|+++.|+++.|..+...+.+...
T Consensus 154 AK~~~NVe~~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 154 AKDSTNVEDAFLTLAKELKQRKG 176 (205)
T ss_pred cCCccCHHHHHHHHHHHHHHhcc
Confidence 99999999999999988865543
No 3
>KOG0092|consensus
Probab=100.00 E-value=3.1e-41 Score=223.22 Aligned_cols=169 Identities=30% Similarity=0.572 Sum_probs=154.8
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
....+||+++|+.+||||||+.||..+.|.+...||++..+ +....+++..++|.+|||+||++|+++-+.|+|+++++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 45789999999999999999999999999888888886655 67888899999999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
|+|||+++.+||..+.+ |...+.+.. +++-+.++|||+|+.+. |.+..+++..++...+ ..++++
T Consensus 82 ivvYDit~~~SF~~aK~-WvkeL~~~~~~~~vialvGNK~DL~~~------------R~V~~~ea~~yAe~~g-ll~~ET 147 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKN-WVKELQRQASPNIVIALVGNKADLLER------------REVEFEEAQAYAESQG-LLFFET 147 (200)
T ss_pred EEEEecccHHHHHHHHH-HHHHHHhhCCCCeEEEEecchhhhhhc------------ccccHHHHHHHHHhcC-CEEEEE
Confidence 99999999999999996 999998875 56888889999999986 6699999999999998 789999
Q ss_pred ccCCcccHHHHHHHHHHHHcCCCcc
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
||++|.|++++|..|.+.++.....
T Consensus 148 SAKTg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 148 SAKTGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred ecccccCHHHHHHHHHHhccCcccc
Confidence 9999999999999999999876654
No 4
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.3e-40 Score=230.11 Aligned_cols=189 Identities=46% Similarity=0.820 Sum_probs=163.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
.||+++|++|||||||+++|..+.+...+.||....+.....+++..+.+.+||++|++.+..++..+++++|++|+|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 38999999999999999999999998888899877776667778888999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR 166 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (195)
++++++++.+...|+..+....++.|+++|+||+|+.................+..++...++...+.++++++||++|.
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 160 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR 160 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence 99999999887668888887778899999999999977654433333333334667788888888887789999999999
Q ss_pred cHHHHHHHHHHHHcCCCccccCCCceeeC
Q psy10443 167 GLRQVFDEAVRAVLRPEPVKRRQRKCVII 195 (195)
Q Consensus 167 ~v~~~~~~l~~~~~~~~~~~~~~~~c~~~ 195 (195)
|++++|.++.+.+..+++..+..+.|.||
T Consensus 161 ~v~e~f~~l~~~~~~~~~~~~~~~~~~~~ 189 (189)
T cd04134 161 GVNEAFTEAARVALNVRPPHPHSSACTIA 189 (189)
T ss_pred CHHHHHHHHHHHHhcccccCcCCCcceeC
Confidence 99999999999999988888888889886
No 5
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=7.7e-40 Score=225.32 Aligned_cols=177 Identities=45% Similarity=0.833 Sum_probs=153.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
...+||+++|++|||||||+++|..+.+..++.||....+...+.+++..+.+++||++|+++|..++..+++++|++|+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 46789999999999999999999999999999999988777778889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||++++++++.+...|...+....++.|+++|+||+|+...............+.++.++++++++.+++++|++|||+
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk 162 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 162 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcC
Confidence 99999999999985569999988888999999999999864322111111112245888999999999996689999999
Q ss_pred Cccc-HHHHHHHHHHHHc
Q psy10443 164 TQRG-LRQVFDEAVRAVL 180 (195)
Q Consensus 164 ~~~~-v~~~~~~l~~~~~ 180 (195)
+|.| ++++|..+++.++
T Consensus 163 ~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 163 QSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 9998 9999999998654
No 6
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.6e-39 Score=222.28 Aligned_cols=175 Identities=45% Similarity=0.824 Sum_probs=150.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
++||+++|++|||||||+++|..+.++..+.||....+...+.+++..+.+++||++|++.|..+++.+++++|++|+||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 47999999999999999999999999999999998777777788999999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
|+++++|++.+...|...+....++.|+++|+||+|+...............+.+..++++++++.++..+++++||++|
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~ 160 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTS 160 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcC
Confidence 99999999997556999998888899999999999986532211111111224588899999999999668999999999
Q ss_pred cc-HHHHHHHHHHHHc
Q psy10443 166 RG-LRQVFDEAVRAVL 180 (195)
Q Consensus 166 ~~-v~~~~~~l~~~~~ 180 (195)
+| ++++|..+++...
T Consensus 161 ~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 161 EKSVRDIFHVATMACL 176 (178)
T ss_pred CcCHHHHHHHHHHHHh
Confidence 95 9999999998654
No 7
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=3.1e-39 Score=221.69 Aligned_cols=173 Identities=67% Similarity=1.198 Sum_probs=152.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|||||||+++|..+.|..++.||.+..+...+.+++..+.+.+||++|+++|..++..+++++|++|+|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 79999999999999999999999998899999988777667788999999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR 166 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (195)
++++++++.+...|+..+....+++|+++|+||+|+...............+.+..++++.+++..+.+.++++||++|.
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~ 161 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQK 161 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCC
Confidence 99999999987669888877777899999999999976544444444444467888899999999887789999999999
Q ss_pred cHHHHHHHHHHHH
Q psy10443 167 GLRQVFDEAVRAV 179 (195)
Q Consensus 167 ~v~~~~~~l~~~~ 179 (195)
|++++|+.+++..
T Consensus 162 ~v~~~f~~~~~~~ 174 (175)
T cd01874 162 GLKNVFDEAILAA 174 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998854
No 8
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2.5e-39 Score=228.15 Aligned_cols=177 Identities=46% Similarity=0.853 Sum_probs=152.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
.+||+|+|++|||||||+++|..+.|+..|.||....+...+.+++..+.|.+||++|++.|..+++.+++++|++|+||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 37999999999999999999999999999999998887777888999999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
|++++++++.+...|...+....+++|+++|+||+|+.................++.+++..+++.+++++|++|||+++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~ 160 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS 160 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 99999999999767988887777899999999999996543222211122223477889999999999779999999998
Q ss_pred cc-HHHHHHHHHHHHcCC
Q psy10443 166 RG-LRQVFDEAVRAVLRP 182 (195)
Q Consensus 166 ~~-v~~~~~~l~~~~~~~ 182 (195)
.+ ++++|..+....+.+
T Consensus 161 ~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 161 ERSVRDVFHVATVASLGR 178 (222)
T ss_pred CcCHHHHHHHHHHHHHhc
Confidence 85 999999999976643
No 9
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2.9e-39 Score=221.18 Aligned_cols=173 Identities=57% Similarity=1.056 Sum_probs=150.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|+|||||+.++..+.|..++.||.+..+...+.+++..+.+++||++|+++|..++..++++++++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 69999999999999999999999999899999988777777889999999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR 166 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (195)
+++++|++.+...|+..+....+++|+++|+||+|+.+.... .......+.+..+++.++++..+..++++|||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQY--LADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhh--hhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 999999999854699988877778999999999999654211 111222345788899999999985579999999999
Q ss_pred cHHHHHHHHHHHHcC
Q psy10443 167 GLRQVFDEAVRAVLR 181 (195)
Q Consensus 167 ~v~~~~~~l~~~~~~ 181 (195)
|++++|..+++.+.+
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999997644
No 10
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.1e-39 Score=229.63 Aligned_cols=178 Identities=41% Similarity=0.733 Sum_probs=152.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
..+||+++|++|||||||+++|..+.|...+.||....+...+.+++..+.+.+|||+|++.|..++..+++++|++|+|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 56899999999999999999999999999999999877777788899999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
||++++++++.+...|+..+....++.|+++|+||+|+...............+.+..++++++++.++...|++|||++
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAkt 171 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFT 171 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 99999999998655699999887788999999999998643221111111122568888999999999955799999999
Q ss_pred cc-cHHHHHHHHHHHHcCC
Q psy10443 165 QR-GLRQVFDEAVRAVLRP 182 (195)
Q Consensus 165 ~~-~v~~~~~~l~~~~~~~ 182 (195)
|. |++++|..++..+.+.
T Consensus 172 g~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 172 SEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCcCHHHHHHHHHHHHHHh
Confidence 98 8999999999877643
No 11
>KOG0078|consensus
Probab=100.00 E-value=6.8e-40 Score=220.70 Aligned_cols=167 Identities=32% Similarity=0.602 Sum_probs=154.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
..-+||+++|++|||||+++.+|..+.|...+..|.+-.+ ..++..++..+.+++||++||++|+.+...|++.|++++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~ 89 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL 89 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence 3568999999999999999999999999999999987766 567888999999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCC-CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCP-DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|||+++..|++++.. |+..+.++.+ ++|.++|+||+|+... |.+..+..+.++.+++ +.|+++|
T Consensus 90 LvyDitne~Sfeni~~-W~~~I~e~a~~~v~~~LvGNK~D~~~~------------R~V~~e~ge~lA~e~G-~~F~EtS 155 (207)
T KOG0078|consen 90 LVYDITNEKSFENIRN-WIKNIDEHASDDVVKILVGNKCDLEEK------------RQVSKERGEALAREYG-IKFFETS 155 (207)
T ss_pred EEEEccchHHHHHHHH-HHHHHHhhCCCCCcEEEeecccccccc------------ccccHHHHHHHHHHhC-CeEEEcc
Confidence 9999999999999996 9999999865 8999999999999886 7799999999999998 8999999
Q ss_pred cCCcccHHHHHHHHHHHHcCCCc
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
|++|.|+++.|..|++.+..+.+
T Consensus 156 Ak~~~NI~eaF~~La~~i~~k~~ 178 (207)
T KOG0078|consen 156 AKTNFNIEEAFLSLARDILQKLE 178 (207)
T ss_pred ccCCCCHHHHHHHHHHHHHhhcc
Confidence 99999999999999998875443
No 12
>KOG0098|consensus
Probab=100.00 E-value=6.6e-40 Score=215.46 Aligned_cols=170 Identities=29% Similarity=0.533 Sum_probs=157.0
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCcc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTD 79 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d 79 (195)
|+-...+|++++|+.|||||+|+.+|+...|.+.++.|.+..+ ...+++++++++|++|||+||+.|++.+.+|++.+.
T Consensus 1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~ 80 (216)
T KOG0098|consen 1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA 80 (216)
T ss_pred CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence 6667889999999999999999999999999999998887776 457889999999999999999999999999999999
Q ss_pred EEEEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 80 VFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
++|+|||+++.++|.++.. |+..++.+ .+|..+++++||+|+... |.++.++.+.|+++++ +.++
T Consensus 81 GalLVydit~r~sF~hL~~-wL~D~rq~~~~NmvImLiGNKsDL~~r------------R~Vs~EEGeaFA~ehg-Lifm 146 (216)
T KOG0098|consen 81 GALLVYDITRRESFNHLTS-WLEDARQHSNENMVIMLIGNKSDLEAR------------REVSKEEGEAFAREHG-LIFM 146 (216)
T ss_pred ceEEEEEccchhhHHHHHH-HHHHHHHhcCCCcEEEEEcchhhhhcc------------ccccHHHHHHHHHHcC-ceee
Confidence 9999999999999999985 99999887 589999999999999887 5699999999999998 6788
Q ss_pred EeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
++||++++|++++|......+++..+
T Consensus 147 ETSakt~~~VEEaF~nta~~Iy~~~q 172 (216)
T KOG0098|consen 147 ETSAKTAENVEEAFINTAKEIYRKIQ 172 (216)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998886543
No 13
>KOG0094|consensus
Probab=100.00 E-value=1.3e-39 Score=215.69 Aligned_cols=166 Identities=31% Similarity=0.545 Sum_probs=152.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+.+|++++|+.+|||||||.||+.+.|...|.+|.+..+ +.++.+.++.++|++|||+|||+|+.+.+.|+++++++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 3569999999999999999999999999999999997776 678888999999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-C-CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-P-DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
+|||++|..|+++.. +|+..++... + ++-+++|+||.||.+. +.+..++....+++++ ..|+++
T Consensus 100 iVyDit~~~Sfe~t~-kWi~dv~~e~gs~~viI~LVGnKtDL~dk------------rqvs~eEg~~kAkel~-a~f~et 165 (221)
T KOG0094|consen 100 IVYDITDRNSFENTS-KWIEDVRRERGSDDVIIFLVGNKTDLSDK------------RQVSIEEGERKAKELN-AEFIET 165 (221)
T ss_pred EEEeccccchHHHHH-HHHHHHHhccCCCceEEEEEcccccccch------------hhhhHHHHHHHHHHhC-cEEEEe
Confidence 999999999999998 5999888764 3 5889999999999988 5588899999999999 489999
Q ss_pred ccCCcccHHHHHHHHHHHHcCCC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
||+.|.|+.++|..|...+....
T Consensus 166 sak~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 166 SAKAGENVKQLFRRIAAALPGME 188 (221)
T ss_pred cccCCCCHHHHHHHHHHhccCcc
Confidence 99999999999999998887664
No 14
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.1e-38 Score=220.60 Aligned_cols=167 Identities=29% Similarity=0.467 Sum_probs=147.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
...+||+++|+.|||||||+.+|..+.+..++.++.+..+ ...+.+++..+.+++||++|+++|..++..+++++|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4568999999999999999999999888877777765544 345677899999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|||++++.+++.+. .|+..+....+++|++||+||+|+.+. +.+..++++.+++..+ ++++++||
T Consensus 84 lVfD~t~~~Sf~~~~-~w~~~i~~~~~~~piilVGNK~DL~~~------------~~v~~~~~~~~a~~~~-~~~~e~SA 149 (189)
T cd04121 84 LVYDITNRWSFDGID-RWIKEIDEHAPGVPKILVGNRLHLAFK------------RQVATEQAQAYAERNG-MTFFEVSP 149 (189)
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccchhc------------cCCCHHHHHHHHHHcC-CEEEEecC
Confidence 999999999999997 599999887789999999999999764 4477888999999988 79999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCc
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
++|.|++++|+++++.+.....
T Consensus 150 k~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 150 LCNFNITESFTELARIVLMRHG 171 (189)
T ss_pred CCCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999998775443
No 15
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=2.8e-38 Score=216.77 Aligned_cols=173 Identities=73% Similarity=1.306 Sum_probs=150.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
.+||+++|++|||||||+.++..+.+..++.||....+...+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 37999999999999999999999999899999987776667778899999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
|++++++++.+...|+..+....+++|+++|+||+|+...............+.+..+++..++++++.++++++||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 99999999998766888887777789999999999996543333333333345688899999999998779999999999
Q ss_pred ccHHHHHHHHHHH
Q psy10443 166 RGLRQVFDEAVRA 178 (195)
Q Consensus 166 ~~v~~~~~~l~~~ 178 (195)
.|++++|+.+++.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998864
No 16
>KOG0394|consensus
Probab=100.00 E-value=3.9e-39 Score=211.42 Aligned_cols=169 Identities=29% Similarity=0.554 Sum_probs=152.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
...+||+++|++|+|||||+++|....|..++..|.+..+ ++.+.++++.+.+++|||+||++|.++...+++++|.++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 3469999999999999999999999999999999996665 688999999999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-----CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCcee
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-----PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKY 157 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
+|||+++++|++.+.. |...+..+. ...|+||+|||+|+....+ +.++.+.++.||...+.+||
T Consensus 87 lvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~----------r~VS~~~Aq~WC~s~gnipy 155 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKS----------RQVSEKKAQTWCKSKGNIPY 155 (210)
T ss_pred EEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCcc----------ceeeHHHHHHHHHhcCCcee
Confidence 9999999999999986 887776542 2489999999999976433 77999999999999999999
Q ss_pred EEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
|++|||...|++.+|+.+.+......
T Consensus 156 fEtSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 156 FETSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred EEecccccccHHHHHHHHHHHHHhcc
Confidence 99999999999999999999776554
No 17
>KOG0080|consensus
Probab=100.00 E-value=1.2e-38 Score=204.66 Aligned_cols=163 Identities=33% Similarity=0.596 Sum_probs=148.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
.+||+++|++|||||||+.+|....|....+.|.+..+ .....+++..+++.+|||+||++|+.++++|++++.++|+|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlV 90 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILV 90 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEE
Confidence 48999999999999999999999999877777776666 56788999999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
||++.++++..+. .|+..+.-+. +++..++|+||+|.... |.++.++...|+++++ +-|+++||
T Consensus 91 YDVT~Rdtf~kLd-~W~~Eld~Ystn~diikmlVgNKiDkes~------------R~V~reEG~kfAr~h~-~LFiE~SA 156 (209)
T KOG0080|consen 91 YDVTSRDTFVKLD-IWLKELDLYSTNPDIIKMLVGNKIDKESE------------RVVDREEGLKFARKHR-CLFIECSA 156 (209)
T ss_pred EEccchhhHHhHH-HHHHHHHhhcCCccHhHhhhcccccchhc------------ccccHHHHHHHHHhhC-cEEEEcch
Confidence 9999999999995 6999999874 56777999999997654 7799999999999999 56999999
Q ss_pred CCcccHHHHHHHHHHHHcCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~ 182 (195)
++.+|++..|+.+++.+++-
T Consensus 157 kt~~~V~~~FeelveKIi~t 176 (209)
T KOG0080|consen 157 KTRENVQCCFEELVEKIIET 176 (209)
T ss_pred hhhccHHHHHHHHHHHHhcC
Confidence 99999999999999998743
No 18
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2.8e-38 Score=219.91 Aligned_cols=174 Identities=36% Similarity=0.612 Sum_probs=146.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
||+++|.+|||||||+++|..+.+...+.+|.+..+.....+++..+.+++||+||+++|..++..+++.+|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999998888888888776666677888889999999999999999999999999999999999
Q ss_pred CChhcHHHHHHhhHHHHhhh----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 88 VSPSSFDNVTSKWYPELKHH----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
++++++..+.. |+..+... .++.|+++|+||+|+... +.+..++...+++.++ ++++++||+
T Consensus 81 ~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~SAk 146 (190)
T cd04144 81 TSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYE------------REVSTEEGAALARRLG-CEFIEASAK 146 (190)
T ss_pred CCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhcccc------------CccCHHHHHHHHHHhC-CEEEEecCC
Confidence 99999998875 77666543 257899999999999754 3356667788888888 689999999
Q ss_pred CcccHHHHHHHHHHHHcCCCc------------cccCCCceeeC
Q psy10443 164 TQRGLRQVFDEAVRAVLRPEP------------VKRRQRKCVII 195 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~~~------------~~~~~~~c~~~ 195 (195)
+|.|++++|+++.+.+.+.+. +++++++|++|
T Consensus 147 ~~~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (190)
T cd04144 147 TNVNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM 190 (190)
T ss_pred CCCCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence 999999999999998763332 33555678875
No 19
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=6.2e-38 Score=218.70 Aligned_cols=163 Identities=26% Similarity=0.556 Sum_probs=143.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+.|+++|++|||||||+++|..+.|...+.+|.+..+ ...+.+++..+.+++||++|+++|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4699999999999999999999999888888886554 456788899999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|++++++++.+.. |+..+.... +++|+++|+||+|+... +.+..+++.++++.+..+.++++||++
T Consensus 81 Dvtd~~Sf~~l~~-w~~~i~~~~~~~~piilVgNK~DL~~~------------~~v~~~~~~~~a~~~~~~~~~etSAkt 147 (202)
T cd04120 81 DITKKETFDDLPK-WMKMIDKYASEDAELLLVGNKLDCETD------------REISRQQGEKFAQQITGMRFCEASAKD 147 (202)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccccc------------cccCHHHHHHHHHhcCCCEEEEecCCC
Confidence 9999999999974 888887653 57999999999999654 447778888899887447899999999
Q ss_pred cccHHHHHHHHHHHHcCC
Q psy10443 165 QRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~~~ 182 (195)
|.|++++|.++++.+.+.
T Consensus 148 g~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 148 NFNVDEIFLKLVDDILKK 165 (202)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999987643
No 20
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.1e-37 Score=216.60 Aligned_cols=181 Identities=53% Similarity=0.968 Sum_probs=152.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeC-CEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVD-GIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|||||||+++|.++.+...+.+|....+...+... +..+.+.+||+||++++..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999998888888877765555554 77889999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
|++++++++.+...|+..+....+++|+++|+||+|+..... ..+.+..++..+++..++..+++++||++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 152 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN--------LDRKVTPAQAESVAKKQGAFAYLECSAKTM 152 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc--------ccCCcCHHHHHHHHHHcCCcEEEEccCCCC
Confidence 999999999987668887776667899999999999865321 013466778889999988558999999999
Q ss_pred ccHHHHHHHHHHHHcCCCc-----cccCCCceeeC
Q psy10443 166 RGLRQVFDEAVRAVLRPEP-----VKRRQRKCVII 195 (195)
Q Consensus 166 ~~v~~~~~~l~~~~~~~~~-----~~~~~~~c~~~ 195 (195)
.|++++|..+.+.+..... +++++++|++|
T Consensus 153 ~~v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~ 187 (187)
T cd04132 153 ENVEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL 187 (187)
T ss_pred CCHHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence 9999999999998876542 44555779876
No 21
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=6.1e-37 Score=210.54 Aligned_cols=173 Identities=72% Similarity=1.232 Sum_probs=152.0
Q ss_pred EEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVV 88 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 88 (195)
|+|+|++|||||||+++|.++.+...+.++....+.....+++..+.+.+||+||++.+..++..+++++|++|+|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 68999999999999999999999888888887777777788899999999999999999999999999999999999999
Q ss_pred ChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccH
Q psy10443 89 SPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGL 168 (195)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 168 (195)
++++++.+...|+..+....+++|+++|+||+|+...............+.+..+++..+++.++..+++++||++|.|+
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 160 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV 160 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence 99999998767999988877899999999999997654433333344445678888999999998668999999999999
Q ss_pred HHHHHHHHHHHcC
Q psy10443 169 RQVFDEAVRAVLR 181 (195)
Q Consensus 169 ~~~~~~l~~~~~~ 181 (195)
+++|..+++.+.+
T Consensus 161 ~~lf~~l~~~~~~ 173 (174)
T smart00174 161 REVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988754
No 22
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.2e-37 Score=212.00 Aligned_cols=164 Identities=32% Similarity=0.557 Sum_probs=145.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+.+||+++|++|||||||++++..+.+...+.+|.+..+...+.+++..+.+++||+||++.+..++..+++.+|++|+|
T Consensus 1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 45899999999999999999999999988888998877776778899999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
||++++.++..+.. |...+... .+++|+++|+||+|+... +.++.++...+++..+ ++++++||
T Consensus 81 ~d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~e~Sa 146 (172)
T cd04141 81 YSVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQ------------RQVTTEEGRNLAREFN-CPFFETSA 146 (172)
T ss_pred EECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhc------------CccCHHHHHHHHHHhC-CEEEEEec
Confidence 99999999999985 77776653 357999999999998654 4477778889998887 79999999
Q ss_pred CCcccHHHHHHHHHHHHcCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~ 182 (195)
++|.|++++|+++++.+.+.
T Consensus 147 ~~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 147 ALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999887753
No 23
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=5.1e-37 Score=213.40 Aligned_cols=165 Identities=34% Similarity=0.539 Sum_probs=144.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
+..+||+++|++|+|||||++++..+.+...+.+|.+..+...+.+++..+.+++||+||++++..++..+++++|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 67899999999999999999999999888888888877777777888999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||++++++++.+.. |...+... .+++|+++++||+|+... +.+..++...+++.++ ++++++|
T Consensus 83 v~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~------------~~i~~~~~~~~~~~~~-~~~~e~S 148 (189)
T PTZ00369 83 VYSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSE------------RQVSTGEGQELAKSFG-IPFLETS 148 (189)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc------------cccCHHHHHHHHHHhC-CEEEEee
Confidence 999999999999875 77766554 357999999999998654 3356667778888877 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|++++|.+|++.+.+.
T Consensus 149 ak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 149 AKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999877654
No 24
>KOG0079|consensus
Probab=100.00 E-value=1.6e-38 Score=201.35 Aligned_cols=162 Identities=30% Similarity=0.604 Sum_probs=150.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
-++.+++|++|+|||+|+.+|....|.+.|.-|++..+. .++.++|..+++++||++|+++|+.+...|+++.+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 368899999999999999999999999999999877764 5778899999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
||+++.+||.... +|++.++.+.+.+|-++|+||+|..+. +.+..++++.|+...+ +.+|++|+++
T Consensus 88 YDVTn~ESF~Nv~-rWLeei~~ncdsv~~vLVGNK~d~~~R------------rvV~t~dAr~~A~~mg-ie~FETSaKe 153 (198)
T KOG0079|consen 88 YDVTNGESFNNVK-RWLEEIRNNCDSVPKVLVGNKNDDPER------------RVVDTEDARAFALQMG-IELFETSAKE 153 (198)
T ss_pred EECcchhhhHhHH-HHHHHHHhcCccccceecccCCCCccc------------eeeehHHHHHHHHhcC-chheehhhhh
Confidence 9999999999998 599999999999999999999999876 6688899999999999 8999999999
Q ss_pred cccHHHHHHHHHHHHcC
Q psy10443 165 QRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~~ 181 (195)
+.|++..|.-|.+.+..
T Consensus 154 ~~NvE~mF~cit~qvl~ 170 (198)
T KOG0079|consen 154 NENVEAMFHCITKQVLQ 170 (198)
T ss_pred cccchHHHHHHHHHHHH
Confidence 99999999988876543
No 25
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=5.2e-36 Score=205.89 Aligned_cols=174 Identities=65% Similarity=1.100 Sum_probs=152.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|+|||||+++|..+.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++++|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999988888888877766677888889999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR 166 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (195)
++++++++.+...|...+....++.|+++++||+|+...............+.+..+++..+++.++..+++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 160 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK 160 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence 99999999887668888877678899999999999976554444444555567788889999999987789999999999
Q ss_pred cHHHHHHHHHHHHc
Q psy10443 167 GLRQVFDEAVRAVL 180 (195)
Q Consensus 167 ~v~~~~~~l~~~~~ 180 (195)
|++++|+.+++.++
T Consensus 161 gi~~~f~~~~~~~~ 174 (174)
T cd04135 161 GLKTVFDEAILAIL 174 (174)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999998763
No 26
>KOG0393|consensus
Probab=100.00 E-value=4.1e-37 Score=208.16 Aligned_cols=181 Identities=75% Similarity=1.254 Sum_probs=165.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeC-CEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVD-GIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+..+|++++|+.++|||+|+-.+..+.|++.|.||.-+++...+.++ ++.+.+.+|||+||++|..+++..+.++|.++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 46789999999999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
++|++.+++|+.++..+|+..++++.+++|+++||+|.|+..+..............+..+++..+++++++..++++||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 99999999999999999999999999999999999999998554444444444566789999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCc
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
++..|++++|+..++....+.+
T Consensus 162 ~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999998877654
No 27
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=9e-36 Score=204.50 Aligned_cols=171 Identities=57% Similarity=1.026 Sum_probs=147.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+|++++|++|+|||||++++..+.+..++.+|..+.+.....+++..+.+.+||+||++++..++..+++++|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 58999999999999999999999998889999877777777888888999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR 166 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (195)
++++++++.+...|+..+....+++|+++++||+|+...............+.+..+++..+++..+..+++++||++|.
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~ 160 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK 160 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 99999999886568888877667899999999999975433222222233356778889999999986689999999999
Q ss_pred cHHHHHHHHHH
Q psy10443 167 GLRQVFDEAVR 177 (195)
Q Consensus 167 ~v~~~~~~l~~ 177 (195)
|++++|+.++-
T Consensus 161 ~v~~lf~~~~~ 171 (173)
T cd04130 161 NLKEVFDTAIL 171 (173)
T ss_pred CHHHHHHHHHh
Confidence 99999998764
No 28
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.1e-36 Score=210.77 Aligned_cols=163 Identities=27% Similarity=0.445 Sum_probs=141.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeC-CEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVD-GIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.++ +..+.+.+||+||++.+..++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999988888888887554 3456666 7889999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh-----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH-----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (195)
||++++++++.+. .|+..+... ..++|+++|+||+|+... +.+..+++.++++..+..++++
T Consensus 81 ~D~t~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~e 147 (201)
T cd04107 81 FDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPCLLLANKCDLKKR------------LAKDGEQMDQFCKENGFIGWFE 147 (201)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhhcccCCCCCcEEEEEECCCcccc------------cccCHHHHHHHHHHcCCceEEE
Confidence 9999999999997 487776543 257899999999999753 3367788999999988678999
Q ss_pred eccCCcccHHHHHHHHHHHHcCC
Q psy10443 160 CSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+||++|.|++++|++|.+.+.+.
T Consensus 148 ~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 148 TSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999988654
No 29
>KOG0087|consensus
Probab=100.00 E-value=1.1e-36 Score=204.46 Aligned_cols=166 Identities=31% Similarity=0.534 Sum_probs=153.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.-|||+++|+++||||-|+.||..+.|..+..+|.+..+ +....++++.++.++|||+||++|+..+..|++++.++++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll 92 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 92 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence 458999999999999999999999999988899987766 5678899999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|||++...+++.+. +|+..++.+. +++++++|+||+||.+- |.+..++++.++...+ ..++++||
T Consensus 93 VYDITr~~Tfenv~-rWL~ELRdhad~nivimLvGNK~DL~~l------------raV~te~~k~~Ae~~~-l~f~EtSA 158 (222)
T KOG0087|consen 93 VYDITRRQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLNHL------------RAVPTEDGKAFAEKEG-LFFLETSA 158 (222)
T ss_pred EEechhHHHHHHHH-HHHHHHHhcCCCCeEEEEeecchhhhhc------------cccchhhhHhHHHhcC-ceEEEecc
Confidence 99999999999887 5999999986 78999999999999885 6688999999999998 78999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCc
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
.++.|++++|+.++..+++.-.
T Consensus 159 l~~tNVe~aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 159 LDATNVEKAFERVLTEIYKIVS 180 (222)
T ss_pred cccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999988875433
No 30
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=6.3e-36 Score=203.63 Aligned_cols=161 Identities=32% Similarity=0.566 Sum_probs=140.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
++||+++|.+|||||||++++..+.+...+.+|....+...+.+++..+.+.+||+||++.+..++..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 47999999999999999999999888888888887777677788898999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|++++.+++.+.. |...+... .++.|+++++||+|+... +.+..++...+++.++ ++++++||+
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 146 (164)
T cd04175 81 SITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDE------------RVVGKEQGQNLARQWG-CAFLETSAK 146 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhc------------cEEcHHHHHHHHHHhC-CEEEEeeCC
Confidence 9999999998875 66666542 468999999999999764 2355566777888877 789999999
Q ss_pred CcccHHHHHHHHHHHHc
Q psy10443 164 TQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~ 180 (195)
+|.|++++|.++.+.+.
T Consensus 147 ~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 147 AKINVNEIFYDLVRQIN 163 (164)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999988664
No 31
>KOG0093|consensus
Probab=100.00 E-value=1.4e-36 Score=192.34 Aligned_cols=166 Identities=30% Similarity=0.561 Sum_probs=148.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecccee-EEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP-FTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
-+|++++|++.+|||||+.++.+..|...+..|.+..+... +--..+.+.+++|||+|+++|+.++..++++++++|++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 36999999999999999999999999888888887776543 33356779999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
||++|.+|+..+.. |...++.+. .+.|+++++||||+..+ |.++.+..+.++..+| ..+|++||+
T Consensus 101 yDitNeeSf~svqd-w~tqIktysw~naqvilvgnKCDmd~e------------Rvis~e~g~~l~~~LG-fefFEtSaK 166 (193)
T KOG0093|consen 101 YDITNEESFNSVQD-WITQIKTYSWDNAQVILVGNKCDMDSE------------RVISHERGRQLADQLG-FEFFETSAK 166 (193)
T ss_pred EecCCHHHHHHHHH-HHHHheeeeccCceEEEEecccCCccc------------eeeeHHHHHHHHHHhC-hHHhhhccc
Confidence 99999999999986 999998875 68999999999999887 7799999999999999 699999999
Q ss_pred CcccHHHHHHHHHHHHcCCCcc
Q psy10443 164 TQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
.+.|++++|+.++..+-.....
T Consensus 167 ~NinVk~~Fe~lv~~Ic~kmse 188 (193)
T KOG0093|consen 167 ENINVKQVFERLVDIICDKMSE 188 (193)
T ss_pred ccccHHHHHHHHHHHHHHHhhh
Confidence 9999999999999987665443
No 32
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.3e-35 Score=201.80 Aligned_cols=160 Identities=33% Similarity=0.578 Sum_probs=139.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
.+||+++|++|||||||++++..+.+...+.+|....+...+.+++..+.+.+||+||++++..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 47999999999999999999999988888888887666667788898999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|++++++++.+.. |...+... .++.|+++++||+|+... +.+..++...+++.++ .+++++||+
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 146 (163)
T cd04136 81 SITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDE------------RVVSREEGQALARQWG-CPFYETSAK 146 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc------------ceecHHHHHHHHHHcC-CeEEEecCC
Confidence 9999999988875 77766653 357999999999998654 2355566777888877 799999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRAV 179 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~ 179 (195)
+|.|++++|.++.+.+
T Consensus 147 ~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 147 SKINVDEVFADLVRQI 162 (163)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998764
No 33
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.8e-35 Score=207.10 Aligned_cols=164 Identities=30% Similarity=0.568 Sum_probs=143.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
..+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+..++..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 468999999999999999999999988877888876443 3456667888899999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||++++++++.+.. |+..+....+..|+++|+||+|+... +.+..++...+++..+ ++++++||+
T Consensus 85 v~D~~~~~s~~~~~~-~~~~i~~~~~~~piivVgNK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~ 150 (199)
T cd04110 85 VYDVTNGESFVNVKR-WLQEIEQNCDDVCKVLVGNKNDDPER------------KVVETEDAYKFAGQMG-ISLFETSAK 150 (199)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEECC
Confidence 999999999999874 88888877788999999999998764 3355677888888887 789999999
Q ss_pred CcccHHHHHHHHHHHHcCC
Q psy10443 164 TQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~ 182 (195)
+|.|++++|++|.+.+.+.
T Consensus 151 ~~~gi~~lf~~l~~~~~~~ 169 (199)
T cd04110 151 ENINVEEMFNCITELVLRA 169 (199)
T ss_pred CCcCHHHHHHHHHHHHHHh
Confidence 9999999999999988654
No 34
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.6e-35 Score=202.05 Aligned_cols=162 Identities=27% Similarity=0.552 Sum_probs=141.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
.+||+++|++|||||||+++|..+.+...+.+|.+..+. ..+.+++..+.+.+||+||++++...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 379999999999999999999999988888888766553 4567788889999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
||++++++++.+.. |+..+... .++.|+++|+||+|+... +.+..+++..+++..+ ++++++||+
T Consensus 82 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iiiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~ 147 (166)
T cd04122 82 YDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLEAQ------------RDVTYEEAKQFADENG-LLFLECSAK 147 (166)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc------------cCcCHHHHHHHHHHcC-CEEEEEECC
Confidence 99999999999875 87776554 467999999999999765 3366778888888887 789999999
Q ss_pred CcccHHHHHHHHHHHHcC
Q psy10443 164 TQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~ 181 (195)
+|.|++++|.++++.+.+
T Consensus 148 ~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 148 TGENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999987754
No 35
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=100.00 E-value=8.8e-35 Score=199.97 Aligned_cols=173 Identities=60% Similarity=1.043 Sum_probs=147.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
.||+++|++|||||||+++|..+.+...+.+|....+...+.+++..+.+.+||++|++.+...+..++.++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999999998888888877766677788888999999999999999988889999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR 166 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (195)
++++++++.+...|...+....++.|+++++||+|+.................+...+.+.++...+..+++++||++|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE 161 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence 99999999887678888887777899999999999876544333333333345666788888888886789999999999
Q ss_pred cHHHHHHHHHHHH
Q psy10443 167 GLRQVFDEAVRAV 179 (195)
Q Consensus 167 ~v~~~~~~l~~~~ 179 (195)
|++++|.++.+.+
T Consensus 162 ~v~~lf~~l~~~~ 174 (175)
T cd01870 162 GVREVFEMATRAA 174 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 36
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2.9e-35 Score=208.31 Aligned_cols=161 Identities=27% Similarity=0.467 Sum_probs=139.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCC-EEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDG-IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.+++ ..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888889986443 44555643 578999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhC----CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHC----PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
||++++++++.+.. |+..+.... .++|+++|+||+|+.+. +.+..++...+++.++ ++++++
T Consensus 81 ~D~t~~~s~~~~~~-w~~~l~~~~~~~~~~~piilVgNK~DL~~~------------~~v~~~~~~~~~~~~~-~~~~~i 146 (215)
T cd04109 81 YDVTNSQSFENLED-WYSMVRKVLKSSETQPLVVLVGNKTDLEHN------------RTVKDDKHARFAQANG-MESCLV 146 (215)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhccccCCCceEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEE
Confidence 99999999999874 888887653 35789999999999754 4467778888999888 689999
Q ss_pred ccCCcccHHHHHHHHHHHHcC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
||++|+|++++|++|.+.+..
T Consensus 147 SAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 147 SAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998753
No 37
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=3.4e-35 Score=207.09 Aligned_cols=170 Identities=25% Similarity=0.393 Sum_probs=133.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|.+|||||||+++|..+.+.. +.+|.+..+.. .....+.+.+||++|++.|..++..+++++|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~---~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYL---KQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEE---EEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999998864 56666544321 11245778899999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHh-------hhhhhhcCCCCccHHHHHHHHHHcCC-----
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRET-------LNLLSEQNLSPVKREQGQKLANKIRA----- 154 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~----- 154 (195)
+++++++..+...|........+++|+++|+||+|+...... .........+.+..+++..+++..+.
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence 999999999986555554444567999999999999752110 00011111256888899999998763
Q ss_pred --------ceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 155 --------VKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 155 --------~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
++|+++||++|.|++++|..+++.+.
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999998765
No 38
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=1.2e-34 Score=201.24 Aligned_cols=187 Identities=48% Similarity=0.818 Sum_probs=155.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+.||+|+|++|+|||||++++..+.+...+.++....+.....+++..+.+.+||++|++.+......+++.+++++++|
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 35899999999999999999998888777777776666666777888889999999999998887777889999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
|+++++++..+...|+..+....+++|+++|+||+|+.+....... ....+.+..++...+++.++..+++++||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEE--YRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccc--cccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999876799999877788999999999998543211100 11124466677888999998778999999999
Q ss_pred ccHHHHHHHHHHHHcCCCccccCCCceee
Q psy10443 166 RGLRQVFDEAVRAVLRPEPVKRRQRKCVI 194 (195)
Q Consensus 166 ~~v~~~~~~l~~~~~~~~~~~~~~~~c~~ 194 (195)
.|++++|+++.+.+...+++.+-.++|.|
T Consensus 159 ~~v~~~f~~l~~~~~~~~~~~~~~~~~~~ 187 (187)
T cd04129 159 EGVDDVFEAATRAALLVRKSEPGAGCCII 187 (187)
T ss_pred CCHHHHHHHHHHHHhcccCcccccCcccC
Confidence 99999999999999888887776666653
No 39
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=5e-35 Score=198.49 Aligned_cols=158 Identities=29% Similarity=0.579 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+++||++|++++..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999999888888876554 456778888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|++++++++.+.. |+..+.... .++|+++|+||+|+... +.+..++...+++.++ ++++++||++
T Consensus 81 d~~~~~sf~~~~~-~~~~~~~~~~~~~~iilvgnK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sa~~ 146 (161)
T cd04117 81 DISSERSYQHIMK-WVSDVDEYAPEGVQKILIGNKADEEQK------------RQVGDEQGNKLAKEYG-MDFFETSACT 146 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 9999999999974 888777654 47999999999999765 4466788888988887 7899999999
Q ss_pred cccHHHHHHHHHHH
Q psy10443 165 QRGLRQVFDEAVRA 178 (195)
Q Consensus 165 ~~~v~~~~~~l~~~ 178 (195)
|.|++++|.+|.++
T Consensus 147 ~~~v~~~f~~l~~~ 160 (161)
T cd04117 147 NSNIKESFTRLTEL 160 (161)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999875
No 40
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=5.2e-35 Score=201.74 Aligned_cols=167 Identities=23% Similarity=0.494 Sum_probs=138.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|||||||+++|..+.+..++.||.+..+ ...+.+++..+.+.+||++|++.|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999888999987654 456778899999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCC-CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCP-DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|+++++++.++.. |+..+....+ ..| ++|+||+|+........ +....++.+++++..+ .+++++||++
T Consensus 81 D~t~~~s~~~i~~-~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~-------~~~~~~~~~~~a~~~~-~~~~e~SAk~ 150 (182)
T cd04128 81 DLTRKSTLNSIKE-WYRQARGFNKTAIP-ILVGTKYDLFADLPPEE-------QEEITKQARKYAKAMK-APLIFCSTSH 150 (182)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCE-EEEEEchhccccccchh-------hhhhHHHHHHHHHHcC-CEEEEEeCCC
Confidence 9999999999974 8888776543 456 67899999964211000 1122356778888888 7899999999
Q ss_pred cccHHHHHHHHHHHHcCCC
Q psy10443 165 QRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~~~~ 183 (195)
|.|++++|.++.+.+.+..
T Consensus 151 g~~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 151 SINVQKIFKIVLAKAFDLP 169 (182)
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 9999999999999887543
No 41
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=5.5e-35 Score=198.77 Aligned_cols=160 Identities=32% Similarity=0.570 Sum_probs=137.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
++||+++|.+|+|||||++++..+.+...+.+|....+.....+++..+.+++||+||+++|..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999999998888888876555667778888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|+++++++.++.. |...+... ..++|+++|+||+|+... +.+...+...++..++ ++++++||+
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 146 (163)
T cd04176 81 SLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESE------------REVSSAEGRALAEEWG-CPFMETSAK 146 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhc------------CccCHHHHHHHHHHhC-CEEEEecCC
Confidence 9999999999875 77666654 358999999999998653 2355566777777777 689999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRAV 179 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~ 179 (195)
+|.|++++|.++++.+
T Consensus 147 ~~~~v~~l~~~l~~~l 162 (163)
T cd04176 147 SKTMVNELFAEIVRQM 162 (163)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998754
No 42
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=3.6e-35 Score=199.46 Aligned_cols=159 Identities=41% Similarity=0.787 Sum_probs=146.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccce-eeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
||+++|++|||||||+++|.++.+...+.+|. .+.....+.+++..+.+.+||++|++.+..++..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998 55557788889999999999999999999888899999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCC-CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCP-DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~-~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
+++++|+..+. .|+..+....+ +.|+++++||+|+.+. +.+..++++++++.++ .+++++||+++
T Consensus 81 ~~~~~S~~~~~-~~~~~i~~~~~~~~~iivvg~K~D~~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sa~~~ 146 (162)
T PF00071_consen 81 VTDEESFENLK-KWLEEIQKYKPEDIPIIVVGNKSDLSDE------------REVSVEEAQEFAKELG-VPYFEVSAKNG 146 (162)
T ss_dssp TTBHHHHHTHH-HHHHHHHHHSTTTSEEEEEEETTTGGGG------------SSSCHHHHHHHHHHTT-SEEEEEBTTTT
T ss_pred ccccccccccc-cccccccccccccccceeeecccccccc------------ccchhhHHHHHHHHhC-CEEEEEECCCC
Confidence 99999999998 59999998877 7999999999999874 5588889999999999 89999999999
Q ss_pred ccHHHHHHHHHHHHc
Q psy10443 166 RGLRQVFDEAVRAVL 180 (195)
Q Consensus 166 ~~v~~~~~~l~~~~~ 180 (195)
.|+.++|..+++.+.
T Consensus 147 ~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 147 ENVKEIFQELIRKIL 161 (162)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998764
No 43
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=7e-35 Score=206.50 Aligned_cols=163 Identities=29% Similarity=0.465 Sum_probs=139.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+..+||+++|.+|||||||+++++.+.+...+.+|.+..+ ...+..++..+.+.+||++|++.|..++..++++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 5789999999999999999999999999888888886554 345566777899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|||++++++++.+.. |+..+....++.|+++|+||+|+... .+..++. .+++..+ ++++++||
T Consensus 91 lvfD~~~~~s~~~i~~-w~~~i~~~~~~~piilvgNK~Dl~~~-------------~v~~~~~-~~~~~~~-~~~~e~SA 154 (219)
T PLN03071 91 IMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAKQV-TFHRKKN-LQYYEISA 154 (219)
T ss_pred EEEeCCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEEchhhhhc-------------cCCHHHH-HHHHhcC-CEEEEcCC
Confidence 9999999999999874 99888877788999999999998542 1333344 6666665 78999999
Q ss_pred CCcccHHHHHHHHHHHHcCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~ 182 (195)
++|.|++++|.+|++.+.+.
T Consensus 155 k~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 155 KSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999988654
No 44
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=7.7e-35 Score=202.38 Aligned_cols=162 Identities=24% Similarity=0.462 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999998777778876544 355677888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|+++++++..+.. |+..+.... .+.|+++++||+|+.+. +.+..++...+++..+ ++++++||++
T Consensus 81 d~~~~~s~~~i~~-~~~~i~~~~~~~~~~ivv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~evSa~~ 146 (188)
T cd04125 81 DVTDQESFENLKF-WINEINRYARENVIKVIVANKSDLVNN------------KVVDSNIAKSFCDSLN-IPFFETSAKQ 146 (188)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECCCCccc------------ccCCHHHHHHHHHHcC-CeEEEEeCCC
Confidence 9999999999985 888877653 46899999999998754 3356677778888877 5899999999
Q ss_pred cccHHHHHHHHHHHHcCC
Q psy10443 165 QRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~~~ 182 (195)
|.|++++|.+|.+.+.+.
T Consensus 147 ~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 147 SINVEEAFILLVKLIIKR 164 (188)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988643
No 45
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.4e-34 Score=201.24 Aligned_cols=170 Identities=44% Similarity=0.770 Sum_probs=133.2
Q ss_pred ceEEEEEcCCCCchHHHHH-HhhcC-----CCCCCccccee--ecccee--------EEeCCEEEEEEEEeCCCCccccc
Q psy10443 6 PIKCVVVGDGTVGKTCMLI-SYTTD-----SFPGEYVPTVF--DNYSAP--------FTVDGIPVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~-~l~~~-----~~~~~~~~t~~--~~~~~~--------~~~~~~~~~l~~~D~~G~~~~~~ 69 (195)
.+||+++|++|||||||+. ++.++ .+...+.||.. +.+... ..+++..+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999995 66554 34566778874 223221 25688999999999999976 3
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhh------h-hhcCCCCccH
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNL------L-SEQNLSPVKR 142 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~------~-~~~~~~~~~~ 142 (195)
+...+++++|++++|||+++++|++.+...|+..+....++.|+++|+||+|+......... . .....+.+..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 45678999999999999999999999875698888877778999999999998642110000 0 0001256888
Q ss_pred HHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 143 EQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
++++.+++.++ ++|++|||++|.|++++|+.+++.
T Consensus 160 ~e~~~~a~~~~-~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELG-IPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHHh
Confidence 99999999999 599999999999999999998864
No 46
>KOG0086|consensus
Probab=100.00 E-value=7e-36 Score=190.56 Aligned_cols=163 Identities=28% Similarity=0.516 Sum_probs=148.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.-+|++++|+.|+|||+|+++|....|..+...|.+..+ +..+.+.++.+++++||++||++|++..+.|++++.+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 357999999999999999999999999888888887766 5678889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|||+++.+++..+.+ |+..++... +++-+++++||.|+... +.+...++.+|+.+.. +-++++||
T Consensus 88 VYD~TsrdsfnaLtn-WL~DaR~lAs~nIvviL~GnKkDL~~~------------R~VtflEAs~FaqEne-l~flETSa 153 (214)
T KOG0086|consen 88 VYDITSRDSFNALTN-WLTDARTLASPNIVVILCGNKKDLDPE------------REVTFLEASRFAQENE-LMFLETSA 153 (214)
T ss_pred EEeccchhhHHHHHH-HHHHHHhhCCCcEEEEEeCChhhcChh------------hhhhHHHHHhhhcccc-eeeeeecc
Confidence 999999999999986 999988864 67889999999999887 5588899999999998 68999999
Q ss_pred CCcccHHHHHHHHHHHHcC
Q psy10443 163 LTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~ 181 (195)
++|+|+++.|-...+.+..
T Consensus 154 ~TGeNVEEaFl~c~~tIl~ 172 (214)
T KOG0086|consen 154 LTGENVEEAFLKCARTILN 172 (214)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 9999999999999888764
No 47
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=6.2e-35 Score=201.59 Aligned_cols=163 Identities=33% Similarity=0.585 Sum_probs=139.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeC----------CEEEEEEEEeCCCCccccccCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVD----------GIPVSLGLWDTAGQEDYDRLRPL 73 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~----------~~~~~l~~~D~~G~~~~~~~~~~ 73 (195)
+.+||+++|++|||||||+++|..+.+...+.+|.+..+. ..+.+. +..+.+.+||+||++++..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 4689999999999999999999999988888888755443 233332 45688999999999999999999
Q ss_pred CCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 74 SYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
+++++|++++|||+++++++.++.. |+..+... .++.|+++|+||+|+.+. +.+..++...+++.
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~------------~~v~~~~~~~~~~~ 149 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRN-WMSQLQTHAYCENPDIVLCGNKADLEDQ------------RQVSEEQAKALADK 149 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEeCccchhc------------CccCHHHHHHHHHH
Confidence 9999999999999999999999985 88887664 357899999999999765 33666788899999
Q ss_pred cCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 152 IRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 152 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
++ ++++++||++|.|++++|++|.+.+.+
T Consensus 150 ~~-~~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 150 YG-IPYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred cC-CeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 88 689999999999999999999987754
No 48
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.9e-34 Score=196.49 Aligned_cols=160 Identities=32% Similarity=0.600 Sum_probs=137.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+..++..+.+.+||+||++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999998877888776444 234556778899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|++++++++.+.. |+..+.... ++.|+++++||+|+... +....++..+++..++ ++++++||++
T Consensus 82 d~~~~~s~~~~~~-~~~~i~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (165)
T cd01865 82 DITNEESFNAVQD-WSTQIKTYSWDNAQVILVGNKCDMEDE------------RVVSSERGRQLADQLG-FEFFEASAKE 147 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCCEEEEEECcccCcc------------cccCHHHHHHHHHHcC-CEEEEEECCC
Confidence 9999999998875 888887654 57899999999999765 3355667777888877 6899999999
Q ss_pred cccHHHHHHHHHHHHc
Q psy10443 165 QRGLRQVFDEAVRAVL 180 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~ 180 (195)
|.|++++|+++.+.+.
T Consensus 148 ~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 148 NINVKQVFERLVDIIC 163 (165)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 49
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.6e-34 Score=197.12 Aligned_cols=161 Identities=29% Similarity=0.587 Sum_probs=140.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
.+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+++||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999888777777765443 45567788889999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
+|+++++++..+.. |+..+.... ++.|+++++||+|+... +.+..+++..++...+ ++++++||+
T Consensus 82 ~d~~~~~s~~~l~~-~~~~~~~~~~~~~~~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 147 (166)
T cd01869 82 YDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTDK------------RVVDYSEAQEFADELG-IPFLETSAK 147 (166)
T ss_pred EECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEEChhcccc------------cCCCHHHHHHHHHHcC-CeEEEEECC
Confidence 99999999999985 888887654 67999999999998665 3366677888888887 699999999
Q ss_pred CcccHHHHHHHHHHHHc
Q psy10443 164 TQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~ 180 (195)
+|.|++++|.++.+.+.
T Consensus 148 ~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 148 NATNVEQAFMTMAREIK 164 (166)
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99999999999998775
No 50
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.7e-34 Score=197.11 Aligned_cols=163 Identities=28% Similarity=0.597 Sum_probs=141.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
..+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999999999888888876554 3456678888999999999999999988999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+|+++++++..+.. |+..+.... .++|+++++||+|+.+. +.+..+++..++..++ .+++++||
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 147 (167)
T cd01867 82 VYDITDEKSFENIRN-WMRNIEEHASEDVERMLVGNKCDMEEK------------RVVSKEEGEALADEYG-IKFLETSA 147 (167)
T ss_pred EEECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeC
Confidence 999999999999885 888877653 57999999999999764 3356677788888877 68999999
Q ss_pred CCcccHHHHHHHHHHHHcC
Q psy10443 163 LTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~ 181 (195)
++|.|++++|+++.+.+..
T Consensus 148 ~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 148 KANINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998753
No 51
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.3e-34 Score=196.53 Aligned_cols=159 Identities=36% Similarity=0.602 Sum_probs=137.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
.+||+++|++|||||||+++|.++.+...+.+|....+.....+++..+.+.+||+||++++..++..++++++++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 47999999999999999999999988888888887776667778888889999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|++++.+++.+.. |...+... ..+.|+++|+||+|+... .....+...++...+ ++++++||+
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~-------------~~~~~~~~~~~~~~~-~~~~~~Sa~ 145 (162)
T cd04138 81 AINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAAR-------------TVSSRQGQDLAKSYG-IPYIETSAK 145 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc-------------eecHHHHHHHHHHhC-CeEEEecCC
Confidence 9999999988874 66665543 357999999999998653 144566777777777 689999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRAV 179 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~ 179 (195)
+|.|++++|+++.+.+
T Consensus 146 ~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 146 TRQGVEEAFYTLVREI 161 (162)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998754
No 52
>KOG0095|consensus
Probab=100.00 E-value=1.5e-35 Score=188.40 Aligned_cols=162 Identities=28% Similarity=0.530 Sum_probs=143.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
--+||+++|+.|+|||+|+++|+++-|++....|.+..+ -+++.+++.++++++||++||++|++.+.+|++.++++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 358999999999999999999999999888888886655 5788999999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|||++...++.-+.+ |+..+..+. ..+--++|+||.|+.+..+ +..+..++|+.... ..++++||
T Consensus 86 vydiscqpsfdclpe-wlreie~yan~kvlkilvgnk~d~~drre------------vp~qigeefs~~qd-myfletsa 151 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPE-WLREIEQYANNKVLKILVGNKIDLADRRE------------VPQQIGEEFSEAQD-MYFLETSA 151 (213)
T ss_pred EEecccCcchhhhHH-HHHHHHHHhhcceEEEeeccccchhhhhh------------hhHHHHHHHHHhhh-hhhhhhcc
Confidence 999999999999985 999998875 4577799999999988743 66677788887755 56899999
Q ss_pred CCcccHHHHHHHHHHHHc
Q psy10443 163 LTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~ 180 (195)
++.+|++++|..+.-.+.
T Consensus 152 kea~nve~lf~~~a~rli 169 (213)
T KOG0095|consen 152 KEADNVEKLFLDLACRLI 169 (213)
T ss_pred cchhhHHHHHHHHHHHHH
Confidence 999999999999876654
No 53
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.5e-34 Score=200.17 Aligned_cols=162 Identities=35% Similarity=0.657 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+||+++|++|||||||+++|..+.+. ..+.+|.+..+. ..+.+++..+.+.+||+||++++...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998875 356677665543 3567788899999999999999998888999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
+|++++++++.+.. |+..+.... .++|+++++||+|+... +.+..++...++..++ .+++++||+
T Consensus 81 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~NK~Dl~~~------------~~~~~~~~~~l~~~~~-~~~~e~Sa~ 146 (191)
T cd04112 81 YDITNKASFDNIRA-WLTEIKEYAQEDVVIMLLGNKADMSGE------------RVVKREDGERLAKEYG-VPFMETSAK 146 (191)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEcccchhc------------cccCHHHHHHHHHHcC-CeEEEEeCC
Confidence 99999999998875 888887765 47899999999998754 3356677888888887 689999999
Q ss_pred CcccHHHHHHHHHHHHcCC
Q psy10443 164 TQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~ 182 (195)
+|.|++++|.+|.+.+...
T Consensus 147 ~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 147 TGLNVELAFTAVAKELKHR 165 (191)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999988655
No 54
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2.1e-34 Score=196.31 Aligned_cols=159 Identities=27% Similarity=0.493 Sum_probs=135.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
.+||+++|++|||||||+++++++.+...+.+|....+......++..+.+.+||+||++++..++..+++.++++++||
T Consensus 1 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 1 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 37999999999999999999999998888888877666656667778899999999999999988888999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhh----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHH----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+++++++..+.. |...+... .+++|+++|+||+|+... +.+..+++..++..++ ++++++|
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~S 146 (165)
T cd04140 81 SVTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHK------------REVSSNEGAACATEWN-CAFMETS 146 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECcccccc------------CeecHHHHHHHHHHhC-CcEEEee
Confidence 9999999998875 66666543 267999999999999653 3355667777887777 6899999
Q ss_pred cCCcccHHHHHHHHHHH
Q psy10443 162 ALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~ 178 (195)
|++|.|++++|++|++.
T Consensus 147 A~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 147 AKTNHNVQELFQELLNL 163 (165)
T ss_pred cCCCCCHHHHHHHHHhc
Confidence 99999999999998753
No 55
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=2e-34 Score=196.78 Aligned_cols=160 Identities=28% Similarity=0.554 Sum_probs=139.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+++||+||++.+..++..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998888888876654 446677888999999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC------CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC------PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~------~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (195)
|+++++++..+.. |+..+.... .+.|+++|+||+|+.+. +....++.+.++...+ +++++
T Consensus 81 D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~ 146 (168)
T cd04119 81 DVTDRQSFEALDS-WLKEMKQEGGPHGNMENIVVVVCANKIDLTKH------------RAVSEDEGRLWAESKG-FKYFE 146 (168)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhccccccCCCceEEEEEEchhcccc------------cccCHHHHHHHHHHcC-CeEEE
Confidence 9999999998874 888776653 46899999999999743 3356677778888887 78999
Q ss_pred eccCCcccHHHHHHHHHHHHc
Q psy10443 160 CSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
+||++|.|++++|++|.+.+.
T Consensus 147 ~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 147 TSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998875
No 56
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=2.1e-34 Score=194.50 Aligned_cols=155 Identities=25% Similarity=0.381 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|||||||+.++..+.+...+.|+. ..+...+.+++..+.+.+||++|++. ..+++.+|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 589999999999999999999988877666553 34456678899899999999999975 346688999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
++++++++.+.. |+..+.... +++|+++|+||+|+..... +.+..+++.++++..+.+++++|||++
T Consensus 75 ~~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~----------~~v~~~~~~~~~~~~~~~~~~e~SAk~ 143 (158)
T cd04103 75 LENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNP----------RVIDDARARQLCADMKRCSYYETCATY 143 (158)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCC----------cccCHHHHHHHHHHhCCCcEEEEecCC
Confidence 999999999975 877776653 6799999999999853211 447777888899887667999999999
Q ss_pred cccHHHHHHHHHHH
Q psy10443 165 QRGLRQVFDEAVRA 178 (195)
Q Consensus 165 ~~~v~~~~~~l~~~ 178 (195)
|.|++++|..+.+.
T Consensus 144 ~~~i~~~f~~~~~~ 157 (158)
T cd04103 144 GLNVERVFQEAAQK 157 (158)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998864
No 57
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=4.3e-34 Score=194.75 Aligned_cols=159 Identities=31% Similarity=0.508 Sum_probs=134.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|||||||+++++.+.+...+.+|.+..+ ...+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999998888777888876554 334556778899999999999999998899999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
|++++++++.+.. |+..+.....++|+++|+||+|+... ... .+..++++... ++++++||++|
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~piiiv~nK~Dl~~~-------------~~~-~~~~~~~~~~~-~~~~e~Sa~~~ 144 (166)
T cd00877 81 DVTSRVTYKNVPN-WHRDLVRVCGNIPIVLCGNKVDIKDR-------------KVK-AKQITFHRKKN-LQYYEISAKSN 144 (166)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEEchhcccc-------------cCC-HHHHHHHHHcC-CEEEEEeCCCC
Confidence 9999999999874 98888877678999999999999632 122 23345555544 78999999999
Q ss_pred ccHHHHHHHHHHHHcC
Q psy10443 166 RGLRQVFDEAVRAVLR 181 (195)
Q Consensus 166 ~~v~~~~~~l~~~~~~ 181 (195)
.|++++|++|.+.+.+
T Consensus 145 ~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 145 YNFEKPFLWLARKLLG 160 (166)
T ss_pred CChHHHHHHHHHHHHh
Confidence 9999999999988764
No 58
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=4.9e-34 Score=193.66 Aligned_cols=159 Identities=25% Similarity=0.494 Sum_probs=133.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|||||||++++..+.+...+.++..... .....+++..+.+++||++|++.+..++..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999888776666654433 345567888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
|++++.++.++. .|+..+....++.|+++++||+|+... . .++...++...+ ++++++||++|
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~p~ivv~nK~Dl~~~--------------~-~~~~~~~~~~~~-~~~~~~Sa~~~ 143 (161)
T cd04124 81 DVTRKITYKNLS-KWYEELREYRPEIPCIVVANKIDLDPS--------------V-TQKKFNFAEKHN-LPLYYVSAADG 143 (161)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEECccCchh--------------H-HHHHHHHHHHcC-CeEEEEeCCCC
Confidence 999999998887 488888877778999999999998432 1 133445666665 68999999999
Q ss_pred ccHHHHHHHHHHHHcCC
Q psy10443 166 RGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 166 ~~v~~~~~~l~~~~~~~ 182 (195)
.|++++|+.+.+.+.+.
T Consensus 144 ~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 144 TNVVKLFQDAIKLAVSY 160 (161)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999887654
No 59
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=2.5e-34 Score=195.36 Aligned_cols=158 Identities=28% Similarity=0.566 Sum_probs=137.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeC--CEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVD--GIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
+||+++|.+|+|||||+++++++.+...+.+|.+..+ ...+.++ +..+.+++||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999988888888876554 3445555 677899999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|||++++++++.+.. |+..+....+++|+++++||+|+... +.+..+++..+++.++ ++++++||+
T Consensus 81 v~d~~~~~s~~~l~~-~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa~ 146 (162)
T cd04106 81 VFSTTDRESFEAIES-WKEKVEAECGDIPMVLVQTKIDLLDQ------------AVITNEEAEALAKRLQ-LPLFRTSVK 146 (162)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhCCCCCEEEEEEChhcccc------------cCCCHHHHHHHHHHcC-CeEEEEECC
Confidence 999999999998874 88888877789999999999999765 3356677888888887 699999999
Q ss_pred CcccHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRA 178 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~ 178 (195)
+|.|++++|++|.+.
T Consensus 147 ~~~~v~~l~~~l~~~ 161 (162)
T cd04106 147 DDFNVTELFEYLAEK 161 (162)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998764
No 60
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=3.4e-34 Score=195.03 Aligned_cols=161 Identities=35% Similarity=0.593 Sum_probs=138.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+.+||+++|++|+|||||++++.+..+...+.++....+.....+++..+.+++||+||++++..++..+++++|++++|
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 35899999999999999999999988888888888766666677888889999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
||++++.+++.+.. |...+... ..+.|+++++||+|+... +.+..++..++++.++ ++++++||
T Consensus 81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 146 (164)
T cd04145 81 FSVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQ------------RKVSREEGQELARKLK-IPYIETSA 146 (164)
T ss_pred EECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCcccccc------------ceecHHHHHHHHHHcC-CcEEEeeC
Confidence 99999999998875 66666543 357899999999998654 2255567778888877 68999999
Q ss_pred CCcccHHHHHHHHHHHH
Q psy10443 163 LTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~ 179 (195)
++|.|++++|++|++.+
T Consensus 147 ~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 147 KDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999999999998764
No 61
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=2.8e-34 Score=195.44 Aligned_cols=160 Identities=32% Similarity=0.565 Sum_probs=138.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|||||||++++.+..+...+.+|..+.+.....+++..+.+.+||+||++++..++..+++++|++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999888888888877666677788888999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 87 VVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
++++++++.+.. |...+... ..+.|+++++||+|+... +....++...+++.++ .+++++||++
T Consensus 81 ~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (164)
T smart00173 81 ITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESE------------RVVSTEEGKELARQWG-CPFLETSAKE 146 (164)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccc------------ceEcHHHHHHHHHHcC-CEEEEeecCC
Confidence 999999998875 66655443 247899999999998764 2255567778888877 7899999999
Q ss_pred cccHHHHHHHHHHHHc
Q psy10443 165 QRGLRQVFDEAVRAVL 180 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~ 180 (195)
|.|++++|++|.+.+.
T Consensus 147 ~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 147 RVNVDEAFYDLVREIR 162 (164)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998764
No 62
>KOG0091|consensus
Probab=100.00 E-value=5.3e-35 Score=188.43 Aligned_cols=162 Identities=31% Similarity=0.515 Sum_probs=143.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccce-eEEe-CCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTV-DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
..++++++|++-+|||||++.|+.+.+++-.+||.+..+.. -+.+ .|..+++++|||+||++|++.+.+|+++.-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 57899999999999999999999999999999999766533 3333 688899999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh--CCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH--CPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (195)
+|||++|.+|++++.+ |......+ .|..+ ..+|++|+|+... |.++.++++.|+..++ ..+++
T Consensus 87 lvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq------------RqVt~EEaEklAa~hg-M~FVE 152 (213)
T KOG0091|consen 87 LVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQ------------RQVTAEEAEKLAASHG-MAFVE 152 (213)
T ss_pred EEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhh------------ccccHHHHHHHHHhcC-ceEEE
Confidence 9999999999999996 88777665 34444 4788999999977 7799999999999999 78999
Q ss_pred eccCCcccHHHHHHHHHHHHc
Q psy10443 160 CSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
+||++|.|+++.|.-|.+.+.
T Consensus 153 TSak~g~NVeEAF~mlaqeIf 173 (213)
T KOG0091|consen 153 TSAKNGCNVEEAFDMLAQEIF 173 (213)
T ss_pred ecccCCCcHHHHHHHHHHHHH
Confidence 999999999999999988775
No 63
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=6.5e-34 Score=194.78 Aligned_cols=162 Identities=31% Similarity=0.536 Sum_probs=138.7
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
.+..+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 45679999999999999999999999888777777765543 45667789999999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhh-----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHH-----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
++|||++++++++.+.. |...+... ..++|+++++||+|+.. +.+..++++++++.++..+
T Consensus 82 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~ 147 (170)
T cd04116 82 LLTFAVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVVLGNKNDIPE-------------RQVSTEEAQAWCRENGDYP 147 (170)
T ss_pred EEEEECCCHHHHHhHHH-HHHHHHHhcccccCCCCcEEEEEECccccc-------------cccCHHHHHHHHHHCCCCe
Confidence 99999999999998874 77655442 24689999999999863 3366778889999888678
Q ss_pred eEEeccCCcccHHHHHHHHHHH
Q psy10443 157 YMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
++++||++|.|+.++|..+++.
T Consensus 148 ~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 148 YFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 9999999999999999999864
No 64
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=5.1e-34 Score=195.03 Aligned_cols=161 Identities=30% Similarity=0.561 Sum_probs=136.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
||+++|.+|||||||+++|.++.+...+.||.+..+. ..+.+++..+.+++||+||+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999999999899999876653 566778889999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhh-CC-CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 87 VVSPSSFDNVTSKWYPELKHH-CP-DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~-~~-~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
+++++++..... |+..+... .+ +.|+++|+||+|+..... .....+++..+++.++ .+++++||++
T Consensus 82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~----------~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 149 (170)
T cd04108 82 LTDVASLEHTRQ-WLEDALKENDPSSVLLFLVGTKKDLSSPAQ----------YALMEQDAIKLAAEMQ-AEYWSVSALS 149 (170)
T ss_pred CcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEChhcCcccc----------ccccHHHHHHHHHHcC-CeEEEEECCC
Confidence 999999998874 88876543 33 578999999999865421 1134556778888887 5899999999
Q ss_pred cccHHHHHHHHHHHHc
Q psy10443 165 QRGLRQVFDEAVRAVL 180 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~ 180 (195)
|.|++++|+.+.+.+.
T Consensus 150 g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 150 GENVREFFFRVAALTF 165 (170)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998774
No 65
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=6.8e-34 Score=204.09 Aligned_cols=163 Identities=25% Similarity=0.428 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|||||||+++|+.+.+...+.+|..+.....+.+++..+.+++||++|++.|..++..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999998888899876666777889999999999999999998888888999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhh----------hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 87 VVSPSSFDNVTSKWYPELKH----------HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~----------~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
++++++++.+.. |...+.. ...++|+++|+||+|+... +.+..+++.+++.....+.
T Consensus 81 v~~~~Sf~~i~~-~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~------------~~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 81 LDNRESFEEVCR-LREQILETKSCLKNKTKENVKIPMVICGNKADRDFP------------REVQRDEVEQLVGGDENCA 147 (247)
T ss_pred CCCHHHHHHHHH-HHHHHHHhhcccccccccCCCCcEEEEEECccchhc------------cccCHHHHHHHHHhcCCCE
Confidence 999999998874 6666643 2357999999999999753 2356667777766544478
Q ss_pred eEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
++++||++|.|++++|.+|.+....+
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~~~p 173 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLAKLP 173 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhccc
Confidence 99999999999999999999977543
No 66
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=100.00 E-value=1.5e-33 Score=193.07 Aligned_cols=170 Identities=71% Similarity=1.216 Sum_probs=145.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|.+|+|||||+++|++..+...+.++...........++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 68999999999999999999999887788888877777777888889999999999999998888888999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR 166 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (195)
++++.++......|+..+....++.|+++|+||+|+.......... ......+..++..+++..++..+++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKL-EKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhc-ccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999999988777988888877789999999999998765432211 111233556778888888886699999999999
Q ss_pred cHHHHHHHHHH
Q psy10443 167 GLRQVFDEAVR 177 (195)
Q Consensus 167 ~v~~~~~~l~~ 177 (195)
|++++|.++.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 67
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6.9e-34 Score=193.74 Aligned_cols=161 Identities=27% Similarity=0.487 Sum_probs=138.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
+.+||+++|++|+|||||++++..+.+...+.++....+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999888777777765433 3456778888899999999999999989999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|||++++++++.+.. |+..+... .+++|+++|+||+|+... +....+++..+++.++...++++||
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~e~Sa 148 (165)
T cd01864 82 AYDITRRSSFESVPH-WIEEVEKYGASNVVLLLIGNKCDLEEQ------------REVLFEEACTLAEKNGMLAVLETSA 148 (165)
T ss_pred EEECcCHHHHHhHHH-HHHHHHHhCCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcCCcEEEEEEC
Confidence 999999999998874 88888765 357999999999999765 3356677888888888778999999
Q ss_pred CCcccHHHHHHHHHHH
Q psy10443 163 LTQRGLRQVFDEAVRA 178 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~ 178 (195)
++|.|++++|+++.+.
T Consensus 149 ~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 149 KESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999999875
No 68
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=2.4e-33 Score=195.66 Aligned_cols=165 Identities=24% Similarity=0.404 Sum_probs=132.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCcccccc--------CCCCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRL--------RPLSYPQ 77 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~--------~~~~~~~ 77 (195)
+||+|+|.+|||||||+++|.++.+...+.||+...+ .....+++..+.+.+||+||.+.+... ....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888886443 345667898899999999997654321 2345789
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhh----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHH----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
+|++|+|||++++++++.+.. |...+... .+++|+++|+||+|+... +.+..++.+.++.+..
T Consensus 81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~------------~~~~~~~~~~~~~~~~ 147 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRH------------RFAPRHVLSVLVRKSW 147 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECcccccc------------ccccHHHHHHHHHHhc
Confidence 999999999999999998874 76666543 367999999999999654 3355566666665443
Q ss_pred CceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
.++++++||++|.|++++|+.+++.+....+
T Consensus 148 ~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 148 KCGYLECSAKYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHhhccCC
Confidence 4789999999999999999999998775544
No 69
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.4e-33 Score=192.24 Aligned_cols=160 Identities=30% Similarity=0.550 Sum_probs=138.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
.+||+++|.+|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++++++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999999888777777776544 45667788888999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhCC-CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHCP-DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
+|++++.++..+. .|+..+....+ ++|+++|+||+|+... +.+..++...+++..+ ++++++||+
T Consensus 83 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~pi~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 148 (165)
T cd01868 83 YDITKKQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTEEAKAFAEKNG-LSFIETSAL 148 (165)
T ss_pred EECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------ccCCHHHHHHHHHHcC-CEEEEEECC
Confidence 9999999999888 48888877654 5999999999998764 3356677788888776 789999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRAV 179 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~ 179 (195)
+|.|++++|+++.+.+
T Consensus 149 ~~~~v~~l~~~l~~~i 164 (165)
T cd01868 149 DGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998875
No 70
>KOG0088|consensus
Probab=100.00 E-value=8.6e-35 Score=186.59 Aligned_cols=165 Identities=29% Similarity=0.578 Sum_probs=148.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
-.|||+++|..=+|||||+-+++.+.|...+..|....+ ...+.+.+....+.+|||+||++|+.+-+.|+++.+++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 468999999999999999999999999988888875554 6778888999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|||++|++||+.+.+ |...++... ..+-++||+||+|+.+. +.+..+++..++...+ ..++++||
T Consensus 92 VyDITDrdSFqKVKn-WV~Elr~mlGnei~l~IVGNKiDLEee------------R~Vt~qeAe~YAesvG-A~y~eTSA 157 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKN-WVLELRTMLGNEIELLIVGNKIDLEEE------------RQVTRQEAEAYAESVG-ALYMETSA 157 (218)
T ss_pred EEeccchHHHHHHHH-HHHHHHHHhCCeeEEEEecCcccHHHh------------hhhhHHHHHHHHHhhc-hhheeccc
Confidence 999999999999996 888887753 46889999999999877 6699999999999999 57999999
Q ss_pred CCcccHHHHHHHHHHHHcCCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+++.|+.++|+.|...+.+..
T Consensus 158 k~N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 158 KDNVGISELFESLTAKMIEHS 178 (218)
T ss_pred ccccCHHHHHHHHHHHHHHHh
Confidence 999999999999998876554
No 71
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.3e-33 Score=198.98 Aligned_cols=164 Identities=32% Similarity=0.559 Sum_probs=139.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEe-CCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTV-DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+ ++..+.+++||++|++.+..++..+++++|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 358999999999999999999999988877777775443 334444 467789999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
+|||+++++++.++.. |+..+.... ...|+++|+||+|+... +.+..++...+++.++ ++++++
T Consensus 81 lv~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~ 146 (211)
T cd04111 81 LVFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQ------------RQVTREEAEKLAKDLG-MKYIET 146 (211)
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEccccccc------------cccCHHHHHHHHHHhC-CEEEEE
Confidence 9999999999999985 888776542 35788999999999764 3467778888999888 799999
Q ss_pred ccCCcccHHHHHHHHHHHHcCC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
||++|.|++++|++|.+.+++.
T Consensus 147 Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 147 SARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999987644
No 72
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=2.9e-33 Score=191.21 Aligned_cols=162 Identities=32% Similarity=0.557 Sum_probs=140.2
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
++||+++|.+|||||||+++|.++.+...+.++....+.....+++..+.+.+||+||+++|..++..+++.++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 47999999999999999999999998888888887666666778888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|++++++++.... |...+... ..++|+++++||.|+... +....++...+++.++.++++++||+
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~SA~ 147 (168)
T cd04177 81 SVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDD------------RQVSREDGVSLSQQWGNVPFYETSAR 147 (168)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhcccc------------CccCHHHHHHHHHHcCCceEEEeeCC
Confidence 9999999998875 77766543 357999999999998654 33556667777888776789999999
Q ss_pred CcccHHHHHHHHHHHHc
Q psy10443 164 TQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~ 180 (195)
++.|++++|.++...+.
T Consensus 148 ~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 148 KRTNVDEVFIDLVRQII 164 (168)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999987553
No 73
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.7e-33 Score=199.26 Aligned_cols=163 Identities=31% Similarity=0.529 Sum_probs=142.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
..+||+++|++|||||||+++|.+..+...+.+|.+..+ ...+.+++..+.+++||++|++++..++..++++++++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 458999999999999999999999988777778876554 4667788888999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|||++++++++.+.. |+..+.... .++|+++|+||+|+... +.+..++...++..++ ++++++||
T Consensus 91 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piiiv~nK~Dl~~~------------~~~~~~~~~~l~~~~~-~~~~e~SA 156 (216)
T PLN03110 91 VYDITKRQTFDNVQR-WLRELRDHADSNIVIMMAGNKSDLNHL------------RSVAEEDGQALAEKEG-LSFLETSA 156 (216)
T ss_pred EEECCChHHHHHHHH-HHHHHHHhCCCCCeEEEEEEChhcccc------------cCCCHHHHHHHHHHcC-CEEEEEeC
Confidence 999999999998874 888877654 57999999999998654 3466677888888776 79999999
Q ss_pred CCcccHHHHHHHHHHHHcC
Q psy10443 163 LTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~ 181 (195)
++|.|++++|+++.+.+.+
T Consensus 157 ~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 157 LEATNVEKAFQTILLEIYH 175 (216)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 74
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=2.1e-33 Score=197.96 Aligned_cols=168 Identities=28% Similarity=0.548 Sum_probs=144.6
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCcc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTD 79 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d 79 (195)
|.....+||+++|++|+|||||+++|+...+...+.+|....+ ...+.+++..+.+.+||++|++.+...+..+++.+|
T Consensus 1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad 80 (210)
T PLN03108 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 7777789999999999999999999999888777777765544 445677888899999999999999988899999999
Q ss_pred EEEEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 80 VFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
++++|||+++++++..+.. |+..+... .++.|+++++||+|+... +.+..++.+++++.++ ++++
T Consensus 81 ~~vlv~D~~~~~s~~~l~~-~~~~~~~~~~~~~piiiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~ 146 (210)
T PLN03108 81 GALLVYDITRRETFNHLAS-WLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHG-LIFM 146 (210)
T ss_pred EEEEEEECCcHHHHHHHHH-HHHHHHHhcCCCCcEEEEEECccCccc------------cCCCHHHHHHHHHHcC-CEEE
Confidence 9999999999999998874 77766544 367999999999999764 3467788889999887 6899
Q ss_pred EeccCCcccHHHHHHHHHHHHcCC
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
++||+++.|++++|.++++.+++.
T Consensus 147 e~Sa~~~~~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 147 EASAKTAQNVEEAFIKTAAKIYKK 170 (210)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999888653
No 75
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.5e-33 Score=196.46 Aligned_cols=155 Identities=30% Similarity=0.520 Sum_probs=133.5
Q ss_pred EcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCCh
Q psy10443 12 VGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSP 90 (195)
Q Consensus 12 ~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 90 (195)
+|++|||||||+++|+.+.+...+.+|.+..+ ...+.+++..+.+.+||++|+++|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888888888886554 45567788899999999999999999999999999999999999999
Q ss_pred hcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHH
Q psy10443 91 SSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQ 170 (195)
Q Consensus 91 ~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 170 (195)
.++..+.. |+..+....+++|+++|+||+|+... .+..+. ..+++..+ +++++|||++|.|+++
T Consensus 81 ~S~~~i~~-w~~~i~~~~~~~piilvgNK~Dl~~~-------------~v~~~~-~~~~~~~~-~~~~e~SAk~~~~v~~ 144 (200)
T smart00176 81 VTYKNVPN-WHRDLVRVCENIPIVLCGNKVDVKDR-------------KVKAKS-ITFHRKKN-LQYYDISAKSNYNFEK 144 (200)
T ss_pred HHHHHHHH-HHHHHHHhCCCCCEEEEEECcccccc-------------cCCHHH-HHHHHHcC-CEEEEEeCCCCCCHHH
Confidence 99999874 99988887778999999999998542 133333 35666666 7899999999999999
Q ss_pred HHHHHHHHHcCC
Q psy10443 171 VFDEAVRAVLRP 182 (195)
Q Consensus 171 ~~~~l~~~~~~~ 182 (195)
+|.+|++.+.+.
T Consensus 145 ~F~~l~~~i~~~ 156 (200)
T smart00176 145 PFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHhc
Confidence 999999988654
No 76
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=3.9e-33 Score=194.63 Aligned_cols=166 Identities=29% Similarity=0.518 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCC-Ccccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPG-EYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+||+|+|.+|||||||+++|+++.+.. .+.+|.+..+ ...+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988864 6777876655 34677889999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
||++++++++.+. .|+..+....++.|+++|+||+|+..... ..+.+..+++..++..++ .+++++||++
T Consensus 81 ~d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~~~--------~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 150 (193)
T cd04118 81 YDLTDSSSFERAK-FWVKELQNLEEHCKIYLCGTKSDLIEQDR--------SLRQVDFHDVQDFADEIK-AQHFETSSKT 150 (193)
T ss_pred EECCCHHHHHHHH-HHHHHHHhcCCCCCEEEEEEccccccccc--------ccCccCHHHHHHHHHHcC-CeEEEEeCCC
Confidence 9999999998886 48888877667899999999999864321 012345567778888877 6899999999
Q ss_pred cccHHHHHHHHHHHHcCC
Q psy10443 165 QRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~~~ 182 (195)
|.|++++|+++.+.+.+.
T Consensus 151 ~~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 151 GQNVDELFQKVAEDFVSR 168 (193)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999877543
No 77
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=2e-33 Score=191.50 Aligned_cols=159 Identities=36% Similarity=0.547 Sum_probs=135.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccc-cccCCCCCCCccEEEEEEe
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY-DRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~-~~~~~~~~~~~d~~i~v~d 86 (195)
||+++|++|+|||||+++++.+.+...+.++....+.....+++..+.+++||+||++.+ ......+++.+|++|+|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 689999999999999999999888888888876666666778889999999999999853 4456678899999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 87 VVSPSSFDNVTSKWYPELKHH---CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
++++++++.+.. |...+... ..++|+++|+||+|+... +.+..+++..+++.++ .+++++||+
T Consensus 81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sa~ 146 (165)
T cd04146 81 ITDRSSFDEISQ-LKQLIREIKKRDREIPVILVGNKADLLHY------------RQVSTEEGEKLASELG-CLFFEVSAA 146 (165)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCchHHh------------CccCHHHHHHHHHHcC-CEEEEeCCC
Confidence 999999998874 77777664 347999999999998654 3466778888998888 789999999
Q ss_pred Cc-ccHHHHHHHHHHHHc
Q psy10443 164 TQ-RGLRQVFDEAVRAVL 180 (195)
Q Consensus 164 ~~-~~v~~~~~~l~~~~~ 180 (195)
+| .|++++|..+++.+.
T Consensus 147 ~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 147 EDYDGVHSVFHELCREVR 164 (165)
T ss_pred CCchhHHHHHHHHHHHHh
Confidence 99 599999999998664
No 78
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=4.2e-33 Score=190.40 Aligned_cols=162 Identities=28% Similarity=0.553 Sum_probs=139.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
.+||+++|.+|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++++|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999888777777765444 34566788888999999999999999888999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
+|++++++++.+.. |+..+... .++.|+++++||.|+... +.+..++...++...+ ++++++||+
T Consensus 84 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~pvivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~ 149 (168)
T cd01866 84 YDITRRETFNHLTS-WLEDARQHSNSNMTIMLIGNKCDLESR------------REVSYEEGEAFAKEHG-LIFMETSAK 149 (168)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeCC
Confidence 99999999999885 88877664 478999999999998754 3366677888888887 689999999
Q ss_pred CcccHHHHHHHHHHHHcC
Q psy10443 164 TQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~ 181 (195)
++.|++++|.++.+.+.+
T Consensus 150 ~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 150 TASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987753
No 79
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=3.4e-33 Score=190.81 Aligned_cols=164 Identities=22% Similarity=0.292 Sum_probs=135.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
.+.+||+++|++|||||||+++|+++.+. .++.||.+..+. ..+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35689999999999999999999999998 888998876653 4567788888999999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
++|+|++++.+++.+.. |...+.. ..++|+++|+||+|+.+.. .....+..++++.++...++++|
T Consensus 82 llv~d~~~~~s~~~~~~-~~~~~~~-~~~~p~iiv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~S 147 (169)
T cd01892 82 CLVYDSSDPKSFSYCAE-VYKKYFM-LGEIPCLFVAAKADLDEQQ------------QRYEVQPDEFCRKLGLPPPLHFS 147 (169)
T ss_pred EEEEeCCCHHHHHHHHH-HHHHhcc-CCCCeEEEEEEcccccccc------------cccccCHHHHHHHcCCCCCEEEE
Confidence 99999999999988764 6665532 2379999999999986542 12223456677777744579999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
|++|.|++++|+.+.+.+..
T Consensus 148 a~~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 148 SKLGDSSNELFTKLATAAQY 167 (169)
T ss_pred eccCccHHHHHHHHHHHhhC
Confidence 99999999999999998764
No 80
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=3.4e-33 Score=189.57 Aligned_cols=158 Identities=27% Similarity=0.526 Sum_probs=136.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|||||||+++|.++.+...+.++....+ .....+++..+.+++||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999888777777765443 345677888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|+++++++..+.. |+..+... .+++|+++++||+|+... +.+..+++..+++..+ ++++++||++
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (161)
T cd04113 81 DITNRTSFEALPT-WLSDARALASPNIVVILVGNKSDLADQ------------REVTFLEASRFAQENG-LLFLETSALT 146 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEEchhcchh------------ccCCHHHHHHHHHHcC-CEEEEEECCC
Confidence 9999999998874 87777654 478999999999999764 3366778888888888 8999999999
Q ss_pred cccHHHHHHHHHHH
Q psy10443 165 QRGLRQVFDEAVRA 178 (195)
Q Consensus 165 ~~~v~~~~~~l~~~ 178 (195)
+.|++++|.++++.
T Consensus 147 ~~~i~~~~~~~~~~ 160 (161)
T cd04113 147 GENVEEAFLKCARS 160 (161)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999875
No 81
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=7.7e-33 Score=189.43 Aligned_cols=161 Identities=30% Similarity=0.552 Sum_probs=137.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCcccc-ccCCCCCCCccEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYD-RLRPLSYPQTDVFL 82 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~-~~~~~~~~~~d~~i 82 (195)
+.+||+++|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+||++|++++. .++..+++++|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 358999999999999999999999888777777765443 4566778888999999999999886 56888899999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
+|||++++++++.+.. |+..+.... .++|+++|+||+|+... +.+..++..+++.... ++++++
T Consensus 81 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~ 146 (170)
T cd04115 81 FVYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCDLREQ------------IQVPTDLAQRFADAHS-MPLFET 146 (170)
T ss_pred EEEECCCHHHHHhHHH-HHHHHHHhcCCCCCCEEEEEECccchhh------------cCCCHHHHHHHHHHcC-CcEEEE
Confidence 9999999999999974 888777643 57999999999998765 3366677888888876 789999
Q ss_pred ccCC---cccHHHHHHHHHHHH
Q psy10443 161 SALT---QRGLRQVFDEAVRAV 179 (195)
Q Consensus 161 Sa~~---~~~v~~~~~~l~~~~ 179 (195)
||++ +.|++++|..+++.+
T Consensus 147 Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 147 SAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred eccCCcCCCCHHHHHHHHHHHh
Confidence 9999 899999999998765
No 82
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=8.8e-33 Score=188.01 Aligned_cols=161 Identities=32% Similarity=0.618 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|+|||||++++.+..+...+.++....+ .....+++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999887766666665543 345667888889999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|++++++++.+.. |+..+.... +++|+++++||+|+... +....+.+..+++.++ ++++++|+++
T Consensus 81 d~~~~~s~~~~~~-~l~~~~~~~~~~~pivvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 146 (164)
T smart00175 81 DITNRESFENLKN-WLKELREYADPNVVIMLVGNKSDLEDQ------------RQVSREEAEAFAEEHG-LPFFETSAKT 146 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEEchhcccc------------cCCCHHHHHHHHHHcC-CeEEEEeCCC
Confidence 9999999998875 888877654 68999999999998764 3356677888888887 7899999999
Q ss_pred cccHHHHHHHHHHHHcC
Q psy10443 165 QRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~~ 181 (195)
|.|++++++++.+.+.+
T Consensus 147 ~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 147 NTNVEEAFEELAREILK 163 (164)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999988754
No 83
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.1e-32 Score=187.41 Aligned_cols=160 Identities=30% Similarity=0.583 Sum_probs=138.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
++||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999988776777766544 45677888899999999999999998888999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
+|+++++++..... |+..+.... +++|+++++||+|+... +....++...++...+ ++++++||+
T Consensus 81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 146 (163)
T cd01860 81 YDITSEESFEKAKS-WVKELQRNASPNIIIALVGNKADLESK------------RQVSTEEAQEYADENG-LLFFETSAK 146 (163)
T ss_pred EECcCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc------------CcCCHHHHHHHHHHcC-CEEEEEECC
Confidence 99999999998874 877776654 77999999999998753 3355667778888887 789999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRAV 179 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~ 179 (195)
+|.|++++|++|.+.+
T Consensus 147 ~~~~v~~l~~~l~~~l 162 (163)
T cd01860 147 TGENVNELFTEIAKKL 162 (163)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999876
No 84
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=100.00 E-value=2e-32 Score=189.01 Aligned_cols=176 Identities=28% Similarity=0.454 Sum_probs=143.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
.||+++|.+|+|||||++++..+.+...+.|+....+.....+++..+.+.+||+||++++...+..++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 68999999999999999999998887778888776666677788888899999999999999888889999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
+++..+++.+...|...+... ..+.|+++++||+|+... +....++...+++.++ .+++++||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 148 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQ------------RQVSTEEGKELAESWG-AAFLESSAREN 148 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhc------------CccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 999999998886444444432 357899999999998653 2244555667777777 68999999999
Q ss_pred ccHHHHHHHHHHHHcCCCccc--cCCCceeeC
Q psy10443 166 RGLRQVFDEAVRAVLRPEPVK--RRQRKCVII 195 (195)
Q Consensus 166 ~~v~~~~~~l~~~~~~~~~~~--~~~~~c~~~ 195 (195)
.|+.++|.++.+.+....... ..+++|.||
T Consensus 149 ~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (180)
T cd04137 149 ENVEEAFELLIEEIEKVENPLDPGQKKKCSIM 180 (180)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCCCCceeC
Confidence 999999999999776554322 334679886
No 85
>KOG0395|consensus
Probab=100.00 E-value=1.3e-32 Score=190.31 Aligned_cols=163 Identities=37% Similarity=0.588 Sum_probs=149.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+.+||+++|.+|+|||+|..+|....|.+.|+||.++.+.....+++..+.+.++|++|++++..+...++++++++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHH-hhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 85 YSVVSPSSFDNVTSKWYPEL-KHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~-~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+++++.||+.+.. +...+ +.. ...+|+++|+||+|+... +.+..++++.++..++ ++++++||
T Consensus 82 ysitd~~SF~~~~~-l~~~I~r~~~~~~~PivlVGNK~Dl~~~------------R~V~~eeg~~la~~~~-~~f~E~Sa 147 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQ-LREQILRVKGRDDVPIILVGNKCDLERE------------RQVSEEEGKALARSWG-CAFIETSA 147 (196)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhCcCCCCEEEEEEcccchhc------------cccCHHHHHHHHHhcC-CcEEEeec
Confidence 99999999999986 55555 333 346899999999999886 5688999999999998 57999999
Q ss_pred CCcccHHHHHHHHHHHHcC
Q psy10443 163 LTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~ 181 (195)
+.+.+++++|..|++.+-.
T Consensus 148 k~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 148 KLNYNVDEVFYELVREIRL 166 (196)
T ss_pred cCCcCHHHHHHHHHHHHHh
Confidence 9999999999999997765
No 86
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=4.1e-33 Score=190.20 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=121.5
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.++.+||+++|++|||||||+++|..+.+. .+.||.+..+. ... ...+.+.+||+||++++..++..+++++|++|
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 357899999999999999999999987764 35666654432 222 34578889999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH--c--CCcee
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK--I--RAVKY 157 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~ 157 (195)
+|||++++.++.+....|...+... .+++|+++|+||+|+... +..+++..+... . ..+++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~ 147 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--------------MKPHEIQEKLGLTRIRDRNWYV 147 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--------------CCHHHHHHHcCCCccCCCcEEE
Confidence 9999999999988876455555443 467999999999998643 233444444321 1 12468
Q ss_pred EEeccCCcccHHHHHHHHHH
Q psy10443 158 MECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~ 177 (195)
+++||++|.|++++|.+|.+
T Consensus 148 ~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 148 QPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EEeeCCCCCChHHHHHHHhc
Confidence 99999999999999999864
No 87
>KOG0083|consensus
Probab=100.00 E-value=1.5e-34 Score=180.52 Aligned_cols=159 Identities=31% Similarity=0.607 Sum_probs=143.1
Q ss_pred EEcCCCCchHHHHHHhhcCCC-CCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCC
Q psy10443 11 VVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVV 88 (195)
Q Consensus 11 v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 88 (195)
++|++++|||+|+-++..+.| ..+..+|.+..+ ...+.+++.++++++||++||++|++.+..|++.+|+++++||++
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 689999999999999988876 466777776666 456788999999999999999999999999999999999999999
Q ss_pred ChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCccc
Q psy10443 89 SPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRG 167 (195)
Q Consensus 89 ~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (195)
+..|++.... |+..+.++. ..+.+.+++||+|+.++ +.+..++.+.++..++ +|++++||++|.|
T Consensus 82 nkasfdn~~~-wlsei~ey~k~~v~l~llgnk~d~a~e------------r~v~~ddg~kla~~y~-ipfmetsaktg~n 147 (192)
T KOG0083|consen 82 NKASFDNCQA-WLSEIHEYAKEAVALMLLGNKCDLAHE------------RAVKRDDGEKLAEAYG-IPFMETSAKTGFN 147 (192)
T ss_pred cchhHHHHHH-HHHHHHHHHHhhHhHhhhccccccchh------------hccccchHHHHHHHHC-CCceecccccccc
Confidence 9999999985 999999875 46889999999999887 6688899999999999 8999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q psy10443 168 LRQVFDEAVRAVLRPE 183 (195)
Q Consensus 168 v~~~~~~l~~~~~~~~ 183 (195)
++-.|..|.+.+.+.+
T Consensus 148 vd~af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 148 VDLAFLAIAEELKKLK 163 (192)
T ss_pred HhHHHHHHHHHHHHhc
Confidence 9999999999876443
No 88
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=3.4e-32 Score=186.54 Aligned_cols=163 Identities=31% Similarity=0.582 Sum_probs=136.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|||||||++++.+..+...+.++....+ .....+++..+.+.+||+||++.+..++..+++++|++|+|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999888777777765443 445677888899999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC-----CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC-----PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
|++++.+++... .|...+.... .++|+++++||+|+..+ +....++...+++..+.++++++
T Consensus 81 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 147 (172)
T cd01862 81 DVTNPKSFESLD-SWRDEFLIQASPSDPENFPFVVLGNKIDLEEK------------RQVSTKKAQQWCQSNGNIPYFET 147 (172)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCccCCCCceEEEEEECcccccc------------cccCHHHHHHHHHHcCCceEEEE
Confidence 999999988776 3766554432 37999999999999753 22556677788888876799999
Q ss_pred ccCCcccHHHHHHHHHHHHcCC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
|+++|.|++++|+++.+.+.+.
T Consensus 148 Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 148 SAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred ECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999987665
No 89
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=3e-32 Score=185.82 Aligned_cols=164 Identities=29% Similarity=0.460 Sum_probs=129.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|||||||+++|..+.++..+.++ ...+.....+++..+.+.+||+||++.+...+..++..+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 48999999999999999999999887654443 33334444566778899999999999888777788899999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC-ceeEEeccCCc
Q psy10443 87 VVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA-VKYMECSALTQ 165 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 165 (195)
++++++++.+...|...++...++.|+++|+||+|+.+..... ...++...+...+.. .+++++||++|
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~----------~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 149 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQA----------GLEEEMLPIMNEFREIETCVECSAKTL 149 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchh----------HHHHHHHHHHHHHhcccEEEEeccccc
Confidence 9999999998666888887766789999999999997643210 012233333344432 37999999999
Q ss_pred ccHHHHHHHHHHHHcC
Q psy10443 166 RGLRQVFDEAVRAVLR 181 (195)
Q Consensus 166 ~~v~~~~~~l~~~~~~ 181 (195)
.|++++|+.+.+.+.+
T Consensus 150 ~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 150 INVSEVFYYAQKAVLH 165 (166)
T ss_pred cCHHHHHHHHHHHhcC
Confidence 9999999999988765
No 90
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=3.3e-32 Score=185.26 Aligned_cols=159 Identities=31% Similarity=0.567 Sum_probs=132.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC--CCCCCcccceeecc-ceeEEe-CCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD--SFPGEYVPTVFDNY-SAPFTV-DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~--~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+||+++|++|||||||++++... .+..++.+|.+..+ .....+ .+..+.+.+||+||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 67788888875554 233444 367789999999999999988899999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|+|+++++++..+. .|+..+.....+.|+++|+||+|+... ..+...+.+.+...++ ++++++||
T Consensus 81 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 146 (164)
T cd04101 81 LVYDVSNKASFENCS-RWVNKVRTASKHMPGVLVGNKMDLADK------------AEVTDAQAQAFAQANQ-LKFFKTSA 146 (164)
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CeEEEEeC
Confidence 999999999998886 488888776677999999999998654 2245555666777776 68999999
Q ss_pred CCcccHHHHHHHHHHHH
Q psy10443 163 LTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~ 179 (195)
+++.|++++|+.+.+.+
T Consensus 147 ~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 147 LRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCCChHHHHHHHHHHh
Confidence 99999999999998865
No 91
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=5.4e-32 Score=192.02 Aligned_cols=158 Identities=29% Similarity=0.426 Sum_probs=130.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCC-CCccccee-eccceeEEeCCEEEEEEEEeCCCCccccccCCCCCC-CccEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVF-DNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYP-QTDVFLI 83 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~-~~d~~i~ 83 (195)
+||+++|++|||||||+++|..+.+. ..+.++.. +.....+.+++..+.+.+||+||++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999888775 66666665 44456677888889999999999982 33345666 9999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||++++.++..+.. |+..+.... .++|+++|+||+|+... +.+..++...++..++ ++++++|
T Consensus 79 V~d~td~~S~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~e~S 144 (221)
T cd04148 79 VYSVTDRSSFERASE-LRIQLRRNRQLEDRPIILVGNKSDLARS------------REVSVQEGRACAVVFD-CKFIETS 144 (221)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhcccc------------ceecHHHHHHHHHHcC-CeEEEec
Confidence 999999999998875 777776543 57999999999998765 3366667778888777 6899999
Q ss_pred cCCcccHHHHHHHHHHHHc
Q psy10443 162 ALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~ 180 (195)
|+++.|++++|+++++.+.
T Consensus 145 A~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 145 AGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999875
No 92
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=6.2e-32 Score=183.34 Aligned_cols=158 Identities=32% Similarity=0.565 Sum_probs=133.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeec-cceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|.+|||||||++++++..+...+.++.... ....+.+++..+.+.+||+||++.+..++..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999988876666666544 3455667788889999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|++++++++.+.. |+..+.... .+.|+++++||+|+... +....++...+++..+ ++++++||++
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~iilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (161)
T cd01861 81 DITNRQSFDNTDK-WIDDVRDERGNDVIIVLVGNKTDLSDK------------RQVSTEEGEKKAKELN-AMFIETSAKA 146 (161)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhCCCCCEEEEEEEChhcccc------------CccCHHHHHHHHHHhC-CEEEEEeCCC
Confidence 9999999999874 777766543 46999999999999643 3355667777777777 7899999999
Q ss_pred cccHHHHHHHHHHH
Q psy10443 165 QRGLRQVFDEAVRA 178 (195)
Q Consensus 165 ~~~v~~~~~~l~~~ 178 (195)
+.|++++++++.+.
T Consensus 147 ~~~v~~l~~~i~~~ 160 (161)
T cd01861 147 GHNVKELFRKIASA 160 (161)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999875
No 93
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=7.4e-32 Score=190.51 Aligned_cols=164 Identities=30% Similarity=0.560 Sum_probs=137.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
..+||+|+|.+|||||||+++|+.+.+ ..+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++++|++|+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 468999999999999999999998876 35566665443 3456677888999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|||++++++++.+...|...+... ..+.|+++|+||+|+... +.+..++...++...+ ++++++|
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~------------~~i~~~~~~~~~~~~~-~~~~e~S 158 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE------------RDVSREEGMALAKEHG-CLFLECS 158 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------------CccCHHHHHHHHHHcC-CEEEEEe
Confidence 999999999999876677766543 346899999999998754 2355667777888877 6899999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|+++.|++++|++|.+.+.+.
T Consensus 159 Ak~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 159 AKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999887644
No 94
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=7.7e-32 Score=183.33 Aligned_cols=160 Identities=33% Similarity=0.555 Sum_probs=136.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|++|||||||+++++...+...+.++....+.....+++..+.+.+||+||++.+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999999888888888877777777888888999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 87 VVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
++++.++..... |...+... ..++|+++|+||+|+... +.....+...+...++ .+++++||++
T Consensus 81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (164)
T cd04139 81 ITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDK------------RQVSSEEAANLARQWG-VPYVETSAKT 146 (164)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEccccccc------------cccCHHHHHHHHHHhC-CeEEEeeCCC
Confidence 999999988876 55544443 357999999999998763 1244456667777777 6899999999
Q ss_pred cccHHHHHHHHHHHHc
Q psy10443 165 QRGLRQVFDEAVRAVL 180 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~ 180 (195)
|.|++++|+++.+.+.
T Consensus 147 ~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 147 RQNVEKAFYDLVREIR 162 (164)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998764
No 95
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=1.2e-31 Score=181.92 Aligned_cols=159 Identities=30% Similarity=0.604 Sum_probs=133.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|.+|+|||||+++|+++.+...+.++..... .....+.+..+.+.+||+||++.+..++..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999888766666664433 445666778889999999999999999999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|++++++++.... |+..+.... .++|+++++||+|+... +.+..++..++.+..+ .+++++|+++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~~ 146 (162)
T cd04123 81 DITDADSFQKVKK-WIKELKQMRGNNISLVIVGNKIDLERQ------------RVVSKSEAEEYAKSVG-AKHFETSAKT 146 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCeEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 9999999988875 777776653 37999999999998754 2355566777777777 6899999999
Q ss_pred cccHHHHHHHHHHHH
Q psy10443 165 QRGLRQVFDEAVRAV 179 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~ 179 (195)
++|++++++++.+.+
T Consensus 147 ~~gi~~~~~~l~~~~ 161 (162)
T cd04123 147 GKGIEELFLSLAKRM 161 (162)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998865
No 96
>KOG0081|consensus
Probab=100.00 E-value=3.2e-34 Score=184.12 Aligned_cols=163 Identities=33% Similarity=0.565 Sum_probs=144.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEe---------CCEEEEEEEEeCCCCccccccCCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTV---------DGIPVSLGLWDTAGQEDYDRLRPLSY 75 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~---------~~~~~~l~~~D~~G~~~~~~~~~~~~ 75 (195)
-+|.+.+|++||||||++.+++.+.|..+...|.+..+. +.+.+ .+..+.+++||++||++|++++..++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 368889999999999999999999999999999877764 33333 24668899999999999999999999
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
+.|=++++++|+++..|+.++.+ |+..+..+ ..+..+++++||+|+... +.++.+++..++.+++
T Consensus 89 RDAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~------------R~Vs~~qa~~La~kyg 155 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQ------------RVVSEDQAAALADKYG 155 (219)
T ss_pred HhhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhh------------hhhhHHHHHHHHHHhC
Confidence 99999999999999999999997 99988764 578999999999999877 6688899999999999
Q ss_pred CceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+|+|++||-+|.|+++..+.+...+++.
T Consensus 156 -lPYfETSA~tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 156 -LPYFETSACTGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred -CCeeeeccccCcCHHHHHHHHHHHHHHH
Confidence 8999999999999999999888877644
No 97
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=2.5e-31 Score=180.43 Aligned_cols=157 Identities=36% Similarity=0.625 Sum_probs=133.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998876666777655443 34566788889999999999999988899999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|++++.+++.+.. |+..+... .++.|+++++||+|+... ....++...++...+ ++++++||+
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~~~-------------~~~~~~~~~~~~~~~-~~~~~~Sa~ 145 (161)
T cd01863 81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKENR-------------EVTREEGLKFARKHN-MLFIETSAK 145 (161)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCccccc-------------ccCHHHHHHHHHHcC-CEEEEEecC
Confidence 9999999998875 88877765 357999999999999733 245567778888876 789999999
Q ss_pred CcccHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRA 178 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~ 178 (195)
+|.|++++++.+.+.
T Consensus 146 ~~~gi~~~~~~~~~~ 160 (161)
T cd01863 146 TRDGVQQAFEELVEK 160 (161)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998875
No 98
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=4e-32 Score=187.27 Aligned_cols=161 Identities=17% Similarity=0.195 Sum_probs=121.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+++|.+|||||||++++..+.+. .+.||.+..+. .+. ...+.+++||+||++.+..+|..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 56799999999999999999999987775 45677655432 233 345778899999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc----CCceeE
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI----RAVKYM 158 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 158 (195)
|+|+++++++..+...+...+.. ..+++|++|++||+|+.... ..++......-. ..+.++
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--------------~~~~~~~~l~l~~~~~~~~~~~ 156 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRQRHWYIQ 156 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--------------CHHHHHHHhCccccCCCceEEE
Confidence 99999999998887544444433 24679999999999986542 222222211100 113467
Q ss_pred EeccCCcccHHHHHHHHHHHHcCC
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
++||++|+|++++|++|.+.+.++
T Consensus 157 ~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 157 STCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred eccCCCCCCHHHHHHHHHHHHhhc
Confidence 899999999999999999887653
No 99
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=7.4e-32 Score=186.16 Aligned_cols=166 Identities=18% Similarity=0.256 Sum_probs=122.3
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+++.+||+++|++|||||||++++..+.+.. +.||.+..+. .+.. ..+.+.+||+||++.+..++..+++++|++|
T Consensus 14 ~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 14 GKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 3567999999999999999999998877754 5667654432 2333 4577889999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+|+++++++......+...+.. ...+.|+++++||.|+............... ...+.. .+.++++|
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~---------~~~~~~-~~~~~~~S 159 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGL---------HSVRQR-NWYIQGCC 159 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCC---------CcccCC-cEEEEeee
Confidence 999999999998887645555443 2357899999999998653211110000000 001111 14577999
Q ss_pred cCCcccHHHHHHHHHHHHcCC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~ 182 (195)
|++|.|++++|++|.+.+.+.
T Consensus 160 a~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 160 ATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999877653
No 100
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=7.8e-32 Score=185.12 Aligned_cols=157 Identities=19% Similarity=0.228 Sum_probs=119.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.+||+++|++|||||||++++..+.+. .+.||.+..+. .... ..+.+.+||+||++.+..++..+++++|++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 56799999999999999999999877764 46677655442 2333 34778899999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH-----HHcCCcee
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA-----NKIRAVKY 157 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 157 (195)
|+|+++++++....+.|...+... .+++|++||+||+|+.... ..+++.... .... +.+
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~-~~~ 151 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--------------KAAEITEKLGLHSIRDRN-WYI 151 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--------------CHHHHHHHhCccccCCCc-EEE
Confidence 999999999988876444444432 4679999999999986542 112221111 1112 457
Q ss_pred EEeccCCcccHHHHHHHHHHHH
Q psy10443 158 MECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
+++||++|.|++++|++|.+.+
T Consensus 152 ~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 152 QPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998765
No 101
>KOG0097|consensus
Probab=99.98 E-value=7e-32 Score=170.35 Aligned_cols=164 Identities=26% Similarity=0.517 Sum_probs=148.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.-+|-+++|+-|+|||+|+++|+...|-...+.|.+..+ +..+.+.+.++++++||++|+++|+...++|++++.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 458999999999999999999999998888888887776 4567889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|||++.+..+.++.. |+...+.. +|+..+++++||.|+... +.+..+++.+|+.+.+ +-++++||
T Consensus 90 vyditrrstynhlss-wl~dar~ltnpnt~i~lignkadle~q------------rdv~yeeak~faeeng-l~fle~sa 155 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSS-WLTDARNLTNPNTVIFLIGNKADLESQ------------RDVTYEEAKEFAEENG-LMFLEASA 155 (215)
T ss_pred EEEehhhhhhhhHHH-HHhhhhccCCCceEEEEecchhhhhhc------------ccCcHHHHHHHHhhcC-eEEEEecc
Confidence 999999999999875 98887765 689999999999999877 6699999999999999 78999999
Q ss_pred CCcccHHHHHHHHHHHHcCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~ 182 (195)
++|.|+++.|..-.+.++..
T Consensus 156 ktg~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 156 KTGQNVEDAFLETAKKIYQN 175 (215)
T ss_pred cccCcHHHHHHHHHHHHHHh
Confidence 99999999999888887644
No 102
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.98 E-value=2.8e-31 Score=179.80 Aligned_cols=157 Identities=36% Similarity=0.617 Sum_probs=135.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
||+++|++|||||||++++++..+...+.++..........+++..+.+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999988888888888766666677787888999999999999988888999999999999999
Q ss_pred CChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 88 VSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
++++++..+.. |...+.... .++|+++++||+|+... +....+++..+...++ .+++++|++++
T Consensus 81 ~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~~~~ 146 (160)
T cd00876 81 TDRESFEEIKG-YREQILRVKDDEDIPIVLVGNKCDLENE------------RQVSKEEGKALAKEWG-CPFIETSAKDN 146 (160)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCccccc------------ceecHHHHHHHHHHcC-CcEEEeccCCC
Confidence 99999998875 555555443 48999999999998764 2356677888888877 78999999999
Q ss_pred ccHHHHHHHHHHH
Q psy10443 166 RGLRQVFDEAVRA 178 (195)
Q Consensus 166 ~~v~~~~~~l~~~ 178 (195)
.|++++|++|.+.
T Consensus 147 ~~i~~l~~~l~~~ 159 (160)
T cd00876 147 INIDEVFKLLVRE 159 (160)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999875
No 103
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.98 E-value=7.7e-31 Score=183.58 Aligned_cols=161 Identities=27% Similarity=0.436 Sum_probs=131.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
||+++|.+|||||||+++|+.+.+...+.++........+.+++..+.+++||+||+..+..++..++..+|++|+|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999998887777887655556677888889999999999999998888999999999999999
Q ss_pred CChhcHHHHHHhhHHHHhhhC--CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 88 VSPSSFDNVTSKWYPELKHHC--PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
+++.+++.+.. |...+.... .++|+++++||+|+.... +.+..++..+........+++++||++|
T Consensus 81 ~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 148 (198)
T cd04147 81 DDPESFEEVER-LREEILEVKEDKFVPIVVVGNKADSLEEE-----------RQVPAKDALSTVELDWNCGFVETSAKDN 148 (198)
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEcccccccc-----------ccccHHHHHHHHHhhcCCcEEEecCCCC
Confidence 99999998874 766665542 479999999999986531 2233334443333222267899999999
Q ss_pred ccHHHHHHHHHHHHc
Q psy10443 166 RGLRQVFDEAVRAVL 180 (195)
Q Consensus 166 ~~v~~~~~~l~~~~~ 180 (195)
.|++++|+++.+.+.
T Consensus 149 ~gv~~l~~~l~~~~~ 163 (198)
T cd04147 149 ENVLEVFKELLRQAN 163 (198)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999999765
No 104
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.98 E-value=2.9e-31 Score=181.44 Aligned_cols=157 Identities=20% Similarity=0.275 Sum_probs=121.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
||+++|.+|||||||+++|.+..+. .+.||.+..+. .... ..+.+.+||+||++.+...+..+++++|++++|+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~-~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE-TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE-EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 6899999999999999999998764 36667654432 2333 457788999999999998999999999999999999
Q ss_pred CChhcHHHHHHhhHHHHh-hh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC-----CceeEEe
Q psy10443 88 VSPSSFDNVTSKWYPELK-HH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR-----AVKYMEC 160 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~-~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 160 (195)
++++++.++.. |+..+. .. ..+.|+++++||+|+... +..+++..+....+ .+.++++
T Consensus 77 s~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (169)
T cd04158 77 SHRDRVSEAHS-ELAKLLTEKELRDALLLIFANKQDVAGA--------------LSVEEMTELLSLHKLCCGRSWYIQGC 141 (169)
T ss_pred CcHHHHHHHHH-HHHHHhcChhhCCCCEEEEEeCcCcccC--------------CCHHHHHHHhCCccccCCCcEEEEeC
Confidence 99999998875 544443 32 356899999999998643 33444544443211 2468899
Q ss_pred ccCCcccHHHHHHHHHHHHcCCC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
||++|.|++++|++|.+.+....
T Consensus 142 Sa~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 142 DARSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred cCCCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999998876543
No 105
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=2.2e-30 Score=177.09 Aligned_cols=165 Identities=26% Similarity=0.496 Sum_probs=134.9
Q ss_pred CCC-CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeec-cceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCc
Q psy10443 1 MSS-GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT 78 (195)
Q Consensus 1 m~~-~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~ 78 (195)
|-. ...++|+++|++|+|||||++++..+.+...+.++.... ....+.+++..+.+.+||+||++.+...+..++..+
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 443 456899999999999999999999887766666665433 344567788889999999999999998888999999
Q ss_pred cEEEEEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCcee
Q psy10443 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKY 157 (195)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
|++++|+|+++++++..+. .|+..+.... .++|+++++||+|+... +.+..+....+.+... .++
T Consensus 81 d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~i~v~NK~D~~~~------------~~i~~~~~~~~~~~~~-~~~ 146 (169)
T cd04114 81 NALILTYDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDLAER------------REVSQQRAEEFSDAQD-MYY 146 (169)
T ss_pred CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------cccCHHHHHHHHHHcC-CeE
Confidence 9999999999999998776 4887776654 46999999999998654 2244555666666666 789
Q ss_pred EEeccCCcccHHHHHHHHHHHH
Q psy10443 158 MECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
+++||++|.|++++|++|.+.+
T Consensus 147 ~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 147 LETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998764
No 106
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=3.3e-31 Score=183.25 Aligned_cols=164 Identities=18% Similarity=0.300 Sum_probs=123.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEe-CCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTV-DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.+||+++|.+|||||||++++..+.+... .||.+... ...+.. ++..+.+.+||+||++.+..++..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998877543 45554332 222222 446688999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH--Hc---CCc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN--KI---RAV 155 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~ 155 (195)
+|+|+++++++..... |+..+... ..+.|+++++||+|+... ...++...+.. .. ..+
T Consensus 81 ~v~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd04152 81 FVVDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPNA--------------LSVSEVEKLLALHELSASTPW 145 (183)
T ss_pred EEEECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCcccc--------------CCHHHHHHHhCccccCCCCce
Confidence 9999999988887764 55554432 247999999999998643 22233333322 11 124
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
+++++||++|.|+++++++|.+.+.+.++
T Consensus 146 ~~~~~SA~~~~gi~~l~~~l~~~l~~~~~ 174 (183)
T cd04152 146 HVQPACAIIGEGLQEGLEKLYEMILKRRK 174 (183)
T ss_pred EEEEeecccCCCHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999998875554
No 107
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=1.2e-31 Score=182.29 Aligned_cols=157 Identities=17% Similarity=0.218 Sum_probs=122.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
.|+++|++|||||||+++|.+..+...+.||.+... ..+++..+.+.+||+||++.+..++..+++++|++++|||+
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 379999999999999999999888777888875432 23455568889999999999999999999999999999999
Q ss_pred CChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC---
Q psy10443 88 VSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT--- 164 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--- 164 (195)
+++.++..... |+..+....+++|+++|+||+|+.......... ...++..++++.+ +.++++||++
T Consensus 78 t~~~s~~~~~~-~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~--------~~~~~~~~~~~~~-~~~~~~Sa~~~~s 147 (164)
T cd04162 78 ADSERLPLARQ-ELHQLLQHPPDLPLVVLANKQDLPAARSVQEIH--------KELELEPIARGRR-WILQGTSLDDDGS 147 (164)
T ss_pred CCHHHHHHHHH-HHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHH--------HHhCChhhcCCCc-eEEEEeeecCCCC
Confidence 99998888774 655555444789999999999986543211100 0112344555555 7789998888
Q ss_pred ---cccHHHHHHHHHH
Q psy10443 165 ---QRGLRQVFDEAVR 177 (195)
Q Consensus 165 ---~~~v~~~~~~l~~ 177 (195)
++|++++|+.++.
T Consensus 148 ~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 148 PSRMEAVKDLLSQLIN 163 (164)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999998764
No 108
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=3.5e-31 Score=179.20 Aligned_cols=153 Identities=19% Similarity=0.246 Sum_probs=115.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+||+++|.+|||||||++++..+.+. .+.||.+.... .+.. ..+.+.+||+||++++..++..+++++|++|+|+|
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 58999999999999999999887775 46677654432 2333 35778899999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH-HHHHHH---HcCCceeEEec
Q psy10443 87 VVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ-GQKLAN---KIRAVKYMECS 161 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~S 161 (195)
++++.++..+...|...+.. ...+.|+++++||+|+.... ..++ ...+.. ....+.++++|
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~~~~S 142 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--------------SAAEVTDKLGLHSLRNRNWYIQATC 142 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--------------CHHHHHHHhCccccCCCCEEEEEee
Confidence 99999998887645444443 23568999999999986431 1111 111211 01124678999
Q ss_pred cCCcccHHHHHHHHHH
Q psy10443 162 ALTQRGLRQVFDEAVR 177 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~ 177 (195)
|++|+|++++|++|.+
T Consensus 143 ak~g~gv~~~~~~l~~ 158 (159)
T cd04150 143 ATSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCCHHHHHHHHhc
Confidence 9999999999999864
No 109
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=1.7e-30 Score=175.49 Aligned_cols=157 Identities=34% Similarity=0.627 Sum_probs=133.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|.+|||||||++++.+..+...+.+|....+ ...+..++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999888776666665544 345666777789999999999999989999999999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
|+++++++..+.. |+..+.... ++.|+++++||+|+..+ .....++...++...+ .+++++|+++
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~~ 146 (159)
T cd00154 81 DITNRESFENLDK-WLKELKEYAPENIPIILVGNKIDLEDQ------------RQVSTEEAQQFAKENG-LLFFETSAKT 146 (159)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCCCCCcEEEEEEccccccc------------ccccHHHHHHHHHHcC-CeEEEEecCC
Confidence 9999999988885 888887765 68999999999999733 2255677888888766 7899999999
Q ss_pred cccHHHHHHHHHH
Q psy10443 165 QRGLRQVFDEAVR 177 (195)
Q Consensus 165 ~~~v~~~~~~l~~ 177 (195)
+.|+++++++|.+
T Consensus 147 ~~~i~~~~~~i~~ 159 (159)
T cd00154 147 GENVEELFQSLAE 159 (159)
T ss_pred CCCHHHHHHHHhC
Confidence 9999999999863
No 110
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=6.6e-30 Score=181.09 Aligned_cols=165 Identities=29% Similarity=0.512 Sum_probs=137.3
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
.+...+||+++|++|||||||++++..+.+...+.+|.+..+. ..+..++..+.+.+||++|++.+..++..++.++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 4567899999999999999999999888888888888766553 344557788999999999999999888899999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
+++|+|+++..++..+. .|+..+.....++|+++++||+|+.... ... +...+....+ +.++++
T Consensus 85 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-------------~~~-~~~~~~~~~~-~~~~e~ 148 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVP-NWHRDIVRVCENIPIVLVGNKVDVKDRQ-------------VKA-RQITFHRKKN-LQYYDI 148 (215)
T ss_pred EEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccCcccc-------------CCH-HHHHHHHHcC-CEEEEE
Confidence 99999999999999887 4888887666789999999999985431 222 2234556655 689999
Q ss_pred ccCCcccHHHHHHHHHHHHcCC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
|+++|.|+++.|.+|++.+...
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999987643
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=3.8e-30 Score=176.58 Aligned_cols=155 Identities=21% Similarity=0.289 Sum_probs=118.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
++.++|+++|++|||||||+++|.+..+ ..+.+|.+.. .....++ .+.+.+||+||++.++.++..+++++|++++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ-IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 5678999999999999999999998754 3455555422 2234444 4678899999999998888999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHH-hh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH----cCCcee
Q psy10443 84 CYSVVSPSSFDNVTSKWYPEL-KH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK----IRAVKY 157 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~-~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 157 (195)
|+|++++.++..... |+..+ .. ...+.|+++|+||+|+.+.. ..+++..+... ...+++
T Consensus 88 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 152 (173)
T cd04154 88 VVDSSDRLRLDDCKR-ELKELLQEERLAGATLLILANKQDLPGAL--------------SEEEIREALELDKISSHHWRI 152 (173)
T ss_pred EEECCCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcccccCC--------------CHHHHHHHhCccccCCCceEE
Confidence 999999999888764 44443 22 23689999999999986541 22333333321 123689
Q ss_pred EEeccCCcccHHHHHHHHHH
Q psy10443 158 MECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~ 177 (195)
+++||++|.|++++|+++.+
T Consensus 153 ~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 153 QPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EeccCCCCcCHHHHHHHHhc
Confidence 99999999999999999864
No 112
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.97 E-value=1.9e-29 Score=173.18 Aligned_cols=156 Identities=21% Similarity=0.318 Sum_probs=117.9
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
..+.++|+++|.+|+|||||+++++.+.+.. +.+|.+..+ .....+ .+.+.+||+||++.+...+..+++++|+++
T Consensus 12 ~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 87 (174)
T cd04153 12 PRKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV-EEIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVI 87 (174)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce-EEEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 3467999999999999999999999887754 456655443 233344 467789999999999888999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHH-HHHH----HHcCCce
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQG-QKLA----NKIRAVK 156 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~ 156 (195)
+|+|+++++++......+...+... ..++|+++++||+|+.... ..++. ..+. +... ++
T Consensus 88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~--------------~~~~i~~~l~~~~~~~~~-~~ 152 (174)
T cd04153 88 LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM--------------TPAEISESLGLTSIRDHT-WH 152 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC--------------CHHHHHHHhCcccccCCc-eE
Confidence 9999999998887765444444432 3579999999999986531 11221 1111 1222 57
Q ss_pred eEEeccCCcccHHHHHHHHHH
Q psy10443 157 YMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
++++||++|.|++++|++|.+
T Consensus 153 ~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 153 IQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EEecccCCCCCHHHHHHHHhc
Confidence 899999999999999999875
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.97 E-value=1.1e-29 Score=172.40 Aligned_cols=152 Identities=23% Similarity=0.250 Sum_probs=112.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC-CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEe
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS-FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYS 86 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d 86 (195)
+|+++|++|||||||+++|.+.. +...+.||.+.... .+ ....+.+.+||+||++++..++..+++++|++|+|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SF--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EE--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 58999999999999999999875 34556666653322 22 2345778899999999999999999999999999999
Q ss_pred CCChhcHHHHHHhhHHHHhhh----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH---H-HcCCceeE
Q psy10443 87 VVSPSSFDNVTSKWYPELKHH----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA---N-KIRAVKYM 158 (195)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~~~----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~ 158 (195)
++++.++..... |+..+... ..++|+++++||+|+..... .++..... . ....++++
T Consensus 78 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--------------~~~~~~~l~~~~~~~~~~~~~ 142 (162)
T cd04157 78 SSDRLRLVVVKD-ELELLLNHPDIKHRRVPILFFANKMDLPDALT--------------AVKITQLLGLENIKDKPWHIF 142 (162)
T ss_pred CCcHHHHHHHHH-HHHHHHcCcccccCCCCEEEEEeCccccCCCC--------------HHHHHHHhCCccccCceEEEE
Confidence 999988877664 55444332 24799999999999865421 11111111 0 11124689
Q ss_pred EeccCCcccHHHHHHHHHH
Q psy10443 159 ECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~ 177 (195)
++||++|.|++++|++|.+
T Consensus 143 ~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 143 ASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EeeCCCCCchHHHHHHHhc
Confidence 9999999999999999864
No 114
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=1e-28 Score=169.34 Aligned_cols=159 Identities=23% Similarity=0.372 Sum_probs=123.2
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
..+.++|+++|.+||||||+++++..+.+. ...||.+... ..+.+++ +.+.+||++|+..++..|..++.++|++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCccccccc-ceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 368899999999999999999999976543 3556655443 2344555 55679999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH-----HcCCce
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN-----KIRAVK 156 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 156 (195)
||+|+++++.+.+....+...+... ..++|++|++||+|+..... .+++..... ....+.
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~--------------~~~i~~~l~l~~l~~~~~~~ 152 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMS--------------EEEIKEYLGLEKLKNKRPWS 152 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSST--------------HHHHHHHTTGGGTTSSSCEE
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcch--------------hhHHHhhhhhhhcccCCceE
Confidence 9999999999988876555555542 45899999999999876532 222222111 112367
Q ss_pred eEEeccCCcccHHHHHHHHHHHH
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
++.+||.+|+|+.+.++||.+.+
T Consensus 153 v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 153 VFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHhcC
Confidence 89999999999999999998864
No 115
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1.2e-28 Score=171.68 Aligned_cols=158 Identities=20% Similarity=0.328 Sum_probs=122.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEe-----CCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTV-----DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-----~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
+||+++|++|||||||+++|.++.+...+.+|.+..+. ....+ ++..+.+++||++|++.|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999998888888865443 23344 3577999999999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhh--------------------CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCc
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHH--------------------CPDAPIILVGTKIDLREDRETLNLLSEQNLSPV 140 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~ 140 (195)
+|+|||+++++|++.+. .|+..+... ..++|+++|+||+|+.+.. .+
T Consensus 81 iIlVyDvtn~~Sf~~l~-~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r------------~~ 147 (202)
T cd04102 81 IILVHDLTNRKSSQNLQ-RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK------------ES 147 (202)
T ss_pred EEEEEECcChHHHHHHH-HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc------------cc
Confidence 99999999999999997 598887542 2468999999999997642 12
Q ss_pred cHH----HHHHHHHHcCCceeEEeccCCc----------ccHHHHHHHHHHH
Q psy10443 141 KRE----QGQKLANKIRAVKYMECSALTQ----------RGLRQVFDEAVRA 178 (195)
Q Consensus 141 ~~~----~~~~~~~~~~~~~~~~~Sa~~~----------~~v~~~~~~l~~~ 178 (195)
..+ ....++..++ .+.++.++.+. ..+..+|+.+++.
T Consensus 148 ~~~~~~~~~~~ia~~~~-~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (202)
T cd04102 148 SGNLVLTARGFVAEQGN-AEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEK 198 (202)
T ss_pred chHHHhhHhhhHHHhcC-CceEEEecCCcccccCCCccHHHHHHHHHHHHHh
Confidence 222 2445566777 56666665532 3355666666554
No 116
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=9.5e-30 Score=173.53 Aligned_cols=157 Identities=17% Similarity=0.271 Sum_probs=117.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
+|+++|.+|||||||++++.+. +...+.||.+.. ...+..+ .+.+++||+||++.+..++..+++++|++|+|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999976 666777777554 2233443 46778999999999999999999999999999999
Q ss_pred CChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC-CceeEEeccCC
Q psy10443 88 VSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR-AVKYMECSALT 164 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~ 164 (195)
+++.++..+.. |+..+... ..++|+++++||+|+............. ....++.+.+ .+.++++||++
T Consensus 77 s~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~--------~l~~~~~~~~~~~~~~~~Sa~~ 147 (167)
T cd04161 77 SDDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYL--------SLEKLVNENKSLCHIEPCSAIE 147 (167)
T ss_pred CchhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhc--------CcccccCCCCceEEEEEeEcee
Confidence 99999988875 65555433 3579999999999997653222211111 1122232222 25788899999
Q ss_pred c------ccHHHHHHHHHH
Q psy10443 165 Q------RGLRQVFDEAVR 177 (195)
Q Consensus 165 ~------~~v~~~~~~l~~ 177 (195)
| .|+++.|+||..
T Consensus 148 g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 148 GLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCccccCHHHHHHHHhc
Confidence 8 899999999864
No 117
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=4.2e-29 Score=169.00 Aligned_cols=151 Identities=19% Similarity=0.257 Sum_probs=112.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
||+++|++++|||||++++..+.+. .+.+|.+.... .... ..+.+++||+||++.+..++..++..+|++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE-TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 6899999999999999999887664 34555543332 2223 346788999999999999999999999999999999
Q ss_pred CChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH-HHH----HHcCCceeEEec
Q psy10443 88 VSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ-KLA----NKIRAVKYMECS 161 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~S 161 (195)
+++.++......|...+... ..+.|+++++||+|+..... ..+.. .+. ...+ .+++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~--------------~~~i~~~~~~~~~~~~~-~~~~~~S 141 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS--------------EAEISEKLGLSELKDRT-WSIFKTS 141 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC--------------HHHHHHHhCccccCCCc-EEEEEee
Confidence 99888776655454444432 35799999999999865421 11111 111 1111 4699999
Q ss_pred cCCcccHHHHHHHHHH
Q psy10443 162 ALTQRGLRQVFDEAVR 177 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~ 177 (195)
|++|.|++++|++|++
T Consensus 142 a~~~~gi~~l~~~l~~ 157 (158)
T cd04151 142 AIKGEGLDEGMDWLVN 157 (158)
T ss_pred ccCCCCHHHHHHHHhc
Confidence 9999999999999875
No 118
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=1.3e-28 Score=171.39 Aligned_cols=158 Identities=23% Similarity=0.408 Sum_probs=119.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+..||+++|++|||||||++++.++.+. .+.+|.... ...+.+++ +.+.+||+||++.+...+..+++++|++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~-~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT-SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 56899999999999999999999987763 455565433 34455555 566799999999988888889999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH-----------
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK----------- 151 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 151 (195)
|+|+++.+++......+...+... ..+.|+++++||+|+... +..++.+.+...
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 158 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA--------------VSEEELRQALGLYGTTTGKGVSL 158 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC--------------cCHHHHHHHhCcccccccccccc
Confidence 999999988887765344444322 357999999999998643 233344433321
Q ss_pred ----cCCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 152 ----IRAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 152 ----~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
...+++++|||++|+|++++|.+|.+.+
T Consensus 159 ~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 159 KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred cccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 1225689999999999999999998753
No 119
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.96 E-value=1.8e-28 Score=167.32 Aligned_cols=153 Identities=23% Similarity=0.331 Sum_probs=111.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC------CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF------PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
||+++|++|+|||||++++.+... ...+.+|....+ ..+.++ .+.+.+||+||++.+..++..+++.+|++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 689999999999999999986422 223334443333 234444 45677999999999998888999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH------cCC
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK------IRA 154 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 154 (195)
++|+|+++++++......+...+... ..++|+++++||+|+... ...++...+... ...
T Consensus 78 v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd04160 78 IYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--------------LSVEEIKEVFQDKAEEIGRRD 143 (167)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--------------CCHHHHHHHhccccccccCCc
Confidence 99999999888887765333333322 357999999999998654 222233333222 123
Q ss_pred ceeEEeccCCcccHHHHHHHHHH
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
++++++||++|.|+++++++|.+
T Consensus 144 ~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 144 CLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred eEEEEeeCCCCcCHHHHHHHHhc
Confidence 68999999999999999999865
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=1.6e-28 Score=166.40 Aligned_cols=152 Identities=22% Similarity=0.316 Sum_probs=112.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
+|+++|++|||||||+++|.++.+.. ..||.+..+. .... +..+.+.+||+||++.+...+..++..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 58999999999999999999987754 3455543322 2222 3457888999999999988888899999999999999
Q ss_pred CChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH------HHHHHcCCceeEEe
Q psy10443 88 VSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ------KLANKIRAVKYMEC 160 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 160 (195)
+++.++......+...+... ..+.|+++++||+|+.... ..+++. .++... .++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~-~~~~~~~ 142 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--------------TAEEITRRFKLKKYCSDR-DWYVQPC 142 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--------------CHHHHHHHcCCcccCCCC-cEEEEec
Confidence 99988888765343443332 3589999999999985431 111111 111112 2578999
Q ss_pred ccCCcccHHHHHHHHHH
Q psy10443 161 SALTQRGLRQVFDEAVR 177 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~ 177 (195)
||++|+|++++|++|.+
T Consensus 143 Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 143 SAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ccccCCChHHHHHHHhc
Confidence 99999999999999864
No 121
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=4.8e-28 Score=167.54 Aligned_cols=168 Identities=17% Similarity=0.269 Sum_probs=117.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.++|+++|.+|||||||++++.++.+. .+.||.... .....+++ +.+.+||+||++.+...+..++.++|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPT-SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 57899999999999999999999987664 334444332 22333444 567799999999999899999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+|+++++++......+...+.. ...+.|+++++||+|+.......+.............. -....+...++++||
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~---~~~~~~~~~i~~~Sa 167 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSK---GKVGVRPLEVFMCSV 167 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccc---cccCCceeEEEEeec
Confidence 99999999888876534343332 23579999999999986432222111111111000000 000123367999999
Q ss_pred CCcccHHHHHHHHHHH
Q psy10443 163 LTQRGLRQVFDEAVRA 178 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~ 178 (195)
++|.|++++++||.+.
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999764
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.96 E-value=3.2e-28 Score=164.62 Aligned_cols=152 Identities=20% Similarity=0.267 Sum_probs=114.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
||+++|.+|||||||++++++..+ ..+.+|..... ....++ .+.+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999998874 34445544332 223333 46777999999999999999999999999999999
Q ss_pred CChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH----HcCCceeEEecc
Q psy10443 88 VSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN----KIRAVKYMECSA 162 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa 162 (195)
++++++......+....... ..+.|+++++||+|+..... .++...... ....++++++||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALS--------------VSELIEKLGLEKILGRRWHIQPCSA 142 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccC--------------HHHHHHhhChhhccCCcEEEEEeeC
Confidence 99999988875344443432 35899999999999876421 122222221 112368999999
Q ss_pred CCcccHHHHHHHHHH
Q psy10443 163 LTQRGLRQVFDEAVR 177 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~ 177 (195)
++|.|++++|++|.+
T Consensus 143 ~~~~gv~~~~~~l~~ 157 (158)
T cd00878 143 VTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCCHHHHHHHHhh
Confidence 999999999999875
No 123
>PLN00023 GTP-binding protein; Provisional
Probab=99.96 E-value=9.8e-28 Score=174.82 Aligned_cols=146 Identities=21% Similarity=0.289 Sum_probs=117.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeC-------------CEEEEEEEEeCCCCccccc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVD-------------GIPVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~~~D~~G~~~~~~ 69 (195)
...+||+++|+.|||||||+++|.++.+...+.+|.+..+ ...+.++ +..+.+++||++|++.|..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 4579999999999999999999999998888888886654 3344443 3568899999999999999
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhC-------------CCCcEEEEeeCCCcccchHhhhhhhhcC
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHC-------------PDAPIILVGTKIDLREDRETLNLLSEQN 136 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~vvv~nK~D~~~~~~~~~~~~~~~ 136 (195)
++..++++++++|+|||+++.++++.+. .|+..+.... .++|++||+||+|+........
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~-kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~------ 171 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQ-KWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRG------ 171 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccc------
Confidence 9999999999999999999999999997 4988887642 2589999999999965321000
Q ss_pred CCCccHHHHHHHHHHcCCce
Q psy10443 137 LSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~ 156 (195)
...+..+++++|+.+.+.++
T Consensus 172 ~s~~~~e~a~~~A~~~g~l~ 191 (334)
T PLN00023 172 SSGNLVDAARQWVEKQGLLP 191 (334)
T ss_pred cccccHHHHHHHHHHcCCCc
Confidence 00135688999999987544
No 124
>KOG0073|consensus
Probab=99.96 E-value=1.1e-27 Score=154.75 Aligned_cols=164 Identities=17% Similarity=0.258 Sum_probs=125.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
+++++|+++|..|+||||++++|.+.. ++...||.+.... +..+ ..+++++||.+||...+..|..|+..+|++|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ik-tl~~--~~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIK-TLEY--KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeE-EEEe--cceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 568999999999999999999999765 3445555554432 3333 44677799999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhh-hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccH-HHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKH-HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR-EQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~S 161 (195)
|+|.+|+..+++....+-..+.. ...+.|+++++||.|+..+...+. +.. -+...+++... ++++.||
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~---------i~~~~~L~~l~ks~~-~~l~~cs 159 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEE---------ISKALDLEELAKSHH-WRLVKCS 159 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHH---------HHHhhCHHHhccccC-ceEEEEe
Confidence 99999999998877645444443 346789999999999985532221 111 12333444444 7899999
Q ss_pred cCCcccHHHHHHHHHHHHcC
Q psy10443 162 ALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~ 181 (195)
+.+|+++.+-+.|+...+.+
T Consensus 160 ~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 160 AVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred ccccccHHHHHHHHHHHHHH
Confidence 99999999999999987765
No 125
>KOG0070|consensus
Probab=99.95 E-value=4.7e-28 Score=160.28 Aligned_cols=167 Identities=18% Similarity=0.257 Sum_probs=130.7
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
...++.+|+++|..++||||++.+|..+++... .||.+.+.+ .+.+. ++++.+||.+||++++..|.+|+.+.+++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE-~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE-TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee-EEEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 356889999999999999999999998877443 888877755 33343 67888999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEe
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMEC 160 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (195)
|||+|.+|++.+.++.+.+...+.... .+.|+++.+||.|+...-...+....+. ...+.. ..+.+..+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~--------l~~l~~--~~w~iq~~ 158 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLG--------LHSLRS--RNWHIQST 158 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhh--------hhccCC--CCcEEeec
Confidence 999999999999998876766666553 6899999999999987643222111111 111111 22567889
Q ss_pred ccCCcccHHHHHHHHHHHHcCC
Q psy10443 161 SALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+|.+|+|+.+.++|+.+.+...
T Consensus 159 ~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 159 CAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccccccHHHHHHHHHHHHhcc
Confidence 9999999999999999887653
No 126
>KOG4252|consensus
Probab=99.95 E-value=1.2e-29 Score=166.28 Aligned_cols=163 Identities=28% Similarity=0.473 Sum_probs=147.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.-+|++++|+.++||||++++++.+.|...|..|.+..+. ....+++..+++.+||++|+++|......|++++.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 35689999999999999999999999999999989876653 44566777788899999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|++.+|..||+...+ |...+......+|.++|-||+|+.++. .+..++++.+++.+. ..++.+|+
T Consensus 98 LVFSTTDr~SFea~~~-w~~kv~~e~~~IPtV~vqNKIDlveds------------~~~~~evE~lak~l~-~RlyRtSv 163 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLE-WYNKVQKETERIPTVFVQNKIDLVEDS------------QMDKGEVEGLAKKLH-KRLYRTSV 163 (246)
T ss_pred EEEecccHHHHHHHHH-HHHHHHHHhccCCeEEeeccchhhHhh------------hcchHHHHHHHHHhh-hhhhhhhh
Confidence 9999999999999985 999999988999999999999999874 477888999999888 68999999
Q ss_pred CCcccHHHHHHHHHHHHc
Q psy10443 163 LTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~ 180 (195)
+...|+..+|..|++.+.
T Consensus 164 ked~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 164 KEDFNVMHVFAYLAEKLT 181 (246)
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 999999999999998765
No 127
>KOG0075|consensus
Probab=99.95 E-value=9.9e-29 Score=156.73 Aligned_cols=163 Identities=19% Similarity=0.288 Sum_probs=137.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
.++.+.++|..++|||||++....+.+.+...||.+.+.. .+..-.+.+.+||.|||++|+++|..|++.++++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 4678999999999999999999999888888888877755 3455567778999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
+|+++++.++...+.+...+.+. ..++|+++++||.|+..+...+...+...+..+.+.+ +.+|.+|++
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdRE----------vcC~siSck 165 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDRE----------VCCFSISCK 165 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccce----------EEEEEEEEc
Confidence 99999999988877677776654 3689999999999999887766666665555554443 678999999
Q ss_pred CcccHHHHHHHHHHHHc
Q psy10443 164 TQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~ 180 (195)
+..|++.+..||++...
T Consensus 166 e~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 166 EKVNIDITLDWLIEHSK 182 (186)
T ss_pred CCccHHHHHHHHHHHhh
Confidence 99999999999988643
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.95 E-value=3e-27 Score=163.02 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=110.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC-------CCCCccccee------ecc---ceeEEe---CCEEEEEEEEeCCCCcccc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS-------FPGEYVPTVF------DNY---SAPFTV---DGIPVSLGLWDTAGQEDYD 68 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~-------~~~~~~~t~~------~~~---~~~~~~---~~~~~~l~~~D~~G~~~~~ 68 (195)
+|+++|++++|||||+++|++.. +...+.++.. ..+ .....+ ++..+.+.+||+||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998731 1122222211 111 111222 5667889999999999998
Q ss_pred ccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHH
Q psy10443 69 RLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKL 148 (195)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (195)
..+..+++.+|++|+|+|+++..+.+... .|..... .++|+++++||+|+.... ..+...++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~--------------~~~~~~~~ 143 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLA-NFYLALE---NNLEIIPVINKIDLPSAD--------------PERVKQQI 143 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHH-HHHHHHH---cCCCEEEEEECCCCCcCC--------------HHHHHHHH
Confidence 88888999999999999999876665554 2433332 378999999999985431 11222344
Q ss_pred HHHcCC--ceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 149 ANKIRA--VKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 149 ~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
++.++. ..++++||++|.|++++|++|.+.+..
T Consensus 144 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 144 EDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred HHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 444442 248999999999999999999987643
No 129
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.95 E-value=4.1e-27 Score=158.98 Aligned_cols=157 Identities=20% Similarity=0.304 Sum_probs=115.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
.|+++|++|+|||||++++.+..+...+.+|.+.... ....++ +.+.+||+||++.+...+..++..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 3899999999999999999999888888887765543 233333 6788999999999999899999999999999999
Q ss_pred CChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcc
Q psy10443 88 VSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQR 166 (195)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (195)
++..++......+...+... ..++|+++++||+|+............... ..... ..++++++|+++|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~Sa~~~~ 147 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNL---------KSITD-REVSCYSISCKEKT 147 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCc---------ccccC-CceEEEEEEeccCC
Confidence 99888877664333333322 357899999999998654211100000000 00011 22578999999999
Q ss_pred cHHHHHHHHHH
Q psy10443 167 GLRQVFDEAVR 177 (195)
Q Consensus 167 ~v~~~~~~l~~ 177 (195)
|+++++++|.+
T Consensus 148 gi~~l~~~l~~ 158 (159)
T cd04159 148 NIDIVLDWLIK 158 (159)
T ss_pred ChHHHHHHHhh
Confidence 99999999875
No 130
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=2.5e-26 Score=157.37 Aligned_cols=142 Identities=30% Similarity=0.492 Sum_probs=120.5
Q ss_pred CCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh
Q psy10443 29 DSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH 107 (195)
Q Consensus 29 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 107 (195)
+.|.+++.||.+..+ ...+.+++..+.+.|||+||++++..++..+++++|++|+|||++++++++.+. .|+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~-~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHH-HHHHHHHHh
Confidence 456778888987555 456788899999999999999999999999999999999999999999999987 488776554
Q ss_pred -CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 108 -CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 108 -~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
.+++|+++|+||+|+... +.+..+++..++..++ +.++++||++|.|++++|.+|.+.+.+...
T Consensus 82 ~~~~~piilVgNK~DL~~~------------~~v~~~e~~~~~~~~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~ 146 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDL------------RKVTYEEGMQKAQEYN-TMFHETSAKAGHNIKVLFKKIAAKLPNLDN 146 (176)
T ss_pred cCCCCeEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 467999999999999653 3366777888888887 579999999999999999999999876443
No 131
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=5.6e-26 Score=155.14 Aligned_cols=154 Identities=19% Similarity=0.219 Sum_probs=103.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCC-cccceeeccceeEEeCCEEEEEEEEeCCCCccccccCC---------CCCCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGE-YVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRP---------LSYPQ 77 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~---------~~~~~ 77 (195)
+|+++|.+|+|||||+++|++..+... +..++.......... ..+.+.+|||||+........ .....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 799999999999999999999766322 222221111111222 346778999999743211000 01123
Q ss_pred ccEEEEEEeCCChhcH--HHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 78 TDVFLICYSVVSPSSF--DNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
+|++++|+|++++.++ .... .|+..+.....+.|+++++||+|+..... .. +...+... +..
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~-~~~~~l~~~~~~~pvilv~NK~Dl~~~~~------------~~--~~~~~~~~-~~~ 143 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQL-SLFEEIKPLFKNKPVIVVLNKIDLLTFED------------LS--EIEEEEEL-EGE 143 (168)
T ss_pred cCcEEEEEeCCcccccchHHHH-HHHHHHHhhcCcCCeEEEEEccccCchhh------------HH--HHHHhhhh-ccC
Confidence 6899999999987653 3433 47777766556899999999999976432 11 13333333 347
Q ss_pred eeEEeccCCcccHHHHHHHHHHHH
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
+++++||++|.|++++++++.+.+
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 144 EVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ceEEEEecccCCHHHHHHHHHHHh
Confidence 899999999999999999999876
No 132
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.94 E-value=3.8e-26 Score=162.41 Aligned_cols=180 Identities=34% Similarity=0.467 Sum_probs=139.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccce-eEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+..+||+++|++|||||||+++|.++.+...+.+|....+.. .....+..+.+.+||++|+++++.++..++.++++++
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 345999999999999999999999999998899887666543 3344444888999999999999999999999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhC-CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc--CCceeEE
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHC-PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI--RAVKYME 159 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 159 (195)
+++|.++..+..+....|...+.... .+.|+++++||+|+...............+.............. ....+++
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE 162 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence 99999997777777777999988876 47999999999999887654433322211112222222222211 2234899
Q ss_pred eccC--CcccHHHHHHHHHHHHcCCC
Q psy10443 160 CSAL--TQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 160 ~Sa~--~~~~v~~~~~~l~~~~~~~~ 183 (195)
+|++ ++.++.++|..+.+.+....
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHHHhh
Confidence 9999 99999999999999886543
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=4e-26 Score=156.58 Aligned_cols=160 Identities=20% Similarity=0.324 Sum_probs=112.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.++|+++|++|||||||++++.+..+. .+.++.+... ..+..++ ..+.+||+||+..+...+..+++++|++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 46799999999999999999999987653 3444444222 2334454 456699999999888888888999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+|+++..++......+...+... ..++|+++++||+|+................. + ....++++++||
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~--------~--~~~~~~~~~~Sa 157 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHD--------L--RDRTWHIQACSA 157 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcc--------c--CCCeEEEEEeEC
Confidence 999999888877664344444332 34799999999999865421111100000000 0 001135789999
Q ss_pred CCcccHHHHHHHHHH
Q psy10443 163 LTQRGLRQVFDEAVR 177 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~ 177 (195)
++|+|++++|++|.+
T Consensus 158 ~~~~gi~~~~~~l~~ 172 (173)
T cd04155 158 KTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999999875
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=1.2e-25 Score=151.68 Aligned_cols=157 Identities=34% Similarity=0.498 Sum_probs=121.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
++||+++|.+|+|||||++++....+...+.++...... ..+..++..+.+.+||+||+..+...+..+++.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 479999999999999999999998876666666655443 3456777778888999999999988888888999999999
Q ss_pred EeCCCh-hcHHHHHHhhHHHHhhhCC-CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 85 YSVVSP-SSFDNVTSKWYPELKHHCP-DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 85 ~d~~~~-~s~~~~~~~~~~~~~~~~~-~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|+... .++......|...+..... +.|+++++||+|+.... . ...........+..+++++||
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~~~~~~~~sa 146 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-------------L-KTHVAFLFAKLNGEPIIPLSA 146 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-------------h-hHHHHHHHhhccCCceEEeec
Confidence 999877 6666555345555555444 89999999999997642 1 123333344445567999999
Q ss_pred CCcccHHHHHHHHH
Q psy10443 163 LTQRGLRQVFDEAV 176 (195)
Q Consensus 163 ~~~~~v~~~~~~l~ 176 (195)
+++.|+++++.+|.
T Consensus 147 ~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 147 ETGKNIDSAFKIVE 160 (161)
T ss_pred CCCCCHHHHHHHhh
Confidence 99999999999864
No 135
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=6e-26 Score=155.27 Aligned_cols=156 Identities=21% Similarity=0.195 Sum_probs=107.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCcc----ccccCCCC---CCCcc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED----YDRLRPLS---YPQTD 79 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~----~~~~~~~~---~~~~d 79 (195)
+|+++|.+|||||||+++|.+.... ..+..++.........+++. ..+.+||+||... ...+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999975431 12222322222223333332 4677999999642 12222233 34699
Q ss_pred EEEEEEeCCCh-hcHHHHHHhhHHHHhhhC---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 80 VFLICYSVVSP-SSFDNVTSKWYPELKHHC---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
++++|+|++++ ++++... .|.+.+.... .+.|+++|+||+|+..... ..+....+.......
T Consensus 81 ~vi~v~D~~~~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~ 146 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYK-TIRNELELYNPELLEKPRIVVLNKIDLLDEEE-------------LFELLKELLKELWGK 146 (170)
T ss_pred EEEEEEecCCCCCHHHHHH-HHHHHHHHhCccccccccEEEEEchhcCCchh-------------hHHHHHHHHhhCCCC
Confidence 99999999998 6777776 4777766543 3689999999999866532 123344444543336
Q ss_pred eeEEeccCCcccHHHHHHHHHHH
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
+++++||+++.|++++|+++.+.
T Consensus 147 ~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 147 PVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CEEEEecCCCCCHHHHHHHHHhh
Confidence 79999999999999999999875
No 136
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.94 E-value=1.5e-26 Score=153.75 Aligned_cols=135 Identities=25% Similarity=0.301 Sum_probs=99.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCc-----cccccCCCCCCCccEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE-----DYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~-----~~~~~~~~~~~~~d~~i 82 (195)
||+++|++|||||||+++|.+..+. +.+|.. ..+.. .+||+||+. .+..+.. .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~------~~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA------VEYND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee------EEEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999987542 233321 12222 589999972 3333333 478999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
+|+|++++.++... .|.... ..|+++++||+|+.+.. ...++..++++..+..+++++||
T Consensus 68 lv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~~Sa 127 (142)
T TIGR02528 68 LVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEAD-------------VDIERAKELLETAGAEPIFEISS 127 (142)
T ss_pred EEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCcc-------------cCHHHHHHHHHHcCCCcEEEEec
Confidence 99999999887552 254432 24999999999986421 33455677777776558999999
Q ss_pred CCcccHHHHHHHHH
Q psy10443 163 LTQRGLRQVFDEAV 176 (195)
Q Consensus 163 ~~~~~v~~~~~~l~ 176 (195)
++|.|++++|+++.
T Consensus 128 ~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 128 VDEQGLEALVDYLN 141 (142)
T ss_pred CCCCCHHHHHHHHh
Confidence 99999999999874
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.94 E-value=9.4e-26 Score=153.32 Aligned_cols=157 Identities=18% Similarity=0.106 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC---CCCCcccc-eeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS---FPGEYVPT-VFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~t-~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.|+++|.+|||||||+++|++.. +..++.++ +.........+.+ ...+.+||+||++++......+++++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999999642 22222222 2111122333431 356779999999988766667788999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc--CCceeEEe
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI--RAVKYMEC 160 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 160 (195)
+|+|+++....+... .+..+... ...|+++++||+|+....... ...++..++.... ...+++++
T Consensus 80 ~V~d~~~~~~~~~~~--~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 146 (164)
T cd04171 80 LVVAADEGIMPQTRE--HLEILELL-GIKRGLVVLTKADLVDEDWLE----------LVEEEIRELLAGTFLADAPIFPV 146 (164)
T ss_pred EEEECCCCccHhHHH--HHHHHHHh-CCCcEEEEEECccccCHHHHH----------HHHHHHHHHHHhcCcCCCcEEEE
Confidence 999998732111111 11222221 124999999999997542100 1122333333332 33689999
Q ss_pred ccCCcccHHHHHHHHHH
Q psy10443 161 SALTQRGLRQVFDEAVR 177 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~ 177 (195)
||+++.|+++++..+.+
T Consensus 147 Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 147 SAVTGEGIEELKEYLDE 163 (164)
T ss_pred eCCCCcCHHHHHHHHhh
Confidence 99999999999998764
No 138
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=4.3e-25 Score=165.40 Aligned_cols=161 Identities=18% Similarity=0.241 Sum_probs=111.4
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCcc-ccccCC-----
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED-YDRLRP----- 72 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~-~~~~~~----- 72 (195)
|++.+.++|+++|.+|||||||+++|++..+. .....|+.......+..++.+ +.||||||... +..+..
T Consensus 47 ~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~q--i~~~DTpG~~~~~~~l~~~~~r~ 124 (339)
T PRK15494 47 MSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQ--VILYDTPGIFEPKGSLEKAMVRC 124 (339)
T ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeE--EEEEECCCcCCCcccHHHHHHHH
Confidence 45567789999999999999999999987653 122334444444555666654 56999999743 222211
Q ss_pred --CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 73 --LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 73 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
.++.++|++++|+|.++ ++......|+..+... +.|.++|+||+|+.... ..+..++..
T Consensus 125 ~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~---------------~~~~~~~l~ 185 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESKY---------------LNDIKAFLT 185 (339)
T ss_pred HHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcccc---------------HHHHHHHHH
Confidence 24679999999999765 3444433455655543 56778899999985421 223444444
Q ss_pred Hc-CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 151 KI-RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 151 ~~-~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.. ....++++||++|.|+++++++|.+.+.+.
T Consensus 186 ~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 186 ENHPDSLLFPISALSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred hcCCCcEEEEEeccCccCHHHHHHHHHHhCCCC
Confidence 33 235799999999999999999999987654
No 139
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=5.8e-25 Score=163.71 Aligned_cols=162 Identities=19% Similarity=0.186 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc----ccC---CCCCCCc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD----RLR---PLSYPQT 78 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~----~~~---~~~~~~~ 78 (195)
..|+++|.||||||||++++++... ...|+.|+.......+.+.+ ...+.+||+||..+-. .+. ...++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 3789999999999999999997542 24555566554444455522 2346699999964211 122 2245679
Q ss_pred cEEEEEEeCCChhcHHHHHHhhHHHHhhhC---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHC---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
+++++|+|+++.++++... .|...+..+. .+.|+++|+||+|+..... ...+....+....+ .
T Consensus 238 ~vlI~ViD~s~~~s~e~~~-~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~------------~~~~~~~~~~~~~~-~ 303 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYK-TIRNELEKYSPELADKPRILVLNKIDLLDEEE------------EREKRAALELAALG-G 303 (335)
T ss_pred CEEEEEEcCCCCCCHHHHH-HHHHHHHHhhhhcccCCeEEEEECcccCCchh------------HHHHHHHHHHHhcC-C
Confidence 9999999999888887776 4877777653 3689999999999875432 22223444444454 6
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+++++||++++|+++++++|.+.+.+.+
T Consensus 304 ~i~~iSAktg~GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 304 PVFLISAVTGEGLDELLRALWELLEEAR 331 (335)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhhh
Confidence 7999999999999999999999876543
No 140
>KOG0071|consensus
Probab=99.93 E-value=2.5e-25 Score=140.24 Aligned_cols=163 Identities=18% Similarity=0.254 Sum_probs=127.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.++++|+.+|..++||||++..|.-+.. ....||++.+.. . +.-+++++++||++|++..+.+|++|+....++||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnve-t--VtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE-T--VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEE-E--EEeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 5789999999999999999999997654 456677766654 2 33356788899999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+|..+.+..+++.+.+...+.+. ..+.|++|.+||.|+..+..+.+..+-.++. . ++ ...+.+.++++
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe--------~-~r-~~~W~vqp~~a 160 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELE--------R-IR-DRNWYVQPSCA 160 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccc--------c-cc-CCccEeecccc
Confidence 999999999999887777777653 5689999999999998874333321111111 1 11 12256788999
Q ss_pred CCcccHHHHHHHHHHHHc
Q psy10443 163 LTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~ 180 (195)
.+|+|+.+-|.||...+.
T Consensus 161 ~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred ccchhHHHHHHHHHhhcc
Confidence 999999999999987654
No 141
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=7.6e-25 Score=171.03 Aligned_cols=160 Identities=18% Similarity=0.217 Sum_probs=114.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcc----------ccccC-
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED----------YDRLR- 71 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~----------~~~~~- 71 (195)
..++|+++|.+|||||||+++|++... .....+|+.+.....+.+++..+. +|||||..+ +..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~--l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWR--FVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEE--EEECCCccccccccchHHHHHHHHH
Confidence 468999999999999999999998753 345556666666666777777664 999999532 22221
Q ss_pred CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 72 PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
..+++.+|++++|+|++++.+.++.. ++..+.. .+.|+++|+||+|+....... ...++.......
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~--~~~~~~~--~~~piIiV~NK~Dl~~~~~~~----------~~~~~i~~~l~~ 353 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR--VLSMVIE--AGRALVLAFNKWDLVDEDRRY----------YLEREIDRELAQ 353 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH--HHHHHHH--cCCCEEEEEECcccCChhHHH----------HHHHHHHHhccc
Confidence 23578999999999999988887764 4444443 378999999999997532110 111122221122
Q ss_pred cCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 152 IRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 152 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
....+++++||++|.|++++|+.+.+.+.
T Consensus 354 ~~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 354 VPWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 23367899999999999999999988764
No 142
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.93 E-value=2e-24 Score=157.73 Aligned_cols=155 Identities=15% Similarity=0.076 Sum_probs=109.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc--------cCCCCCCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR--------LRPLSYPQ 77 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~--------~~~~~~~~ 77 (195)
+|+++|.+|||||||+|+|++..+. .....|+..........++ ..+.||||||...... ....++.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999997643 3444455544433333333 3567999999654321 12345789
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCcee
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKY 157 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
+|++++|+|+++..+.. ..++..+... +.|+++|+||+|+..... ..+....+....+..++
T Consensus 80 aDvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~~v 141 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKDK-------------LLPLIDKYAILEDFKDI 141 (270)
T ss_pred CCEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHHH-------------HHHHHHHHHhhcCCCce
Confidence 99999999999876654 2344555443 789999999999964321 12233444444443478
Q ss_pred EEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+++||++|.|++++++++.+.+.+.
T Consensus 142 ~~iSA~~g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 142 VPISALTGDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred EEEecCCCCCHHHHHHHHHHhCCCC
Confidence 9999999999999999999987543
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=2.9e-24 Score=146.57 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=106.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeC-CEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVD-GIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
.|+++|.+|+|||||+++|....+...+.++..... ......+ +..+.+.+||+||++.+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999998876544333222222 1222222 13567779999999998888888899999999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH----H-cCCceeEEe
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN----K-IRAVKYMEC 160 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~ 160 (195)
|+++....+... .+..+.. .++|+++++||+|+....... . ......+.. . ...++++++
T Consensus 82 d~~~~~~~~~~~--~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
T cd01887 82 AADDGVMPQTIE--AIKLAKA--ANVPFIVALNKIDKPNANPER----------V-KNELSELGLQGEDEWGGDVQIVPT 146 (168)
T ss_pred ECCCCccHHHHH--HHHHHHH--cCCCEEEEEEceecccccHHH----------H-HHHHHHhhccccccccCcCcEEEe
Confidence 998854332221 2223333 378999999999986432100 0 011111110 0 122579999
Q ss_pred ccCCcccHHHHHHHHHHHH
Q psy10443 161 SALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 161 Sa~~~~~v~~~~~~l~~~~ 179 (195)
|+++|+|+++++++|.+..
T Consensus 147 Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 147 SAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred ecccCCCHHHHHHHHHHhh
Confidence 9999999999999998764
No 144
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=2.8e-25 Score=147.12 Aligned_cols=147 Identities=20% Similarity=0.286 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc------ccCCCC--CCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD------RLRPLS--YPQ 77 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~------~~~~~~--~~~ 77 (195)
++|+++|.||||||||+|+|++... ..+++.++.+.....+.+.+..+. ++|+||--... .....+ ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~--lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVE--LVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEE--EEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEE--EEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999753 356677777666777778886555 99999942221 112223 257
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCcee
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKY 157 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
.|++++|+|+++.+.-.. +...+.+. ++|+++++||+|...... . .-+...+.+.++ +|+
T Consensus 79 ~D~ii~VvDa~~l~r~l~----l~~ql~e~--g~P~vvvlN~~D~a~~~g------------~-~id~~~Ls~~Lg-~pv 138 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLY----LTLQLLEL--GIPVVVVLNKMDEAERKG------------I-EIDAEKLSERLG-VPV 138 (156)
T ss_dssp SSEEEEEEEGGGHHHHHH----HHHHHHHT--TSSEEEEEETHHHHHHTT------------E-EE-HHHHHHHHT-S-E
T ss_pred CCEEEEECCCCCHHHHHH----HHHHHHHc--CCCEEEEEeCHHHHHHcC------------C-EECHHHHHHHhC-CCE
Confidence 999999999987543322 33444444 799999999999987532 2 224667777888 799
Q ss_pred EEeccCCcccHHHHHHHH
Q psy10443 158 MECSALTQRGLRQVFDEA 175 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l 175 (195)
+++||++++|++++++.|
T Consensus 139 i~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 139 IPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EEEBTTTTBTHHHHHHHH
T ss_pred EEEEeCCCcCHHHHHhhC
Confidence 999999999999999875
No 145
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.92 E-value=3.3e-24 Score=150.86 Aligned_cols=154 Identities=21% Similarity=0.196 Sum_probs=105.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCC-CcccceeeccceeEEeCCEEEEEEEEeCCCCccc---------cccCCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPG-EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY---------DRLRPLS 74 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~---------~~~~~~~ 74 (195)
..++|+++|++|||||||++++++..+.. ....++.......+.+++. ..+.+||+||.... ...+ ..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 35799999999999999999999876422 2222222222233344443 25679999997321 1111 12
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
+.++|++++|+|++++.+..... .|...+... ..+.|+++|+||+|+...... ..+.....
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~-~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----------------~~~~~~~~ 179 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIE-TVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----------------EERLEAGR 179 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHH-HHHHHHHHcCcCCCCEEEEEEccccCChHHH-----------------HHHhhcCC
Confidence 56899999999999988777654 365666543 246899999999999765321 02233333
Q ss_pred CceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
.+++++||+++.|+++++++|.+.+
T Consensus 180 -~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 180 -PDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred -CceEEEEcCCCCCHHHHHHHHHhhC
Confidence 6799999999999999999988753
No 146
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=5.5e-24 Score=143.78 Aligned_cols=147 Identities=18% Similarity=0.223 Sum_probs=105.2
Q ss_pred EEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc------CCCCC--CCccEE
Q psy10443 11 VVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL------RPLSY--PQTDVF 81 (195)
Q Consensus 11 v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~------~~~~~--~~~d~~ 81 (195)
++|.+|+|||||++++++..+. ..+..++.......+.+++. .+.+|||||+..+... +..++ .++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGK--EIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCe--EEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 5899999999999999987533 33343444444455666664 5679999998876643 34445 489999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
++|+|+++++.... |...+... ++|+++++||+|+..... .. .+...+...++ .+++++|
T Consensus 79 i~v~d~~~~~~~~~----~~~~~~~~--~~~~iiv~NK~Dl~~~~~------------~~-~~~~~~~~~~~-~~~~~iS 138 (158)
T cd01879 79 VNVVDATNLERNLY----LTLQLLEL--GLPVVVALNMIDEAEKRG------------IK-IDLDKLSELLG-VPVVPTS 138 (158)
T ss_pred EEEeeCCcchhHHH----HHHHHHHc--CCCEEEEEehhhhccccc------------ch-hhHHHHHHhhC-CCeEEEE
Confidence 99999988654332 33333332 789999999999965421 21 22345666666 6899999
Q ss_pred cCCcccHHHHHHHHHHHH
Q psy10443 162 ALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~ 179 (195)
++++.|++++++++.+.+
T Consensus 139 a~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 139 ARKGEGIDELKDAIAELA 156 (158)
T ss_pred ccCCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 147
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=8.8e-25 Score=153.42 Aligned_cols=158 Identities=17% Similarity=0.151 Sum_probs=102.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCC-----------CccccccCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG-----------QEDYDRLRP 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G-----------~~~~~~~~~ 72 (195)
.+.++|+++|.+|||||||+++|++..+...+.+++... ...+..+ .+.+||+|| ++.++..+.
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 356899999999999999999999877654444433221 1222222 467999999 455555444
Q ss_pred CCC----CCccEEEEEEeCCChhcHHH---------HHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCC
Q psy10443 73 LSY----PQTDVFLICYSVVSPSSFDN---------VTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSP 139 (195)
Q Consensus 73 ~~~----~~~d~~i~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~ 139 (195)
.++ ..++++++|+|.++...... ....+...+.. .++|+++|+||+|+....
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~------------- 146 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR------------- 146 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-------------
Confidence 444 34678888888765322110 00112233332 379999999999986542
Q ss_pred ccHHHHHHHHHHcCC--------ceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 140 VKREQGQKLANKIRA--------VKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 140 ~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
.+...++...++. .+++++||++| |+++++++|.+.+.+.++
T Consensus 147 --~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 147 --DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred --HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 1223344444442 25899999999 999999999998765443
No 148
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=6.9e-24 Score=141.90 Aligned_cols=154 Identities=41% Similarity=0.612 Sum_probs=116.0
Q ss_pred EEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCC
Q psy10443 11 VVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVS 89 (195)
Q Consensus 11 v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 89 (195)
++|++|+|||||++++.+... .....++.................+.+||+||+..+...+..+++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998776 4555555533344555556667888999999998888877888999999999999999
Q ss_pred hhcHHHHHHhh-HHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccH
Q psy10443 90 PSSFDNVTSKW-YPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGL 168 (195)
Q Consensus 90 ~~s~~~~~~~~-~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 168 (195)
+.+.......+ .........+.|+++++||+|+..... ................+++++|++++.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~------------~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 148 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERV------------VSEEELAEQLAKELGVPYFETSAKTGENV 148 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccc------------hHHHHHHHHHHhhcCCcEEEEecCCCCCh
Confidence 98888776421 233333456899999999999876532 11111122333444588999999999999
Q ss_pred HHHHHHHH
Q psy10443 169 RQVFDEAV 176 (195)
Q Consensus 169 ~~~~~~l~ 176 (195)
++++++|.
T Consensus 149 ~~~~~~l~ 156 (157)
T cd00882 149 EELFEELA 156 (157)
T ss_pred HHHHHHHh
Confidence 99999975
No 149
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.92 E-value=1e-23 Score=163.72 Aligned_cols=161 Identities=20% Similarity=0.250 Sum_probs=112.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccC-----------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLR----------- 71 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~----------- 71 (195)
..++|+++|.+|+|||||+++|++.. ......+|+.+.....+..++.. +.+|||||..++....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKK--YLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcE--EEEEECCCccccccchhhHHHHHHHHH
Confidence 45899999999999999999999864 23455566666555556666664 5599999976654332
Q ss_pred CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 72 PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
..+++.+|++++|+|++++.+.++.. +...+... +.|+++|+||+|+........ ....+.......
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~~~--~~~iiiv~NK~Dl~~~~~~~~---------~~~~~~~~~~~~ 315 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR--IAGLILEA--GKALVIVVNKWDLVKDEKTRE---------EFKKELRRKLPF 315 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH--HHHHHHHc--CCcEEEEEECcccCCCHHHHH---------HHHHHHHHhccc
Confidence 23578899999999999887766653 44444433 789999999999973211000 001112112222
Q ss_pred cCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 152 IRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 152 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.+.++++++||++|.|++++|+++.+...
T Consensus 316 ~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 316 LDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 34478999999999999999999888654
No 150
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.92 E-value=1.3e-24 Score=140.20 Aligned_cols=114 Identities=31% Similarity=0.520 Sum_probs=87.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCC--Ccccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPG--EYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~--~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
||+|+|++|||||||+++|.+..+.. .+.++..... .....+......+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999987651 1122222222 22345566666689999999999888877789999999999
Q ss_pred EeCCChhcHHHHHHh--hHHHHhhhCCCCcEEEEeeCCC
Q psy10443 85 YSVVSPSSFDNVTSK--WYPELKHHCPDAPIILVGTKID 121 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~--~~~~~~~~~~~~p~vvv~nK~D 121 (195)
||++++++++.+.+. |+..+....+++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999999987542 6777776677899999999998
No 151
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=5.2e-24 Score=143.70 Aligned_cols=146 Identities=21% Similarity=0.203 Sum_probs=103.2
Q ss_pred EEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc--------cCCCCCCCcc
Q psy10443 10 VVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR--------LRPLSYPQTD 79 (195)
Q Consensus 10 ~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~--------~~~~~~~~~d 79 (195)
+++|.+|+|||||+++|++.. +.....+++..........++ ..+.+||+||...+.. .+...++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999864 334445555444444455555 4566999999887543 2334678899
Q ss_pred EEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE
Q psy10443 80 VFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159 (195)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (195)
++++|+|+.++.+..... +...+... +.|+++++||+|+..... . .......+..++++
T Consensus 79 ~ii~v~d~~~~~~~~~~~--~~~~~~~~--~~piiiv~nK~D~~~~~~------------~-----~~~~~~~~~~~~~~ 137 (157)
T cd01894 79 VILFVVDGREGLTPADEE--IAKYLRKS--KKPVILVVNKVDNIKEED------------E-----AAEFYSLGFGEPIP 137 (157)
T ss_pred EEEEEEeccccCCccHHH--HHHHHHhc--CCCEEEEEECcccCChHH------------H-----HHHHHhcCCCCeEE
Confidence 999999998765444321 33444433 599999999999976532 1 11223344336899
Q ss_pred eccCCcccHHHHHHHHHHH
Q psy10443 160 CSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~ 178 (195)
+|++++.|++++++++.+.
T Consensus 138 ~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 138 ISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred EecccCCCHHHHHHHHHhh
Confidence 9999999999999999875
No 152
>KOG3883|consensus
Probab=99.92 E-value=3.6e-23 Score=132.48 Aligned_cols=169 Identities=29% Similarity=0.403 Sum_probs=139.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEe-CCEEEEEEEEeCCCCccc-cccCCCCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTV-DGIPVSLGLWDTAGQEDY-DRLRPLSYPQTD 79 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~-~~~~~~~~~~~d 79 (195)
.+--||+|+|..++|||+|+.++.-+. ...++.||.++.+...+.. ++..=.+.++||+|-..+ ..+-.+|+.-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 467899999999999999999987764 3467778888887665554 344446779999997666 667788999999
Q ss_pred EEEEEEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCcee
Q psy10443 80 VFLICYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKY 157 (195)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
++++||+..|++||+.+.. +...+.+. -..+|+++++||+|+.++ +.+..+.++.|++.-. +..
T Consensus 87 afVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p------------~~vd~d~A~~Wa~rEk-vkl 152 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEP------------REVDMDVAQIWAKREK-VKL 152 (198)
T ss_pred eEEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccc------------hhcCHHHHHHHHhhhh-eeE
Confidence 9999999999999998763 55555553 246999999999999877 4588888999999888 789
Q ss_pred EEeccCCcccHHHHHHHHHHHHcCCCccc
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLRPEPVK 186 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~ 186 (195)
+++++.++..+-+.|..+...+.+++.+.
T Consensus 153 ~eVta~dR~sL~epf~~l~~rl~~pqskS 181 (198)
T KOG3883|consen 153 WEVTAMDRPSLYEPFTYLASRLHQPQSKS 181 (198)
T ss_pred EEEEeccchhhhhHHHHHHHhccCCcccc
Confidence 99999999999999999999998887654
No 153
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=5e-24 Score=148.75 Aligned_cols=148 Identities=14% Similarity=0.034 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhc--CCCCCCcc------------cceeecc-ceeEEeCCEEEEEEEEeCCCCccccccC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT--DSFPGEYV------------PTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLR 71 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~--~~~~~~~~------------~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~ 71 (195)
-+|+++|.+++|||||+++|++ +.+...+. .+.+..+ .....++...+.+.+||+||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 44443321 1111111 1222334445778899999999999888
Q ss_pred CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 72 PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
..+++++|++++|+|+++... .... .++..+.. .++|+++++||+|+...... ...++...+...
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~~-~~~~-~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~-----------~~~~~~~~~~~~ 147 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGPM-PQTR-FVLKKALE--LGLKPIVVINKIDRPDARPE-----------EVVDEVFDLFIE 147 (194)
T ss_pred HHHHHhcCEEEEEEECCCCcc-HHHH-HHHHHHHH--cCCCEEEEEECCCCCCCCHH-----------HHHHHHHHHHHH
Confidence 999999999999999987422 2222 23333333 37899999999999653210 112333343322
Q ss_pred c------CCceeEEeccCCcccHH
Q psy10443 152 I------RAVKYMECSALTQRGLR 169 (195)
Q Consensus 152 ~------~~~~~~~~Sa~~~~~v~ 169 (195)
+ ..++++++||++|.|+.
T Consensus 148 ~~~~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 148 LGATEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred hCCccccCccCEEEeehhcccccc
Confidence 2 12689999999997663
No 154
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.92 E-value=7.3e-24 Score=168.51 Aligned_cols=161 Identities=19% Similarity=0.195 Sum_probs=114.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC-------CCCCcccce------eeccc---eeEEe---CCEEEEEEEEeCCCCccc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS-------FPGEYVPTV------FDNYS---APFTV---DGIPVSLGLWDTAGQEDY 67 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~-------~~~~~~~t~------~~~~~---~~~~~---~~~~~~l~~~D~~G~~~~ 67 (195)
-||+++|+.++|||||+++|+... +...+..+. +..+. ..+.+ ++..+.++||||||+..|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 489999999999999999998642 112222211 11111 11222 466789999999999999
Q ss_pred cccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHH
Q psy10443 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQK 147 (195)
Q Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (195)
...+..+++.+|++|+|+|+++..+.+.... |..... .++|+++++||+|+..... .+...+
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~-~~~~~~---~~ipiIiViNKiDl~~~~~--------------~~~~~e 145 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLAN-VYLALE---NDLEIIPVINKIDLPSADP--------------ERVKKE 145 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHH-HHHHHH---cCCCEEEEEECcCCCccCH--------------HHHHHH
Confidence 9888889999999999999998776666543 544433 2789999999999864321 112233
Q ss_pred HHHHcCC--ceeEEeccCCcccHHHHHHHHHHHHcCCCcc
Q psy10443 148 LANKIRA--VKYMECSALTQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 148 ~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
+...++. ..++++||++|.|++++|++|.+.+..+...
T Consensus 146 l~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~ 185 (595)
T TIGR01393 146 IEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPKGD 185 (595)
T ss_pred HHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCCCC
Confidence 3343442 2489999999999999999999998776543
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=1.5e-23 Score=161.57 Aligned_cols=151 Identities=22% Similarity=0.275 Sum_probs=113.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc--------CCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL--------RPLS 74 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--------~~~~ 74 (195)
..++|+++|.+|||||||+++|++.. +..++++|+.+.....+.+++..+ .+|||||...+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v--~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILI--KLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEE--EEeeCCCcccchhHHHHHHHHHHHHH
Confidence 56899999999999999999999864 346677777776667777877655 59999998655432 2357
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
++++|++++|+|++++.+.+.. |+..+.. .+.|+++|+||+|+.... ...++..++
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~~------------------~~~~~~~~~- 335 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKINS------------------LEFFVSSKV- 335 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCcc------------------hhhhhhhcC-
Confidence 7899999999999998876653 4444432 378999999999985421 122344444
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.+++.+||++ .|++++|+.+.+.+.+.
T Consensus 336 ~~~~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 336 LNSSNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred CceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 5789999998 68889988888877543
No 156
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.91 E-value=5.2e-24 Score=148.41 Aligned_cols=163 Identities=18% Similarity=0.130 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC----CCCCCc----ccceeeccceeEEe------------CCEEEEEEEEeCCCCcc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD----SFPGEY----VPTVFDNYSAPFTV------------DGIPVSLGLWDTAGQED 66 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~----~~~~~~----~~t~~~~~~~~~~~------------~~~~~~l~~~D~~G~~~ 66 (195)
+||+++|++|+|||||+++|+.. .+...+ ..++.........+ ++..+.+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 111111 11221111112222 23467888999999876
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ 146 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (195)
+..........+|++++|+|+++....+... .+. .... .+.|+++++||+|+....... ...++..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~-~~~-~~~~--~~~~~iiv~NK~Dl~~~~~~~----------~~~~~~~ 146 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAE-CLV-IGEI--LCKKLIVVLNKIDLIPEEERE----------RKIEKMK 146 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHH-HHH-HHHH--cCCCEEEEEECcccCCHHHHH----------HHHHHHH
Confidence 5433334456789999999998754444332 122 1221 267999999999987432211 1112222
Q ss_pred H-HHHH-----cCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 147 K-LANK-----IRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 147 ~-~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+ +... ...++++++||++|.|+++++++|.+.++.+.
T Consensus 147 ~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 147 KKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccccc
Confidence 2 1111 23368999999999999999999999887653
No 157
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=1.7e-23 Score=155.82 Aligned_cols=157 Identities=22% Similarity=0.206 Sum_probs=110.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc----ccCCCC---CCCc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD----RLRPLS---YPQT 78 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~----~~~~~~---~~~~ 78 (195)
..|+++|.||||||||++++++... ..+|+.|+.......+.+++ ...+.+||+||..+.. .+...+ ++.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4799999999999999999998642 24455555444344445544 2456699999974322 222233 4479
Q ss_pred cEEEEEEeCCCh---hcHHHHHHhhHHHHhhhC---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc
Q psy10443 79 DVFLICYSVVSP---SSFDNVTSKWYPELKHHC---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI 152 (195)
Q Consensus 79 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (195)
+++++|+|+++. ++++... .|...+..+. .+.|+++|+||+|+..... ..+..+.+.+.+
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~-~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-------------~~~~~~~l~~~~ 302 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYE-IIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-------------LAELLKELKKAL 302 (329)
T ss_pred CEEEEEEcCccccccCHHHHHH-HHHHHHHHhhhhhccCCEEEEEeCccCCChHH-------------HHHHHHHHHHHc
Confidence 999999999976 5555554 3666665442 4789999999999976421 123344555555
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
+ .+++++||++++|+++++.+|.+.+
T Consensus 303 ~-~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 303 G-KPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred C-CcEEEEEccCCcCHHHHHHHHHHHh
Confidence 5 6899999999999999999998765
No 158
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.91 E-value=1e-23 Score=146.52 Aligned_cols=157 Identities=18% Similarity=0.108 Sum_probs=108.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCccccee-----------------eccceeEEeCCEEEEEEEEeCCCCcccccc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVF-----------------DNYSAPFTVDGIPVSLGLWDTAGQEDYDRL 70 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~-----------------~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~ 70 (195)
+|+++|.+|+|||||++.|.+.........+.. .......... ...+.+||+||+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 589999999999999999998765443322111 1111112222 456779999999888888
Q ss_pred CCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
+..+++.+|++++|+|++++.+..... ++..+.. .+.|+++++||+|+........ ..++..+..+
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~----------~~~~~~~~~~ 144 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTRE--HLRIARE--GGLPIIVAINKIDRVGEEDLEE----------VLREIKELLG 144 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHHH--HHHHHHH--CCCCeEEEEECCCCcchhcHHH----------HHHHHHHHHc
Confidence 888889999999999998866544332 3344433 4799999999999976321111 1122222222
Q ss_pred H-------------cCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 151 K-------------IRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 151 ~-------------~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
. ....+++++||++|.|+++++.++.+.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 145 LIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2 12478999999999999999999998874
No 159
>KOG0076|consensus
Probab=99.91 E-value=8.4e-25 Score=142.78 Aligned_cols=170 Identities=22% Similarity=0.318 Sum_probs=126.5
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCC------C-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCC
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDS------F-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPL 73 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~------~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~ 73 (195)
|.++..+.|+++|..++|||||+..+.... . +....+|.+.+. ..+.+. ...+.|||.+||+..+++|..
T Consensus 12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni-g~i~v~--~~~l~fwdlgGQe~lrSlw~~ 88 (197)
T KOG0076|consen 12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI-GTIEVC--NAPLSFWDLGGQESLRSLWKK 88 (197)
T ss_pred HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee-cceeec--cceeEEEEcCChHHHHHHHHH
Confidence 566788999999999999999998876421 1 122223333332 233344 456779999999999999999
Q ss_pred CCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHH---H
Q psy10443 74 SYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKL---A 149 (195)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 149 (195)
||..++++|+++|+++++.++.....+...+... ..++|+++.+||.|+...-+. .++... +
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~--------------~El~~~~~~~ 154 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEA--------------AELDGVFGLA 154 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhH--------------HHHHHHhhhh
Confidence 9999999999999999999998876565655544 468999999999998765322 222211 1
Q ss_pred HHc--CCceeEEeccCCcccHHHHHHHHHHHHcCCCcccc
Q psy10443 150 NKI--RAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVKR 187 (195)
Q Consensus 150 ~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~ 187 (195)
... ...++.++||.+|+|+++-.+|+.+.+.+...+..
T Consensus 155 e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn~~rp~ 194 (197)
T KOG0076|consen 155 ELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKNVTRPP 194 (197)
T ss_pred hhcCCccCccccchhhhcccHHHHHHHHHHHHhhccCCCc
Confidence 222 22578999999999999999999999988744333
No 160
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1.5e-23 Score=163.73 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=108.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCcc--------ccccCCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED--------YDRLRPLSY 75 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~--------~~~~~~~~~ 75 (195)
..+|+++|.+|||||||+++|++.... .....++.+.......+++.. +.+|||||.+. +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRR--FTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcE--EEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 368999999999999999999987532 333333444445555666655 55999999763 222344567
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
+.+|++|+|+|+++..+.... .|...++. .+.|+++|+||+|+.... .+....+...++
T Consensus 116 ~~aD~il~VvD~~~~~s~~~~--~i~~~l~~--~~~piilV~NK~Dl~~~~---------------~~~~~~~~~g~~-- 174 (472)
T PRK03003 116 RTADAVLFVVDATVGATATDE--AVARVLRR--SGKPVILAANKVDDERGE---------------ADAAALWSLGLG-- 174 (472)
T ss_pred HhCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCccc---------------hhhHHHHhcCCC--
Confidence 899999999999987665432 35555554 379999999999985421 111222333333
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
..+++||++|.|++++|+++.+.+.+
T Consensus 175 ~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 175 EPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 35799999999999999999998865
No 161
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=1.6e-22 Score=138.54 Aligned_cols=156 Identities=21% Similarity=0.303 Sum_probs=104.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc-----------C
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL-----------R 71 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~-----------~ 71 (195)
++++|+++|.+|+|||||++++++.... .....++..........++..+ .+||+||....... .
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~iiDtpG~~~~~~~~~~~e~~~~~~~ 78 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKY--TLIDTAGIRRKGKVEEGIEKYSVLRT 78 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeE--EEEECCCCccccchhccHHHHHHHHH
Confidence 3689999999999999999999986532 2333333333334455566554 59999997543211 1
Q ss_pred CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH-HHHHHH
Q psy10443 72 PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ-GQKLAN 150 (195)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 150 (195)
...++.+|++++|+|++++.+..... +...+.. .+.|+++++||+|+..... ...+. ...+.+
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~~~iiv~nK~Dl~~~~~------------~~~~~~~~~~~~ 142 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDLR--IAGLILE--EGKALVIVVNKWDLVEKDS------------KTMKEFKKEIRR 142 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHHH--HHHHHHh--cCCCEEEEEeccccCCccH------------HHHHHHHHHHHh
Confidence 12456899999999999887755432 3333332 2689999999999876521 01111 111222
Q ss_pred Hc---CCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 151 KI---RAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 151 ~~---~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
.+ +..+++++||+++.|++++++++.+.
T Consensus 143 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 143 KLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred hcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 22 23679999999999999999998764
No 162
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.91 E-value=3.5e-23 Score=140.80 Aligned_cols=156 Identities=21% Similarity=0.175 Sum_probs=103.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCC--CcccceeeccceeEEeCCEEEEEEEEeCCCCccccc--------cCCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPG--EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR--------LRPLS 74 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~--------~~~~~ 74 (195)
...+|+++|.+|+|||||++++.+..... ....++....... .....+.+.+||+||...... .....
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA 79 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence 46789999999999999999999865421 1112222211221 223345677999999754432 22335
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
+..+|++++|+|++++... ....+...+... +.|+++++||+|+..... ...+....+....+.
T Consensus 80 ~~~~d~i~~v~d~~~~~~~--~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~ 143 (168)
T cd04163 80 LKDVDLVLFVVDASEPIGE--GDEFILELLKKS--KTPVILVLNKIDLVKDKE------------DLLPLLEKLKELGPF 143 (168)
T ss_pred HHhCCEEEEEEECCCccCc--hHHHHHHHHHHh--CCCEEEEEEchhccccHH------------HHHHHHHHHHhccCC
Confidence 7789999999999987221 111233444433 689999999999974321 122334444455545
Q ss_pred ceeEEeccCCcccHHHHHHHHHHH
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
.+++++|++++.|++++++.|.+.
T Consensus 144 ~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 144 AEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred CceEEEEeccCCChHHHHHHHHhh
Confidence 689999999999999999999775
No 163
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.91 E-value=2.1e-23 Score=146.14 Aligned_cols=170 Identities=14% Similarity=0.174 Sum_probs=111.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCc-cEEEEEEe
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT-DVFLICYS 86 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~-d~~i~v~d 86 (195)
+|+++|++|||||||+++|..+.+...+.++............+..+.+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999987765554443222111111123456788999999999988888889998 99999999
Q ss_pred CCCh-hcHHHHHHhhHHHHhh---hCCCCcEEEEeeCCCcccchHhhhhhhhcC-------------CCCccHHH-----
Q psy10443 87 VVSP-SSFDNVTSKWYPELKH---HCPDAPIILVGTKIDLREDRETLNLLSEQN-------------LSPVKREQ----- 144 (195)
Q Consensus 87 ~~~~-~s~~~~~~~~~~~~~~---~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~-------------~~~~~~~~----- 144 (195)
+++. .++.....++...+.. ..+++|+++++||+|+............++ +......+
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 6777766544444432 236899999999999875433221111100 00000000
Q ss_pred -------HHHHHHHcCCceeEEeccCCcc-cHHHHHHHHHH
Q psy10443 145 -------GQKLANKIRAVKYMECSALTQR-GLRQVFDEAVR 177 (195)
Q Consensus 145 -------~~~~~~~~~~~~~~~~Sa~~~~-~v~~~~~~l~~ 177 (195)
...|...-..+.++++|++.+. |++.+.+||.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0112221123678899998876 69999998865
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=3.3e-23 Score=160.44 Aligned_cols=148 Identities=23% Similarity=0.310 Sum_probs=111.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc--------CCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL--------RPLS 74 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--------~~~~ 74 (195)
..++|+++|.+|+|||||+++|++... ..+..+++.+.....+.+++.. +.+|||||...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIP--LRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeE--EEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 458999999999999999999998653 4556666666656666777654 569999998754432 2346
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
+.++|++++|+|++++.+..+.. .|.. ..+.|+++|+||+|+..... .. ....
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~-~l~~-----~~~~piiiV~NK~DL~~~~~------------~~---------~~~~ 344 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDE-ILEE-----LKDKPVIVVLNKADLTGEID------------LE---------EENG 344 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHH-HHHh-----cCCCCcEEEEEhhhccccch------------hh---------hccC
Confidence 78899999999999988766543 2333 44789999999999965421 10 1222
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
.+++++||++|.|+++++++|.+.+..
T Consensus 345 ~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 345 KPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred CceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 578999999999999999999998754
No 165
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.90 E-value=1.4e-22 Score=160.49 Aligned_cols=154 Identities=19% Similarity=0.243 Sum_probs=107.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.++.+|+++|++++|||||+++|.+..+...+.+...... ...+.+++.. .+.|||||||+.|..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 3567999999999999999999998776544333222221 2233343321 5679999999999999988999999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH-------HHcC-C
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA-------NKIR-A 154 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~ 154 (195)
+|+|+++....+... .+ ..... .++|+++++||+|+..... ++..... ..++ .
T Consensus 164 LVVda~dgv~~qT~e-~i-~~~~~--~~vPiIVviNKiDl~~~~~---------------e~v~~~L~~~g~~~~~~~~~ 224 (587)
T TIGR00487 164 LVVAADDGVMPQTIE-AI-SHAKA--ANVPIIVAINKIDKPEANP---------------DRVKQELSEYGLVPEDWGGD 224 (587)
T ss_pred EEEECCCCCCHhHHH-HH-HHHHH--cCCCEEEEEECcccccCCH---------------HHHHHHHHHhhhhHHhcCCC
Confidence 999998754333322 12 22222 3799999999999864321 1111111 1222 2
Q ss_pred ceeEEeccCCcccHHHHHHHHHH
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
.+++++||++|+|++++++++..
T Consensus 225 ~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 225 TIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred ceEEEEECCCCCChHHHHHhhhh
Confidence 57999999999999999999865
No 166
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=3.2e-23 Score=155.62 Aligned_cols=150 Identities=20% Similarity=0.231 Sum_probs=105.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEe-CCEEEEEEEEeCCCCcc---------ccccCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTV-DGIPVSLGLWDTAGQED---------YDRLRPLS 74 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~l~~~D~~G~~~---------~~~~~~~~ 74 (195)
.++|+++|.+|+|||||+|+|++..+. .+...++.+.....+.+ ++. .+.+|||||..+ |...+ ..
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~--~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGG--EVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCc--eEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 489999999999999999999997542 33444554444555555 343 566999999721 22211 24
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
+.++|++++|+|++++.+...... |...+... ..+.|+++|+||+|+..... ...+.. .
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----------------v~~~~~--~ 325 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEA-VEKVLEELGAEDIPQLLVYNKIDLLDEPR-----------------IERLEE--G 325 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHH-HHHHHHHhccCCCCEEEEEEeecCCChHh-----------------HHHHHh--C
Confidence 678999999999999887766543 55555543 24789999999999865321 111111 1
Q ss_pred CceeEEeccCCcccHHHHHHHHHHH
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
..+++.+||++|.|+++++++|.+.
T Consensus 326 ~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 326 YPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CCCEEEEEccCCCCHHHHHHHHHhh
Confidence 1458999999999999999998764
No 167
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=6.5e-23 Score=140.92 Aligned_cols=152 Identities=23% Similarity=0.255 Sum_probs=101.3
Q ss_pred EEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeC-CEEEEEEEEeCCCCccc----cccC---CCCCCCccEE
Q psy10443 11 VVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVD-GIPVSLGLWDTAGQEDY----DRLR---PLSYPQTDVF 81 (195)
Q Consensus 11 v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~l~~~D~~G~~~~----~~~~---~~~~~~~d~~ 81 (195)
++|.+|||||||+++|.+... ...+..++.........++ + ..+.+||+||.... ..+. ...+.++|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 589999999999999998764 2334444433333334444 4 45669999996332 2222 2246789999
Q ss_pred EEEEeCCCh------hcHHHHHHhhHHHHhhhC--------CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHH
Q psy10443 82 LICYSVVSP------SSFDNVTSKWYPELKHHC--------PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQK 147 (195)
Q Consensus 82 i~v~d~~~~------~s~~~~~~~~~~~~~~~~--------~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (195)
++|+|++++ .++.+... |...+.... .+.|+++|+||+|+...... .......
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~------------~~~~~~~ 145 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEI-LNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEEL------------EEELVRE 145 (176)
T ss_pred EEEEeccCCccccccCHHHHHHH-HHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHH------------HHHHHHH
Confidence 999999988 45655543 544444321 37899999999999765321 1111122
Q ss_pred HHHHcCCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 148 LANKIRAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 148 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
+... ...+++++||+++.|++++++++.+.
T Consensus 146 ~~~~-~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 146 LALE-EGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HhcC-CCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 2222 33679999999999999999998764
No 168
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=1.8e-22 Score=136.05 Aligned_cols=145 Identities=24% Similarity=0.287 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc--------CCCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL--------RPLSYP 76 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--------~~~~~~ 76 (195)
++|+++|++|+|||||++++++... .....+++.......+..++ ..+.+||+||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 6899999999999999999998753 23333444333333444444 45679999997655422 224567
Q ss_pred CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 77 QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
.+|++++|+|++++.+...... +.. ..+.|+++++||+|+..... . ..... ..+
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~-~~~-----~~~~~vi~v~nK~D~~~~~~------------~-------~~~~~-~~~ 133 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEI-LEL-----PADKPIIVVLNKSDLLPDSE------------L-------LSLLA-GKP 133 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHH-HHh-----hcCCCEEEEEEchhcCCccc------------c-------ccccC-CCc
Confidence 8999999999998777665542 222 34789999999999976531 1 12222 368
Q ss_pred eEEeccCCcccHHHHHHHHHHHH
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
++++||+++.|+++++++|.+.+
T Consensus 134 ~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 134 IIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh
Confidence 99999999999999999988754
No 169
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.90 E-value=7.8e-23 Score=137.96 Aligned_cols=144 Identities=16% Similarity=0.105 Sum_probs=99.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccC----CCCCCCccEEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLR----PLSYPQTDVFLI 83 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~----~~~~~~~d~~i~ 83 (195)
+|+++|.+|+|||||++++.+.... ...+ ..+.+.+. .+||+||.......+ ...+.++|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKT------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--Cccc------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 7999999999999999998864311 1111 12222222 279999973222111 223679999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC-ceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA-VKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa 162 (195)
|+|+++.++.... |+..+ ..+.|+++++||+|+... ..+...++....+. .+++++||
T Consensus 71 v~d~~~~~s~~~~---~~~~~---~~~~~ii~v~nK~Dl~~~---------------~~~~~~~~~~~~~~~~p~~~~Sa 129 (158)
T PRK15467 71 VHGANDPESRLPA---GLLDI---GVSKRQIAVISKTDMPDA---------------DVAATRKLLLETGFEEPIFELNS 129 (158)
T ss_pred EEeCCCcccccCH---HHHhc---cCCCCeEEEEEccccCcc---------------cHHHHHHHHHHcCCCCCEEEEEC
Confidence 9999988765322 33322 236799999999998542 23445666666663 48999999
Q ss_pred CCcccHHHHHHHHHHHHcCCCc
Q psy10443 163 LTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
++|+|++++|+.+.+.+.+...
T Consensus 130 ~~g~gi~~l~~~l~~~~~~~~~ 151 (158)
T PRK15467 130 HDPQSVQQLVDYLASLTKQEEA 151 (158)
T ss_pred CCccCHHHHHHHHHHhchhhhc
Confidence 9999999999999888765443
No 170
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2.9e-22 Score=152.85 Aligned_cols=156 Identities=22% Similarity=0.216 Sum_probs=109.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccc----cccCCCC---CCCcc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY----DRLRPLS---YPQTD 79 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~----~~~~~~~---~~~~d 79 (195)
.|+++|.||||||||++++++... ..+++.|+.......+.+++ ...+.+||+||.... ..+...+ ++.++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 799999999999999999998653 13455555443333344431 245669999996432 1222333 45689
Q ss_pred EEEEEEeCCCh---hcHHHHHHhhHHHHhhhC---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 80 VFLICYSVVSP---SSFDNVTSKWYPELKHHC---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 80 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
++++|+|+++. +.+++.. .|...+..+. .+.|++||+||+|+... .+....+.+.++
T Consensus 239 llI~VID~s~~~~~dp~e~~~-~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----------------~e~l~~l~~~l~ 301 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYE-KINKELKLYNPRLLERPQIVVANKMDLPEA----------------EENLEEFKEKLG 301 (424)
T ss_pred EEEEEEeCCccccCChHHHHH-HHHHHHhhhchhccCCcEEEEEeCCCCcCC----------------HHHHHHHHHHhC
Confidence 99999999865 4555554 3666666543 37899999999997432 133455666666
Q ss_pred CceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.+++++||++++|+++++++|.+.+.+.
T Consensus 302 -~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 302 -PKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred -CcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 6899999999999999999999887543
No 171
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.89 E-value=1.7e-22 Score=160.87 Aligned_cols=165 Identities=19% Similarity=0.184 Sum_probs=114.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC--CCCC-----Ccccce------eecc---ceeEEe---CCEEEEEEEEeCCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD--SFPG-----EYVPTV------FDNY---SAPFTV---DGIPVSLGLWDTAGQ 64 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~-----~~~~t~------~~~~---~~~~~~---~~~~~~l~~~D~~G~ 64 (195)
++--|++++|+.++|||||+.+|+.. .+.. .+..+. +..+ ...+.+ ++..+.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 44559999999999999999999763 1111 110110 1111 111122 456788999999999
Q ss_pred ccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
.+|...+..+++.+|++|+|+|+++....+.... |..... .++|+++++||+|+..... ...
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~-~~~~~~---~~lpiIvViNKiDl~~a~~--------------~~v 146 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLALE---NDLEIIPVLNKIDLPAADP--------------ERV 146 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH---CCCCEEEEEECCCCCcccH--------------HHH
Confidence 9998888889999999999999998766555442 443332 3789999999999865321 111
Q ss_pred HHHHHHHcCC--ceeEEeccCCcccHHHHHHHHHHHHcCCCccc
Q psy10443 145 GQKLANKIRA--VKYMECSALTQRGLRQVFDEAVRAVLRPEPVK 186 (195)
Q Consensus 145 ~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~ 186 (195)
..++...++. ..++.+||++|.|+++++++|.+.+..+....
T Consensus 147 ~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~~ 190 (600)
T PRK05433 147 KQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPKGDP 190 (600)
T ss_pred HHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccccCCC
Confidence 2223333331 24899999999999999999999988775433
No 172
>PRK00089 era GTPase Era; Reviewed
Probab=99.89 E-value=2.9e-22 Score=148.21 Aligned_cols=162 Identities=20% Similarity=0.178 Sum_probs=110.1
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc--------ccCC
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD--------RLRP 72 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~--------~~~~ 72 (195)
+++.-.|+++|.+|||||||+|+|++..+. .....|+..........++ ..+.+|||||..... ....
T Consensus 2 ~~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~ 79 (292)
T PRK00089 2 GFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAW 79 (292)
T ss_pred CceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHH
Confidence 346678999999999999999999987643 2233344333333333333 567799999965432 1223
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI 152 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (195)
..+..+|++++|+|+++... .....+...+.. .+.|+++|+||+|+..... ........+....
T Consensus 80 ~~~~~~D~il~vvd~~~~~~--~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~------------~l~~~~~~l~~~~ 143 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIG--PGDEFILEKLKK--VKTPVILVLNKIDLVKDKE------------ELLPLLEELSELM 143 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCC--hhHHHHHHHHhh--cCCCEEEEEECCcCCCCHH------------HHHHHHHHHHhhC
Confidence 35678999999999988322 222223344442 3689999999999974321 1223445555555
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+..+++++||+++.|++++++++.+.+.+.
T Consensus 144 ~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 144 DFAEIVPISALKGDNVDELLDVIAKYLPEG 173 (292)
T ss_pred CCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence 667899999999999999999999987543
No 173
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.89 E-value=8.1e-22 Score=130.57 Aligned_cols=158 Identities=18% Similarity=0.206 Sum_probs=117.6
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcCCC--------CCCccc---ce-eeccceeEEeCCEEEEEEEEeCCCCccccc
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSF--------PGEYVP---TV-FDNYSAPFTVDGIPVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~~~--------~~~~~~---t~-~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~ 69 (195)
.+++..||+|+|+.++||||+++.+..... ...+.. |+ ...+ ....+++ ...+.++|+|||++|..
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~-g~~~~~~-~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDF-GSIELDE-DTGVHLFGTPGQERFKF 83 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecc-cceEEcC-cceEEEecCCCcHHHHH
Confidence 457889999999999999999999998643 111111 22 1111 2233333 23556999999999999
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA 149 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (195)
+|..+.+++.++|+++|.+.+..+ +.. ..+..+....+ +|++|.+||.|+.... ..+++++..
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a~-~ii~f~~~~~~-ip~vVa~NK~DL~~a~--------------ppe~i~e~l 146 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HAE-EIIDFLTSRNP-IPVVVAINKQDLFDAL--------------PPEKIREAL 146 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HHH-HHHHHHhhccC-CCEEEEeeccccCCCC--------------CHHHHHHHH
Confidence 999999999999999999999888 333 35566655533 9999999999998873 344444444
Q ss_pred HHc-CCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 150 NKI-RAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 150 ~~~-~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
... -.+++++.+|.++++..+.+..+...
T Consensus 147 ~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 147 KLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred HhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 433 23789999999999999999998876
No 174
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=1.5e-22 Score=164.93 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=114.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccc----------ccc-C
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY----------DRL-R 71 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~----------~~~-~ 71 (195)
...+|+++|.+|||||||+++|++... ..++.+|+.+.....+.+++..+. +|||||..+. ..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~--liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWL--FIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEE--EEECCCcccCcccchhHHHHHHHHH
Confidence 458999999999999999999998763 456677777766666777877655 9999995321 111 1
Q ss_pred CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 72 PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
..+++.+|++++|+|+++..+.++.. +...+... ++|+++|+||+|+........ ...+.......
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~--i~~~~~~~--~~piIiV~NK~DL~~~~~~~~----------~~~~~~~~l~~ 592 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK--VMSMAVDA--GRALVLVFNKWDLMDEFRRQR----------LERLWKTEFDR 592 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEEchhcCChhHHHH----------HHHHHHHhccC
Confidence 23468899999999999988877764 33444332 789999999999975421100 01111111112
Q ss_pred cCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 152 IRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 152 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
....+++.+||++|.|++++++.+.+.+.+
T Consensus 593 ~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 593 VTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 233567999999999999999999887764
No 175
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=4.1e-22 Score=154.94 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccc--------cccCCCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY--------DRLRPLSYP 76 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~--------~~~~~~~~~ 76 (195)
.+|+++|.+|||||||+++|.+... ...+.+++.+.......+++ ..+.+|||||++.. ......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999998753 34455555555555666666 56679999998762 222344678
Q ss_pred CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 77 QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
.+|++++|+|++++.+..+.. +...++.. +.|+++++||+|..... ....++ ..++.-.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~--~~~~l~~~--~~piilv~NK~D~~~~~----------------~~~~~~-~~lg~~~ 138 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEE--IAKILRKS--NKPVILVVNKVDGPDEE----------------ADAYEF-YSLGLGE 138 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCcEEEEEECccCccch----------------hhHHHH-HhcCCCC
Confidence 999999999998764443321 23334333 78999999999964421 112222 2344334
Q ss_pred eEEeccCCcccHHHHHHHHHHHH
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
++++||++|.|++++++.+.+..
T Consensus 139 ~~~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 139 PYPISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred CEEEEeeCCCCHHHHHHHHHhhC
Confidence 89999999999999999998843
No 176
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=4.2e-22 Score=154.89 Aligned_cols=160 Identities=19% Similarity=0.264 Sum_probs=110.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccC-----------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLR----------- 71 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~----------- 71 (195)
..++|+++|.+|+|||||+++|++.. ......+++.+.....+..++..+. +|||||........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~--lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYT--LIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEE--EEECCCCCCCcchhhHHHHHHHHHH
Confidence 46999999999999999999999754 2344555665555555556666554 99999965432221
Q ss_pred CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 72 PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
..+++.+|++|+|+|++++.+.++.. +...+... +.|+++++||+|+........ ..++.......
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~~~--~~~~ivv~NK~Dl~~~~~~~~----------~~~~~~~~l~~ 315 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR--IAGLALEA--GRALVIVVNKWDLVDEKTMEE----------FKKELRRRLPF 315 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHHHc--CCcEEEEEECccCCCHHHHHH----------HHHHHHHhccc
Confidence 23567899999999999887766553 44444433 689999999999974321111 11122222223
Q ss_pred cCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 152 IRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 152 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.+..+++++||++|.|++++++.+.+...
T Consensus 316 ~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 316 LDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred ccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 34478999999999999999999877543
No 177
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.89 E-value=3.1e-22 Score=139.98 Aligned_cols=161 Identities=16% Similarity=0.107 Sum_probs=102.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCc----------cccccCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE----------DYDRLRPL 73 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~----------~~~~~~~~ 73 (195)
....+|+++|.+|+|||||++++++..+...+.++.+....... ......+.+||+||.. .+..+...
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINF--FEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEE--EecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 34589999999999999999999987644444444322211111 1112567899999953 22222233
Q ss_pred CCC---CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 74 SYP---QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 74 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
+++ ..+++++|+|++++....+. .+...+.. .+.|+++++||+|+....... ...+++..+..
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~----------~~~~~i~~~l~ 165 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE--YGIPVLIVLTKADKLKKGERK----------KQLKKVRKALK 165 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH--cCCcEEEEEECcccCCHHHHH----------HHHHHHHHHHH
Confidence 333 34688899998876544332 12233332 268999999999987653211 11122333433
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
... .+++++||+++.|++++++.|.+.+.+
T Consensus 166 ~~~-~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 166 FGD-DEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred hcC-CceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 333 678999999999999999999877643
No 178
>COG1159 Era GTPase [General function prediction only]
Probab=99.89 E-value=3.8e-22 Score=142.16 Aligned_cols=165 Identities=16% Similarity=0.127 Sum_probs=120.4
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc--------cc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD--------RL 70 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~--------~~ 70 (195)
|.+++.--|+++|.||||||||+|++.+... ..+-..|+.......++.++.+ +.|+||||-.... ..
T Consensus 1 ~~~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~Q--iIfvDTPGih~pk~~l~~~m~~~ 78 (298)
T COG1159 1 PMKFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQ--IIFVDTPGIHKPKHALGELMNKA 78 (298)
T ss_pred CCCceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCce--EEEEeCCCCCCcchHHHHHHHHH
Confidence 4567888999999999999999999999764 3455567777777777776555 4499999943322 22
Q ss_pred CCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
....+..+|+++||+|++++....+ ...++.++. .+.|+++++||+|...+.. ........+..
T Consensus 79 a~~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~--~~~pvil~iNKID~~~~~~------------~l~~~~~~~~~ 142 (298)
T COG1159 79 ARSALKDVDLILFVVDADEGWGPGD--EFILEQLKK--TKTPVILVVNKIDKVKPKT------------VLLKLIAFLKK 142 (298)
T ss_pred HHHHhccCcEEEEEEeccccCCccH--HHHHHHHhh--cCCCeEEEEEccccCCcHH------------HHHHHHHHHHh
Confidence 3445778999999999987544322 224455554 3679999999999888743 11233344444
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
......++++||++|.|++.+.+.+...+.+.-
T Consensus 143 ~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 143 LLPFKEIVPISALKGDNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred hCCcceEEEeeccccCCHHHHHHHHHHhCCCCC
Confidence 555567899999999999999999999887543
No 179
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=1.9e-22 Score=141.48 Aligned_cols=163 Identities=17% Similarity=0.175 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccce-----eEEe-------------------------C--C---
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-----PFTV-------------------------D--G--- 51 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~-----~~~~-------------------------~--~--- 51 (195)
++|+++|+.|+|||||+..+.+..... .........+. .+.+ . +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~-~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVR-FKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGET 79 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC-CCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcc
Confidence 589999999999999999997541110 00000000000 0000 0 1
Q ss_pred -EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhh
Q psy10443 52 -IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLN 130 (195)
Q Consensus 52 -~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~ 130 (195)
....+.|||+||++.+...+...+.++|++++|+|++++.........| ..+... ...|+++++||+|+.......
T Consensus 80 ~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~~~~~~-~~~~iiivvNK~Dl~~~~~~~- 156 (203)
T cd01888 80 KLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-AALEIM-GLKHIIIVQNKIDLVKEEQAL- 156 (203)
T ss_pred ccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-HHHHHc-CCCcEEEEEEchhccCHHHHH-
Confidence 1156789999999988877777888999999999998742111111112 222221 234799999999997532211
Q ss_pred hhhhcCCCCccHHHHHHHHHHc--CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 131 LLSEQNLSPVKREQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
...++.+.+...+ ..++++++||++|+|++++++.|.+.+.++
T Consensus 157 ---------~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 157 ---------ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred ---------HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 1112333444332 236799999999999999999999877654
No 180
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.89 E-value=3.6e-22 Score=158.75 Aligned_cols=162 Identities=20% Similarity=0.149 Sum_probs=111.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC---CCCCcccce-eeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS---FPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~t~-~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
+.|+++|.+++|||||+++|++.. ++.++.++. .+.....+..++ +.+.+||+||++.|......++.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 479999999999999999999632 332322222 121122344455 67789999999999888888889999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC---CceeE
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR---AVKYM 158 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 158 (195)
+|+|+++....+... .+..+... ++| +++++||+|+....... ...+++..+...++ .++++
T Consensus 79 LVVDa~~G~~~qT~e--hl~il~~l--gi~~iIVVlNK~Dlv~~~~~~----------~~~~ei~~~l~~~~~~~~~~ii 144 (581)
T TIGR00475 79 LVVDADEGVMTQTGE--HLAVLDLL--GIPHTIVVITKADRVNEEEIK----------RTEMFMKQILNSYIFLKNAKIF 144 (581)
T ss_pred EEEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEECCCCCCHHHHH----------HHHHHHHHHHHHhCCCCCCcEE
Confidence 999999842222211 22233322 677 99999999997643210 12234555555542 37899
Q ss_pred EeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
++||++|+|+++++..+.+.+.....
T Consensus 145 ~vSA~tG~GI~eL~~~L~~l~~~~~~ 170 (581)
T TIGR00475 145 KTSAKTGQGIGELKKELKNLLESLDI 170 (581)
T ss_pred EEeCCCCCCchhHHHHHHHHHHhCCC
Confidence 99999999999999998887665443
No 181
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.89 E-value=4.3e-22 Score=138.26 Aligned_cols=163 Identities=20% Similarity=0.189 Sum_probs=108.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcc-----------cce---eecc---ceeEEeC--CEEEEEEEEeCCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYV-----------PTV---FDNY---SAPFTVD--GIPVSLGLWDTAGQ 64 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~-----------~t~---~~~~---~~~~~~~--~~~~~l~~~D~~G~ 64 (195)
++..+|+++|+.++|||||+++|.......... ... .... ....... .....+.++|+||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 356899999999999999999998643211100 000 0000 1112222 34456779999999
Q ss_pred ccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
..|.......+..+|++|+|+|+.+....+... .+..+... ++|+++++||+|+...... . ...+.
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~--~l~~~~~~--~~p~ivvlNK~D~~~~~~~-~---------~~~~~ 146 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEE--HLKILREL--GIPIIVVLNKMDLIEKELE-E---------IIEEI 146 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHH--HHHHHHHT--T-SEEEEEETCTSSHHHHH-H---------HHHHH
T ss_pred cceeecccceecccccceeeeeccccccccccc--cccccccc--ccceEEeeeeccchhhhHH-H---------HHHHH
Confidence 998877777899999999999998765544332 34444444 7899999999999843211 0 11111
Q ss_pred HHHHHHHcC-----CceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 145 GQKLANKIR-----AVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 145 ~~~~~~~~~-----~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
...+.+.++ .++++++||.+|.|++++++.|.+.++
T Consensus 147 ~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 147 KEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 224444332 368999999999999999999998765
No 182
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.89 E-value=1.2e-22 Score=140.04 Aligned_cols=150 Identities=17% Similarity=0.138 Sum_probs=95.0
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccce-eEEeCCEEEEEEEEeCCCCcc----------ccccC
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAGQED----------YDRLR 71 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~~~D~~G~~~----------~~~~~ 71 (195)
..+..+|+++|.+|+|||||++++++..+...+.++....... .+..++ .+.+||+||... +..+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 4567899999999999999999999875333333333222111 122232 467999999532 22222
Q ss_pred CCCCC---CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHH
Q psy10443 72 PLSYP---QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKL 148 (195)
Q Consensus 72 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (195)
..+++ .++++++|+|++++-+..+.. +...+... +.|+++++||+|+....... ...++++.+
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~~~--~~pviiv~nK~D~~~~~~~~----------~~~~~i~~~ 157 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDLE--MLEWLRER--GIPVLIVLTKADKLKKSELN----------KQLKKIKKA 157 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECcccCCHHHHH----------HHHHHHHHH
Confidence 23443 468999999998765544442 33444433 78999999999997543211 122344444
Q ss_pred HHHcC-CceeEEeccCCcccHH
Q psy10443 149 ANKIR-AVKYMECSALTQRGLR 169 (195)
Q Consensus 149 ~~~~~-~~~~~~~Sa~~~~~v~ 169 (195)
....+ ..+++++||++|+|++
T Consensus 158 l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 158 LKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HhhccCCCceEEEECCCCCCCC
Confidence 44442 2479999999999973
No 183
>KOG0072|consensus
Probab=99.88 E-value=5.5e-23 Score=130.29 Aligned_cols=165 Identities=20% Similarity=0.253 Sum_probs=123.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.++.+|+++|..|+|||++.-++.-++.. ...||.+.+.. .+.-++.++++||+.|+...+..|+.|+.+.|++|+
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 37899999999999999999888876653 33455544433 222366778899999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+|.+|.+........+..++.+. ..+..+++++||.|........+....+. ...+-+. .+.+|++||
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~--------l~~Lk~r--~~~Iv~tSA 161 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLG--------LQKLKDR--IWQIVKTSA 161 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhC--------hHHHhhh--eeEEEeecc
Confidence 999999888776655566666553 34678899999999876543322211111 1222222 278999999
Q ss_pred CCcccHHHHHHHHHHHHcCC
Q psy10443 163 LTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~~~ 182 (195)
.+|+|+++.++|+.+.+.+.
T Consensus 162 ~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 162 VKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred ccccCCcHHHHHHHHHHhcc
Confidence 99999999999999887653
No 184
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=5.7e-22 Score=154.00 Aligned_cols=152 Identities=20% Similarity=0.209 Sum_probs=109.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCc--------cccccCCCCCCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE--------DYDRLRPLSYPQ 77 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~--------~~~~~~~~~~~~ 77 (195)
+|+++|.+|||||||+++|++... ...+.+++.+.......+++.. +.+|||||.. .+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGRE--FILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeE--EEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998653 3445555555555666667765 5699999963 233344557889
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCcee
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKY 157 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
+|++++|+|+.++....+. .+...++.. +.|+++|+||+|+..... . ..+ ...++..++
T Consensus 79 ad~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~~------------~----~~~-~~~lg~~~~ 137 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKEDA------------V----AAE-FYSLGFGEP 137 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCcccc------------c----HHH-HHhcCCCCe
Confidence 9999999999876444332 244445443 789999999999865421 1 111 234554578
Q ss_pred EEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+++||++|.|++++++.+.+.+...
T Consensus 138 ~~vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 138 IPISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred EEEeCCcCCChHHHHHHHHHhcCcc
Confidence 9999999999999999999887654
No 185
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.88 E-value=4.8e-22 Score=159.81 Aligned_cols=161 Identities=17% Similarity=0.245 Sum_probs=110.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceee---ccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFD---NYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
.++.+|+++|..++|||||+++|....+.....+.... .+......++..+.+.||||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 36679999999999999999999987664332222211 112222333455788899999999999999889999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHH---HHHHc-CCce
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQK---LANKI-RAVK 156 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~ 156 (195)
+|+|+|+++....+... .| ..+.. .++|+++++||+|+...... . + .++... +...+ +.++
T Consensus 322 aILVVDA~dGv~~QT~E-~I-~~~k~--~~iPiIVViNKiDl~~~~~e-~---------v-~~eL~~~~ll~e~~g~~vp 386 (742)
T CHL00189 322 AILIIAADDGVKPQTIE-AI-NYIQA--ANVPIIVAINKIDKANANTE-R---------I-KQQLAKYNLIPEKWGGDTP 386 (742)
T ss_pred EEEEEECcCCCChhhHH-HH-HHHHh--cCceEEEEEECCCccccCHH-H---------H-HHHHHHhccchHhhCCCce
Confidence 99999998754333322 12 22222 37899999999998653210 0 0 001111 11222 2368
Q ss_pred eEEeccCCcccHHHHHHHHHHHH
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
++++||++|.|+++++++|....
T Consensus 387 vv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 387 MIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred EEEEECCCCCCHHHHHHhhhhhh
Confidence 99999999999999999988754
No 186
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=1.3e-21 Score=151.18 Aligned_cols=160 Identities=17% Similarity=0.150 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc----cc---CCCCCCCc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD----RL---RPLSYPQT 78 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~----~~---~~~~~~~~ 78 (195)
..|+++|.||||||||+++|++... ..+|..|+.......+.+.+. .+.+||+||..... .+ ....++.+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~--~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDT--RFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCe--EEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 4899999999999999999998643 245555665444555556554 56699999953211 11 11235679
Q ss_pred cEEEEEEeCCCh----hcHHHHHHhhHHHHhhh------------CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccH
Q psy10443 79 DVFLICYSVVSP----SSFDNVTSKWYPELKHH------------CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR 142 (195)
Q Consensus 79 d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~------------~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~ 142 (195)
+++|+|+|+++. +.+.+.. .|...+..+ ..+.|++||+||+|+..... . .
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~-~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e------------l-~ 303 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDID-ALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE------------L-A 303 (500)
T ss_pred CEEEEEECCcccccccCchhhHH-HHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH------------H-H
Confidence 999999999863 2333333 233333322 23689999999999865422 1 1
Q ss_pred HHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 143 EQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+.........+ ++++++||+++.|+++++.+|.+.+...+
T Consensus 304 e~l~~~l~~~g-~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 304 EFVRPELEARG-WPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HHHHHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 11222223334 68999999999999999999999876543
No 187
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=2.5e-21 Score=148.50 Aligned_cols=156 Identities=19% Similarity=0.153 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEEeCCEEEEEEEEeCCCCccc--cccC------CCCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY--DRLR------PLSYPQ 77 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~--~~~~------~~~~~~ 77 (195)
.+|+++|.+|+|||||+|+|++.... .+...++.+.....+.+.+. ..+.+|||||..+. ...+ ...++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999986542 23334444444444555443 14569999997332 1111 223678
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCce
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVK 156 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
+|++++|+|++++.+...... |...+... ..+.|+++|+||+|+..... .... ....+...
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~---------------~~~~--~~~~~~~~ 338 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFE---------------PRID--RDEENKPI 338 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchh---------------HHHH--HHhcCCCc
Confidence 999999999999887766542 44444432 24789999999999864311 0000 01123122
Q ss_pred eEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 157 YMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 157 ~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
++.+||++|.|+++++++|.+.+..
T Consensus 339 ~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 339 RVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 5889999999999999999998753
No 188
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=3e-21 Score=156.50 Aligned_cols=161 Identities=17% Similarity=0.214 Sum_probs=108.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccce-eeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV-FDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.++..|+++|..++|||||+++|....+.....+.. .......+.+++ ..+.|||||||+.|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 467899999999999999999998876654332222 111123344454 45679999999999999988899999999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC-CceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR-AVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~S 161 (195)
+|||+++...-+... .| ..... .++|+++++||+|+...+.. .....+ .+...++..++ .++++++|
T Consensus 366 LVVdAddGv~~qT~e-~i-~~a~~--~~vPiIVviNKiDl~~a~~e-~V~~eL-------~~~~~~~e~~g~~vp~vpvS 433 (787)
T PRK05306 366 LVVAADDGVMPQTIE-AI-NHAKA--AGVPIIVAINKIDKPGANPD-RVKQEL-------SEYGLVPEEWGGDTIFVPVS 433 (787)
T ss_pred EEEECCCCCCHhHHH-HH-HHHHh--cCCcEEEEEECccccccCHH-HHHHHH-------HHhcccHHHhCCCceEEEEe
Confidence 999998753322222 12 22222 37999999999999653210 000000 00011122222 36899999
Q ss_pred cCCcccHHHHHHHHHHH
Q psy10443 162 ALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~ 178 (195)
|++|.|+++++++|...
T Consensus 434 AktG~GI~eLle~I~~~ 450 (787)
T PRK05306 434 AKTGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCCCchHHHHhhhhh
Confidence 99999999999998753
No 189
>KOG4423|consensus
Probab=99.88 E-value=4.4e-24 Score=140.94 Aligned_cols=165 Identities=25% Similarity=0.405 Sum_probs=139.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEE-EEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIP-VSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~-~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
+|++|+|.-|+|||+++.++....+...|..|.+..+ ...+..++.. +++++||.+||++|..+..-|++.+++..+|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 7999999999999999999999988888888887766 4555665544 7899999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh-----CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEE
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH-----CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYME 159 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (195)
+|++..-.++... .|.+.+... ...+|+++.+||||..+... ........+|+++++....++
T Consensus 106 fdvt~s~tfe~~s-kwkqdldsk~qLpng~Pv~~vllankCd~e~~a~-----------~~~~~~~d~f~kengf~gwte 173 (229)
T KOG4423|consen 106 FDVTRSLTFEPVS-KWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK-----------NEATRQFDNFKKENGFEGWTE 173 (229)
T ss_pred EEccccccccHHH-HHHHhccCcccCCCCCcchheeccchhccChHhh-----------hhhHHHHHHHHhccCccceee
Confidence 9999998888876 588887653 23588999999999866431 122467888999999889999
Q ss_pred eccCCcccHHHHHHHHHHHHcCCC
Q psy10443 160 CSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+|++.+.++.++-..+++.+....
T Consensus 174 ts~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 174 TSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred eccccccChhHHHHHHHHHHHhhc
Confidence 999999999999999999876554
No 190
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.87 E-value=3.7e-21 Score=152.33 Aligned_cols=171 Identities=16% Similarity=0.210 Sum_probs=104.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc---eeEEe-C--------CEE-----EEEEEEeCCCCccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS---APFTV-D--------GIP-----VSLGLWDTAGQEDY 67 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~---~~~~~-~--------~~~-----~~l~~~D~~G~~~~ 67 (195)
++--|+++|.+++|||||+++|.+..+.....++...... ..... . ... ..+.||||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 4456999999999999999999987664332221111100 00000 0 011 13779999999999
Q ss_pred cccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhh---hhh--hc-------
Q psy10443 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLN---LLS--EQ------- 135 (195)
Q Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~---~~~--~~------- 135 (195)
..++..+++.+|++++|+|+++....+... .+..+.. .++|+++++||+|+...-.... ..+ ..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e--~i~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQE--ALNILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHH--HHHHHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 999888999999999999999743322221 1222332 2789999999999964211000 000 00
Q ss_pred -------------CCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 136 -------------NLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 136 -------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
.......+.........+.++++++||++|+|+++++++|....
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 00000000000111122347899999999999999999887543
No 191
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.87 E-value=2.1e-21 Score=150.29 Aligned_cols=160 Identities=13% Similarity=0.096 Sum_probs=101.4
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCC--CCCC------------------------------cccceeeccceeEE
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDS--FPGE------------------------------YVPTVFDNYSAPFT 48 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~ 48 (195)
|+.++.++|+++|.+++|||||+++|+... +... ...++.+.... .
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~--~ 78 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHK--K 78 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeE--E
Confidence 788999999999999999999999998431 1110 01111111111 2
Q ss_pred eCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHh
Q psy10443 49 VDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRET 128 (195)
Q Consensus 49 ~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~ 128 (195)
+....+.+.+||+||++.|.......+..+|++++|+|++++.+.......++..+... ...|+++++||+|+......
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~ 157 (425)
T PRK12317 79 FETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDEK 157 (425)
T ss_pred EecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccHH
Confidence 23344677899999998886655566789999999999987322211111122233322 22468999999999752210
Q ss_pred hhhhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHHHH
Q psy10443 129 LNLLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLRQV 171 (195)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~ 171 (195)
.. ....+++..+....+ .++++++||++|+|+++.
T Consensus 158 ~~--------~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 158 RY--------EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HH--------HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 00 012244555555554 257999999999999873
No 192
>KOG1673|consensus
Probab=99.87 E-value=2.2e-21 Score=124.65 Aligned_cols=167 Identities=23% Similarity=0.462 Sum_probs=135.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
-.+||.++|++..|||||+-.+.++.+.+++..+.+.++ ...+.+.+..+.+.+||++|++++..+.+....++-+++|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 468999999999999999999999988777777766665 5778889999999999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
++|++.+..+..+.+ |....+..+...--++|++|.|..-..+++. .-.....++.+++..+ .+.+.+|+.
T Consensus 99 mFDLt~r~TLnSi~~-WY~QAr~~NktAiPilvGTKyD~fi~lp~e~-------Q~~I~~qar~YAk~mn-AsL~F~Sts 169 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKE-WYRQARGLNKTAIPILVGTKYDLFIDLPPEL-------QETISRQARKYAKVMN-ASLFFCSTS 169 (205)
T ss_pred EEecCchHHHHHHHH-HHHHHhccCCccceEEeccchHhhhcCCHHH-------HHHHHHHHHHHHHHhC-CcEEEeecc
Confidence 999999999999985 9888887765444466799999754322111 0012234667777777 589999999
Q ss_pred CcccHHHHHHHHHHHHc
Q psy10443 164 TQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~ 180 (195)
.+.|+++.|.-+.-.+.
T Consensus 170 ~sINv~KIFK~vlAklF 186 (205)
T KOG1673|consen 170 HSINVQKIFKIVLAKLF 186 (205)
T ss_pred ccccHHHHHHHHHHHHh
Confidence 99999999998766654
No 193
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=5.6e-21 Score=143.31 Aligned_cols=162 Identities=22% Similarity=0.240 Sum_probs=122.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccc----------ccc-C
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY----------DRL-R 71 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~----------~~~-~ 71 (195)
.++||+++|-||+|||||+|++++.+ +..+..+|+.+.....+..+++.+. ++||+|-.+- ... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~--liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYV--LIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEE--EEECCCCCcccccccceEEEeehhh
Confidence 57999999999999999999999964 4566778889988889999999888 9999994322 111 2
Q ss_pred CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 72 PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
...+..+|.+++|+|++.+-+.++.. ....+.+. +.+++|++||+|+.+.+.... ..-.+++.+....
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~--ia~~i~~~--g~~~vIvvNKWDl~~~~~~~~--------~~~k~~i~~~l~~ 322 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLR--IAGLIEEA--GRGIVIVVNKWDLVEEDEATM--------EEFKKKLRRKLPF 322 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHH--HHHHHHHc--CCCeEEEEEccccCCchhhHH--------HHHHHHHHHHhcc
Confidence 23466799999999999887777654 55666655 889999999999987532110 0112234444444
Q ss_pred cCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 152 IRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 152 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.+..+++.+||++|.|+.++|+.+.+...
T Consensus 323 l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 323 LDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred ccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 55578999999999999999999877554
No 194
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.87 E-value=1e-20 Score=154.08 Aligned_cols=154 Identities=14% Similarity=0.165 Sum_probs=111.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCC----------
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRP---------- 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~---------- 72 (195)
++.++|+++|++|+|||||+|+|++... ..++..++.+.....+..++ ..+.+||+||...+.....
T Consensus 1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~ 78 (772)
T PRK09554 1 MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (772)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHH
Confidence 4578999999999999999999998643 24555555544444444444 4566999999877653211
Q ss_pred CC--CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 73 LS--YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 73 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
.+ ...+|++++|+|+++.+.... |...+.+. ++|+++++||+|+.+.. .. ..+.+++.+
T Consensus 79 ~~l~~~~aD~vI~VvDat~ler~l~----l~~ql~e~--giPvIvVlNK~Dl~~~~------------~i-~id~~~L~~ 139 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLERNLY----LTLQLLEL--GIPCIVALNMLDIAEKQ------------NI-RIDIDALSA 139 (772)
T ss_pred HHHhccCCCEEEEEecCCcchhhHH----HHHHHHHc--CCCEEEEEEchhhhhcc------------Cc-HHHHHHHHH
Confidence 12 247899999999998655332 33334333 79999999999986542 12 345667777
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
.++ ++++++|+++|+|++++++.+.+..
T Consensus 140 ~LG-~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 140 RLG-CPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred HhC-CCEEEEEeecCCCHHHHHHHHHHhh
Confidence 888 6999999999999999999988765
No 195
>KOG0074|consensus
Probab=99.87 E-value=1e-21 Score=124.21 Aligned_cols=164 Identities=20% Similarity=0.270 Sum_probs=119.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.++++|+++|..++|||||+.+|.+... ..-.||.+.+. ..+.. +..+.+++||.+|+...+..|..|+.+.|++|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~-k~v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNT-KKVEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcce-EEEee-cCcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 5789999999999999999999997543 22333433332 23333 345789999999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEecc
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSA 162 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (195)
|+|.+|...+++.-.++.+.+... ...+|+.+.+||.|+...-..++........ ..+...+.+-++|+
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~----------~lrdRswhIq~csa 161 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLA----------GLRDRSWHIQECSA 161 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchh----------hhhhceEEeeeCcc
Confidence 999999988888766565555543 4679999999999987653322221111110 11112366788999
Q ss_pred CCcccHHHHHHHHHHHHc
Q psy10443 163 LTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 163 ~~~~~v~~~~~~l~~~~~ 180 (195)
.+++|+..-.+|+.+...
T Consensus 162 ls~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 162 LSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred ccccCccCcchhhhcCCC
Confidence 999999988888766543
No 196
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.87 E-value=4.5e-21 Score=148.39 Aligned_cols=157 Identities=13% Similarity=0.082 Sum_probs=100.5
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhc--CCCCCCc------------------------------ccceeeccceeEEeC
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTT--DSFPGEY------------------------------VPTVFDNYSAPFTVD 50 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~--~~~~~~~------------------------------~~t~~~~~~~~~~~~ 50 (195)
.++.++|+++|+.++|||||+++|+. +.+.... ...+.+.. ...+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~--~~~~~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVA--HWKFE 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEE--EEEEc
Confidence 35679999999999999999999986 2221100 00111111 11223
Q ss_pred CEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHh-hHHHHhhhCCCCcEEEEeeCCCcccchHhh
Q psy10443 51 GIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSK-WYPELKHHCPDAPIILVGTKIDLREDRETL 129 (195)
Q Consensus 51 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~ 129 (195)
...+.+.+||+||++.|.......+..+|++++|+|+++.++....... +.... ......|+++++||+|+.......
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCCCeEEEEEEChhccCccHHH
Confidence 3446778999999998876666678899999999999987543211111 11222 222245799999999996422100
Q ss_pred hhhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHHH
Q psy10443 130 NLLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLRQ 170 (195)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~ 170 (195)
.....+++..+.+..+ .++++++||++|.|+.+
T Consensus 161 --------~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 161 --------FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred --------HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 0012345666666654 26799999999999986
No 197
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.87 E-value=4e-21 Score=153.01 Aligned_cols=145 Identities=18% Similarity=0.236 Sum_probs=105.4
Q ss_pred cCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc------CCCCC--CCccEEEE
Q psy10443 13 GDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL------RPLSY--PQTDVFLI 83 (195)
Q Consensus 13 G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~------~~~~~--~~~d~~i~ 83 (195)
|++|+|||||+|++++... ..++..++.+.......+++.. +++||+||+.++... ...++ +.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~--i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGED--IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeE--EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998765 3445555555555556666655 569999999877543 22232 47899999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|+|+++.+.... +...+.+ .++|+++++||+|+.+.. .. ..+.+.+.+.++ ++++++||+
T Consensus 79 VvDat~ler~l~----l~~ql~~--~~~PiIIVlNK~Dl~~~~------------~i-~~d~~~L~~~lg-~pvv~tSA~ 138 (591)
T TIGR00437 79 VVDASNLERNLY----LTLQLLE--LGIPMILALNLVDEAEKK------------GI-RIDEEKLEERLG-VPVVPTSAT 138 (591)
T ss_pred EecCCcchhhHH----HHHHHHh--cCCCEEEEEehhHHHHhC------------CC-hhhHHHHHHHcC-CCEEEEECC
Confidence 999987543221 2223332 379999999999986532 12 234567777887 799999999
Q ss_pred CcccHHHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVRAV 179 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~ 179 (195)
+|+|++++++++.+..
T Consensus 139 tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 139 EGRGIERLKDAIRKAI 154 (591)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998764
No 198
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=6.1e-21 Score=144.87 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=110.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc----c---CCCCCCCcc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR----L---RPLSYPQTD 79 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~----~---~~~~~~~~d 79 (195)
.|+++|.||||||||+|+|++... ...++.|+.......+...+. ..+.|+|+||...-.+ + ....++.++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 799999999999999999998643 345566665555555555432 2456999999643211 1 112467899
Q ss_pred EEEEEEeCC---ChhcHHHHHHhhHHHHhhhC---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 80 VFLICYSVV---SPSSFDNVTSKWYPELKHHC---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 80 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
++++|+|++ +.+.+.... .|+..+..+. .+.|+++|+||+|+..... ..+....+...++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~-~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-------------l~~~l~~l~~~~~ 305 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENAR-IIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-------------AEERAKAIVEALG 305 (390)
T ss_pred EEEEEeccCcccccChHHHHH-HHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-------------HHHHHHHHHHHhC
Confidence 999999998 344555544 3666666543 4689999999999865421 1223344444433
Q ss_pred C-ceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 154 A-VKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 154 ~-~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
. .+++.+||+++.|++++++.|.+.+.+.
T Consensus 306 ~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 306 WEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 2 3689999999999999999999988653
No 199
>KOG0096|consensus
Probab=99.86 E-value=1.1e-21 Score=130.06 Aligned_cols=159 Identities=28% Similarity=0.417 Sum_probs=132.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCE-EEEEEEEeCCCCccccccCCCCCCCccEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGI-PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 84 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (195)
.++++++|..|.|||+++.++..+.|...+.+|.+..........+. .+++..||++|++.+.....-++-+..+.|++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 68999999999999999999999999999999987776554444333 59999999999999999999999999999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
+|++..-.+..+.. |...+.+...++|+++.+||.|..... .......+-+... +.+++.||++
T Consensus 90 FdVtsr~t~~n~~r-whrd~~rv~~NiPiv~cGNKvDi~~r~--------------~k~k~v~~~rkkn-l~y~~iSaks 153 (216)
T KOG0096|consen 90 FDVTSRFTYKNVPR-WHRDLVRVRENIPIVLCGNKVDIKARK--------------VKAKPVSFHRKKN-LQYYEISAKS 153 (216)
T ss_pred eeeeehhhhhcchH-HHHHHHHHhcCCCeeeeccceeccccc--------------cccccceeeeccc-ceeEEeeccc
Confidence 99999999988874 888888777789999999999986642 1112222333333 7899999999
Q ss_pred cccHHHHHHHHHHHHc
Q psy10443 165 QRGLRQVFDEAVRAVL 180 (195)
Q Consensus 165 ~~~v~~~~~~l~~~~~ 180 (195)
+.|.+.-|-|+.+.+.
T Consensus 154 n~NfekPFl~LarKl~ 169 (216)
T KOG0096|consen 154 NYNFERPFLWLARKLT 169 (216)
T ss_pred ccccccchHHHhhhhc
Confidence 9999999999998764
No 200
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.86 E-value=1.3e-20 Score=127.14 Aligned_cols=153 Identities=20% Similarity=0.236 Sum_probs=102.7
Q ss_pred EEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCC-------CCCCCccEE
Q psy10443 11 VVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRP-------LSYPQTDVF 81 (195)
Q Consensus 11 v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~-------~~~~~~d~~ 81 (195)
++|.+|+|||||++++++.... ....+++............ ...+.+||+||...+..... .+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999986443 2222333232222222221 45677999999877654443 367889999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
++|+|+++..+..... +...... .+.|+++++||+|+.......... +.........+..+++++|
T Consensus 80 l~v~~~~~~~~~~~~~--~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~s 145 (163)
T cd00880 80 LFVVDADLRADEEEEK--LLELLRE--RGKPVLLVLNKIDLLPEEEEEELL----------ELRLLILLLLLGLPVIAVS 145 (163)
T ss_pred EEEEeCCCCCCHHHHH--HHHHHHh--cCCeEEEEEEccccCChhhHHHHH----------HHHHhhcccccCCceEEEe
Confidence 9999999987766653 2233322 378999999999997754311100 0011222333447899999
Q ss_pred cCCcccHHHHHHHHHHH
Q psy10443 162 ALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~ 178 (195)
++++.|+++++.++.+.
T Consensus 146 a~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 146 ALTGEGIDELREALIEA 162 (163)
T ss_pred eeccCCHHHHHHHHHhh
Confidence 99999999999998875
No 201
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=1e-20 Score=154.31 Aligned_cols=153 Identities=18% Similarity=0.169 Sum_probs=105.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccc--------cccCCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY--------DRLRPLSY 75 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~--------~~~~~~~~ 75 (195)
..+|+++|.+|||||||+++|++... ....+.++.+.......+++.. +.+|||||.+.. ......++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTD--FKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEE--EEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 35899999999999999999998653 2334444444444455556654 559999997632 12233457
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
+.+|++|+|+|+++.-. .....|...++. .+.|+++|+||+|+.... ......+...++
T Consensus 353 ~~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~---------------~~~~~~~~lg~~-- 411 (712)
T PRK09518 353 SLADAVVFVVDGQVGLT--STDERIVRMLRR--AGKPVVLAVNKIDDQASE---------------YDAAEFWKLGLG-- 411 (712)
T ss_pred HhCCEEEEEEECCCCCC--HHHHHHHHHHHh--cCCCEEEEEECcccccch---------------hhHHHHHHcCCC--
Confidence 89999999999986433 222235555654 389999999999985431 111222222333
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
..+++||++|.|+++++++|.+.+..
T Consensus 412 ~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 412 EPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CeEEEECCCCCCchHHHHHHHHhccc
Confidence 46799999999999999999998865
No 202
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.86 E-value=5.4e-20 Score=131.36 Aligned_cols=150 Identities=19% Similarity=0.157 Sum_probs=101.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc-------cCCCCCCCcc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR-------LRPLSYPQTD 79 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-------~~~~~~~~~d 79 (195)
+|+++|.+|+|||||+++|++... ...+..++.......+.+++. .+++||+||...... ....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGA--KIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCe--EEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998652 344455554444455556664 566999999754321 1234688999
Q ss_pred EEEEEEeCCChhc-HHHHHHhhH-----------------------------------------HHHhhh----------
Q psy10443 80 VFLICYSVVSPSS-FDNVTSKWY-----------------------------------------PELKHH---------- 107 (195)
Q Consensus 80 ~~i~v~d~~~~~s-~~~~~~~~~-----------------------------------------~~~~~~---------- 107 (195)
++++|+|+++++. ...+.+ .+ ..++++
T Consensus 80 ~il~V~D~t~~~~~~~~~~~-~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 80 LILMVLDATKPEGHREILER-ELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred EEEEEecCCcchhHHHHHHH-HHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 9999999987653 222211 11 011111
Q ss_pred ---------------CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHH
Q psy10443 108 ---------------CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172 (195)
Q Consensus 108 ---------------~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 172 (195)
..-+|+++|+||+|+... ++...++.. .+++++||+++.|++++|
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----------------~~~~~~~~~---~~~~~~SA~~g~gi~~l~ 218 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----------------EELDLLARQ---PNSVVISAEKGLNLDELK 218 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----------------HHHHHHhcC---CCEEEEcCCCCCCHHHHH
Confidence 112699999999998643 233344433 358999999999999999
Q ss_pred HHHHHHHc
Q psy10443 173 DEAVRAVL 180 (195)
Q Consensus 173 ~~l~~~~~ 180 (195)
+.+.+.+-
T Consensus 219 ~~i~~~L~ 226 (233)
T cd01896 219 ERIWDKLG 226 (233)
T ss_pred HHHHHHhC
Confidence 99988653
No 203
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=1.4e-20 Score=141.28 Aligned_cols=151 Identities=20% Similarity=0.166 Sum_probs=113.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc---------ccCCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD---------RLRPLSY 75 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~---------~~~~~~~ 75 (195)
..|+++|-||||||||+|||++... ..++++++.+.......+.+..+ .++||+|-+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f--~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREF--ILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceE--EEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 6799999999999999999999764 47788888888888888888874 599999965332 2233456
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
..||++|||+|....-+-.+. .....++. .+.|+++|+||+|-.... ....+.+...+ -
T Consensus 82 ~eADvilfvVD~~~Git~~D~--~ia~~Lr~--~~kpviLvvNK~D~~~~e---------------~~~~efyslG~--g 140 (444)
T COG1160 82 EEADVILFVVDGREGITPADE--EIAKILRR--SKKPVILVVNKIDNLKAE---------------ELAYEFYSLGF--G 140 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHH--HHHHHHHh--cCCCEEEEEEcccCchhh---------------hhHHHHHhcCC--C
Confidence 789999999999875443332 24455553 268999999999975331 11222233334 4
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.++.+||.+|.|+.++++.+.+.+.
T Consensus 141 ~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 141 EPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred CceEeehhhccCHHHHHHHHHhhcC
Confidence 6899999999999999999999984
No 204
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.85 E-value=7.4e-21 Score=146.06 Aligned_cols=166 Identities=16% Similarity=0.148 Sum_probs=105.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccc------eeec-----------------cceeEEeCC------EEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPT------VFDN-----------------YSAPFTVDG------IPV 54 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t------~~~~-----------------~~~~~~~~~------~~~ 54 (195)
++.++|+++|..++|||||+++|.+... ..+... .... ++.....++ ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~-d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWT-DTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeec-ccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 5789999999999999999999975321 111000 0000 000000011 135
Q ss_pred EEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhh
Q psy10443 55 SLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSE 134 (195)
Q Consensus 55 ~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~ 134 (195)
.+.+||+||+++|...+......+|++++|+|++++........ .+..+... ...|+++++||+|+........
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e-~l~~l~~~-gi~~iIVvvNK~Dl~~~~~~~~---- 154 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKE-HLMALEII-GIKNIVIVQNKIDLVSKEKALE---- 154 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHH-HHHHHHHc-CCCeEEEEEEccccCCHHHHHH----
Confidence 77899999999998777777788999999999997531111121 22222221 2347899999999976432111
Q ss_pred cCCCCccHHHHHHHHHHc--CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 135 QNLSPVKREQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
..+++..+.... ..++++++||++|+|+++++++|...+..+
T Consensus 155 ------~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~ 198 (406)
T TIGR03680 155 ------NYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTP 198 (406)
T ss_pred ------HHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCC
Confidence 112333333332 236899999999999999999999877644
No 205
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.85 E-value=7.3e-21 Score=134.54 Aligned_cols=112 Identities=18% Similarity=0.191 Sum_probs=78.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCC-----------ccccee------ecc---ceeEEe---CCEEEEEEEEeCCCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGE-----------YVPTVF------DNY---SAPFTV---DGIPVSLGLWDTAGQ 64 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~-----------~~~t~~------~~~---~~~~~~---~~~~~~l~~~D~~G~ 64 (195)
+|+++|+.|+|||||+++|+....... +..+.. ..+ ...+.+ ++..+.+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987533211 011110 000 011111 355688999999999
Q ss_pred ccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
..|......++..+|++++|+|+++..+.... .++...... +.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~--~~~~~~~~~--~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE--RLIRHAILE--GLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccC
Confidence 99987778888999999999999887665432 243443332 58999999999986
No 206
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.84 E-value=5.9e-20 Score=127.60 Aligned_cols=149 Identities=17% Similarity=0.113 Sum_probs=94.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--------CC---------CcccceeeccceeEEeCCEEEEEEEEeCCCCccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--------PG---------EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY 67 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--------~~---------~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~ 67 (195)
+.++|+++|..++|||||+++|+.... .. ....++... ....+......+.|.|+||+..|
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~~ 78 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINT--AHVEYETANRHYAHVDCPGHADY 78 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEe--eeeEecCCCeEEEEEECcCHHHH
Confidence 358999999999999999999986310 00 001111111 11122223345669999999888
Q ss_pred cccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH
Q psy10443 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ 146 (195)
Q Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (195)
.......+..+|++++|+|++....-+... ++..+... ++| +++++||+|+........ ...+++.
T Consensus 79 ~~~~~~~~~~~D~~ilVvda~~g~~~~~~~--~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~---------~~~~~i~ 145 (195)
T cd01884 79 IKNMITGAAQMDGAILVVSATDGPMPQTRE--HLLLARQV--GVPYIVVFLNKADMVDDEELLE---------LVEMEVR 145 (195)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCcEEEEEeCCCCCCcHHHHH---------HHHHHHH
Confidence 776777788999999999998753333222 33444443 566 778899999864322111 1223455
Q ss_pred HHHHHcC----CceeEEeccCCcccH
Q psy10443 147 KLANKIR----AVKYMECSALTQRGL 168 (195)
Q Consensus 147 ~~~~~~~----~~~~~~~Sa~~~~~v 168 (195)
.+....+ .++++++||++|.|.
T Consensus 146 ~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 146 ELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHhcccccCCeEEEeeCccccCC
Confidence 5555443 378999999999885
No 207
>KOG1707|consensus
Probab=99.84 E-value=7.5e-21 Score=145.43 Aligned_cols=168 Identities=26% Similarity=0.422 Sum_probs=128.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.+.++|+++|+.|+||||||..+....|+++-++. .+.+..+..+....+...+.|++..+.-+.....-++.||++.+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~r-l~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRR-LPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhcccccccc-CCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 68899999999999999999999998886543333 33334444444455556799998666555555667889999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhC---CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHH-HHHHHHHHcCCc-eeE
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHC---PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKRE-QGQKLANKIRAV-KYM 158 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~ 158 (195)
||+++++.+++.+..+|+..++... .++|+|+|+||.|...... .+.+ ........+..+ .++
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~------------~s~e~~~~pim~~f~EiEtci 153 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN------------NSDEVNTLPIMIAFAEIETCI 153 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc------------cchhHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999876 7899999999999977642 1112 233333333322 378
Q ss_pred EeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 159 ECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
+|||++-.++.++|....+++..+-.
T Consensus 154 ecSA~~~~n~~e~fYyaqKaVihPt~ 179 (625)
T KOG1707|consen 154 ECSALTLANVSELFYYAQKAVIHPTS 179 (625)
T ss_pred hhhhhhhhhhHhhhhhhhheeeccCc
Confidence 99999999999999998888876643
No 208
>PRK10218 GTP-binding protein; Provisional
Probab=99.84 E-value=1.2e-19 Score=144.28 Aligned_cols=164 Identities=14% Similarity=0.071 Sum_probs=110.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc--CCCCCCcc------------cceeecc-ceeEEeCCEEEEEEEEeCCCCccccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT--DSFPGEYV------------PTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~--~~~~~~~~------------~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~ 69 (195)
+--||+++|+.++|||||+++|+. +.+...+. .+.+..+ .....+....+.+++||+||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 456999999999999999999986 33332211 0111111 12223344457788999999999998
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA 149 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (195)
.+..+++.+|++++|+|+++....+... ++..+.. .++|.++++||+|+........ .+++..+.
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~--~l~~a~~--~gip~IVviNKiD~~~a~~~~v-----------l~ei~~l~ 148 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRF--VTKKAFA--YGLKPIVVINKVDRPGARPDWV-----------VDQVFDLF 148 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHH--HHHHHHH--cCCCEEEEEECcCCCCCchhHH-----------HHHHHHHH
Confidence 8889999999999999998754333322 2233333 2789999999999865432111 11222221
Q ss_pred HH------cCCceeEEeccCCcc----------cHHHHHHHHHHHHcCCC
Q psy10443 150 NK------IRAVKYMECSALTQR----------GLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 150 ~~------~~~~~~~~~Sa~~~~----------~v~~~~~~l~~~~~~~~ 183 (195)
.. ...+|++.+||++|. |+..+++.|.+.+..+.
T Consensus 149 ~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 149 VNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred hccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 11 112679999999998 68999999999988775
No 209
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.83 E-value=5.4e-20 Score=141.27 Aligned_cols=168 Identities=17% Similarity=0.153 Sum_probs=104.8
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCc----c-cceeecc-----------------ceeEEeC--C----EEE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEY----V-PTVFDNY-----------------SAPFTVD--G----IPV 54 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~----~-~t~~~~~-----------------~~~~~~~--~----~~~ 54 (195)
+.+.++|+++|+.++|||||+.+|.+....... . -|....+ ......+ + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 467899999999999999999999653111100 0 1111110 0000001 1 135
Q ss_pred EEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChh-cHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhh
Q psy10443 55 SLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPS-SFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 55 ~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 133 (195)
.+.+||+||++.|..........+|++++|+|++++. ..+... .+ ..+... ...|+++++||+|+.......
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l-~~l~~~-~i~~iiVVlNK~Dl~~~~~~~---- 158 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HL-MALDII-GIKNIVIVQNKIDLVSKERAL---- 158 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HH-HHHHHc-CCCcEEEEEEeeccccchhHH----
Confidence 7889999999988765555566789999999999653 222221 12 222222 124689999999997643210
Q ss_pred hcCCCCccHHHHHHHHHHc--CCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 134 EQNLSPVKREQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
...+++..+.... ...+++++||++|.|++++++.|.+.+..+.
T Consensus 159 ------~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~ 204 (411)
T PRK04000 159 ------ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTPE 204 (411)
T ss_pred ------HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCC
Confidence 1122334444332 2368999999999999999999998776543
No 210
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=8.5e-20 Score=137.38 Aligned_cols=153 Identities=24% Similarity=0.288 Sum_probs=115.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc--------CCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL--------RPLS 74 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--------~~~~ 74 (195)
..+|++++|.||+|||||+|.|.+.. +..+..+|+.+.....+.++|..++ +.||+|-.+.... ....
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~--l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVR--LVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEE--EEecCCcccCccHHHHHHHHHHHHH
Confidence 46899999999999999999999975 3467788999988999999997776 9999996544322 1234
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
+.+||.+++|+|++.+.+-.+.. .+. ....+.|+++|.||.|+..+... . .+ .....
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~--~~~---~~~~~~~~i~v~NK~DL~~~~~~--------------~---~~-~~~~~ 350 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLA--LIE---LLPKKKPIIVVLNKADLVSKIEL--------------E---SE-KLANG 350 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHH--HHH---hcccCCCEEEEEechhccccccc--------------c---hh-hccCC
Confidence 66899999999999874433332 222 23347899999999999886421 1 11 11222
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.+++.+|+++|+|++.+.+.|.+.+...
T Consensus 351 ~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 351 DAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred CceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 4689999999999999999999887655
No 211
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.83 E-value=3.7e-20 Score=147.20 Aligned_cols=162 Identities=15% Similarity=0.101 Sum_probs=108.0
Q ss_pred EEEEEcCCCCchHHHHHHhhc--CCCCCCcccc------------eeecc-ceeEEeCCEEEEEEEEeCCCCccccccCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT--DSFPGEYVPT------------VFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRP 72 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~--~~~~~~~~~t------------~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~ 72 (195)
||+++|+.++|||||+++|+. +.+....... .+..+ .....+....+++++|||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 799999999999999999986 3332211000 00111 11122233346777999999999988888
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI 152 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (195)
.+++.+|++++|+|+++...-+ .. .|+..+... ++|+++++||+|+....... + .++...+...+
T Consensus 83 ~~l~~aD~alLVVDa~~G~~~q-T~-~~l~~a~~~--~ip~IVviNKiD~~~a~~~~----------v-~~ei~~l~~~~ 147 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPMPQ-TR-FVLKKALEL--GLKPIVVINKIDRPSARPDE----------V-VDEVFDLFAEL 147 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCcHH-HH-HHHHHHHHC--CCCEEEEEECCCCCCcCHHH----------H-HHHHHHHHHhh
Confidence 8999999999999998743222 22 244444443 78999999999986532110 1 12222222211
Q ss_pred ------CCceeEEeccCCcc----------cHHHHHHHHHHHHcCCCc
Q psy10443 153 ------RAVKYMECSALTQR----------GLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 153 ------~~~~~~~~Sa~~~~----------~v~~~~~~l~~~~~~~~~ 184 (195)
-.++++.+||++|. |+..+|+.+.+.+..+..
T Consensus 148 g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~ 195 (594)
T TIGR01394 148 GADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKG 195 (594)
T ss_pred ccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCC
Confidence 12579999999996 799999999999987753
No 212
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.83 E-value=2.2e-19 Score=142.74 Aligned_cols=169 Identities=18% Similarity=0.221 Sum_probs=102.1
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCccc----ceeeccceeEE---eCCEE-----E-----EEEEEeCCCCc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVP----TVFDNYSAPFT---VDGIP-----V-----SLGLWDTAGQE 65 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~----t~~~~~~~~~~---~~~~~-----~-----~l~~~D~~G~~ 65 (195)
+.++..|+++|.+++|||||+++|.+..+.....+ +.+..+..... ..+.. . .+.||||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 34667899999999999999999987654322221 11111110000 00111 1 15799999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCC---hhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhh---hhh------
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVS---PSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLN---LLS------ 133 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~---~~~------ 133 (195)
.|..++...+..+|++++|+|+++ +.++..+ ..+.. .++|+++++||+|+...-.... ..+
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-----~~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAI-----NILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-----HHHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 999888888889999999999997 4444333 22222 3789999999999852110000 000
Q ss_pred ----------------hcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 134 ----------------EQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 134 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
.+....+..+.........+.++++++||++|+|++++++.+...
T Consensus 156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 000000000000000011234789999999999999999887653
No 213
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.83 E-value=1e-19 Score=145.37 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC---CCCCc--ccceeeccceeEEe-CCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS---FPGEY--VPTVFDNYSAPFTV-DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~---~~~~~--~~t~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
+-|.++|..++|||||+++|++.. +.++. ..|....+. .... ++. .+.+||+||+++|.......+..+|+
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~-~~~~~~g~--~i~~IDtPGhe~fi~~m~~g~~~~D~ 77 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYA-YWPQPDGR--VLGFIDVPGHEKFLSNMLAGVGGIDH 77 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeE-EEecCCCc--EEEEEECCCHHHHHHHHHHHhhcCCE
Confidence 358899999999999999998632 22221 222222111 1112 333 46799999999987666677889999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC--Ccee
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR--AVKY 157 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 157 (195)
+++|+|+++...-+... .+..+... ++| +++|+||+|+.+..... ...+++..+....+ ..++
T Consensus 78 ~lLVVda~eg~~~qT~e--hl~il~~l--gi~~iIVVlNKiDlv~~~~~~----------~v~~ei~~~l~~~~~~~~~i 143 (614)
T PRK10512 78 ALLVVACDDGVMAQTRE--HLAILQLT--GNPMLTVALTKADRVDEARIA----------EVRRQVKAVLREYGFAEAKL 143 (614)
T ss_pred EEEEEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEECCccCCHHHHH----------HHHHHHHHHHHhcCCCCCcE
Confidence 99999998743222221 22333332 455 57999999997532211 11234455554433 3689
Q ss_pred EEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 158 MECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 158 ~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+++||++|.|++++++.|.+.....
T Consensus 144 i~VSA~tG~gI~~L~~~L~~~~~~~ 168 (614)
T PRK10512 144 FVTAATEGRGIDALREHLLQLPERE 168 (614)
T ss_pred EEEeCCCCCCCHHHHHHHHHhhccc
Confidence 9999999999999999998765443
No 214
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.83 E-value=6.3e-20 Score=129.23 Aligned_cols=151 Identities=16% Similarity=0.105 Sum_probs=92.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC--CCCCc------------------------------ccceeeccceeEEeCCEEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS--FPGEY------------------------------VPTVFDNYSAPFTVDGIPVS 55 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~--~~~~~------------------------------~~t~~~~~~~~~~~~~~~~~ 55 (195)
||+++|.+|+|||||+++|+... ...+. ..++.+.....+..++. .
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~--~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKR--K 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCc--e
Confidence 68999999999999999997532 11000 11111111122223333 5
Q ss_pred EEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhc
Q psy10443 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQ 135 (195)
Q Consensus 56 l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~ 135 (195)
+.+|||||++.|.......++.+|++++|+|++++..-+... ....+... ...++++++||+|+........
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~--~~~~~~~~-~~~~iIvviNK~D~~~~~~~~~----- 150 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRR--HSYILSLL-GIRHVVVAVNKMDLVDYSEEVF----- 150 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHH--HHHHHHHc-CCCcEEEEEEchhcccCCHHHH-----
Confidence 669999999888665666788999999999998764322211 22222222 1245788899999864321000
Q ss_pred CCCCccHHHHHHHHHHcCC--ceeEEeccCCcccHHHH
Q psy10443 136 NLSPVKREQGQKLANKIRA--VKYMECSALTQRGLRQV 171 (195)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~ 171 (195)
.....+.+.+...++. .+++++||++|.|+.+.
T Consensus 151 ---~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 151 ---EEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred ---HHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 0112344555555552 45899999999998753
No 215
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.83 E-value=9.3e-20 Score=130.32 Aligned_cols=170 Identities=18% Similarity=0.122 Sum_probs=107.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC--CC----Ccccceee----------cc-ceeEEeCCEEEEEEEEeCCCCcccccc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF--PG----EYVPTVFD----------NY-SAPFTVDGIPVSLGLWDTAGQEDYDRL 70 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~--~~----~~~~t~~~----------~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~ 70 (195)
+|+++|..|+|||||+++|+...- .. ....+..+ .. .....+....+++++||+||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 689999999999999999976310 00 00001000 00 111222233456779999999999888
Q ss_pred CCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhh--hhhh-cC-----------
Q psy10443 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLN--LLSE-QN----------- 136 (195)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~--~~~~-~~----------- 136 (195)
+..+++.+|++++|+|+++....+. . .+...+... ++|+++++||+|+...+...- .... ..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~-~-~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~ 156 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQT-R-ILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL 156 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHH-H-HHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence 8889999999999999998654332 2 244455443 789999999999874321100 0000 00
Q ss_pred -------------------------------CCCccHHHHH----HHHHHcCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 137 -------------------------------LSPVKREQGQ----KLANKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 137 -------------------------------~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
-...+.+++. +-...-..+|++..||.++.|++.+++.+.+.++.
T Consensus 157 ~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~ 236 (237)
T cd04168 157 APNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFPT 236 (237)
T ss_pred eeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcCC
Confidence 0012222221 11222344788889999999999999999988764
No 216
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.82 E-value=4.9e-19 Score=125.53 Aligned_cols=164 Identities=18% Similarity=0.135 Sum_probs=97.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCccccee------------ecc---------c------------------eeEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVF------------DNY---------S------------------APFT 48 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~------------~~~---------~------------------~~~~ 48 (195)
||+++|+.++|||||+++|..+.+......... ... . ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997655321111100 000 0 0011
Q ss_pred eCCEEEEEEEEeCCCCccccccCCCCCC--CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 49 VDGIPVSLGLWDTAGQEDYDRLRPLSYP--QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 49 ~~~~~~~l~~~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
.. ...+.+.|+||++.|.......+. .+|++++|+|+.....-++. .++..+... ++|+++++||+|+....
T Consensus 81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~--~~l~~l~~~--~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTK--EHLGLALAL--NIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEECccccCHH
Confidence 11 245679999999988654444443 68999999999876443332 245555544 68999999999986543
Q ss_pred HhhhhhhhcC--CC----------CccHHHHHHHHH---HcCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 127 ETLNLLSEQN--LS----------PVKREQGQKLAN---KIRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 127 ~~~~~~~~~~--~~----------~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
.......... .. ..+.+++...+. ....+|+|.+|+.+|+|+++++..|..
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 3222111000 00 000001111111 112358999999999999999887643
No 217
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.82 E-value=9.8e-20 Score=124.04 Aligned_cols=154 Identities=15% Similarity=0.070 Sum_probs=95.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCCEEEEEEEEeCCCCccc----------cccCCCCC-
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDGIPVSLGLWDTAGQEDY----------DRLRPLSY- 75 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~~~D~~G~~~~----------~~~~~~~~- 75 (195)
.|+++|.+|+|||||++.+.+..+.....++...... .....++ .+.+||+||.... ......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 4899999999999999999965443333333322221 1122222 6779999995332 22222233
Q ss_pred --CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH-Hc
Q psy10443 76 --PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN-KI 152 (195)
Q Consensus 76 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 152 (195)
.+.+++++++|.++....... .....+... +.|+++++||+|+....... ..........+ ..
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~~~~----------~~~~~~~~~l~~~~ 143 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKSELA----------KALKEIKKELKLFE 143 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChHHHH----------HHHHHHHHHHHhcc
Confidence 346789999998765332221 122333332 58999999999986543211 11122222222 24
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
...+++++|++++.|++++++.|.+.
T Consensus 144 ~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 144 IDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHh
Confidence 44689999999999999999998875
No 218
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.82 E-value=1.6e-19 Score=117.21 Aligned_cols=136 Identities=23% Similarity=0.280 Sum_probs=96.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCC----ccccccCCCCCCCccEEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ----EDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~----~~~~~~~~~~~~~~d~~i~ 83 (195)
||+++|+.|+|||||+++|.+... .+..|... .+.+ .++||||. ..+..-......+||.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i------~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAI------EYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCcccee------Eecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 799999999999999999998643 22223211 1222 27899993 2233223334458999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|.|++++.+.-.-- +...+ +.|++=|+||+|+.... ...+..+++.+..|.-.+|++|+.
T Consensus 70 l~dat~~~~~~pP~--fa~~f-----~~pvIGVITK~Dl~~~~-------------~~i~~a~~~L~~aG~~~if~vS~~ 129 (143)
T PF10662_consen 70 LQDATEPRSVFPPG--FASMF-----NKPVIGVITKIDLPSDD-------------ANIERAKKWLKNAGVKEIFEVSAV 129 (143)
T ss_pred EecCCCCCccCCch--hhccc-----CCCEEEEEECccCccch-------------hhHHHHHHHHHHcCCCCeEEEECC
Confidence 99999875532211 22222 57999999999998432 334567778888887788999999
Q ss_pred CcccHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAV 176 (195)
Q Consensus 164 ~~~~v~~~~~~l~ 176 (195)
+|+|++++.+.|-
T Consensus 130 ~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 130 TGEGIEELKDYLE 142 (143)
T ss_pred CCcCHHHHHHHHh
Confidence 9999999998874
No 219
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.7e-19 Score=140.04 Aligned_cols=158 Identities=17% Similarity=0.193 Sum_probs=121.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC-CCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc------ccCCCC-C
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS-FPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD------RLRPLS-Y 75 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~------~~~~~~-~ 75 (195)
++..+|+++|+||||||||.|++++.. ..+++++.+.+..+..+...+..+. +.|+||-=... ...+.| +
T Consensus 1 ~~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~--ivDLPG~YSL~~~S~DE~Var~~ll 78 (653)
T COG0370 1 MKKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIE--IVDLPGTYSLTAYSEDEKVARDFLL 78 (653)
T ss_pred CCcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEE--EEeCCCcCCCCCCCchHHHHHHHHh
Confidence 356679999999999999999999964 3588888998888888888888766 99999942221 111222 2
Q ss_pred -CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 76 -PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 76 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
.++|++|-|+|++|-+....+. ++.++- +.|++++.|+.|..+.. -..-+..++.+.++
T Consensus 79 ~~~~D~ivnVvDAtnLeRnLylt---lQLlE~---g~p~ilaLNm~D~A~~~-------------Gi~ID~~~L~~~LG- 138 (653)
T COG0370 79 EGKPDLIVNVVDATNLERNLYLT---LQLLEL---GIPMILALNMIDEAKKR-------------GIRIDIEKLSKLLG- 138 (653)
T ss_pred cCCCCEEEEEcccchHHHHHHHH---HHHHHc---CCCeEEEeccHhhHHhc-------------CCcccHHHHHHHhC-
Confidence 3679999999999887654432 233332 78999999999987753 22345677888898
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+|++++||++|.|++++...+.+....+.
T Consensus 139 vPVv~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 139 VPVVPTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred CCEEEEEeecCCCHHHHHHHHHHhccccc
Confidence 89999999999999999999988665554
No 220
>PRK12736 elongation factor Tu; Reviewed
Probab=99.81 E-value=6.7e-19 Score=134.83 Aligned_cols=166 Identities=16% Similarity=0.161 Sum_probs=106.4
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCC-----------------CcccceeeccceeEEeCCEEEEEEEEeCCCCc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPG-----------------EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
.++.++|+++|..++|||||+++|++..... .....+.+. ....+......+.|+|+||++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHH
Confidence 3578999999999999999999998631100 001111111 112222233456799999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
+|.......+..+|++++|+|+++...-+... ++..+... ++| +++++||+|+....+... ...++
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~--~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~---------~i~~~ 153 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTRE--HILLARQV--GVPYLVVFLNKVDLVDDEELLE---------LVEME 153 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchhHHH--HHHHHHHc--CCCEEEEEEEecCCcchHHHHH---------HHHHH
Confidence 88766666677899999999998753333222 33344433 678 678899999874322111 11234
Q ss_pred HHHHHHHcC----CceeEEeccCCcc--------cHHHHHHHHHHHHcCCC
Q psy10443 145 GQKLANKIR----AVKYMECSALTQR--------GLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 145 ~~~~~~~~~----~~~~~~~Sa~~~~--------~v~~~~~~l~~~~~~~~ 183 (195)
+..+....+ .++++++||++|. ++.++++.+.+.+..+.
T Consensus 154 i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~ 204 (394)
T PRK12736 154 VRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPE 204 (394)
T ss_pred HHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCC
Confidence 555555554 2689999999983 67888888888776443
No 221
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.81 E-value=3.6e-19 Score=124.39 Aligned_cols=172 Identities=13% Similarity=0.146 Sum_probs=99.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceee-ccc-eeEEeC-CEEEEEEEEeCCCCccccccC-----CCCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFD-NYS-APFTVD-GIPVSLGLWDTAGQEDYDRLR-----PLSYPQ 77 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~-~~~-~~~~~~-~~~~~l~~~D~~G~~~~~~~~-----~~~~~~ 77 (195)
++||+++|.+|+|||||+|.|++.........+... ... ....+. +....+.+||+||........ ...+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 579999999999999999999986543322212111 001 000111 112256799999965432221 223667
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH----HHHHHHH--
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ----GQKLANK-- 151 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-- 151 (195)
+|+++++.+ .++......|+..+... +.|+++|+||+|+..+.+......... +....++ .......
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~-~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFN-REQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhcccccccc-HHHHHHHHHHHHHHHHHHcC
Confidence 899888844 22334444567777665 689999999999965432110000000 0000111 1222222
Q ss_pred cCCceeEEeccC--CcccHHHHHHHHHHHHcCCCc
Q psy10443 152 IRAVKYMECSAL--TQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 152 ~~~~~~~~~Sa~--~~~~v~~~~~~l~~~~~~~~~ 184 (195)
....++|.+|+. .+.|+..+.+.+...+.+.+.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 223568999998 578999999999988876543
No 222
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.81 E-value=6.6e-19 Score=124.31 Aligned_cols=169 Identities=16% Similarity=0.264 Sum_probs=106.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcc---cceeeccceeEEeCCEEEEEEEEeCCCCcccccc-----CCCCCCCcc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYV---PTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL-----RPLSYPQTD 79 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~-----~~~~~~~~d 79 (195)
||+++|.++|||||+.+.++++..+.+.. +|....... .-....+.+++||+||+..+... ....+++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~--v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSH--VRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEE--EECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEE--EecCCCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence 79999999999999999999865443322 222222111 11223457789999999766433 345678999
Q ss_pred EEEEEEeCCChhcHHHHHH--hhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC--Cc
Q psy10443 80 VFLICYSVVSPSSFDNVTS--KWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR--AV 155 (195)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~--~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 155 (195)
++|+|+|+.+.+-.+++.. ..+..+...+|+..+.++++|+|+..++......... .+.+.+.+...+ .+
T Consensus 79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~------~~~i~~~~~~~~~~~~ 152 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDI------QQRIRDELEDLGIEDI 152 (232)
T ss_dssp EEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHH------HHHHHHHHHHTT-TSE
T ss_pred EEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHH------HHHHHHHhhhccccce
Confidence 9999999985543333331 2455566678999999999999998876654432221 122333333333 36
Q ss_pred eeEEeccCCcccHHHHHHHHHHHHcCCCcc
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~ 185 (195)
.++.||..+ +.+-++|..+++.+.+..+.
T Consensus 153 ~~~~TSI~D-~Sly~A~S~Ivq~LiP~~~~ 181 (232)
T PF04670_consen 153 TFFLTSIWD-ESLYEAWSKIVQKLIPNLST 181 (232)
T ss_dssp EEEEE-TTS-THHHHHHHHHHHTTSTTHCC
T ss_pred EEEeccCcC-cHHHHHHHHHHHHHcccHHH
Confidence 788899887 58999999999998866543
No 223
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.81 E-value=8.3e-19 Score=134.45 Aligned_cols=149 Identities=17% Similarity=0.114 Sum_probs=94.6
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCC-------C-----CC-----CcccceeeccceeEEeCCEEEEEEEEeCCCCc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDS-------F-----PG-----EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~-------~-----~~-----~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
.++.++|+++|..++|||||+++|++.. + .. .....+.+. ....+......+.|||+||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchH
Confidence 3578999999999999999999997420 0 00 001111111 122333344567799999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEE-EEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPII-LVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~v-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
+|..........+|++++|+|+++....+... ++..+... ++|.+ +++||+|+........ ...++
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e--~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~---------~~~~~ 153 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQTRE--HILLARQV--GVPYIVVFLNKCDMVDDEELLE---------LVEME 153 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCEEEEEEEecccCCHHHHHH---------HHHHH
Confidence 88765555667889999999998743333222 33333333 67765 6899999875432111 12235
Q ss_pred HHHHHHHcCC----ceeEEeccCCcc
Q psy10443 145 GQKLANKIRA----VKYMECSALTQR 166 (195)
Q Consensus 145 ~~~~~~~~~~----~~~~~~Sa~~~~ 166 (195)
+..+...++. ++++++||.+|.
T Consensus 154 i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 154 VRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHhcCCCccCccEEECcccccc
Confidence 6666666543 689999999874
No 224
>KOG1423|consensus
Probab=99.81 E-value=4.9e-19 Score=126.21 Aligned_cols=174 Identities=16% Similarity=0.127 Sum_probs=107.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCC--CcccceeeccceeEEeCCEEEEEEEEeCCCCcccc------------c
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPG--EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD------------R 69 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~------------~ 69 (195)
.+.+.|+|+|.||+|||||.|.+.+..... .-..|+.....+.++-+. ..+.|+||||--.-. +
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e--TQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE--TQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc--eEEEEecCCcccccchhhhHHHHHHhhh
Confidence 567899999999999999999999976532 333444555555555554 455699999932111 1
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhh-hhhcCCCCccH--HHH-
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNL-LSEQNLSPVKR--EQG- 145 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~-~~~~~~~~~~~--~~~- 145 (195)
-....+..||.+++|+|+++.....+.. .+..+.. ..++|-+++.||.|........-. ...+....+.. .++
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~-ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEE-YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHH-HhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 1223456799999999999744433221 2233322 247899999999998754432111 11122222221 111
Q ss_pred HHHHHHc------------CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 146 QKLANKI------------RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 146 ~~~~~~~------------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
+.|...- ..-.+|.+||++|+|++++-++|+..+...
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 1111110 012378999999999999999998876544
No 225
>KOG0462|consensus
Probab=99.81 E-value=6e-19 Score=134.30 Aligned_cols=172 Identities=19% Similarity=0.191 Sum_probs=124.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC--CCC--------------Cccc-ceeeccceeEEeCCEEEEEEEEeCCCCccccc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS--FPG--------------EYVP-TVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~--~~~--------------~~~~-t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~ 69 (195)
-|+.|+-+-..|||||..+|+... ... ...+ |........+..++..+.++++|||||.+|..
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 478999999999999999987631 110 0111 11111111222357889999999999999999
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA 149 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (195)
.....+..|+|+|+|+|++...-.+...+.|+. +.. ++.++.|+||+|+..++... + ..+..++.
T Consensus 141 EVsRslaac~G~lLvVDA~qGvqAQT~anf~lA-fe~---~L~iIpVlNKIDlp~adpe~----------V-~~q~~~lF 205 (650)
T KOG0462|consen 141 EVSRSLAACDGALLVVDASQGVQAQTVANFYLA-FEA---GLAIIPVLNKIDLPSADPER----------V-ENQLFELF 205 (650)
T ss_pred eehehhhhcCceEEEEEcCcCchHHHHHHHHHH-HHc---CCeEEEeeeccCCCCCCHHH----------H-HHHHHHHh
Confidence 999999999999999999988777777664433 332 78999999999998875311 1 11222222
Q ss_pred HHcCCceeEEeccCCcccHHHHHHHHHHHHcCCCccccCCCceee
Q psy10443 150 NKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVKRRQRKCVI 194 (195)
Q Consensus 150 ~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~~~~~c~~ 194 (195)
.. ..-+++.+||++|.|+++++++|++.++.+.-...+.-+|++
T Consensus 206 ~~-~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~plr~Li 249 (650)
T KOG0462|consen 206 DI-PPAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDAPLRMLI 249 (650)
T ss_pred cC-CccceEEEEeccCccHHHHHHHHHhhCCCCCCCCCcchHHHh
Confidence 22 224789999999999999999999999999887776666655
No 226
>PRK12735 elongation factor Tu; Reviewed
Probab=99.81 E-value=1.7e-18 Score=132.70 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=104.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC-------CC--CC--------cccceeeccceeEEeCCEEEEEEEEeCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS-------FP--GE--------YVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~-------~~--~~--------~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~ 66 (195)
++.++|+++|.+++|||||+++|++.. +. .. ....+.+. ....+......+.|+|+||++.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCCHHH
Confidence 568999999999999999999998621 00 00 00111111 1112222234566999999988
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEE-EEeeCCCcccchHhhhhhhhcCCCCccHHHH
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPII-LVGTKIDLREDRETLNLLSEQNLSPVKREQG 145 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~v-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (195)
|.......+..+|++++|+|+.+....+.. . ++..+... ++|.+ +++||+|+........ ...+++
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~-e-~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~---------~~~~ei 154 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQTR-E-HILLARQV--GVPYIVVFLNKCDMVDDEELLE---------LVEMEV 154 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchhHH-H-HHHHHHHc--CCCeEEEEEEecCCcchHHHHH---------HHHHHH
Confidence 866666777899999999999875333322 1 33334332 67865 5799999974321111 122345
Q ss_pred HHHHHHcC----CceeEEeccCCcc----------cHHHHHHHHHHHHcCC
Q psy10443 146 QKLANKIR----AVKYMECSALTQR----------GLRQVFDEAVRAVLRP 182 (195)
Q Consensus 146 ~~~~~~~~----~~~~~~~Sa~~~~----------~v~~~~~~l~~~~~~~ 182 (195)
..+...++ .++++++||.+|. ++.++++.|.+.+..+
T Consensus 155 ~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p 205 (396)
T PRK12735 155 RELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEP 205 (396)
T ss_pred HHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCC
Confidence 55665553 2689999999984 6788888888776543
No 227
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.80 E-value=3.9e-19 Score=126.16 Aligned_cols=152 Identities=15% Similarity=0.081 Sum_probs=90.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC--CCCC--------------C----------------cccceeeccceeEEeCCEEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD--SFPG--------------E----------------YVPTVFDNYSAPFTVDGIPVS 55 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~--~~~~--------------~----------------~~~t~~~~~~~~~~~~~~~~~ 55 (195)
+|+++|..++|||||+.+|+.. .... . ...++.+.....+..++ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 5899999999999999998642 1100 0 00111111112233333 56
Q ss_pred EEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhc-----H-HHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhh
Q psy10443 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSS-----F-DNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETL 129 (195)
Q Consensus 56 l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-----~-~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~ 129 (195)
+.+||+||+..|...+...+..+|++++|+|+++... . ......+ .... .....|+++++||+|+.......
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLAR-TLGVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHH-HcCCCeEEEEEEccccccccccH
Confidence 7799999998877666667788999999999998521 1 1111112 2222 22236899999999997421000
Q ss_pred hhhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHH
Q psy10443 130 NLLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLR 169 (195)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~ 169 (195)
... ....+++..+....+ .++++++||++|.|++
T Consensus 157 ~~~------~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERY------DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHH------HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 000 011123333344443 2679999999999986
No 228
>CHL00071 tufA elongation factor Tu
Probab=99.79 E-value=3.1e-18 Score=131.78 Aligned_cols=150 Identities=17% Similarity=0.126 Sum_probs=95.5
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCC--C---------------CcccceeeccceeEEeCCEEEEEEEEeCCCCc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFP--G---------------EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~---------------~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
.++.++|+++|.+++|||||+++|++.... . ....++.+... ..+......+.|.|+||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~--~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAH--VEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccE--EEEccCCeEEEEEECCChH
Confidence 467899999999999999999999864110 0 00111111111 1222223455699999998
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
.|.......+..+|++++|+|+.....-+... ++..+... ++| +++++||+|+........ ...++
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~--~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~---------~~~~~ 153 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTKE--HILLAKQV--GVPNIVVFLNKEDQVDDEELLE---------LVELE 153 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCEEEEEEEccCCCCHHHHHH---------HHHHH
Confidence 88666666778999999999998654333222 33344433 678 678899999975432111 12234
Q ss_pred HHHHHHHcC----CceeEEeccCCccc
Q psy10443 145 GQKLANKIR----AVKYMECSALTQRG 167 (195)
Q Consensus 145 ~~~~~~~~~----~~~~~~~Sa~~~~~ 167 (195)
+..+....+ .++++.+||.+|.+
T Consensus 154 l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 154 VRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHhCCCCCcceEEEcchhhccc
Confidence 555555544 27899999998863
No 229
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=3e-18 Score=116.16 Aligned_cols=160 Identities=18% Similarity=0.148 Sum_probs=104.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccce-eEEeCCEEEEEEEEeCCC----------CccccccCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSA-PFTVDGIPVSLGLWDTAG----------QEDYDRLRPL 73 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~~~D~~G----------~~~~~~~~~~ 73 (195)
....|+++|.+|||||||+|.|++..-......|.+.+... -+.+++. +.+.|.|| ++.+..+...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 34689999999999999999999965322333344333332 2344443 55999999 3333444445
Q ss_pred CCC---CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 74 SYP---QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 74 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
|++ +..++++++|+..+-...+. ..++.+... ++|+++++||+|.....+.... .....+.+..
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k~---------l~~v~~~l~~ 166 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKSERNKQ---------LNKVAEELKK 166 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChhHHHHH---------HHHHHHHhcC
Confidence 554 35788999998876554444 366666665 8999999999999886542110 0111111111
Q ss_pred HcCCce--eEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 151 KIRAVK--YMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 151 ~~~~~~--~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
... .. ++.+|+..+.|++++...|.+.+..
T Consensus 167 ~~~-~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 167 PPP-DDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCC-ccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 122 22 7889999999999999999887654
No 230
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.77 E-value=2.6e-18 Score=121.33 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=77.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC--CCCCcccce------------eecc---ceeEEeC--------CEEEEEEEEeCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTV------------FDNY---SAPFTVD--------GIPVSLGLWDTA 62 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~------------~~~~---~~~~~~~--------~~~~~l~~~D~~ 62 (195)
+|+++|..++|||||+.+|+... .......+. +... .....+. +..+.+++||+|
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 79999999999999999997532 111100000 0000 0112222 447889999999
Q ss_pred CCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
|+..|......+++.+|++++|+|+++....+... .+.. ... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~-~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET-VLRQ-ALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH-HHHH-HHH--cCCCEEEEEECCCcc
Confidence 99999988888999999999999999876655432 1322 222 268999999999985
No 231
>PRK00049 elongation factor Tu; Reviewed
Probab=99.77 E-value=2e-17 Score=126.79 Aligned_cols=164 Identities=17% Similarity=0.142 Sum_probs=103.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC---CC--------------cccceeeccceeEEeCCEEEEEEEEeCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP---GE--------------YVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~---~~--------------~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~ 66 (195)
++.++|+++|..++|||||+++|++.... .. ....+.+. ....+......+.|.|+||+.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINT--AHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEee--eEEEEcCCCeEEEEEECCCHHH
Confidence 57899999999999999999999863110 00 01111111 1122222234566999999988
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEE-EEeeCCCcccchHhhhhhhhcCCCCccHHHH
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPII-LVGTKIDLREDRETLNLLSEQNLSPVKREQG 145 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~v-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (195)
|.......+..+|++++|+|+.+...-+... ++..+... ++|.+ +++||+|+........ ....++
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~--~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~---------~~~~~i 154 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQTRE--HILLARQV--GVPYIVVFLNKCDMVDDEELLE---------LVEMEV 154 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHHHH--HHHHHHHc--CCCEEEEEEeecCCcchHHHHH---------HHHHHH
Confidence 8766667788999999999998754333222 33444443 67876 5799999975322111 112234
Q ss_pred HHHHHHcC----CceeEEeccCCcc----------cHHHHHHHHHHHHcCC
Q psy10443 146 QKLANKIR----AVKYMECSALTQR----------GLRQVFDEAVRAVLRP 182 (195)
Q Consensus 146 ~~~~~~~~----~~~~~~~Sa~~~~----------~v~~~~~~l~~~~~~~ 182 (195)
..+....+ .++++.+||+++. ++..+++.|.+.+..+
T Consensus 155 ~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p 205 (396)
T PRK00049 155 RELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTP 205 (396)
T ss_pred HHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCC
Confidence 44444432 2689999999875 5677777777765433
No 232
>KOG0077|consensus
Probab=99.76 E-value=1.7e-19 Score=117.25 Aligned_cols=163 Identities=20% Similarity=0.299 Sum_probs=116.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.|.=|++++|..|+|||||++.|.+... .++.||.-.. +....+.+- +++-+|++||...+..|..|+..+|++++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPT-SE~l~Ig~m--~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPT-SEELSIGGM--TFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCC-hHHheecCc--eEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 3567999999999999999999998765 5566665333 334456664 55599999999999999999999999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc----------
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI---------- 152 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 152 (195)
.+|+-|.+.+.+...++...+... ..++|+++.+||+|...+....+...- ....+++-..
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~--------l~l~~~t~~~~~v~~~~~~~ 165 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFH--------LGLSNFTTGKGKVNLTDSNV 165 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHH--------HHHHHHhcccccccccCCCC
Confidence 999999999998876555555543 478999999999999776422111000 0011111111
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
..+.++.||...+.|.-+.|.|+.+.
T Consensus 166 rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 166 RPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CeEEEEEEEEEccCccceeeeehhhh
Confidence 11346778888888877777776654
No 233
>PLN03127 Elongation factor Tu; Provisional
Probab=99.76 E-value=4e-17 Score=126.32 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=100.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC------CCC-----------CCcccceeeccceeEEeCCEEEEEEEEeCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD------SFP-----------GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~------~~~-----------~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~ 66 (195)
++.++|+++|..++|||||+++|.+. ... +.....+.+. ....+......+.|.|+||+..
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCccc
Confidence 56799999999999999999999732 100 0001111111 1122323334566999999988
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHH
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQG 145 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (195)
|.......+..+|++++|+|+++....+... .+..+... ++| +++++||+|+........ ...++.
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt~e--~l~~~~~~--gip~iIvviNKiDlv~~~~~~~---------~i~~~i 203 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQTKE--HILLARQV--GVPSLVVFLNKVDVVDDEELLE---------LVEMEL 203 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhHHH--HHHHHHHc--CCCeEEEEEEeeccCCHHHHHH---------HHHHHH
Confidence 7655555666899999999998754333322 33344433 678 468899999975322111 111233
Q ss_pred HHHHHHcC----CceeEEeccC---Cccc-------HHHHHHHHHHHHcCCC
Q psy10443 146 QKLANKIR----AVKYMECSAL---TQRG-------LRQVFDEAVRAVLRPE 183 (195)
Q Consensus 146 ~~~~~~~~----~~~~~~~Sa~---~~~~-------v~~~~~~l~~~~~~~~ 183 (195)
..+...++ .++++.+|+. +|.| +.++++.|.+.+..+.
T Consensus 204 ~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~ 255 (447)
T PLN03127 204 RELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPV 255 (447)
T ss_pred HHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCC
Confidence 33333322 2678888876 4444 6788888877765443
No 234
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=1.7e-17 Score=124.74 Aligned_cols=172 Identities=19% Similarity=0.199 Sum_probs=124.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCC--CCC--------------Ccccceeeccce--eEEe-CCEEEEEEEEeCCCCcc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDS--FPG--------------EYVPTVFDNYSA--PFTV-DGIPVSLGLWDTAGQED 66 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~--~~~--------------~~~~t~~~~~~~--~~~~-~~~~~~l~~~D~~G~~~ 66 (195)
--|..++-+-..|||||..|+.... +.. ...+.+...... .+.. +|..|.++++|||||-.
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD 88 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 88 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence 3477888899999999999987631 110 011111111111 2222 56889999999999999
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ 146 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (195)
|.......+..|.|+++|+|++..-..+.+.+ ....+.. ++-++-|+||+|+..++.. .-.+
T Consensus 89 FsYEVSRSLAACEGalLvVDAsQGveAQTlAN-~YlAle~---~LeIiPViNKIDLP~Adpe--------------rvk~ 150 (603)
T COG0481 89 FSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLALEN---NLEIIPVLNKIDLPAADPE--------------RVKQ 150 (603)
T ss_pred eEEEehhhHhhCCCcEEEEECccchHHHHHHH-HHHHHHc---CcEEEEeeecccCCCCCHH--------------HHHH
Confidence 99888899999999999999998877777776 3344443 6888999999999876531 1122
Q ss_pred HHHHH--cCCceeEEeccCCcccHHHHHHHHHHHHcCCCccccCCCceeeC
Q psy10443 147 KLANK--IRAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVKRRQRKCVII 195 (195)
Q Consensus 147 ~~~~~--~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~~~~~c~~~ 195 (195)
+...- +..-..+.+|||+|.|++++++.|++.++.++.......+++|+
T Consensus 151 eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pLkALif 201 (603)
T COG0481 151 EIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPLKALIF 201 (603)
T ss_pred HHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCcceEEEE
Confidence 22222 23345789999999999999999999999999877777777764
No 235
>KOG1489|consensus
Probab=99.76 E-value=4.8e-17 Score=116.67 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=111.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc----cCCCC---CCCcc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR----LRPLS---YPQTD 79 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~----~~~~~---~~~~d 79 (195)
.|-++|.||+|||||++.++.... ...|..|+....-..+.+++.. .+.+-|+||--+-.+ +-..| ++.++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 578999999999999999998643 4677888766555566666554 266999999543322 22223 45789
Q ss_pred EEEEEEeCCCh---hcHHHHHHhhHHHHhh---hCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 80 VFLICYSVVSP---SSFDNVTSKWYPELKH---HCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 80 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~---~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
.++||+|++.. ..++.... +...+.. ...+.|.++|+||+|+.+.. .....++.+.+.
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~l-L~~ELe~yek~L~~rp~liVaNKiD~~eae---------------~~~l~~L~~~lq 340 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQL-LIEELELYEKGLADRPALIVANKIDLPEAE---------------KNLLSSLAKRLQ 340 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHH-HHHHHHHHhhhhccCceEEEEeccCchhHH---------------HHHHHHHHHHcC
Confidence 99999999988 66666653 3333332 34578999999999986432 122466777777
Q ss_pred CceeEEeccCCcccHHHHHHHHHHH
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
...++++||++++|+.++++.|.+.
T Consensus 341 ~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 341 NPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred CCcEEEeeeccccchHHHHHHHhhc
Confidence 5558999999999999999988754
No 236
>PLN03126 Elongation factor Tu; Provisional
Probab=99.75 E-value=3.5e-17 Score=127.30 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=94.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC------CCCCc-----------ccceeeccceeEEeCCEEEEEEEEeCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS------FPGEY-----------VPTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~------~~~~~-----------~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~ 66 (195)
++.++|+++|..++|||||+++|+... ....+ ...+.+.....+..++ ..+.++|+||++.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~~ 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHHH
Confidence 567899999999999999999998521 11100 0011111111122233 4567999999999
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHH
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQG 145 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (195)
|.......+..+|++++|+|+.+....+... ++..+... ++| +++++||+|+.......+ ...+++
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~e--~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~---------~i~~~i 223 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQTKE--HILLAKQV--GVPNMVVFLNKQDQVDDEELLE---------LVELEV 223 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHH--HHHHHHHc--CCCeEEEEEecccccCHHHHHH---------HHHHHH
Confidence 8766666777899999999998764443322 33444433 677 778899999975332111 112345
Q ss_pred HHHHHHc----CCceeEEeccCCccc
Q psy10443 146 QKLANKI----RAVKYMECSALTQRG 167 (195)
Q Consensus 146 ~~~~~~~----~~~~~~~~Sa~~~~~ 167 (195)
..+.... ..++++.+|+.++.+
T Consensus 224 ~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 224 RELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHhcCCCcCcceEEEEEcccccc
Confidence 5555543 237899999988753
No 237
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.75 E-value=2.9e-17 Score=129.26 Aligned_cols=118 Identities=16% Similarity=0.176 Sum_probs=77.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc--CCCC--C-------------Ccccce---eecc-ceeEEeCCEEEEEEEEeCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT--DSFP--G-------------EYVPTV---FDNY-SAPFTVDGIPVSLGLWDTAG 63 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~--~~~~--~-------------~~~~t~---~~~~-~~~~~~~~~~~~l~~~D~~G 63 (195)
+..+|+++|.+++|||||.++|+. +... + .+.+.. +..+ .....+....+.+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 456999999999999999999964 2111 0 000000 0001 11122233346677999999
Q ss_pred CccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
+..|......+++.+|++|+|+|+++....+. . .+....... ++|+++++||+|+....
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t-~-~l~~~~~~~--~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT-R-KLMEVCRLR--DTPIFTFINKLDRDGRE 147 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCHHH-H-HHHHHHHhc--CCCEEEEEECCcccccC
Confidence 99988777778899999999999987543221 2 233444333 79999999999986533
No 238
>PRK13351 elongation factor G; Reviewed
Probab=99.75 E-value=1.4e-17 Score=135.89 Aligned_cols=118 Identities=17% Similarity=0.140 Sum_probs=80.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CC------C-----Ccccc---eeecc-ceeEEeCCEEEEEEEEeCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FP------G-----EYVPT---VFDNY-SAPFTVDGIPVSLGLWDTAGQED 66 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~------~-----~~~~t---~~~~~-~~~~~~~~~~~~l~~~D~~G~~~ 66 (195)
.+..||+|+|..|+|||||+++|+... .. . .+.+. ..... .....+....+.+++||+||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 355799999999999999999997531 00 0 00000 00000 01112222346778999999999
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
|...+..+++.+|++++|+|+++....+... .| ..+... ++|+++++||+|+...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~-~~~~~~--~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTET-VW-RQADRY--GIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HH-HHHHhc--CCCEEEEEECCCCCCC
Confidence 8888888999999999999999876655443 24 333333 7899999999998754
No 239
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.74 E-value=2.6e-17 Score=119.67 Aligned_cols=115 Identities=16% Similarity=0.152 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC--CCCCC--------cccceee--------cc---ceeEEeCCEEEEEEEEeCCCCc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD--SFPGE--------YVPTVFD--------NY---SAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~--~~~~~--------~~~t~~~--------~~---~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
-+|+++|.+|+|||||+++|+.. ..... ...+..+ .. .....+....+.+++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 47999999999999999999752 11100 0001111 00 1122334445677899999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
+|......+++.+|++|+|+|+++...... . .+...... .++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~-~-~i~~~~~~--~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT-R-KLFEVCRL--RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHH-H-HHHHHHHh--cCCCEEEEEECCccCCC
Confidence 887766777889999999999987543222 1 23344433 37899999999998654
No 240
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.73 E-value=6.1e-17 Score=126.38 Aligned_cols=157 Identities=14% Similarity=0.088 Sum_probs=93.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCCc----------cccee-----------------ecccee---EEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGEY----------VPTVF-----------------DNYSAP---FTVDG 51 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~----------~~t~~-----------------~~~~~~---~~~~~ 51 (195)
+..++|+++|..++|||||+++|+... ...+. ..++. ...+.. ..+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 567999999999999999999987632 11100 01100 000000 11122
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhh
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNL 131 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~ 131 (195)
....+.|+|+||++.|.......+..+|++++|+|++....-+... ++ ..+... ...|+++++||+|+...+....
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~-~~-~l~~~l-g~~~iIvvvNKiD~~~~~~~~~- 180 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRR-HS-FIATLL-GIKHLVVAVNKMDLVDYSEEVF- 180 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchH-HH-HHHHHh-CCCceEEEEEeeccccchhHHH-
Confidence 2345679999999988655555578999999999998653222211 11 122221 1247899999999975321100
Q ss_pred hhhcCCCCccHHHHHHHHHHcC---CceeEEeccCCcccHHHH
Q psy10443 132 LSEQNLSPVKREQGQKLANKIR---AVKYMECSALTQRGLRQV 171 (195)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~ 171 (195)
....++...+....+ ..+++++||++|+|+.++
T Consensus 181 -------~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 181 -------ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred -------HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 011122333333332 368999999999998764
No 241
>KOG3905|consensus
Probab=99.73 E-value=4e-17 Score=117.49 Aligned_cols=170 Identities=16% Similarity=0.197 Sum_probs=125.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc---eeEEeCCEEEEEEEEeCCCCccccccCCCCCCCc----
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS---APFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQT---- 78 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~---- 78 (195)
.-+|+|+|+.++|||||+.+|.+..-. .+..+..+. ..-...+...++.+|-+.|......+....+...
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e~~---KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSETV---KKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccccc---CCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 458999999999999999999986422 222222221 1122234457888999999876666655555432
Q ss_pred cEEEEEEeCCChhcHHHHHHhhHHHHhhhCC-------------------------------------------------
Q psy10443 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHCP------------------------------------------------- 109 (195)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~------------------------------------------------- 109 (195)
..+|++.|+++|+.+.+..++|...++++..
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 5788999999998887777778555443211
Q ss_pred -------------CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHH
Q psy10443 110 -------------DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAV 176 (195)
Q Consensus 110 -------------~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 176 (195)
++|++||++|||.....+.+..+.+.+...+ ...++.||..++ ...+.+|+++..|++-+...|.
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfi-q~~lRkFCLr~G-aaLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFI-QSHLRKFCLRYG-AALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHH-HHHHHHHHHHcC-ceeEEeecccccchHHHHHHHH
Confidence 4799999999999887777777666665444 356889999999 5799999999999999999999
Q ss_pred HHHc
Q psy10443 177 RAVL 180 (195)
Q Consensus 177 ~~~~ 180 (195)
..++
T Consensus 287 hr~y 290 (473)
T KOG3905|consen 287 HRSY 290 (473)
T ss_pred HHhc
Confidence 8876
No 242
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.73 E-value=9.3e-17 Score=117.39 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=75.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCc-----ccce-ee--------c-----cceeEEeCCEEEEEEEEeCCCCcccc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEY-----VPTV-FD--------N-----YSAPFTVDGIPVSLGLWDTAGQEDYD 68 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~-----~~t~-~~--------~-----~~~~~~~~~~~~~l~~~D~~G~~~~~ 68 (195)
+|+++|.+|+|||||+++++........ ..++ .+ . ....+..++ +.+.+||+||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 5899999999999999998753211000 0010 00 0 011222333 567799999998887
Q ss_pred ccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 69 RLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
..+..+++.+|++++|+|+++........ .|. .+... ++|.++++||+|....
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~~-~~~~~--~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEK-LWE-FADEA--GIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHH-HHHHc--CCCEEEEEECCccCCC
Confidence 77778889999999999999875554332 232 33332 7899999999998754
No 243
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.73 E-value=1.4e-16 Score=116.31 Aligned_cols=144 Identities=17% Similarity=0.167 Sum_probs=90.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCC----------ccccee-eccceeEEeCCEEEEEEEEeCCCCccc------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGE----------YVPTVF-DNYSAPFTVDGIPVSLGLWDTAGQEDY------ 67 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~----------~~~t~~-~~~~~~~~~~~~~~~l~~~D~~G~~~~------ 67 (195)
-.++|+++|.+|+|||||+++|++..+... ..+|.. ......+..++..+.+.+|||||-..+
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999999765432 233332 222344556788889999999993322
Q ss_pred --------------------cccCCCCCC--CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 68 --------------------DRLRPLSYP--QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 68 --------------------~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
...+...+. .+|+++++++.+.. .+....-.++..+.. ++|+++|+||+|+...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~~---~v~vi~VinK~D~l~~ 158 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLSK---RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHhc---cCCEEEEEECCCcCCH
Confidence 111213344 46778888887642 222211124444443 6899999999999764
Q ss_pred hHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 126 RETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
.+.. ...+.+.+....++ ++++.....
T Consensus 159 ~e~~----------~~k~~i~~~l~~~~-i~~~~~~~~ 185 (276)
T cd01850 159 EELK----------EFKQRIMEDIEEHN-IKIYKFPED 185 (276)
T ss_pred HHHH----------HHHHHHHHHHHHcC-CceECCCCC
Confidence 4311 22344556666666 667665543
No 244
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=1.3e-17 Score=117.71 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=111.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCc-cc-ceeeccceeEEeCCEEEEEEEEeCCCCcc-------ccccCCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEY-VP-TVFDNYSAPFTVDGIPVSLGLWDTAGQED-------YDRLRPLS 74 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~-~~-t~~~~~~~~~~~~~~~~~l~~~D~~G~~~-------~~~~~~~~ 74 (195)
..+++|+++|..|+||||+||.|+++...+-. .+ ++.........++++. +.+||+||-++ ++.....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~--l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGEN--LVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccc--eEEecCCCcccchhhhHHHHHHHHHH
Confidence 57899999999999999999999976442211 11 1112212233455554 45999999544 56667778
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch-Hhhhh--hhhcCCCCccHH---HHHHH
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR-ETLNL--LSEQNLSPVKRE---QGQKL 148 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~-~~~~~--~~~~~~~~~~~~---~~~~~ 148 (195)
+...|.+++++++.|+.--.+.. +...+....-+.|+++++|++|...+. ++... ......+....+ ...++
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~--f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDED--FLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhhccEEEEeccCCCccccCCHH--HHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999875544433 334444443458999999999987663 00000 000000111111 22334
Q ss_pred HHHcCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 149 ANKIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 149 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
++. ..|++..|.+.+.|++.+...++..+....
T Consensus 193 ~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~e~ 225 (296)
T COG3596 193 FQE--VKPVVAVSGRLPWGLKELVRALITALPVEA 225 (296)
T ss_pred Hhh--cCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence 444 257888899999999999999999887443
No 245
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.73 E-value=7.6e-17 Score=124.93 Aligned_cols=159 Identities=12% Similarity=0.092 Sum_probs=95.5
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcC--CCCCC------------------------cccce-eeccc---eeEEeCCE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTD--SFPGE------------------------YVPTV-FDNYS---APFTVDGI 52 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~~------------------------~~~t~-~~~~~---~~~~~~~~ 52 (195)
+++.++|+++|+.++|||||+.+|+.. ..... ..+.. ....+ ....+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 467899999999999999999998762 11100 00000 00000 11122333
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhc---H---HHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccc
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSS---F---DNVTSKWYPELKHHCPDAP-IILVGTKIDLRED 125 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~ 125 (195)
...+.|+|+|||.+|.......+..+|++++|+|+++..- + ....++|. .+... ++| +++++||+|....
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~~--gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFTL--GVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHHc--CCCeEEEEEEccccccc
Confidence 4567799999999998777778889999999999986531 0 12222232 33332 666 6789999995321
Q ss_pred hHhhhhhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHHH
Q psy10443 126 RETLNLLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLRQ 170 (195)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~ 170 (195)
.-.+.. .....+++..+....+ .++++++|+.+|+|+.+
T Consensus 161 ~~~~~~------~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQER------YDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHH------HHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 100000 0011233444444333 27899999999999864
No 246
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.73 E-value=5.4e-18 Score=114.84 Aligned_cols=120 Identities=16% Similarity=0.196 Sum_probs=73.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEe-CCEEEEEEEEeCCCCccccccCCC---CCCCccE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTV-DGIPVSLGLWDTAGQEDYDRLRPL---SYPQTDV 80 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~---~~~~~d~ 80 (195)
+.-.|+++|+.|+|||+|..+|..+.......+. ..+.. ..+ ....-.+.++|+|||++.+..... +..++.+
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~--~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA--YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE--CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce--EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 3457899999999999999999998543322222 22221 111 122334569999999998764433 4778999
Q ss_pred EEEEEeCCC-hhcHHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcccchH
Q psy10443 81 FLICYSVVS-PSSFDNVTSKWYPELKHH---CPDAPIILVGTKIDLREDRE 127 (195)
Q Consensus 81 ~i~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~ 127 (195)
+|||+|++. +..+.+..++++..+... ...+|++|++||+|+.....
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 999999974 455666666566655543 35799999999999976543
No 247
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.3e-16 Score=122.04 Aligned_cols=165 Identities=17% Similarity=0.171 Sum_probs=108.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeC-CEEEEEEEEeCCCCccccccCCCCCCCccEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVD-GIPVSLGLWDTAGQEDYDRLRPLSYPQTDVF 81 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~ 81 (195)
.++.=|+++|+-..|||||+..+-+.........-..... .+.+..+ +..-.+.|.|||||+.|..++..-..-+|.+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 4567799999999999999999988765432222222222 2223332 1223556999999999999999999999999
Q ss_pred EEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 82 LICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+|+++.|.---+..+ -+..++. .++|+++++||+|..+.++.... .++...-+.. +.| .+...++++|
T Consensus 83 ILVVa~dDGv~pQTiE--AI~hak~--a~vP~iVAiNKiDk~~~np~~v~-~el~~~gl~~---E~~---gg~v~~VpvS 151 (509)
T COG0532 83 ILVVAADDGVMPQTIE--AINHAKA--AGVPIVVAINKIDKPEANPDKVK-QELQEYGLVP---EEW---GGDVIFVPVS 151 (509)
T ss_pred EEEEEccCCcchhHHH--HHHHHHH--CCCCEEEEEecccCCCCCHHHHH-HHHHHcCCCH---hhc---CCceEEEEee
Confidence 9999999853333332 1223333 38999999999999865431111 1111111111 111 1226799999
Q ss_pred cCCcccHHHHHHHHHHHH
Q psy10443 162 ALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~ 179 (195)
|++|+|+.+++..+.-..
T Consensus 152 A~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 152 AKTGEGIDELLELILLLA 169 (509)
T ss_pred ccCCCCHHHHHHHHHHHH
Confidence 999999999999876543
No 248
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.72 E-value=7.9e-17 Score=124.57 Aligned_cols=169 Identities=15% Similarity=0.151 Sum_probs=105.2
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcCCC---CCCc-cc-ceeeccce-----------eE---EeC------------
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTDSF---PGEY-VP-TVFDNYSA-----------PF---TVD------------ 50 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~~~---~~~~-~~-t~~~~~~~-----------~~---~~~------------ 50 (195)
+....++|.++|+-..|||||+..|++... .++. .. |....|.. .. ...
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 345789999999999999999999997421 1000 00 00000000 00 000
Q ss_pred C----EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChh-cHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 51 G----IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPS-SFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 51 ~----~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
+ ....+.|+|+|||+.|.......+..+|++++|+|++++. ..+.. +++ ..+... .-.|+++++||+|+...
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl-~i~~~l-gi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHL-AAVEIM-KLKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHH-HHHHHc-CCCcEEEEEecccccCH
Confidence 0 0235779999999998766666778999999999998742 22222 222 222222 12468899999999754
Q ss_pred hHhhhhhhhcCCCCccHHHHHHHHHH--cCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 126 RETLNLLSEQNLSPVKREQGQKLANK--IRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
..... ..+++..+... ....+++++||++|.|++.+++.|.+.+..+.
T Consensus 187 ~~~~~----------~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~ 236 (460)
T PTZ00327 187 AQAQD----------QYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIPK 236 (460)
T ss_pred HHHHH----------HHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCC
Confidence 32111 11233333322 13368999999999999999999998776553
No 249
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=9.8e-17 Score=115.81 Aligned_cols=158 Identities=22% Similarity=0.230 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCc-cccccCCC-------CCC-
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE-DYDRLRPL-------SYP- 76 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~-~~~~~~~~-------~~~- 76 (195)
.-|+|.|.||||||||++.+++... ..+|+.|+..-.-+-+..+ ..+++++||||-- +....... .++
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~--~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERG--YLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecC--CceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 4699999999999999999998654 3567777755444433333 3477799999932 11111111 111
Q ss_pred CccEEEEEEeCCChhcH--HHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 77 QTDVFLICYSVVSPSSF--DNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 77 ~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
-.++++|++|.+....+ +... +++..++.... .|+++|+||+|...... .+++.......+.
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk~~f~-~p~v~V~nK~D~~~~e~--------------~~~~~~~~~~~~~ 310 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQI-SLLEEIKELFK-APIVVVINKIDIADEEK--------------LEEIEASVLEEGG 310 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHH-HHHHHHHHhcC-CCeEEEEecccccchhH--------------HHHHHHHHHhhcc
Confidence 25889999999875544 4444 46777777666 89999999999886532 2334444455554
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.....+++..+.+++.+...+.....+.
T Consensus 311 ~~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 311 EEPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred ccccceeeeehhhHHHHHHHHHHHhhch
Confidence 5567888999999998888877765444
No 250
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.72 E-value=2e-16 Score=124.57 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=77.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc--CCCCC--Cc------cccee----------ecc-ceeEEeCCEEEEEEEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT--DSFPG--EY------VPTVF----------DNY-SAPFTVDGIPVSLGLWDTA 62 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~--~~~~~--~~------~~t~~----------~~~-~~~~~~~~~~~~l~~~D~~ 62 (195)
.+..+|+++|.+++|||||+++|+. +.... .- ..+.. ..+ .....++...+.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999853 21110 00 00110 011 1112233445677899999
Q ss_pred CCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCccc
Q psy10443 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124 (195)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 124 (195)
|+..|......+++.+|++|+|+|+++... .....+...... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~--~~t~~l~~~~~~--~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE--TRTRKLMEVTRL--RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC--HHHHHHHHHHHh--cCCCEEEEEECccccC
Confidence 999887766778899999999999987422 221224444443 3789999999999864
No 251
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.72 E-value=9.4e-17 Score=124.38 Aligned_cols=158 Identities=11% Similarity=0.074 Sum_probs=98.7
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCC--CCCCc----------------------ccce---eeccc---eeEEeCCE
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDS--FPGEY----------------------VPTV---FDNYS---APFTVDGI 52 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~----------------------~~t~---~~~~~---~~~~~~~~ 52 (195)
.++.++|+++|+.++|||||+.+|+... ..... +.+. ....+ ....+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 3568999999999999999999887521 11000 0000 00000 01122334
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHH-------HHHHhhHHHHhhhCCCCc-EEEEeeCCCccc
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFD-------NVTSKWYPELKHHCPDAP-IILVGTKIDLRE 124 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~ 124 (195)
...+.++|+|||++|.......+..+|++|+|+|+++. .++ ....+| ..+.. .++| +++++||+|+..
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~-~~~~~--~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHA-LLAFT--LGVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHH-HHHHH--cCCCcEEEEEEcccCCc
Confidence 46777999999999988888889999999999999873 221 222222 22222 2664 688899999762
Q ss_pred chHhhhhhhhcCCCCccHHHHHHHHHHcC----CceeEEeccCCcccHHH
Q psy10443 125 DRETLNLLSEQNLSPVKREQGQKLANKIR----AVKYMECSALTQRGLRQ 170 (195)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~ 170 (195)
..-.... .....++++.+....+ .++++++||++|+|+.+
T Consensus 160 ~~~~~~~------~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKAR------YDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHH------HHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1100000 0012345667777665 36799999999999853
No 252
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.71 E-value=5.1e-17 Score=118.23 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=75.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcC--CCCC-----------------CcccceeeccceeEEeCCEEEEEEEEeCCCCcccc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD--SFPG-----------------EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD 68 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~--~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~ 68 (195)
+|+++|.+|+|||||+++|+.. .... .....+.......+..++ ..+.+|||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 6899999999999999999742 1100 000111111112233344 456699999998888
Q ss_pred ccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 69 RLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
..+..+++.+|++++|+|+++...-+.. .+...+... ++|+++++||+|+...
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t~--~~~~~~~~~--~~p~ivviNK~D~~~a 131 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQTE--TVWRQADRY--NVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 7788899999999999999875433322 233344433 6899999999998753
No 253
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.71 E-value=9.5e-17 Score=123.41 Aligned_cols=153 Identities=15% Similarity=0.094 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC--CCCCc----------ccce-------------ee----ccc---eeEEeCCEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS--FPGEY----------VPTV-------------FD----NYS---APFTVDGIPV 54 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~--~~~~~----------~~t~-------------~~----~~~---~~~~~~~~~~ 54 (195)
++|+++|..++|||||+.+|+... ..... ..+. .. ..+ ....+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999986531 11100 0000 00 000 0111122234
Q ss_pred EEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhh
Q psy10443 55 SLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSE 134 (195)
Q Consensus 55 ~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~ 134 (195)
.+.|+|+||++.|.......+..+|++++|+|++.....+... +| ..+... ...++++++||+|+........
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~-~~-~~~~~~-~~~~iivviNK~D~~~~~~~~~---- 153 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR-HS-YIASLL-GIRHVVLAVNKMDLVDYDEEVF---- 153 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH-HH-HHHHHc-CCCcEEEEEEecccccchHHHH----
Confidence 6679999999988655566788999999999998654333222 12 222221 1346889999999975321100
Q ss_pred cCCCCccHHHHHHHHHHcC--CceeEEeccCCcccHHH
Q psy10443 135 QNLSPVKREQGQKLANKIR--AVKYMECSALTQRGLRQ 170 (195)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~ 170 (195)
....++...+....+ .++++++||++|+|+.+
T Consensus 154 ----~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 154 ----ENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred ----HHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 011123333444433 25799999999999875
No 254
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.71 E-value=3.5e-16 Score=115.88 Aligned_cols=81 Identities=21% Similarity=0.218 Sum_probs=54.3
Q ss_pred EEEEcCCCCchHHHHHHhhcCCCC-CCcccceeecccee---------------------EEeCC-EEEEEEEEeCCCC-
Q psy10443 9 CVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAP---------------------FTVDG-IPVSLGLWDTAGQ- 64 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~---------------------~~~~~-~~~~l~~~D~~G~- 64 (195)
|+++|.|+||||||+++|++.... .+|+.++....... ...++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987642 33333331111111 11233 3467899999997
Q ss_pred ---ccccccCCCC---CCCccEEEEEEeCCC
Q psy10443 65 ---EDYDRLRPLS---YPQTDVFLICYSVVS 89 (195)
Q Consensus 65 ---~~~~~~~~~~---~~~~d~~i~v~d~~~ 89 (195)
+++..+...+ ++++|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 4444443443 889999999999973
No 255
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.70 E-value=1.6e-16 Score=128.56 Aligned_cols=154 Identities=18% Similarity=0.117 Sum_probs=92.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCC----------cccceeecc----------------------ceeEEe
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGE----------YVPTVFDNY----------------------SAPFTV 49 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~----------~~~t~~~~~----------------------~~~~~~ 49 (195)
+..++|+++|.+++|||||+++|+... .... ...++.+.+ ...+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 567899999999999999999998632 1110 011100000 011222
Q ss_pred CCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhh
Q psy10443 50 DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETL 129 (195)
Q Consensus 50 ~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~ 129 (195)
++ ..+.|+|+||++.|.......+..+|++++|+|+++...-+... ....+... ...|+++++||+|+.......
T Consensus 102 ~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e--~~~~~~~~-~~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 102 PK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR--HSFIASLL-GIRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred CC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH--HHHHHHHh-CCCeEEEEEEecccccchhHH
Confidence 33 35569999999887655555678999999999997653322221 11222222 135788999999997522100
Q ss_pred hhhhhcCCCCccHHHHHHHHHHcC--CceeEEeccCCcccHHH
Q psy10443 130 NLLSEQNLSPVKREQGQKLANKIR--AVKYMECSALTQRGLRQ 170 (195)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~ 170 (195)
. .....+...+...++ ..+++++||++|.|+.+
T Consensus 177 ~--------~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 F--------DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred H--------HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 0 001123334444443 25689999999999874
No 256
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.69 E-value=2.8e-15 Score=108.10 Aligned_cols=153 Identities=21% Similarity=0.197 Sum_probs=109.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc-------ccCCCCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD-------RLRPLSYPQ 77 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~-------~~~~~~~~~ 77 (195)
.-.++++|.|++|||||++.|++... ...|..|+.......+.++|-++. +.|+||--.-. ...-...++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQ--ild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQ--LLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEE--EEcCcccccCcccCCCCcceeeeeecc
Confidence 45899999999999999999999654 467888888777788888886555 99999832211 223456889
Q ss_pred ccEEEEEEeCCChhc-HHHHHHhh----------------------------------------HHHHhhh---C-----
Q psy10443 78 TDVFLICYSVVSPSS-FDNVTSKW----------------------------------------YPELKHH---C----- 108 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s-~~~~~~~~----------------------------------------~~~~~~~---~----- 108 (195)
||.+++|+|+....+ .+-+...+ ...++++ +
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999986655 32222211 1111111 0
Q ss_pred -----------------CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHH
Q psy10443 109 -----------------PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQV 171 (195)
Q Consensus 109 -----------------~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 171 (195)
.-+|.+.|+||.|+... ++...+.+.. ..+.+||..+.|++++
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-----------------e~~~~l~~~~---~~v~isa~~~~nld~L 280 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-----------------EELERLARKP---NSVPISAKKGINLDEL 280 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-----------------HHHHHHHhcc---ceEEEecccCCCHHHH
Confidence 02688999999998763 2333333333 5789999999999999
Q ss_pred HHHHHHHHc
Q psy10443 172 FDEAVRAVL 180 (195)
Q Consensus 172 ~~~l~~~~~ 180 (195)
.+.|.+.+-
T Consensus 281 ~e~i~~~L~ 289 (365)
T COG1163 281 KERIWDVLG 289 (365)
T ss_pred HHHHHHhhC
Confidence 999999874
No 257
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.69 E-value=7.7e-16 Score=125.62 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=79.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC--CCC--CCc---------------ccceeeccceeEEeCCEEEEEEEEeCCCCc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD--SFP--GEY---------------VPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~--~~~--~~~---------------~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
+-.||+++|.+++|||||+++|+.. ... ... ..++.......+.+++ +.+.+|||||+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~~ 86 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGHV 86 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCCc
Confidence 3459999999999999999999742 110 000 1111111122334444 566799999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
.+......+++.+|++++|+|+++....+... +...+... ++|+++++||+|+...
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~~~--~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSET--VWRQANRY--EVPRIAFVNKMDKTGA 142 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHHH--HHHHHHHc--CCCEEEEEECCCCCCC
Confidence 88777788899999999999999865544332 33334333 6899999999998753
No 258
>KOG0090|consensus
Probab=99.68 E-value=1.5e-16 Score=108.06 Aligned_cols=169 Identities=18% Similarity=0.203 Sum_probs=107.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCC---CccEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYP---QTDVF 81 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~---~~d~~ 81 (195)
++-.|+++|..+||||+|.-+|..+...+.+.+... -...+.+++.. +.++|.|||++.+.-...++. .+-++
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep--n~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP--NEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccCeeeeecc--ceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 345799999999999999999998754332221111 13344444444 459999999988765555555 78999
Q ss_pred EEEEeCCC-hhcHHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcccchHhhhhhhhc--C----------CCCccHHH-
Q psy10443 82 LICYSVVS-PSSFDNVTSKWYPELKHH---CPDAPIILVGTKIDLREDRETLNLLSEQ--N----------LSPVKREQ- 144 (195)
Q Consensus 82 i~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~--~----------~~~~~~~~- 144 (195)
+||+|... +....++.++++..+... ...+|++++.||.|+..+...+..-..+ + .+.+..++
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 99999753 344455555566666554 3468999999999997544332211110 0 01111111
Q ss_pred ---------H--HHHHHHc-CCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 145 ---------G--QKLANKI-RAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 145 ---------~--~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
. ..|.+-. ..+.|.++|++++ +++++-+|+.+.
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 1 1222211 3367899999999 899999998875
No 259
>COG2262 HflX GTPases [General function prediction only]
Probab=99.67 E-value=2.1e-15 Score=112.14 Aligned_cols=155 Identities=21% Similarity=0.198 Sum_probs=107.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeC-CEEEEEEEEeCCCCcc---------ccccCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVD-GIPVSLGLWDTAGQED---------YDRLRPLS 74 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~l~~~D~~G~~~---------~~~~~~~~ 74 (195)
-..|.++|-.|+|||||+|+|++... ..+.-.++-+..+....+. +..+ .+.||-|--+ |.+. -.-
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~v--lLtDTVGFI~~LP~~LV~AFksT-LEE 268 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKV--LLTDTVGFIRDLPHPLVEAFKST-LEE 268 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceE--EEecCccCcccCChHHHHHHHHH-HHH
Confidence 36899999999999999999998643 3444555555555555555 4444 4999988321 2221 122
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
...+|.++.|+|+++|.....+.. -...+.+. ....|+++|.||+|+..... .........
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----------------~~~~~~~~~ 330 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDEE-----------------ILAELERGS 330 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCchh-----------------hhhhhhhcC
Confidence 447999999999999966665553 44455543 35699999999999876531 111122221
Q ss_pred CceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
...+.+||++|.|++.+++.|.+.+...
T Consensus 331 -~~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 331 -PNPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred -CCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 1478999999999999999999987643
No 260
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.67 E-value=6.1e-16 Score=99.16 Aligned_cols=104 Identities=23% Similarity=0.337 Sum_probs=70.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccc----------cccCCCCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY----------DRLRPLSY 75 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~----------~~~~~~~~ 75 (195)
+|+|+|.+|+|||||++.|++... .....+++.......+.+++..+. ++|+||-... ..... .+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~--~vDtpG~~~~~~~~~~~~~~~~~~~-~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFI--LVDTPGINDGESQDNDGKEIRKFLE-QI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEE--EEESSSCSSSSHHHHHHHHHHHHHH-HH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEE--EEeCCCCcccchhhHHHHHHHHHHH-HH
Confidence 689999999999999999998532 233334443333345566777765 9999995322 11222 34
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeC
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTK 119 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK 119 (195)
..+|++++|+|++++.. .... .++..++ .+.|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~-~~~~-~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT-EDDK-NILRELK---NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH-HHHH-HHHHHHH---TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC-HHHH-HHHHHHh---cCCCEEEEEcC
Confidence 78999999999887422 1122 2444453 48999999998
No 261
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.67 E-value=4.5e-15 Score=103.75 Aligned_cols=164 Identities=16% Similarity=0.127 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCC-C--cccceeeccceeEEeCCEEEEEEEEeCCCCccccc-----------cCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPG-E--YVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR-----------LRP 72 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-----------~~~ 72 (195)
++|+++|.+|+||||++|.+++..... . ..+.+.........+++.. +.++||||-..... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~--i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRR--VNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeE--EEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999875321 1 1123333233344556655 45999999543321 112
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCC---CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCP---DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA 149 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (195)
....++|++++|+++.+ .+..+. ..+..+..... -.++++++|+.|.......+.... ......+.+.
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d~--~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~------~~~~~l~~l~ 149 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEEE--QAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLE------NSCEALKRLL 149 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHHH--HHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHH------hccHHHHHHH
Confidence 23467899999999876 332222 23444443321 258899999999876532222111 1123455555
Q ss_pred HHcCCceeEEec-----cCCcccHHHHHHHHHHHHcCC
Q psy10443 150 NKIRAVKYMECS-----ALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 150 ~~~~~~~~~~~S-----a~~~~~v~~~~~~l~~~~~~~ 182 (195)
+..+. .++..+ +..+.++.++++.+.+.+.+.
T Consensus 150 ~~c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 150 EKCGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred HHhCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 55553 343333 566889999999998888763
No 262
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.66 E-value=4.6e-16 Score=96.77 Aligned_cols=137 Identities=22% Similarity=0.210 Sum_probs=98.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCC----CccccccCCCCCCCccEEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG----QEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G----~~~~~~~~~~~~~~~d~~i~ 83 (195)
||+++|..|+|||||.+.|.+... .+..|. -++++++. .+|+|| +..+.+-.......+|.+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQ------Ave~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQ------AVEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccc------eeeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 789999999999999999998643 222222 22333332 678998 33333333445668999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|-.++++++.-. ..+..-. ..|++=+++|.|+.++ .+-+..++|..+.|.-++|++|+.
T Consensus 71 v~~and~~s~f~------p~f~~~~-~k~vIgvVTK~DLaed--------------~dI~~~~~~L~eaGa~~IF~~s~~ 129 (148)
T COG4917 71 VHAANDPESRFP------PGFLDIG-VKKVIGVVTKADLAED--------------ADISLVKRWLREAGAEPIFETSAV 129 (148)
T ss_pred eecccCccccCC------ccccccc-ccceEEEEecccccch--------------HhHHHHHHHHHHcCCcceEEEecc
Confidence 999999877332 2222221 3468999999999875 234567888899998999999999
Q ss_pred CcccHHHHHHHHHH
Q psy10443 164 TQRGLRQVFDEAVR 177 (195)
Q Consensus 164 ~~~~v~~~~~~l~~ 177 (195)
++.|+++++..|..
T Consensus 130 d~~gv~~l~~~L~~ 143 (148)
T COG4917 130 DNQGVEELVDYLAS 143 (148)
T ss_pred CcccHHHHHHHHHh
Confidence 99999999988764
No 263
>PRK12739 elongation factor G; Reviewed
Probab=99.66 E-value=2.5e-15 Score=122.62 Aligned_cols=116 Identities=15% Similarity=0.077 Sum_probs=79.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC--CC------CC-----------CcccceeeccceeEEeCCEEEEEEEEeCCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD--SF------PG-----------EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~--~~------~~-----------~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~ 64 (195)
.+..+|+++|.+++|||||+++|+.. .. .. ....++.......+.+++. .+.++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~--~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGH--RINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCE--EEEEEcCCCH
Confidence 35578999999999999999999742 11 00 0111111111223344444 5569999999
Q ss_pred ccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
..+...+...++.+|++++|+|+++....+... .+..+... ++|+++++||+|+...
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~--i~~~~~~~--~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET--VWRQADKY--GVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEECCCCCCC
Confidence 888777888889999999999998765443332 33334333 6899999999999754
No 264
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.65 E-value=4.4e-15 Score=107.87 Aligned_cols=162 Identities=23% Similarity=0.218 Sum_probs=106.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc----ccCCCC---CCCcc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD----RLRPLS---YPQTD 79 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~----~~~~~~---~~~~d 79 (195)
.|-++|.|++|||||++.++.... ..+|+.|+.......+.+.+ .-.+.+=|.||--+-. -+-..| ++.+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 467999999999999999998643 47888888666555555522 2245599999843321 222223 34689
Q ss_pred EEEEEEeCCChhc---HHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 80 VFLICYSVVSPSS---FDNVTSKWYPELKHH---CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 80 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
+++.|+|++..+. .++... +...+..+ ..+.|.+||+||+|+..+.+ ........+.+..+
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~-i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e------------~~~~~~~~l~~~~~ 306 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQT-IRNELEKYSPKLAEKPRIVVLNKIDLPLDEE------------ELEELKKALAEALG 306 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHH-HHHHHHHhhHHhccCceEEEEeccCCCcCHH------------HHHHHHHHHHHhcC
Confidence 9999999986543 343332 44445444 34789999999999765532 11122333343333
Q ss_pred CceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 154 AVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 154 ~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
....+.+|+.+++|++++...+.+.+....
T Consensus 307 ~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 307 WEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred CCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 222223999999999999999888776553
No 265
>KOG1145|consensus
Probab=99.65 E-value=4e-15 Score=113.79 Aligned_cols=160 Identities=17% Similarity=0.226 Sum_probs=108.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCc-ccce--eeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEY-VPTV--FDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDV 80 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~-~~t~--~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~ 80 (195)
.++--|-++|.-..|||||+..|-+....... .+.+ ..-|..... +|..+. |.|||||..|..|+.....-+|.
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iT--FLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSIT--FLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEE--EecCCcHHHHHHHHhccCccccE
Confidence 35667899999999999999999887654322 2222 112223333 565554 99999999999999999999999
Q ss_pred EEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc-CCceeEE
Q psy10443 81 FLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI-RAVKYME 159 (195)
Q Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 159 (195)
+++|+.+.|.---+.++ -+... ...++|+++.+||+|....++. ....++....+. ...+ |.+++++
T Consensus 228 vVLVVAadDGVmpQT~E--aIkhA--k~A~VpiVvAinKiDkp~a~pe-kv~~eL~~~gi~-------~E~~GGdVQvip 295 (683)
T KOG1145|consen 228 VVLVVAADDGVMPQTLE--AIKHA--KSANVPIVVAINKIDKPGANPE-KVKRELLSQGIV-------VEDLGGDVQVIP 295 (683)
T ss_pred EEEEEEccCCccHhHHH--HHHHH--HhcCCCEEEEEeccCCCCCCHH-HHHHHHHHcCcc-------HHHcCCceeEEE
Confidence 99999999864444433 11222 2348999999999998765431 111111101111 1122 4488999
Q ss_pred eccCCcccHHHHHHHHHHH
Q psy10443 160 CSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 160 ~Sa~~~~~v~~~~~~l~~~ 178 (195)
+||++|.|++.+-+++.-.
T Consensus 296 iSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 296 ISALTGENLDLLEEAILLL 314 (683)
T ss_pred eecccCCChHHHHHHHHHH
Confidence 9999999999998886553
No 266
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.62 E-value=1e-14 Score=112.79 Aligned_cols=171 Identities=17% Similarity=0.232 Sum_probs=117.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEe---CCEEEEEEEEeCCCCccccccCCCCCCC----c
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTV---DGIPVSLGLWDTAGQEDYDRLRPLSYPQ----T 78 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~~~D~~G~~~~~~~~~~~~~~----~ 78 (195)
.-.|+|+|..++|||||+.+|.+.. .+.++.+-.|.+...- .+...++.+|-+.|...+..+....+.. -
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 4589999999999999999987643 3344444433321111 2234678999999877777666665553 2
Q ss_pred cEEEEEEeCCChhcHHHHHHhhHHHHhhhC--------------------------------------------------
Q psy10443 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHC-------------------------------------------------- 108 (195)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------------------------- 108 (195)
-.+|+|+|.+.|+.+-+...+|+..++...
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 578899999998777654444532221110
Q ss_pred -------------CCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHH
Q psy10443 109 -------------PDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEA 175 (195)
Q Consensus 109 -------------~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 175 (195)
-++|++||++|+|.....+.+..+.+.+...+ ..-++.||..+| ..++.||++...+++-++..|
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfI-qq~LR~~cL~yG-AsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFI-QQYLRTFCLKYG-ASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHH-HHHHHHHHHhcC-CeEEEeeccccccHHHHHHHH
Confidence 03799999999999876554443333332222 355788999999 578999999999999999998
Q ss_pred HHHHcC
Q psy10443 176 VRAVLR 181 (195)
Q Consensus 176 ~~~~~~ 181 (195)
...++.
T Consensus 260 ~h~l~~ 265 (472)
T PF05783_consen 260 LHRLYG 265 (472)
T ss_pred HHHhcc
Confidence 888764
No 267
>PRK00007 elongation factor G; Reviewed
Probab=99.62 E-value=1.4e-14 Score=118.27 Aligned_cols=116 Identities=14% Similarity=0.054 Sum_probs=77.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc--CCCC------C-----------CcccceeeccceeEEeCCEEEEEEEEeCCCCc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT--DSFP------G-----------EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~--~~~~------~-----------~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
+-.||+++|.+++|||||+++|+. +... . ....++.+.....+.+++ ..+.++||||+.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~~ 86 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGHV 86 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCcH
Confidence 446999999999999999999974 1110 0 011111222222344444 456699999998
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
.|.......++.+|++++|+|+......++.. ....+... ++|.++++||+|+....
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~--~~~~~~~~--~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSET--VWRQADKY--KVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHH--HHHHHHHc--CCCEEEEEECCCCCCCC
Confidence 87666666788999999999998765444432 23334333 68999999999987533
No 268
>KOG1191|consensus
Probab=99.62 E-value=4.2e-15 Score=112.42 Aligned_cols=165 Identities=21% Similarity=0.235 Sum_probs=108.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcc-cccc--------CC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQED-YDRL--------RP 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~-~~~~--------~~ 72 (195)
...++|+++|.||||||||+|.|.+... ..+..+|+.+-....++++|.++. +.||+|-.+ -... -.
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~--L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVR--LSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEE--EEeccccccccCChhHHHhHHHHH
Confidence 3568999999999999999999999753 466677888888888999998777 999999544 1111 12
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHH-HhhHHHHhhh-------CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVT-SKWYPELKHH-------CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~-------~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
..+..+|++++|+|+...+.-+++. ...+.....- ...-|++++.||.|+..+-.... ..
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~------------~~ 411 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMT------------KI 411 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcccccc------------CC
Confidence 2356799999999994432222222 1122222211 12368999999999987622111 00
Q ss_pred HHHHHH--HcCCc-eeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 145 GQKLAN--KIRAV-KYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 145 ~~~~~~--~~~~~-~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
...+.. ..+.. .+.++|+++++|++.+...+.+.+...
T Consensus 412 ~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 412 PVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred ceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 000111 11112 356699999999999999888766533
No 269
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=9.3e-15 Score=108.70 Aligned_cols=161 Identities=17% Similarity=0.125 Sum_probs=98.6
Q ss_pred CCCcceEEEEEcCCCCchHHHHHHhhcC--CCCC---------------C---c----ccce---eeccc---eeEEeCC
Q psy10443 2 SSGRPIKCVVVGDGTVGKTCMLISYTTD--SFPG---------------E---Y----VPTV---FDNYS---APFTVDG 51 (195)
Q Consensus 2 ~~~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~---------------~---~----~~t~---~~~~~---~~~~~~~ 51 (195)
+.++.++++++|+..+|||||+.+|+.. .++. + + +.+. +...+ ....+..
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 3477899999999999999999998763 1111 0 0 0000 00000 0111233
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHH--H--HHhhHHHHhhhCCCCcEEEEeeCCCcccchH
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDN--V--TSKWYPELKHHCPDAPIILVGTKIDLREDRE 127 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~--~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 127 (195)
..+.+.+.|+|||..|-...-.....||++|+|+|+.+.+.... . ..+-...+.....--.++|++||+|..+-++
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 44678899999999998877888889999999999987631111 0 0011112222222356788899999987433
Q ss_pred hhhhhhhcCCCCccHHHHHHHHHHcCC----ceeEEeccCCcccHHH
Q psy10443 128 TLNLLSEQNLSPVKREQGQKLANKIRA----VKYMECSALTQRGLRQ 170 (195)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~v~~ 170 (195)
.... ....+...+.+..+. ++|+++|+..|+|+.+
T Consensus 163 ~rf~--------ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 163 ERFE--------EIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHH--------HHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 2110 112233334444432 5699999999999865
No 270
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.60 E-value=2.9e-14 Score=108.79 Aligned_cols=82 Identities=23% Similarity=0.244 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCC-CCcccceeeccceeEE---------------------eCC-EEEEEEEEeCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTVFDNYSAPFT---------------------VDG-IPVSLGLWDTAG 63 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~---------------------~~~-~~~~l~~~D~~G 63 (195)
++|+++|.||||||||+++|++..+. .+|..++......... .++ ..+.+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987653 3454444222111111 112 236788999999
Q ss_pred C----ccccccCCCC---CCCccEEEEEEeCC
Q psy10443 64 Q----EDYDRLRPLS---YPQTDVFLICYSVV 88 (195)
Q Consensus 64 ~----~~~~~~~~~~---~~~~d~~i~v~d~~ 88 (195)
. .....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2333333344 78999999999997
No 271
>PRK12740 elongation factor G; Reviewed
Probab=99.60 E-value=7.8e-15 Score=119.73 Aligned_cols=108 Identities=20% Similarity=0.218 Sum_probs=71.7
Q ss_pred EcCCCCchHHHHHHhhcCC--CC--CCcc--cceeec-------------cceeEEeCCEEEEEEEEeCCCCccccccCC
Q psy10443 12 VGDGTVGKTCMLISYTTDS--FP--GEYV--PTVFDN-------------YSAPFTVDGIPVSLGLWDTAGQEDYDRLRP 72 (195)
Q Consensus 12 ~G~~~~GKtsli~~l~~~~--~~--~~~~--~t~~~~-------------~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~ 72 (195)
+|.+++|||||+++|.... .. .... .+..+. ....+.++ .+.+.+||+||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence 5999999999999995421 10 0000 011110 01123333 35677999999988877777
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
.+++.+|++++|+|+++........ .| ..+... ++|+++++||+|+...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~-~~-~~~~~~--~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTET-VW-RQAEKY--GVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHH-HH-HHHHHc--CCCEEEEEECCCCCCC
Confidence 7889999999999999876555432 23 333332 7899999999998743
No 272
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.60 E-value=2.4e-14 Score=106.72 Aligned_cols=129 Identities=16% Similarity=0.214 Sum_probs=87.8
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCCh----------hcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCc
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSP----------SSFDNVTSKWYPELKHH-CPDAPIILVGTKIDL 122 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~ 122 (195)
+.+.+||++|+...+..|..++.++++++||+|+++. ..+.+....|...+... ..+.|+++++||.|+
T Consensus 161 ~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~ 240 (317)
T cd00066 161 LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDL 240 (317)
T ss_pred eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHH
Confidence 5577999999999999999999999999999999874 44555554444444433 368999999999998
Q ss_pred ccchHhhhhhhhcCCC----CccHHHHHHHHHH-----c----CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 123 REDRETLNLLSEQNLS----PVKREQGQKLANK-----I----RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 123 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-----~----~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
........-....-+. ..+.+.+..|... . ..+.+..++|.+..+++.+|+.+.+.+...
T Consensus 241 f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 241 FEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 6543322111111110 1223333333221 1 224567799999999999999999887654
No 273
>PRK09866 hypothetical protein; Provisional
Probab=99.59 E-value=5.4e-14 Score=110.64 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=72.0
Q ss_pred EEEEeCCCCccc-----cccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhh
Q psy10443 56 LGLWDTAGQEDY-----DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLN 130 (195)
Q Consensus 56 l~~~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~ 130 (195)
+.|.||||-... .......+..+|+++||+|+++..+..+. .+...+.....+.|+++|+||+|+.....
T Consensus 232 IIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dree--- 306 (741)
T PRK09866 232 LTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRNS--- 306 (741)
T ss_pred EEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCccc---
Confidence 668999995432 11233468899999999999875444432 24555555433469999999999864211
Q ss_pred hhhhcCCCCccHHHHHHHHH------HcCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 131 LLSEQNLSPVKREQGQKLAN------KIRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
...+....+.. ......++++||+.|.|++.+++.|..
T Consensus 307 ---------ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 ---------DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred ---------chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 11223333322 112346899999999999999999887
No 274
>KOG1532|consensus
Probab=99.59 E-value=3e-14 Score=100.66 Aligned_cols=175 Identities=21% Similarity=0.244 Sum_probs=96.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCc-------ccceee-ccceeEEe--------------------------
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEY-------VPTVFD-NYSAPFTV-------------------------- 49 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~-------~~t~~~-~~~~~~~~-------------------------- 49 (195)
.++.-|+|+|..||||||+++||...-..... +|.... .+...+.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 46789999999999999999998763211111 111100 00000000
Q ss_pred ---------------CCEEEEEEEEeCCCCcc-ccccCCCC-----CC--CccEEEEEEeCCC---hhcHHHHHHhhHHH
Q psy10443 50 ---------------DGIPVSLGLWDTAGQED-YDRLRPLS-----YP--QTDVFLICYSVVS---PSSFDNVTSKWYPE 103 (195)
Q Consensus 50 ---------------~~~~~~l~~~D~~G~~~-~~~~~~~~-----~~--~~d~~i~v~d~~~---~~s~~~~~~~~~~~ 103 (195)
....+...++|||||-+ |.+.-..+ +. ..-++++|+|... +..|-.-.-+--.+
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi 176 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI 176 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence 02224467999999854 33222111 11 2456777888643 22221111011111
Q ss_pred HhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCC----------C---ccHHHHHHHHHHcCCceeEEeccCCcccHHH
Q psy10443 104 LKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLS----------P---VKREQGQKLANKIRAVKYMECSALTQRGLRQ 170 (195)
Q Consensus 104 ~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 170 (195)
+- ...+|.+++.||+|+....-..++..+.+.. . +.......+-..+..+..+.+|+.+|.|.++
T Consensus 177 ly--ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~dd 254 (366)
T KOG1532|consen 177 LY--KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDD 254 (366)
T ss_pred HH--hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHH
Confidence 21 2479999999999998776544443221110 0 1111112233344556789999999999999
Q ss_pred HHHHHHHHHc
Q psy10443 171 VFDEAVRAVL 180 (195)
Q Consensus 171 ~~~~l~~~~~ 180 (195)
+|..+.+.+.
T Consensus 255 f~~av~~~vd 264 (366)
T KOG1532|consen 255 FFTAVDESVD 264 (366)
T ss_pred HHHHHHHHHH
Confidence 9999887764
No 275
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.59 E-value=3.3e-14 Score=118.55 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=91.9
Q ss_pred CchHHHHHHhhcCCCCCCcccceeeccc-eeEEeCC-E----------EE-----EEEEEeCCCCccccccCCCCCCCcc
Q psy10443 17 VGKTCMLISYTTDSFPGEYVPTVFDNYS-APFTVDG-I----------PV-----SLGLWDTAGQEDYDRLRPLSYPQTD 79 (195)
Q Consensus 17 ~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~-~----------~~-----~l~~~D~~G~~~~~~~~~~~~~~~d 79 (195)
++||||+..+.+................ ..+..+. . .. .+.|||||||+.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 4599999999987654322222211111 1111110 0 01 2679999999999888878888999
Q ss_pred EEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHh--------------hhhhhhcC---------
Q psy10443 80 VFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRET--------------LNLLSEQN--------- 136 (195)
Q Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~--------------~~~~~~~~--------- 136 (195)
++++|+|+++.-.-+... .+..+... ++|+++++||+|+...-.. .....+..
T Consensus 552 ivlLVVDa~~Gi~~qT~e--~I~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~ 627 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIE--AINILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGK 627 (1049)
T ss_pred EEEEEEECcccCCHhHHH--HHHHHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence 999999998732222221 22333333 6899999999998642110 00000000
Q ss_pred --CCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 137 --LSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 137 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
......+.........+.++++++||++|+|+++++..|....
T Consensus 628 L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 628 LYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 0000000000001112457899999999999999998876543
No 276
>PRK13768 GTPase; Provisional
Probab=99.56 E-value=9.3e-15 Score=105.64 Aligned_cols=126 Identities=17% Similarity=0.099 Sum_probs=74.5
Q ss_pred EEEEEeCCCCcccc---ccCCCC---CCC--ccEEEEEEeCCChhcHHHHHH-hhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 55 SLGLWDTAGQEDYD---RLRPLS---YPQ--TDVFLICYSVVSPSSFDNVTS-KWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 55 ~l~~~D~~G~~~~~---~~~~~~---~~~--~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
.+.+||+||+.++. ..+..+ +.. ++++++|+|++......+... .|+........+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 46699999976643 222222 222 899999999976544333221 233332222347999999999999876
Q ss_pred hHhhhhhhhcCC----------CC-ccHHHHH---HHHHHcC-CceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 126 RETLNLLSEQNL----------SP-VKREQGQ---KLANKIR-AVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 126 ~~~~~~~~~~~~----------~~-~~~~~~~---~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.+.......... .. ...+-.. +..+.++ ..+++++|++++.|+++++++|.+.+.
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 544332111110 00 0011111 1222333 247899999999999999999988775
No 277
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.55 E-value=4.3e-14 Score=106.19 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=87.1
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCCh----------hcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCc
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSP----------SSFDNVTSKWYPELKHH-CPDAPIILVGTKIDL 122 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~ 122 (195)
+.+.+||++|+...+..|..++.+++++|||+|+++- ..+.+....|...+... ..+.|+++++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 3467999999999999999999999999999999973 34555554444444432 468999999999998
Q ss_pred ccchHhhhhhhhcCCC---CccHHHHHHHHH-----Hc-----CCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 123 REDRETLNLLSEQNLS---PVKREQGQKLAN-----KI-----RAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 123 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~-----~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
....-........-+. ..+.+.+..|.. .. ..+.++.++|.+..++..+|+.+.+.+....
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 7544322211111110 012233333222 11 1245677899999999999999888776543
No 278
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.52 E-value=4.2e-14 Score=115.84 Aligned_cols=116 Identities=17% Similarity=0.088 Sum_probs=77.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CC---------CCcc-------cceeecc-ceeEEeCCEEEEEEEEeCCCCc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FP---------GEYV-------PTVFDNY-SAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~---------~~~~-------~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
+..||+++|+.++|||||+++|+... .. ..+. .|..... ......++..+.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 34699999999999999999997521 00 0111 1111111 1112245667888999999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCccc
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 124 (195)
.|.......++.+|++++|+|+.+....+... .|..... .+.|.++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~-~~~~~~~---~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTET-VLRQALK---ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHHH-HHHHHHH---cCCCEEEEEEChhccc
Confidence 98877778899999999999998753333222 2322222 2678899999999864
No 279
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=7.2e-14 Score=100.77 Aligned_cols=170 Identities=16% Similarity=0.134 Sum_probs=112.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC---C----------------------CCCcccceeeccceeEEeC----CEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS---F----------------------PGEYVPTVFDNYSAPFTVD----GIPVS 55 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~---~----------------------~~~~~~t~~~~~~~~~~~~----~~~~~ 55 (195)
.++||.++|.-..|||||...|++-- + ++-+.|. .......+... ...-+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~-~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPE-CYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCc-ccccCCCCCCCCCCccEEEE
Confidence 58999999999999999999998731 0 0001000 00000011111 12235
Q ss_pred EEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhc
Q psy10443 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQ 135 (195)
Q Consensus 56 l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~ 135 (195)
+.|.|.|||+-.-+...+...-.|++++|+.++.+..-....++ +..+.- ..-..++++.||.|+.....
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EH-l~AleI-igik~iiIvQNKIDlV~~E~-------- 157 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREH-LMALEI-IGIKNIIIVQNKIDLVSRER-------- 157 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHH-HHHHhh-hccceEEEEecccceecHHH--------
Confidence 77999999998766655566667999999999875433333222 222211 11357899999999987654
Q ss_pred CCCCccHHHHHHHHHHc--CCceeEEeccCCcccHHHHHHHHHHHHcCCCcccc
Q psy10443 136 NLSPVKREQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAVLRPEPVKR 187 (195)
Q Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~~~~ 187 (195)
....++++.+|.+.- ...|++++||..+.|++-+++.|.+.+..+...-.
T Consensus 158 --AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~ 209 (415)
T COG5257 158 --ALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLD 209 (415)
T ss_pred --HHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCC
Confidence 224567788887754 23689999999999999999999999987766443
No 280
>KOG1490|consensus
Probab=99.52 E-value=2.3e-14 Score=108.74 Aligned_cols=164 Identities=20% Similarity=0.119 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCC---------CCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPL---------SYP 76 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~---------~~~ 76 (195)
-.++++|.|+||||||++.++.... ..+|..|+...+.+- ++-...++++.||||--..--.... ..+
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH--~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAH 246 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH--LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAH 246 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh--hhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHH
Confidence 4689999999999999999988754 245666665554432 3334467889999993221100011 111
Q ss_pred CccEEEEEEeCCChhcH--HHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 77 QTDVFLICYSVVSPSSF--DNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 77 ~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
--.+|+|+.|++....+ .+.. +++..++..+.+.|+++|+||+|+...... ....++..+...+.+.
T Consensus 247 LraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~IlvlNK~D~m~~edL----------~~~~~~ll~~~~~~~~ 315 (620)
T KOG1490|consen 247 LRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTILVLNKIDAMRPEDL----------DQKNQELLQTIIDDGN 315 (620)
T ss_pred hhhhheeeeechhhhCCCHHHHH-HHHHHhHHHhcCCceEEEeecccccCcccc----------CHHHHHHHHHHHhccC
Confidence 23678999999875443 3443 477888888889999999999999887541 1112234444455555
Q ss_pred ceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
++++++|..+.+|+-++....++.+...+
T Consensus 316 v~v~~tS~~~eegVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 316 VKVVQTSCVQEEGVMDVRTTACEALLAAR 344 (620)
T ss_pred ceEEEecccchhceeeHHHHHHHHHHHHH
Confidence 88999999999999998888877766443
No 281
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.49 E-value=1.5e-13 Score=88.87 Aligned_cols=113 Identities=32% Similarity=0.367 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCcc-cceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEYV-PTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
+||+++|+.|+|||+|+.++....+...+. +|.. +..+...+.+.++.+++|+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 589999999999999999998777654332 3322 3334456778889999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT 164 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (195)
+.++.+++..+ |...+... ..++|.++++||.|+... .....++. .+++++|+++
T Consensus 55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~------------~~~~~~~~---------~~~~~~s~~~ 110 (124)
T smart00010 55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEE------------RQVATEEG---------LEFAETSAKT 110 (124)
T ss_pred EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhh------------CcCCHHHH---------HHHHHHhCCC
Confidence 99999888654 55555443 346889999999997432 11222222 2355678899
Q ss_pred cccHH
Q psy10443 165 QRGLR 169 (195)
Q Consensus 165 ~~~v~ 169 (195)
+.|+.
T Consensus 111 ~~~~~ 115 (124)
T smart00010 111 PEEGE 115 (124)
T ss_pred cchhh
Confidence 98874
No 282
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.48 E-value=1e-12 Score=99.21 Aligned_cols=165 Identities=16% Similarity=0.082 Sum_probs=108.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCC--CCCCcccce------------eec-cceeEEeCCEEEEEEEEeCCCCcccccc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTV------------FDN-YSAPFTVDGIPVSLGLWDTAGQEDYDRL 70 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~------------~~~-~~~~~~~~~~~~~l~~~D~~G~~~~~~~ 70 (195)
--||+++-.-..|||||+..|+... |.+...-.. +-. ..+...++-..+++++.|||||..|-..
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 3589999999999999999998742 222111110 000 1112233334477889999999999988
Q ss_pred CCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
....+.-.|++++++|+.+..--+.-- .....+. .+++.++|+||+|....++..- . ++...+..
T Consensus 85 VERvl~MVDgvlLlVDA~EGpMPQTrF-VlkKAl~---~gL~PIVVvNKiDrp~Arp~~V----------v-d~vfDLf~ 149 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPMPQTRF-VLKKALA---LGLKPIVVINKIDRPDARPDEV----------V-DEVFDLFV 149 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCCCchhh-hHHHHHH---cCCCcEEEEeCCCCCCCCHHHH----------H-HHHHHHHH
Confidence 888999999999999998753322211 0122222 2778888999999987654211 1 22223322
Q ss_pred HcCC------ceeEEeccCCcc----------cHHHHHHHHHHHHcCCCcc
Q psy10443 151 KIRA------VKYMECSALTQR----------GLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 151 ~~~~------~~~~~~Sa~~~~----------~v~~~~~~l~~~~~~~~~~ 185 (195)
.+++ .|++..|++.|. ++..+|+.|++.+..+...
T Consensus 150 ~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~ 200 (603)
T COG1217 150 ELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGD 200 (603)
T ss_pred HhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCC
Confidence 2222 678999988653 7899999999999888753
No 283
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.48 E-value=2e-14 Score=102.77 Aligned_cols=125 Identities=17% Similarity=0.127 Sum_probs=61.5
Q ss_pred EEEEEeCCCCccccccCCCCC--------CCccEEEEEEeCCChhcHHHHHHhhHHHHh-hhCCCCcEEEEeeCCCcccc
Q psy10443 55 SLGLWDTAGQEDYDRLRPLSY--------PQTDVFLICYSVVSPSSFDNVTSKWYPELK-HHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 55 ~l~~~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~vvv~nK~D~~~~ 125 (195)
...++|||||.++...+...- ...-++++++|+.-..+.......++..+. ...-++|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 356999999987754443322 445688899998644332222111222211 11237999999999999874
Q ss_pred hHhh--hhhhhcCC--------CCccHHHHHHHHHHcCCc-eeEEeccCCcccHHHHHHHHHHHH
Q psy10443 126 RETL--NLLSEQNL--------SPVKREQGQKLANKIRAV-KYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 126 ~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
.... ....+... .....+.+.++...++.. .++.+|+.+++|+.+++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 3111 11111000 001111223333344555 799999999999999999987754
No 284
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.47 E-value=5.8e-13 Score=95.85 Aligned_cols=96 Identities=23% Similarity=0.321 Sum_probs=75.8
Q ss_pred ccccccCCCCCCCccEEEEEEeCCChh-cHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHH
Q psy10443 65 EDYDRLRPLSYPQTDVFLICYSVVSPS-SFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKRE 143 (195)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 143 (195)
+++..+.+.+++++|++++|+|++++. ++..+. +|+..+.. .++|+++|+||+|+..... ...+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~-r~l~~~~~--~~i~~vIV~NK~DL~~~~~------------~~~~ 88 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLD-RFLVVAEA--QNIEPIIVLNKIDLLDDED------------MEKE 88 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHH-HHHHHHHH--CCCCEEEEEECcccCCCHH------------HHHH
Confidence 688888899999999999999999988 777776 58776654 4899999999999975422 2223
Q ss_pred HHHHHHHHcCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 144 QGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 144 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
....+. ..+ .+++++||++|.|++++|..+..
T Consensus 89 ~~~~~~-~~g-~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 89 QLDIYR-NIG-YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHHHHH-HCC-CeEEEEecCCchhHHHHHhhhcC
Confidence 344443 455 68999999999999999988764
No 285
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.46 E-value=4e-12 Score=88.72 Aligned_cols=100 Identities=19% Similarity=0.172 Sum_probs=61.3
Q ss_pred EEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcE--EEEeeCCCcccchHhhhhhh
Q psy10443 56 LGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPI--ILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 56 l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~--vvv~nK~D~~~~~~~~~~~~ 133 (195)
..++++.|........+ . -++.+|.|+|+.+.++.... +.. ++.. ++++||+|+.....
T Consensus 94 ~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~~---~~~-------qi~~ad~~~~~k~d~~~~~~------ 154 (199)
T TIGR00101 94 MVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPRK---GGP-------GITRSDLLVINKIDLAPMVG------ 154 (199)
T ss_pred EEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhhh---hHh-------HhhhccEEEEEhhhcccccc------
Confidence 34667767322222211 1 25889999999876653321 111 2333 88899999975311
Q ss_pred hcCCCCccHHHHHHHHHH-cCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 134 EQNLSPVKREQGQKLANK-IRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
...+...+..+. .+..+++++||++|+|++++++++.+.+.
T Consensus 155 ------~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 155 ------ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred ------ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 112223333333 34478999999999999999999987643
No 286
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.45 E-value=1.6e-12 Score=92.60 Aligned_cols=142 Identities=18% Similarity=0.182 Sum_probs=82.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.++..|+++|.+|+|||||++.+.+..-..... .....+ .+ ......++.++|+||.. .. .....+.+|.+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~-~~~g~i--~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVll 109 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNIS-DIKGPI--TV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLL 109 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccc-cccccE--EE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEEE
Confidence 457889999999999999999998642111000 000001 11 11234456699999853 11 1233578999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcE-EEEeeCCCcccchHhhhhhhhcCCCCccHHHHHH-HHH-HcCCceeEEe
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPI-ILVGTKIDLREDRETLNLLSEQNLSPVKREQGQK-LAN-KIRAVKYMEC 160 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~ 160 (195)
|+|++.....+.. .++..+... +.|. ++++||.|+........ ...++++. +.. .....+++.+
T Consensus 110 viDa~~~~~~~~~--~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~---------~~~~~l~~~~~~~~~~~~ki~~i 176 (225)
T cd01882 110 LIDASFGFEMETF--EFLNILQVH--GFPRVMGVLTHLDLFKKNKTLR---------KTKKRLKHRFWTEVYQGAKLFYL 176 (225)
T ss_pred EEecCcCCCHHHH--HHHHHHHHc--CCCeEEEEEeccccCCcHHHHH---------HHHHHHHHHHHHhhCCCCcEEEE
Confidence 9999865443332 244555443 5675 45999999875422110 01122222 322 2344689999
Q ss_pred ccCCc
Q psy10443 161 SALTQ 165 (195)
Q Consensus 161 Sa~~~ 165 (195)
||++.
T Consensus 177 Sa~~~ 181 (225)
T cd01882 177 SGIVH 181 (225)
T ss_pred eeccC
Confidence 98876
No 287
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.45 E-value=1.4e-12 Score=95.30 Aligned_cols=159 Identities=14% Similarity=0.098 Sum_probs=101.4
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcCCC--C----------CCcccceeec-----------------cceeEEe--
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTDSF--P----------GEYVPTVFDN-----------------YSAPFTV-- 49 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~~~--~----------~~~~~t~~~~-----------------~~~~~~~-- 49 (195)
|+++..++.+-+|.-.-||||||.||+...- . .....+.+.. ++..+.+
T Consensus 1 ~~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRy 80 (431)
T COG2895 1 QQHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRY 80 (431)
T ss_pred CCcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeee
Confidence 4567789999999999999999999988520 0 0000111110 0111111
Q ss_pred -CCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHh
Q psy10443 50 -DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRET 128 (195)
Q Consensus 50 -~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~ 128 (195)
.-.+-++.+-|||||+.|....-.....||++|+++|+-.. ..+.. +-...+.....-..+++.+||+|+...++.
T Consensus 81 FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QT-rRHs~I~sLLGIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 81 FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQT-RRHSFIASLLGIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHh-HHHHHHHHHhCCcEEEEEEeeecccccCHH
Confidence 11223566999999999988777888899999999998543 32222 122233332234678899999999886542
Q ss_pred hhhhhhcCCCCccHHHHHHHHHHcCC--ceeEEeccCCcccHHH
Q psy10443 129 LNLLSEQNLSPVKREQGQKLANKIRA--VKYMECSALTQRGLRQ 170 (195)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~ 170 (195)
... ....+-..|+..++. ..+++.||..|+|+-.
T Consensus 158 ~F~--------~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 158 VFE--------AIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHH--------HHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 221 122345667777764 4589999999999753
No 288
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.43 E-value=7.8e-13 Score=108.75 Aligned_cols=116 Identities=15% Similarity=0.099 Sum_probs=76.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCCCccc-ce-----e------ecc---ceeE--EeCCEEEEEEEEeCCCCc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVP-TV-----F------DNY---SAPF--TVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~-t~-----~------~~~---~~~~--~~~~~~~~l~~~D~~G~~ 65 (195)
+--+|+++|+.++|||||+.+|+... ....... +. . ... ...+ ..++..+.+.|+||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 34589999999999999999997531 1111000 00 0 000 0111 224456778899999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCccc
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 124 (195)
.|.......++.+|++|+|+|+......+... .|...... +.|.++++||+|...
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~-~~~~~~~~---~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTET-VLRQALRE---RVKPVLFINKVDRLI 153 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHH-HHHHHHHc---CCCeEEEEECchhhc
Confidence 98877778889999999999998754333222 24433332 568899999999863
No 289
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.43 E-value=2.9e-12 Score=92.24 Aligned_cols=120 Identities=17% Similarity=0.145 Sum_probs=73.0
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc---c-------C
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR---L-------R 71 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~---~-------~ 71 (195)
..+++|+|+|.+|+|||||+|.+++.... ....+++..........++. .+.+|||||-..... . .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~--~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGF--KLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 35789999999999999999999986532 22333333322333344554 456999999654310 0 1
Q ss_pred CCCCC--CccEEEEEEeCCCh-hcHHHHHHhhHHHHhhhCC-C--CcEEEEeeCCCcccchH
Q psy10443 72 PLSYP--QTDVFLICYSVVSP-SSFDNVTSKWYPELKHHCP-D--APIILVGTKIDLREDRE 127 (195)
Q Consensus 72 ~~~~~--~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~-~--~p~vvv~nK~D~~~~~~ 127 (195)
..++. ..+++++|..++.. .+..+. ..++.+..... + .++++|.||+|...+..
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~--~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDL--PLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHH--HHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 11222 57888888766543 222221 24444443221 1 57999999999976543
No 290
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.42 E-value=4.7e-12 Score=89.43 Aligned_cols=166 Identities=19% Similarity=0.153 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCCCCCc---ccceeeccceeEEeCCEEEEEEEEeCCCCccccc-----------cCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSFPGEY---VPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR-----------LRP 72 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-----------~~~ 72 (195)
++|+++|..|+||||++|.+++....... .+.+.........+++..+. ++||||-..... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~--VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVT--VIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEE--EEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEE--EEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999987543221 12222222344467887666 999999322110 011
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCC---CCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCP---DAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA 149 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (195)
....+.+++++|+.+. +-+..+. ..+..+..... -..++||.|..|...+...+..... ......+.+.
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~--~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~-----~~~~~l~~li 150 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDR--EVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKK-----ESNEALQELI 150 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHH--HHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHH-----HHHHHHHHHH
T ss_pred hccCCCeEEEEEEecC-cchHHHH--HHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhc-----cCchhHhHHh
Confidence 2345789999999987 2222222 12222222211 1368888999987765432211000 0123356677
Q ss_pred HHcCCceeEEeccC------CcccHHHHHHHHHHHHcCCC
Q psy10443 150 NKIRAVKYMECSAL------TQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 150 ~~~~~~~~~~~Sa~------~~~~v~~~~~~l~~~~~~~~ 183 (195)
+..+. .++..+.+ ....+.++++.+-+.+.+..
T Consensus 151 ~~c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 151 EKCGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp HHTTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhcCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 77774 67766666 34567888888777665543
No 291
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.41 E-value=1.7e-12 Score=94.91 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=69.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc-------CCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL-------RPLS 74 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~-------~~~~ 74 (195)
...++|+++|.+|+||||++|++++.... ....+++..........++ ..+.++||||....... ...+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 35789999999999999999999987532 2222222111122233455 45669999996543211 1111
Q ss_pred C--CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCC---CCcEEEEeeCCCcccc
Q psy10443 75 Y--PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCP---DAPIILVGTKIDLRED 125 (195)
Q Consensus 75 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~vvv~nK~D~~~~ 125 (195)
+ ...|++++|..++.. .+.......+..+...+. -.+++++.|++|...+
T Consensus 114 l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred hhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 1 268999999665432 121111123333333221 2578999999997754
No 292
>KOG3886|consensus
Probab=99.41 E-value=7.4e-13 Score=91.39 Aligned_cols=164 Identities=19% Similarity=0.268 Sum_probs=100.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCC---CcccceeeccceeEEeCCEEEEEEEEeCCCCccc-----cccCCCCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPG---EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDY-----DRLRPLSYPQ 77 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~-----~~~~~~~~~~ 77 (195)
.-||+++|.+|+||||+-..++.+.... ...+|.....+...... +..+++||.+||+.+ .......+++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG--nl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG--NLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh--hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 3489999999999999988877544221 11122222222211122 256779999999854 2345667889
Q ss_pred ccEEEEEEeCCChhcHHHHHH--hhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 78 TDVFLICYSVVSPSSFDNVTS--KWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~--~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
.+++++|+|++..+-..+... ..++.+.++.|...+++..+|.|+.+.+..+.... ...+.........+ +
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~------~r~~~l~~~s~~~~-~ 154 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQ------RRKEDLRRLSRPLE-C 154 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHH------HHHHHHHHhccccc-c
Confidence 999999999998765555442 35567777889999999999999988765333211 01112222222233 5
Q ss_pred eeEEeccCCcccHHHHHHHHHHHH
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
.++++|.-+ +.+-+++..+...+
T Consensus 155 ~~f~TsiwD-etl~KAWS~iv~~l 177 (295)
T KOG3886|consen 155 KCFPTSIWD-ETLYKAWSSIVYNL 177 (295)
T ss_pred cccccchhh-HHHHHHHHHHHHhh
Confidence 566766553 33444455544443
No 293
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.41 E-value=5.2e-13 Score=111.05 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=79.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCCccccee---------------eccceeEEe--------------CCE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVF---------------DNYSAPFTV--------------DGI 52 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~---------------~~~~~~~~~--------------~~~ 52 (195)
.+-.||+|+|+.++|||||+.+|+... .......++. ......+.+ ++.
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 345699999999999999999987632 1111000000 000011112 123
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
.+.++++|+|||..|.......++.+|++|+|+|+.+.-..+... .|...... ++|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~~~~~---~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALGE---RIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHHHHHC---CCCEEEEEECCccc
Confidence 577889999999999888888889999999999998765444332 34444333 78999999999987
No 294
>KOG0705|consensus
Probab=99.41 E-value=6.3e-13 Score=101.92 Aligned_cols=164 Identities=23% Similarity=0.361 Sum_probs=127.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
-.++|+.|+|..++|||+|+++++.+.+..+ ....+..+...+.+++....+.+.|.+|... .+|...+|++||
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~-e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQD-ESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccc-cCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 4678999999999999999999998877543 3344666677888889998989999988543 457778999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHH--CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
|+.+.+..+++.+.. +...+..+ ...+|+++++++.-...... +.+.+.+.+.++.....+.+++++
T Consensus 102 vf~~~d~~s~q~v~~-l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~----------rv~~da~~r~l~~~~krcsy~et~ 170 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQA-LAHEMSSYRNISDLPLILVGTQDHISAKRP----------RVITDDRARQLSAQMKRCSYYETC 170 (749)
T ss_pred EEEeccccCHHHHHH-HHhhcccccccccchHHhhcCcchhhcccc----------cccchHHHHHHHHhcCccceeecc
Confidence 999999999998874 33333322 35688888887765543332 556677777777777778999999
Q ss_pred cCCcccHHHHHHHHHHHHcCCCc
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
+.+|.++..+|+.+...+...+.
T Consensus 171 atyGlnv~rvf~~~~~k~i~~~~ 193 (749)
T KOG0705|consen 171 ATYGLNVERVFQEVAQKIVQLRK 193 (749)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999988765543
No 295
>KOG1144|consensus
Probab=99.39 E-value=8.9e-13 Score=104.28 Aligned_cols=174 Identities=17% Similarity=0.220 Sum_probs=106.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCccccee----eccceeEEe---------CCE---E-EEEEEEeCCCCccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVF----DNYSAPFTV---------DGI---P-VSLGLWDTAGQEDY 67 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~----~~~~~~~~~---------~~~---~-~~l~~~D~~G~~~~ 67 (195)
+..-+||+|+-.+|||-|+..+.+........+... .++.....+ ++. . =.+.++|||||+.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 345689999999999999999988544322222221 111110000 111 1 13669999999999
Q ss_pred cccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc-----hHhhhhhhhcCCCCccH
Q psy10443 68 DRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED-----RETLNLLSEQNLSPVKR 142 (195)
Q Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~-----~~~~~~~~~~~~~~~~~ 142 (195)
..++......||.+|+|+|+...-.-+.+. -+.+++.. +.|+||.+||+|.... +.......-.+...+..
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiE--Si~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~ 629 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIE--SINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN 629 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhH--HHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence 999999999999999999997653333333 33455544 7999999999997631 11111100010011100
Q ss_pred -------HHHHHHHHH-c------------CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 143 -------EQGQKLANK-I------------RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 143 -------~~~~~~~~~-~------------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
.-+.+|+.. + ..+.++++||.+|+|+-+++.+|++.....
T Consensus 630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 011122111 0 125689999999999999999998876543
No 296
>KOG1707|consensus
Probab=99.39 E-value=2.1e-11 Score=94.38 Aligned_cols=162 Identities=22% Similarity=0.307 Sum_probs=114.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecc-ceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNY-SAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
+-++..|+|++++|||.+++.+.++.+..++..+....+ ...+...+....+.+-|.+-. ....+...- ..||++.+
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~ 501 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACL 501 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEE
Confidence 458999999999999999999999888765555553333 233444577777778887754 222222222 78999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
+||.+++.++..... ........ ...|+++|++|+|+.+... ...... .+++++++..+.+..|.+
T Consensus 502 ~YDsS~p~sf~~~a~-v~~~~~~~-~~~Pc~~va~K~dlDe~~Q-----------~~~iqp-de~~~~~~i~~P~~~S~~ 567 (625)
T KOG1707|consen 502 VYDSSNPRSFEYLAE-VYNKYFDL-YKIPCLMVATKADLDEVPQ-----------RYSIQP-DEFCRQLGLPPPIHISSK 567 (625)
T ss_pred ecccCCchHHHHHHH-HHHHhhhc-cCCceEEEeeccccchhhh-----------ccCCCh-HHHHHhcCCCCCeeeccC
Confidence 999999999998764 22222222 5899999999999976532 111122 778999987667778887
Q ss_pred CcccHHHHHHHHHHHHcCCC
Q psy10443 164 TQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~~~~ 183 (195)
..-. .++|..|..+...+.
T Consensus 568 ~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 568 TLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred CCCC-chHHHHHHHhhhCCC
Confidence 5223 799999998776655
No 297
>KOG0461|consensus
Probab=99.39 E-value=1.2e-11 Score=90.47 Aligned_cols=172 Identities=16% Similarity=0.159 Sum_probs=107.0
Q ss_pred CCC-CcceEEEEEcCCCCchHHHHHHhhcCC----CCCCcccceee-----cccee------EEeCCEEEEEEEEeCCCC
Q psy10443 1 MSS-GRPIKCVVVGDGTVGKTCMLISYTTDS----FPGEYVPTVFD-----NYSAP------FTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 1 m~~-~~~~~i~v~G~~~~GKtsli~~l~~~~----~~~~~~~t~~~-----~~~~~------~~~~~~~~~l~~~D~~G~ 64 (195)
|.+ ...+|+.++|.-.+|||||.+++..-. |..+..+++.. .++.- .-..+.+..+.+.|+|||
T Consensus 1 m~~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH 80 (522)
T KOG0461|consen 1 MTSPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH 80 (522)
T ss_pred CCCCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc
Confidence 544 457999999999999999999997632 32222222211 11110 112456677889999999
Q ss_pred ccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
...-........-.|..++|+|+.....-+.++...+..+. -...++|+||+|...+..+... ..+.
T Consensus 81 asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr~sk---------i~k~ 147 (522)
T KOG0461|consen 81 ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQRASK---------IEKS 147 (522)
T ss_pred HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhhhhH---------HHHH
Confidence 76433333333345889999999876554444432233332 2356888899998765432111 1112
Q ss_pred HHHHHHHc------CCceeEEeccCCc----ccHHHHHHHHHHHHcCCCcc
Q psy10443 145 GQKLANKI------RAVKYMECSALTQ----RGLRQVFDEAVRAVLRPEPV 185 (195)
Q Consensus 145 ~~~~~~~~------~~~~~~~~Sa~~~----~~v~~~~~~l~~~~~~~~~~ 185 (195)
.....+.+ +..|++++||..| +++.++.+.|.+.+..+++.
T Consensus 148 ~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd 198 (522)
T KOG0461|consen 148 AKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD 198 (522)
T ss_pred HHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC
Confidence 22222222 3378999999999 88889998888888877654
No 298
>PTZ00258 GTP-binding protein; Provisional
Probab=99.37 E-value=2.4e-11 Score=92.18 Aligned_cols=84 Identities=19% Similarity=0.164 Sum_probs=56.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCE---------------EEEEEEEeCCCCcccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGI---------------PVSLGLWDTAGQEDYD 68 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~~~D~~G~~~~~ 68 (195)
..++|.++|.||||||||+|.|++... ..+++.|+.......+.+.+. ...+.++|+||-..-.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 457999999999999999999988643 355666664443444443322 2347799999943221
Q ss_pred c----c---CCCCCCCccEEEEEEeCC
Q psy10443 69 R----L---RPLSYPQTDVFLICYSVV 88 (195)
Q Consensus 69 ~----~---~~~~~~~~d~~i~v~d~~ 88 (195)
+ + ....++++|++++|+|+.
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 1 112356899999999984
No 299
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.37 E-value=1.4e-11 Score=91.79 Aligned_cols=107 Identities=13% Similarity=0.117 Sum_probs=66.2
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhh
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 133 (195)
+.+.|+||+|-..-... ....+|.++++.+....+.++.... ..+. ..-++|+||+|+........
T Consensus 149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~--- 214 (332)
T PRK09435 149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARR--- 214 (332)
T ss_pred CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHH---
Confidence 55779999996532221 4567999999977555555544321 1111 12379999999876432111
Q ss_pred hcCCCCccHHHHHHHHHH------cCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 134 EQNLSPVKREQGQKLANK------IRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
...+....... .+..+++.+||+++.|++++++.|.+.+..
T Consensus 215 -------~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 215 -------AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred -------HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 01112211111 122579999999999999999999997653
No 300
>PTZ00416 elongation factor 2; Provisional
Probab=99.37 E-value=2e-12 Score=107.44 Aligned_cols=115 Identities=16% Similarity=0.144 Sum_probs=77.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC--CCCCccccee------ecc---------ceeEEeC--------CEEEEEEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS--FPGEYVPTVF------DNY---------SAPFTVD--------GIPVSLGLW 59 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~------~~~---------~~~~~~~--------~~~~~l~~~ 59 (195)
+..||+++|+.++|||||+++|+... .......++. ... ...+.++ +..+.+.|+
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 44599999999999999999998631 1111110100 000 0111222 225678899
Q ss_pred eCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 60 DTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 60 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
||||+.+|.......++.+|++|+|+|+.+.-..+... .|. .+... ++|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~-~~~-~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTET-VLR-QALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHH-HHH-HHHHc--CCCEEEEEEChhhh
Confidence 99999998877788889999999999998764433322 243 33333 68999999999997
No 301
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.35 E-value=1.9e-12 Score=97.11 Aligned_cols=167 Identities=14% Similarity=0.211 Sum_probs=79.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC-CCcccce--eeccc-eeEEeCCEEEEEEEEeCCCCccccccC-----CCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP-GEYVPTV--FDNYS-APFTVDGIPVSLGLWDTAGQEDYDRLR-----PLSY 75 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~--~~~~~-~~~~~~~~~~~l~~~D~~G~~~~~~~~-----~~~~ 75 (195)
.+++|+|+|++|+|||||||.|.+-.-. +...+|. +.... ..+..... =.+.+||+||-.....-. ..-+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 4789999999999999999999873221 1112221 11111 11111111 134599999953322111 1234
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccH----HHHHHHHHH
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR----EQGQKLANK 151 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 151 (195)
...|.+|++.+ +.+....-.+...+... +.|+.+|-+|.|..=..+.. ..++.... +++++.+.+
T Consensus 113 ~~yD~fiii~s----~rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~-----~~p~~f~~e~~L~~IR~~c~~ 181 (376)
T PF05049_consen 113 YRYDFFIIISS----ERFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERR-----RKPRTFNEEKLLQEIRENCLE 181 (376)
T ss_dssp GG-SEEEEEES----SS--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHC-----C-STT--HHTHHHHHHHHHHH
T ss_pred cccCEEEEEeC----CCCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhc-----cCCcccCHHHHHHHHHHHHHH
Confidence 56798888766 23433332355556655 78999999999962111100 00111221 223333332
Q ss_pred ------cCCceeEEeccCC--cccHHHHHHHHHHHHcCCC
Q psy10443 152 ------IRAVKYMECSALT--QRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 152 ------~~~~~~~~~Sa~~--~~~v~~~~~~l~~~~~~~~ 183 (195)
....++|.+|+.+ ..+...+.+.|.+.+...+
T Consensus 182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred HHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 1335789999887 3557777777777666554
No 302
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.33 E-value=2.1e-11 Score=89.27 Aligned_cols=118 Identities=18% Similarity=0.252 Sum_probs=69.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCc---c-------cce-eeccceeEEeCCEEEEEEEEeCCCCcccc------
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEY---V-------PTV-FDNYSAPFTVDGIPVSLGLWDTAGQEDYD------ 68 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~---~-------~t~-~~~~~~~~~~~~~~~~l~~~D~~G~~~~~------ 68 (195)
.++|+|+|.+|+|||||++.|++....... . .+. .........-++..+.+.++||||-....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999986543221 0 111 11112344457888999999999922111
Q ss_pred -------------------ccCCCCC--CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchH
Q psy10443 69 -------------------RLRPLSY--PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127 (195)
Q Consensus 69 -------------------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 127 (195)
...+... ...|+++++++.+.. .+..+.-..+..+. ..+++|-|+.|+|.....+
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls---~~vNvIPvIaKaD~lt~~e 159 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS---KRVNVIPVIAKADTLTPEE 159 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT---TTSEEEEEESTGGGS-HHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc---ccccEEeEEecccccCHHH
Confidence 0111111 146899999998753 22222212334444 4689999999999987654
No 303
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.32 E-value=7.1e-11 Score=88.99 Aligned_cols=152 Identities=15% Similarity=0.182 Sum_probs=89.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC----CCC-------------CCccc----ceeeccc--eeEE---eCCEEEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD----SFP-------------GEYVP----TVFDNYS--APFT---VDGIPVSLGLW 59 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~----~~~-------------~~~~~----t~~~~~~--~~~~---~~~~~~~l~~~ 59 (195)
.+-|.|+|+.++|||||+++|.+. ... ....+ |+...+- .... .++....+.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 578999999999999999999986 221 12222 2222220 1112 24556778899
Q ss_pred eCCCCccc--------cc------c---------------CCCCCC-CccEEEEEE-eCC----ChhcHHHHHHhhHHHH
Q psy10443 60 DTAGQEDY--------DR------L---------------RPLSYP-QTDVFLICY-SVV----SPSSFDNVTSKWYPEL 104 (195)
Q Consensus 60 D~~G~~~~--------~~------~---------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~~~~~ 104 (195)
|++|-..- .. - +...+. .++..|+|. |.+ .++.+.+....+...+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 99982211 00 0 111233 578888887 654 2345666666788888
Q ss_pred hhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC--cccHHHHHHH
Q psy10443 105 KHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT--QRGLRQVFDE 174 (195)
Q Consensus 105 ~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~v~~~~~~ 174 (195)
+.. ++|+++++|++|-..+. ..+....+..+++ ++++.+|... .+.+..+++.
T Consensus 177 k~~--~kPfiivlN~~dp~~~e--------------t~~l~~~l~eky~-vpvl~v~c~~l~~~DI~~il~~ 231 (492)
T TIGR02836 177 KEL--NKPFIILLNSTHPYHPE--------------TEALRQELEEKYD-VPVLAMDVESMRESDILSVLEE 231 (492)
T ss_pred Hhc--CCCEEEEEECcCCCCch--------------hHHHHHHHHHHhC-CceEEEEHHHcCHHHHHHHHHH
Confidence 876 89999999999944321 1222334455566 5666655442 3334444443
No 304
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.31 E-value=3.8e-11 Score=84.60 Aligned_cols=152 Identities=14% Similarity=0.065 Sum_probs=82.8
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCC--------C----Ccccceeeccc-eeEEe-CC------------------
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFP--------G----EYVPTVFDNYS-APFTV-DG------------------ 51 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~--------~----~~~~t~~~~~~-~~~~~-~~------------------ 51 (195)
.....|+++|..|+|||||++++...... . ..+........ ....+ ++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 34678999999999999999998764110 0 00000000000 00000 00
Q ss_pred -EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhh
Q psy10443 52 -IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLN 130 (195)
Q Consensus 52 -~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~ 130 (195)
....+.+.++.|.-... ..+....+..+.|+|+.+.+..... .... .+.|.++++||+|+.....
T Consensus 100 ~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~~---~~~~-----~~~a~iiv~NK~Dl~~~~~--- 165 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPLK---YPGM-----FKEADLIVINKADLAEAVG--- 165 (207)
T ss_pred cCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhhh---hHhH-----HhhCCEEEEEHHHccccch---
Confidence 12345567777721100 1111234555678888765432111 1111 1457799999999975321
Q ss_pred hhhhcCCCCccHHHHHHHHH-HcCCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 131 LLSEQNLSPVKREQGQKLAN-KIRAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
....+..+..+ ..+..+++++||+++.|++++++++.+.
T Consensus 166 ---------~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 166 ---------FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred ---------hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 11122222222 2344789999999999999999999874
No 305
>KOG3887|consensus
Probab=99.30 E-value=6e-11 Score=82.76 Aligned_cols=172 Identities=11% Similarity=0.154 Sum_probs=102.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc---CCCCCCCccEEEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL---RPLSYPQTDVFLIC 84 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~---~~~~~~~~d~~i~v 84 (195)
+|+++|...+||||+....+....+.+.........-..-.+.+.-+.+++||+|||-.+-.- ....++++.++|+|
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifv 108 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFV 108 (347)
T ss_pred eEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEEE
Confidence 499999999999999988877644332111111100011122335578899999998665322 12347789999999
Q ss_pred EeCCChhcHHHHHHhhHHHHhhh---CCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 85 YSVVSPSSFDNVTSKWYPELKHH---CPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+|+- +.+.++...+...+.+. ++++.+=+.++|.|-..++...+...+..-+ ..++........-.+.++.+|
T Consensus 109 IDaQ--ddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr--~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 109 IDAQ--DDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQR--TNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred Eech--HHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHH--hhHHHHhhhhccceEEEEEee
Confidence 9965 33444433343344332 6889999999999988766543322222111 111222222222114566666
Q ss_pred cCCcccHHHHHHHHHHHHcCCCc
Q psy10443 162 ALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 162 a~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
.. .+.+-++|..+++.+.+.-+
T Consensus 185 Iy-DHSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 185 IY-DHSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred ec-chHHHHHHHHHHHHHhhhch
Confidence 65 55689999999988876544
No 306
>KOG0082|consensus
Probab=99.29 E-value=9.8e-11 Score=86.92 Aligned_cols=128 Identities=15% Similarity=0.219 Sum_probs=82.5
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcH----------HHHHHhhHHHHhhh--CCCCcEEEEeeCCC
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSF----------DNVTSKWYPELKHH--CPDAPIILVGTKID 121 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~----------~~~~~~~~~~~~~~--~~~~p~vvv~nK~D 121 (195)
..+.++|++||..-+.-|.+++.+++++|||+++++-+-. .+... +...+-.. ..+.++++++||.|
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~-LF~sI~n~~~F~~tsiiLFLNK~D 273 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLK-LFESICNNKWFANTSIILFLNKKD 273 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHH-HHHHHhcCcccccCcEEEEeecHH
Confidence 3466999999999899999999999999999999863221 12221 22222222 46899999999999
Q ss_pred cccchHhhhhh----hhcCCCCccHHHHHHHHH-----Hc----CCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 122 LREDRETLNLL----SEQNLSPVKREQGQKLAN-----KI----RAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 122 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
+.+..-..... .+-... ...+++..+.. -+ ..+-+..+.|.+-.+|+.+|..+.+.+...+
T Consensus 274 LFeEKi~~~~~~~~Fpdy~G~-~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 274 LFEEKIKKVPLTDCFPDYKGV-NTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred HHHHHhccCchhhhCcCCCCC-CChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 97644211111 111111 22333332222 11 2245667899999999999999999887554
No 307
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=5.6e-11 Score=85.13 Aligned_cols=170 Identities=16% Similarity=0.170 Sum_probs=108.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC---CC---CCCcc-----------cceeeccceeEEeCCEEEEEEEEeCCCCcc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD---SF---PGEYV-----------PTVFDNYSAPFTVDGIPVSLGLWDTAGQED 66 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~---~~---~~~~~-----------~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~ 66 (195)
+..+||..+|.-+.|||||...++.- .. ...|+ ..+.......+....+.|. ..|+|||..
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhya--hVDcPGHaD 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYA--HVDCPGHAD 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEE--eccCCChHH
Confidence 56899999999999999999877652 00 00111 1111122234445566666 999999999
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHH
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQG 145 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (195)
|-........++|+.|+|++++|..--+... +. ...+.. ++| +++++||+|+.++.+..+ .-..+.
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrE-Hi-Llarqv--Gvp~ivvflnK~Dmvdd~elle---------lVemEv 154 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTRE-HI-LLARQV--GVPYIVVFLNKVDMVDDEELLE---------LVEMEV 154 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchh-hh-hhhhhc--CCcEEEEEEecccccCcHHHHH---------HHHHHH
Confidence 8766666667899999999999854333322 11 111221 554 566679999998665433 233456
Q ss_pred HHHHHHcCC----ceeEEeccCC--------cccHHHHHHHHHHHHcCCCccccC
Q psy10443 146 QKLANKIRA----VKYMECSALT--------QRGLRQVFDEAVRAVLRPEPVKRR 188 (195)
Q Consensus 146 ~~~~~~~~~----~~~~~~Sa~~--------~~~v~~~~~~l~~~~~~~~~~~~~ 188 (195)
+++...++. .|++.-||.. ...+.++++.+.+.+..+.+...+
T Consensus 155 reLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~dk 209 (394)
T COG0050 155 RELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDIDK 209 (394)
T ss_pred HHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcccc
Confidence 777777753 4566666553 123678888888888887776554
No 308
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.28 E-value=2.1e-11 Score=83.10 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=42.8
Q ss_pred EEEEeCCCCcc----ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCC
Q psy10443 56 LGLWDTAGQED----YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120 (195)
Q Consensus 56 l~~~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~ 120 (195)
+.|+|+||-.. ....+..++..+|++|+|.+++...+..+.. .+.+..... ...+++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTTT--CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcCC--CCeEEEEEcCC
Confidence 77999999532 2355667789999999999999866555443 355555544 33488888984
No 309
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.27 E-value=2.4e-10 Score=85.82 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=56.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEE---------------EEEEEEeCCCCccccc-
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIP---------------VSLGLWDTAGQEDYDR- 69 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~~~D~~G~~~~~~- 69 (195)
++|.++|.||||||||+++|++... ..+++.|+.......+.+.+.. ..+.+.|+||-..-.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 7899999999999999999998653 3456666644433343433321 2477999999532211
Q ss_pred ---c---CCCCCCCccEEEEEEeCC
Q psy10443 70 ---L---RPLSYPQTDVFLICYSVV 88 (195)
Q Consensus 70 ---~---~~~~~~~~d~~i~v~d~~ 88 (195)
+ ....++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 122367899999999984
No 310
>KOG1143|consensus
Probab=99.26 E-value=5e-11 Score=88.11 Aligned_cols=163 Identities=15% Similarity=0.204 Sum_probs=102.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc------------------------eeEEeC----------C
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS------------------------APFTVD----------G 51 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~------------------------~~~~~~----------~ 51 (195)
+++++|+|.-.+|||||+..|+++.............+. ..+.+. .
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 579999999999999999999887543211111111000 011111 1
Q ss_pred EEEEEEEEeCCCCccccccCCCCCC--CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhh
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYP--QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETL 129 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~ 129 (195)
..-.+.|+|++|+.+|...+-+.+. ..|...+|+++.....+..-+ .+..+... ++|++++++|+|+.......
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrE--HLgl~~AL--~iPfFvlvtK~Dl~~~~~~~ 322 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTRE--HLGLIAAL--NIPFFVLVTKMDLVDRQGLK 322 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHH--HHHHHHHh--CCCeEEEEEeeccccchhHH
Confidence 1234679999999999877666555 368888999987765554432 45555554 89999999999998874443
Q ss_pred hhhhhcC------------CCCccHHHHHHHHHHc---CCceeEEeccCCcccHHHHH
Q psy10443 130 NLLSEQN------------LSPVKREQGQKLANKI---RAVKYMECSALTQRGLRQVF 172 (195)
Q Consensus 130 ~~~~~~~------------~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~ 172 (195)
....+.. .+.-+.+++...+++. ..+|+|.+|+.+|+|++-+.
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 3322221 1222333443333332 33789999999999987553
No 311
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=8.5e-11 Score=88.54 Aligned_cols=157 Identities=17% Similarity=0.048 Sum_probs=101.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCC---C-CcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEE
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFP---G-EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLI 83 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~---~-~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (195)
.|.-.|.-..|||||+..+++..-. + ....++.+.-.. ..+-..+.+.|+|.||++++-...-..+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~--y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFY--YRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeE--eccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 4778899999999999999985321 1 111222221111 122223477899999999988777777788999999
Q ss_pred EEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 84 CYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
|+++++.-..+..+ .+..+.-. .....++|+||+|..++...+. ...+-..... +...+++.+|++
T Consensus 80 vV~~deGl~~qtgE--hL~iLdll-gi~~giivltk~D~~d~~r~e~---------~i~~Il~~l~--l~~~~i~~~s~~ 145 (447)
T COG3276 80 VVAADEGLMAQTGE--HLLILDLL-GIKNGIIVLTKADRVDEARIEQ---------KIKQILADLS--LANAKIFKTSAK 145 (447)
T ss_pred EEeCccCcchhhHH--HHHHHHhc-CCCceEEEEeccccccHHHHHH---------HHHHHHhhcc--cccccccccccc
Confidence 99997654443332 22222222 1234589999999987532211 1111111112 445678999999
Q ss_pred CcccHHHHHHHHHHHHc
Q psy10443 164 TQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 164 ~~~~v~~~~~~l~~~~~ 180 (195)
+|+|++++.+.|.+...
T Consensus 146 ~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 146 TGRGIEELKNELIDLLE 162 (447)
T ss_pred cCCCHHHHHHHHHHhhh
Confidence 99999999999999885
No 312
>KOG0458|consensus
Probab=99.24 E-value=2e-10 Score=89.02 Aligned_cols=156 Identities=16% Similarity=0.144 Sum_probs=95.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC--------------------CCCCCcccce----ee---cc---ceeEEeCCEEE
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD--------------------SFPGEYVPTV----FD---NY---SAPFTVDGIPV 54 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~--------------------~~~~~~~~t~----~~---~~---~~~~~~~~~~~ 54 (195)
..+..+|+|.-.+|||||+.+++.. ...-.|..+. +. .+ .....++....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 4689999999999999999988763 0111111111 00 00 12233445556
Q ss_pred EEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHH-------HHHhhHHHHhhhCCCCcEEEEeeCCCcccchH
Q psy10443 55 SLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDN-------VTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127 (195)
Q Consensus 55 ~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 127 (195)
.+.+.|+|||..|..........+|++++|+|++-. .|+. .. .....++.. .-..++|++||+|+..=+.
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtr-Eha~llr~L-gi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTR-EHALLLRSL-GISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchH-HHHHHHHHc-CcceEEEEeecccccCccH
Confidence 778999999999988877888899999999999742 1211 11 111222222 2357889999999986432
Q ss_pred hhhhhhhcCCCCccHHHHHHHH-HHcCC----ceeEEeccCCcccHHHH
Q psy10443 128 TLNLLSEQNLSPVKREQGQKLA-NKIRA----VKYMECSALTQRGLRQV 171 (195)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~v~~~ 171 (195)
.... ........|. +..+. +.|+++|+.+|+|+-..
T Consensus 333 ~RF~--------eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 333 DRFE--------EIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHH--------HHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 1110 1122333444 22222 57999999999997544
No 313
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.24 E-value=5.6e-11 Score=80.49 Aligned_cols=83 Identities=16% Similarity=0.049 Sum_probs=55.1
Q ss_pred CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH-cCCc
Q psy10443 77 QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK-IRAV 155 (195)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 155 (195)
..+.-|+|+|++..+.... +-...+.. .=++|+||.|+++.-. .+.+...+.+++ .+..
T Consensus 117 ~d~~~v~VidvteGe~~P~---K~gP~i~~-----aDllVInK~DLa~~v~------------~dlevm~~da~~~np~~ 176 (202)
T COG0378 117 GDHLRVVVIDVTEGEDIPR---KGGPGIFK-----ADLLVINKTDLAPYVG------------ADLEVMARDAKEVNPEA 176 (202)
T ss_pred hhceEEEEEECCCCCCCcc---cCCCceeE-----eeEEEEehHHhHHHhC------------ccHHHHHHHHHHhCCCC
Confidence 3448889999987654321 10111111 2278899999988633 334555555554 3557
Q ss_pred eeEEeccCCcccHHHHHHHHHHHH
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
+++.+|+++|+|+++++.++....
T Consensus 177 ~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 177 PIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred CEEEEeCCCCcCHHHHHHHHHhhc
Confidence 899999999999999999987653
No 314
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=3.8e-11 Score=97.04 Aligned_cols=117 Identities=21% Similarity=0.157 Sum_probs=83.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCC--C-cccc-eee----------cc---ceeEEeCCEEEEEEEEeCCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPG--E-YVPT-VFD----------NY---SAPFTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~--~-~~~t-~~~----------~~---~~~~~~~~~~~~l~~~D~~G~ 64 (195)
++--||.++|+-++||||+..+++... ... + ...+ ..+ ++ ...+.+.+ .++++++|||||
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGH 86 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGH 86 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCc
Confidence 456799999999999999999986631 111 0 1000 000 00 11233343 477889999999
Q ss_pred ccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
-+|.......++-+|++++|+|+.+.-..+.-. .|.+..+. ++|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEt-v~rqa~~~---~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTET-VWRQADKY---GVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHH-HHHHHhhc---CCCeEEEEECcccccc
Confidence 999999999999999999999998764444333 37666665 7999999999998743
No 315
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2.4e-10 Score=85.99 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=77.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc--CCCC-------------CCcccce---eeccc---eeEEeCCEEEEEEEEeCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT--DSFP-------------GEYVPTV---FDNYS---APFTVDGIPVSLGLWDTAG 63 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~--~~~~-------------~~~~~t~---~~~~~---~~~~~~~~~~~l~~~D~~G 63 (195)
+.-..+|+-.|.+|||||-.+|+- +.+. ...++.. ...++ .....+-....+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 445678999999999999988653 2110 0011111 00111 1222233345677999999
Q ss_pred CccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
|+.|..-+...+..+|.+++|+|+...---+.. ++....+.. ++|++-.+||.|....
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfeVcrlR--~iPI~TFiNKlDR~~r 148 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFEVCRLR--DIPIFTFINKLDREGR 148 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHHH--HHHHHHhhc--CCceEEEeeccccccC
Confidence 999998888888899999999998765333333 355555544 8999999999998643
No 316
>KOG1486|consensus
Probab=99.18 E-value=2.7e-09 Score=75.09 Aligned_cols=89 Identities=16% Similarity=0.193 Sum_probs=66.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccc-------cCCCCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR-------LRPLSYP 76 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-------~~~~~~~ 76 (195)
-.-+|+++|.|.+|||||+..++.... ...|..|+-........++|..+. +.|+||--+-.+ ..-...+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQ--llDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQ--LLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEE--EecCcccccccccCCCCCceEEEEee
Confidence 356999999999999999999987543 456777887777788888887766 999998432211 1123456
Q ss_pred CccEEEEEEeCCChhcHHH
Q psy10443 77 QTDVFLICYSVVSPSSFDN 95 (195)
Q Consensus 77 ~~d~~i~v~d~~~~~s~~~ 95 (195)
.+|.+++|.|++..+.-..
T Consensus 139 taDlilMvLDatk~e~qr~ 157 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQRE 157 (364)
T ss_pred cccEEEEEecCCcchhHHH
Confidence 7999999999987654443
No 317
>KOG0468|consensus
Probab=99.17 E-value=8.1e-11 Score=92.51 Aligned_cols=116 Identities=20% Similarity=0.249 Sum_probs=82.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcc---------cceeecc-------ceeE-----EeCCEEEEEEEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYV---------PTVFDNY-------SAPF-----TVDGIPVSLGLWDTA 62 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~---------~t~~~~~-------~~~~-----~~~~~~~~l~~~D~~ 62 (195)
..-.++.++|.-++|||+|+..|.....+.-.. .+..... ..+. ..+++.+.+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 345799999999999999999998764322111 1110000 0011 125777889999999
Q ss_pred CCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 63 GQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
||-.|.......++.+|++++|+|+.+.-.+..-. .+.+.+.. +.|+++++||.|..
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-~ikhaiq~---~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-IIKHAIQN---RLPIVVVINKVDRL 262 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-HHHHHHhc---cCcEEEEEehhHHH
Confidence 99999998899999999999999998776654332 12233333 79999999999975
No 318
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.15 E-value=7.1e-10 Score=82.40 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=62.8
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhh
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLL 132 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~ 132 (195)
.+.+.|+||+|..... ......+|.++++.... +..++.. ....+ .+.|.++++||+|+..........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~-~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQG-IKAGL----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHH-HHHHH----hhhccEEEEEcccccchhHHHHHH
Confidence 3567799999843211 22455678888775433 3333332 22222 256789999999987653210000
Q ss_pred hhcCCCCccHHHHHHHHHH--cCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 133 SEQNLSPVKREQGQKLANK--IRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
... ......+... .+..+++.+||+++.|++++++++.+...
T Consensus 195 ~~~------~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LML------ALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHH------HHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 000 0000111111 11246899999999999999999988643
No 319
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.14 E-value=2e-10 Score=79.93 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=65.6
Q ss_pred ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH
Q psy10443 67 YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ 146 (195)
Q Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (195)
+..++..+++++|++++|+|++++... |...+.....+.|+++|+||+|+.... ...+...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~~~~~~~ilV~NK~Dl~~~~-------------~~~~~~~ 84 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLFGGNNPVILVGNKIDLLPKD-------------KNLVRIK 84 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHhcCCCcEEEEEEchhcCCCC-------------CCHHHHH
Confidence 466778889999999999999876421 222222223468999999999986432 1122233
Q ss_pred HHH-----HHcC--CceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 147 KLA-----NKIR--AVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 147 ~~~-----~~~~--~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
.+. ...+ ...++.+||+++.|++++++.|.+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 85 NWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 332 2222 125899999999999999999998774
No 320
>PRK00098 GTPase RsgA; Reviewed
Probab=99.12 E-value=4.5e-10 Score=83.30 Aligned_cols=86 Identities=20% Similarity=0.202 Sum_probs=64.3
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
..++|.+++|+|+++++......+.|+..+.. .++|+++|+||+|+..... ...+...+.+..+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~-------------~~~~~~~~~~~~g- 141 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLE-------------EARELLALYRAIG- 141 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHH-------------HHHHHHHHHHHCC-
Confidence 58999999999999887766655567766654 3799999999999963321 1122334445555
Q ss_pred ceeEEeccCCcccHHHHHHHHH
Q psy10443 155 VKYMECSALTQRGLRQVFDEAV 176 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~ 176 (195)
.+++.+||+++.|+++++..+.
T Consensus 142 ~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 142 YDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred CeEEEEeCCCCccHHHHHhhcc
Confidence 6899999999999999998764
No 321
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.11 E-value=4.5e-10 Score=81.81 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=39.2
Q ss_pred CcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH-HHHHHcCCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 111 APIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ-KLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 111 ~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
.+-++|+||+|+..... ...+... .+....+..+++.+|+++|+|+++++++|.+.
T Consensus 231 ~ADIVVLNKiDLl~~~~------------~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLN------------FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccH------------HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999975311 1122222 23333455789999999999999999999763
No 322
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.10 E-value=7.3e-10 Score=79.11 Aligned_cols=69 Identities=19% Similarity=0.138 Sum_probs=43.8
Q ss_pred EEEEEeCCCCccc-------------cccCCCCCC-CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCC
Q psy10443 55 SLGLWDTAGQEDY-------------DRLRPLSYP-QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120 (195)
Q Consensus 55 ~l~~~D~~G~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~ 120 (195)
.+.++|+||-... ..+...|++ ..+.+++|+|++..-.-++.. .+...+... +.|+++|+||.
T Consensus 126 ~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l-~ia~~ld~~--~~rti~ViTK~ 202 (240)
T smart00053 126 NLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL-KLAKEVDPQ--GERTIGVITKL 202 (240)
T ss_pred ceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH-HHHHHHHHc--CCcEEEEEECC
Confidence 4779999996421 123444666 456899999986533322322 133444433 78999999999
Q ss_pred Ccccch
Q psy10443 121 DLREDR 126 (195)
Q Consensus 121 D~~~~~ 126 (195)
|.....
T Consensus 203 D~~~~~ 208 (240)
T smart00053 203 DLMDEG 208 (240)
T ss_pred CCCCcc
Confidence 987653
No 323
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.06 E-value=3.6e-10 Score=76.14 Aligned_cols=93 Identities=15% Similarity=0.078 Sum_probs=62.6
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHH
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLA 149 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (195)
+..+.++++|++++|+|++++....+. .+...+.. .+.|+++|+||+|+..... . .....+.
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~--~~~p~iiv~NK~Dl~~~~~------------~--~~~~~~~ 66 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLE--LGKKLLIVLNKADLVPKEV------------L--EKWKSIK 66 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHh--CCCcEEEEEEhHHhCCHHH------------H--HHHHHHH
Confidence 445667789999999999876533221 12232322 2689999999999864321 0 1111222
Q ss_pred HHcCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 150 NKIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 150 ~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
...+ .+++.+||+++.|++++++.+.+.+..
T Consensus 67 ~~~~-~~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 67 ESEG-IPVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred HhCC-CcEEEEEccccccHHHHHHHHHHHHhh
Confidence 3333 578999999999999999999887753
No 324
>PRK12289 GTPase RsgA; Reviewed
Probab=99.06 E-value=1.2e-09 Score=82.39 Aligned_cols=96 Identities=18% Similarity=0.172 Sum_probs=66.6
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHH
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQG 145 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (195)
+-..+.+..+.++|.+++|+|+.++.......+.|+..... .++|+++|+||+|+..... .+..
T Consensus 78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~~~~--------------~~~~ 141 (352)
T PRK12289 78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVSPTE--------------QQQW 141 (352)
T ss_pred cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCChHH--------------HHHH
Confidence 33455566788999999999999876333222346655533 4799999999999965321 1122
Q ss_pred HHHHHHcCCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 146 QKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 146 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
.......+ .+++.+||+++.|++++++.+...
T Consensus 142 ~~~~~~~g-~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 142 QDRLQQWG-YQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred HHHHHhcC-CeEEEEEcCCCCCHHHHhhhhccc
Confidence 22233445 679999999999999999988653
No 325
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.04 E-value=8.6e-10 Score=78.37 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=58.8
Q ss_pred EEEEeCCC--CccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhh
Q psy10443 56 LGLWDTAG--QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 56 l~~~D~~G--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 133 (195)
+.++.|.| |.+.. ...-+|.+++|....-.+..+..+.-.++... ++|+||+|.......-.
T Consensus 124 ~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD--------i~vVNKaD~~gA~~~~~--- 187 (266)
T PF03308_consen 124 VIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD--------IFVVNKADRPGADRTVR--- 187 (266)
T ss_dssp EEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S--------EEEEE--SHHHHHHHHH---
T ss_pred EEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc--------EEEEeCCChHHHHHHHH---
Confidence 44666644 44322 34468999999998887777766532333322 88899999655432100
Q ss_pred hcCCCCccHHHHHHHHH---HcCCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 134 EQNLSPVKREQGQKLAN---KIRAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 134 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
..+....+.. ..|..|++.+||.++.|++++++.|.+..
T Consensus 188 -------~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 188 -------DLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp -------HHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -------HHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 0011111111 12346899999999999999999988743
No 326
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=7.7e-09 Score=76.99 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=56.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEe----------------CCEEEEEEEEeCCCCc---
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTV----------------DGIPVSLGLWDTAGQE--- 65 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~----------------~~~~~~l~~~D~~G~~--- 65 (195)
.+++.++|.||||||||.|.++.... ..+|+.++.+.=.....+ .-....+.|+|.+|--
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 36899999999999999999999764 367777663321211111 1233568899999832
Q ss_pred -cccccCCC---CCCCccEEEEEEeCC
Q psy10443 66 -DYDRLRPL---SYPQTDVFLICYSVV 88 (195)
Q Consensus 66 -~~~~~~~~---~~~~~d~~i~v~d~~ 88 (195)
+-..+-.. -+|.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 22233333 367899999999986
No 327
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.02 E-value=2.3e-09 Score=85.37 Aligned_cols=117 Identities=14% Similarity=0.121 Sum_probs=69.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCC-CCCC-cccceeeccceeEEeCCEEEEEEEEeCCCCccccc-------c---CCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDS-FPGE-YVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDR-------L---RPL 73 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~-~~~~-~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-------~---~~~ 73 (195)
.++|+++|.+|+||||++|.+++.. +... ..+.+..........++.. +.++||||-..... . ...
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~--L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVK--IRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCce--EEEEECCCCCccccchHHHHHHHHHHHH
Confidence 4689999999999999999999874 3221 1122222222233445544 55999999554311 0 111
Q ss_pred CCC--CccEEEEEEeCCChhc-HHHHHHhhHHHHhhhCC---CCcEEEEeeCCCcccch
Q psy10443 74 SYP--QTDVFLICYSVVSPSS-FDNVTSKWYPELKHHCP---DAPIILVGTKIDLREDR 126 (195)
Q Consensus 74 ~~~--~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~---~~p~vvv~nK~D~~~~~ 126 (195)
++. .+|++|+|..++.... .++. .++..+...+. =..+||+.|+.|...++
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~--~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppd 252 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDL--PLLRTITDVLGPSIWFNAIVTLTHAASAPPD 252 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHH--HHHHHHHHHhCHHhHcCEEEEEeCCccCCCC
Confidence 222 5799999988763322 1222 23444433221 14789999999998753
No 328
>KOG2486|consensus
Probab=99.02 E-value=2.6e-10 Score=81.13 Aligned_cols=163 Identities=15% Similarity=0.083 Sum_probs=91.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCccc-ceeeccceeEEeCCEEEEEEEEeCCC----------CccccccCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVP-TVFDNYSAPFTVDGIPVSLGLWDTAG----------QEDYDRLRP 72 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~~~D~~G----------~~~~~~~~~ 72 (195)
.++.+++++|.+|+|||||++.++.......... +.+........--+. .+.+.|.|| ...+..+..
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~--~~~~vDlPG~~~a~y~~~~~~d~~~~t~ 211 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK--SWYEVDLPGYGRAGYGFELPADWDKFTK 211 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc--eEEEEecCCcccccCCccCcchHhHhHH
Confidence 3568999999999999999999998643222111 222222211111122 445899999 122334444
Q ss_pred CCCCCc---cEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccH--HHHHH
Q psy10443 73 LSYPQT---DVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKR--EQGQK 147 (195)
Q Consensus 73 ~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~ 147 (195)
.|+.+- --+.+++|++-+-.-.+. ..++++.++ ++|+.+|.||||.........+ +.... .....
T Consensus 212 ~Y~leR~nLv~~FLLvd~sv~i~~~D~--~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~k------Kp~~~i~~~f~~ 281 (320)
T KOG2486|consen 212 SYLLERENLVRVFLLVDASVPIQPTDN--PEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGK------KPGLNIKINFQG 281 (320)
T ss_pred HHHHhhhhhheeeeeeeccCCCCCCCh--HHHHHHhhc--CCCeEEeeehhhhhhhcccccc------Cccccceeehhh
Confidence 444432 234556676643222222 244555555 8999999999998654321110 00000 00111
Q ss_pred HHHHc--CCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 148 LANKI--RAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 148 ~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
+.+.. ...|++.+|+.++.|.+.++-.+.+.
T Consensus 282 l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 282 LIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ccccceeccCCceeeecccccCceeeeeehhhh
Confidence 11111 11456789999999999998877664
No 329
>KOG2655|consensus
Probab=99.02 E-value=1.6e-08 Score=75.38 Aligned_cols=119 Identities=21% Similarity=0.258 Sum_probs=75.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCC--------ccc-ce-eeccceeEEeCCEEEEEEEEeCCCCcccc------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGE--------YVP-TV-FDNYSAPFTVDGIPVSLGLWDTAGQEDYD------ 68 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~--------~~~-t~-~~~~~~~~~~~~~~~~l~~~D~~G~~~~~------ 68 (195)
-.|.++++|++|.|||||+|.|+...+..+ ..+ |. .......+.-+|..++|++.||||-....
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 359999999999999999999988754332 111 11 11112334447888999999999932221
Q ss_pred -------------------ccCCCCCC--CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchH
Q psy10443 69 -------------------RLRPLSYP--QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127 (195)
Q Consensus 69 -------------------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 127 (195)
...+..+. ..+++++.+..+.. ++..+.- ..++.....+.++-|+-|+|.....+
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di---~~Mk~l~~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDI---EFMKKLSKKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhH---HHHHHHhccccccceeeccccCCHHH
Confidence 11112222 46899999987643 2333332 23333344788899999999887765
No 330
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.02 E-value=4.3e-09 Score=77.91 Aligned_cols=121 Identities=22% Similarity=0.272 Sum_probs=75.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCc----------ccceee-ccceeEEeCCEEEEEEEEeCCCCcccc----
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEY----------VPTVFD-NYSAPFTVDGIPVSLGLWDTAGQEDYD---- 68 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~----------~~t~~~-~~~~~~~~~~~~~~l~~~D~~G~~~~~---- 68 (195)
..+++|+++|++|.|||||+|.|++....... .++..- .....+.-++..+.+.++||||-..+-
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 45799999999999999999999987432221 122211 122344457888999999999932221
Q ss_pred ---------------------ccCCC-CCC--CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCccc
Q psy10443 69 ---------------------RLRPL-SYP--QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRE 124 (195)
Q Consensus 69 ---------------------~~~~~-~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~ 124 (195)
...+. .+. ..|++++.+..+. .++..+.-..+..+ ...+.++-|+.|+|...
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~l---s~~vNlIPVI~KaD~lT 176 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRL---SKRVNLIPVIAKADTLT 176 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHH---hcccCeeeeeeccccCC
Confidence 00111 111 3688999988764 23333332233333 34688899999999987
Q ss_pred chHh
Q psy10443 125 DRET 128 (195)
Q Consensus 125 ~~~~ 128 (195)
..+.
T Consensus 177 ~~El 180 (373)
T COG5019 177 DDEL 180 (373)
T ss_pred HHHH
Confidence 6653
No 331
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.02 E-value=6.3e-09 Score=76.81 Aligned_cols=87 Identities=21% Similarity=0.177 Sum_probs=64.5
Q ss_pred CCCCCccEEEEEEeCCChh-cHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHH
Q psy10443 73 LSYPQTDVFLICYSVVSPS-SFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANK 151 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
..+.++|.+++|+|+.++. ++..+. .|+..+... ++|+++|+||+|+..... ......+...
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ld-r~L~~~~~~--~ip~iIVlNK~DL~~~~~--------------~~~~~~~~~~ 136 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLD-RYLVAAEAA--GIEPVIVLTKADLLDDEE--------------EELELVEALA 136 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHH-HHHHHHHHc--CCCEEEEEEHHHCCChHH--------------HHHHHHHHHh
Confidence 3478999999999999987 666665 477766554 789999999999965421 1112223334
Q ss_pred cCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 152 IRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 152 ~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
.+ .+++.+||+++.|+++++..|..
T Consensus 137 ~g-~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 137 LG-YPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred CC-CeEEEEECCCCccHHHHHhhhcc
Confidence 45 68999999999999999887764
No 332
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.01 E-value=1.7e-09 Score=78.01 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=62.7
Q ss_pred EEEEeCCC--CccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhh
Q psy10443 56 LGLWDTAG--QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLS 133 (195)
Q Consensus 56 l~~~D~~G--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~ 133 (195)
+.++.|.| |.+ -....-+|.+++|.-..-.+..+..+.-.++.-. ++|+||.|............
T Consensus 146 vIIVETVGvGQse-----v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--------i~vINKaD~~~A~~a~r~l~ 212 (323)
T COG1703 146 VIIVETVGVGQSE-----VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--------IIVINKADRKGAEKAARELR 212 (323)
T ss_pred EEEEEecCCCcch-----hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh--------eeeEeccChhhHHHHHHHHH
Confidence 44666654 332 1234457888888777777777766532322222 88899999654321111000
Q ss_pred hcCCCCccHHHH--HHHHHHcCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 134 EQNLSPVKREQG--QKLANKIRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 134 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
. .... ..+....|..+++.+||.+|+|++++++.+.+...
T Consensus 213 ~-------al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 213 S-------ALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred H-------HHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 0 0000 11233345578999999999999999999988653
No 333
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.96 E-value=2.3e-09 Score=81.49 Aligned_cols=96 Identities=24% Similarity=0.341 Sum_probs=69.7
Q ss_pred CccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHH
Q psy10443 64 QEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKRE 143 (195)
Q Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 143 (195)
++.|..+...+.+.++++++|+|+.+... .|...+.....+.|+++|+||+|+.... ...+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k~-------------~~~~ 110 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPKS-------------VNLS 110 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCCC-------------CCHH
Confidence 45777788888899999999999977542 2444554444478999999999997532 2223
Q ss_pred HHH----HHHHHcCC--ceeEEeccCCcccHHHHHHHHHHH
Q psy10443 144 QGQ----KLANKIRA--VKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 144 ~~~----~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
+.. ++++..+. ..++.+||++|.|+++++..+.+.
T Consensus 111 ~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 111 KIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 333 34555552 148999999999999999998764
No 334
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.96 E-value=1.4e-09 Score=79.14 Aligned_cols=80 Identities=18% Similarity=0.162 Sum_probs=53.4
Q ss_pred EEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCE---------------EEEEEEEeCCCCcccc----
Q psy10443 9 CVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGI---------------PVSLGLWDTAGQEDYD---- 68 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~~~D~~G~~~~~---- 68 (195)
|+++|.||||||||+|+|++... ..+++.++.+.....+.+.+. ...+.++|+||-..-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999999754 345566664443444444332 1247899999943211
Q ss_pred ccC---CCCCCCccEEEEEEeCC
Q psy10443 69 RLR---PLSYPQTDVFLICYSVV 88 (195)
Q Consensus 69 ~~~---~~~~~~~d~~i~v~d~~ 88 (195)
.+. ...++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 111 12356899999999974
No 335
>KOG1547|consensus
Probab=98.95 E-value=1.1e-08 Score=71.60 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=90.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCC---------Ccccceeec-cceeEEeCCEEEEEEEEeCCCCccc---cccC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPG---------EYVPTVFDN-YSAPFTVDGIPVSLGLWDTAGQEDY---DRLR 71 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~---------~~~~t~~~~-~~~~~~~~~~~~~l~~~D~~G~~~~---~~~~ 71 (195)
=+|+|.|+|.+|.|||||+|.++...... .+..|++-. .+..+.-++...++.++||||-.+. ...|
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 46899999999999999999988753221 222233222 2345556788899999999983221 1111
Q ss_pred -----------------------CCCCC--CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 72 -----------------------PLSYP--QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 72 -----------------------~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
...+. ..+++++.+..+-. ++..+.-.++..+.+ -+.++-|+-|+|...-.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~---vvNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE---VVNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh---hheeeeeEeecccccHH
Confidence 11222 35788888877642 333332223444433 36677788899976544
Q ss_pred HhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 127 ETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
+.. .-.+.+++-...++ +.+++--+.+.+.-+..++.-++
T Consensus 201 Er~----------~FkqrI~~el~~~~-i~vYPq~~fded~ed~~lN~kvR 240 (336)
T KOG1547|consen 201 ERS----------AFKQRIRKELEKHG-IDVYPQDSFDEDLEDKTLNDKVR 240 (336)
T ss_pred HHH----------HHHHHHHHHHHhcC-cccccccccccchhHHHHHHHHH
Confidence 321 12233343444455 56666655555544455555444
No 336
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.94 E-value=1.1e-08 Score=76.13 Aligned_cols=167 Identities=21% Similarity=0.135 Sum_probs=98.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccce----------eeccce-----eEEeC-CEE--------------
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTV----------FDNYSA-----PFTVD-GIP-------------- 53 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~----------~~~~~~-----~~~~~-~~~-------------- 53 (195)
..++.+.+.|.-+.|||||+..|..+........|. ....+. .+-++ ++.
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 457899999999999999999888764432211111 000000 11111 111
Q ss_pred ------EEEEEEeCCCCccccccC--CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 54 ------VSLGLWDTAGQEDYDRLR--PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 54 ------~~l~~~D~~G~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
-.+.|.|+.||+.|...+ ...-.+.|-.++++.+++.-+...-+ .+..+... .+|+++++||+|+..+
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkE--HLgi~~a~--~lPviVvvTK~D~~~d 270 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKE--HLGIALAM--ELPVIVVVTKIDMVPD 270 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhH--hhhhhhhh--cCCEEEEEEecccCcH
Confidence 225699999999885332 33344689999999998765543322 33333333 7999999999999876
Q ss_pred hHhhhhhhhcC---------CCCc-cHHHH--HHHHHH--cCCceeEEeccCCcccHHHHHHH
Q psy10443 126 RETLNLLSEQN---------LSPV-KREQG--QKLANK--IRAVKYMECSALTQRGLRQVFDE 174 (195)
Q Consensus 126 ~~~~~~~~~~~---------~~~~-~~~~~--~~~~~~--~~~~~~~~~Sa~~~~~v~~~~~~ 174 (195)
.......++.. +..+ +..+. ...+-+ -+.+|+|.+|+.+|+|++-+.+-
T Consensus 271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~ 333 (527)
T COG5258 271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF 333 (527)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence 65444322211 1111 11111 111222 22479999999999998655443
No 337
>KOG0410|consensus
Probab=98.91 E-value=4.2e-09 Score=76.68 Aligned_cols=148 Identities=24% Similarity=0.300 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEe-CCEEEEEEEEeCCCCc---------cccccCCCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTV-DGIPVSLGLWDTAGQE---------DYDRLRPLSY 75 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~-~~~~~~l~~~D~~G~~---------~~~~~~~~~~ 75 (195)
--|.|+|-.|+|||||++.|+.... +.+.-..+-+........ .|..+- +.||-|-- .|.+. ..-.
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vl--ltDTvGFisdLP~~LvaAF~AT-LeeV 255 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVL--LTDTVGFISDLPIQLVAAFQAT-LEEV 255 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEE--EeechhhhhhCcHHHHHHHHHH-HHHH
Confidence 4589999999999999999996543 222222222222222222 344444 88998821 11111 1224
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhh-CCCCc----EEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHH-CPDAP----IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p----~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
..+|.++-|.|+++|..-+.... -+..++.. .++.| ++=|=||.|..+... ..+
T Consensus 256 aeadlllHvvDiShP~ae~q~e~-Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-------------e~E------- 314 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRET-VLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-------------EEE------- 314 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHH-HHHHHHhcCCCcHHHHhHHHhhccccccccccC-------------ccc-------
Confidence 47899999999999976665543 44555543 12222 345568888755421 111
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHcC
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVLR 181 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~ 181 (195)
.+ ..+.+|+++|+|++++.+.+-..+..
T Consensus 315 ~n---~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 315 KN---LDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cC---CccccccccCccHHHHHHHHHHHhhh
Confidence 11 14678999999999999988776543
No 338
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.90 E-value=1.1e-08 Score=69.01 Aligned_cols=91 Identities=15% Similarity=0.065 Sum_probs=59.5
Q ss_pred CCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc
Q psy10443 73 LSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKI 152 (195)
Q Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (195)
..+.++|.+++|+|++++....+ ..+...+.....+.|+++|+||+|+..... .......+...+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~-------------~~~~~~~~~~~~ 68 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV-------------TARWVKILSKEY 68 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH-------------HHHHHHHHhcCC
Confidence 35678999999999998743221 123344443334689999999999965421 011222222222
Q ss_pred CCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 153 RAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 153 ~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
. ...+.+||+.+.|++++++.+.+.+
T Consensus 69 ~-~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 69 P-TIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred c-EEEEEeeccccccHHHHHHHHHHHH
Confidence 2 2357899999999999999987764
No 339
>KOG0463|consensus
Probab=98.90 E-value=5e-09 Score=77.86 Aligned_cols=161 Identities=14% Similarity=0.127 Sum_probs=91.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCC------------------cccceeeccce--------------------eE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGE------------------YVPTVFDNYSA--------------------PF 47 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~------------------~~~t~~~~~~~--------------------~~ 47 (195)
+++|+|+|+-.+|||||+..|+++..... .....++.+.. .-
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 57999999999999999988887632210 00011111100 00
Q ss_pred EeCCEEEEEEEEeCCCCccccccCCCCCC--CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 48 TVDGIPVSLGLWDTAGQEDYDRLRPLSYP--QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 48 ~~~~~~~~l~~~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
...+..-.+.|+|++|+++|...+-..+. -.|...+++.++...-- ...+ .+..... -.+|+++|++|+|....
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiG-mTKE-HLgLALa--L~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIG-MTKE-HLGLALA--LHVPVFVVVTKIDMCPA 288 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccccee-ccHH-hhhhhhh--hcCcEEEEEEeeccCcH
Confidence 00112234679999999999765544433 46788888887643211 1111 2222222 27999999999999887
Q ss_pred hHhhhhhhhcCC-------CC-----ccHHH----HHHHHHHcCCceeEEeccCCcccHHHH
Q psy10443 126 RETLNLLSEQNL-------SP-----VKREQ----GQKLANKIRAVKYMECSALTQRGLRQV 171 (195)
Q Consensus 126 ~~~~~~~~~~~~-------~~-----~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 171 (195)
+..++..+.+.. +. .+.++ +..|..+. .+|+|.+|..+|.|+.-+
T Consensus 289 NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser-~CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 289 NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSER-VCPIFQVSNVTGTNLPLL 349 (641)
T ss_pred HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCcccc-ccceEEeccccCCChHHH
Confidence 765554332110 00 00011 11222222 278999999999998654
No 340
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.88 E-value=5.4e-09 Score=69.20 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=34.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCC--CcccceeeccceeEEeCCEEEEEEEEeCCCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPG--EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~ 64 (195)
+++++|.+|+|||||+|++.+..... ....++ .....+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKT--KHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcc--cceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999875431 111111 1122333433 3569999994
No 341
>PRK12288 GTPase RsgA; Reviewed
Probab=98.85 E-value=2.3e-08 Score=75.49 Aligned_cols=88 Identities=17% Similarity=0.211 Sum_probs=63.4
Q ss_pred CCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCc
Q psy10443 76 PQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAV 155 (195)
Q Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (195)
.|+|.+++|++++...++..+. .|+..... .++|.++|+||+|+...... ....+........+ .
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ld-r~L~~a~~--~~i~~VIVlNK~DL~~~~~~-----------~~~~~~~~~y~~~g-~ 183 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIID-RYLVACET--LGIEPLIVLNKIDLLDDEGR-----------AFVNEQLDIYRNIG-Y 183 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHH-HHHHHHHh--cCCCEEEEEECccCCCcHHH-----------HHHHHHHHHHHhCC-C
Confidence 5689999999998777777766 47665543 47899999999999764210 00112222233455 6
Q ss_pred eeEEeccCCcccHHHHHHHHHHH
Q psy10443 156 KYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 156 ~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
+++.+||+++.|++++++.|...
T Consensus 184 ~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 184 RVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred eEEEEeCCCCcCHHHHHHHHhhC
Confidence 89999999999999999998764
No 342
>KOG0460|consensus
Probab=98.84 E-value=5e-08 Score=71.62 Aligned_cols=171 Identities=16% Similarity=0.152 Sum_probs=104.8
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcC----CCC--CCcc-----------cceeeccceeEEeCCEEEEEEEEeCCCCc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTD----SFP--GEYV-----------PTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~----~~~--~~~~-----------~t~~~~~~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
+++.+||.-+|.-..|||||-..++.- ... ..|+ ..+.......+....+.|. =.|+|||.
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYa--H~DCPGHA 128 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYA--HTDCPGHA 128 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccc--cCCCCchH
Confidence 467899999999999999998877652 110 0111 0111111122233344444 77999999
Q ss_pred cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHH
Q psy10443 66 DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQG 145 (195)
Q Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 145 (195)
+|-...-....+.|+.|+|+.++|..=-+.-+ ++ ++.+...=..+++.+||.|+..+.+-.+ .-.-++
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~MPQTrE-Hl--LLArQVGV~~ivvfiNKvD~V~d~e~le---------LVEmE~ 196 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPMPQTRE-HL--LLARQVGVKHIVVFINKVDLVDDPEMLE---------LVEMEI 196 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCCcchHH-HH--HHHHHcCCceEEEEEecccccCCHHHHH---------HHHHHH
Confidence 98776666777899999999999965444332 12 2222222246788889999996654333 223456
Q ss_pred HHHHHHcCC----ceeEEecc---CCcc-------cHHHHHHHHHHHHcCCCcccc
Q psy10443 146 QKLANKIRA----VKYMECSA---LTQR-------GLRQVFDEAVRAVLRPEPVKR 187 (195)
Q Consensus 146 ~~~~~~~~~----~~~~~~Sa---~~~~-------~v~~~~~~l~~~~~~~~~~~~ 187 (195)
+++...++. .|++.=|| ..|. .+.++++.+-+.+..+.+...
T Consensus 197 RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~ 252 (449)
T KOG0460|consen 197 RELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLD 252 (449)
T ss_pred HHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccC
Confidence 667776653 56766554 4442 366777777777776665443
No 343
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.74 E-value=3.1e-08 Score=66.77 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=34.9
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG 63 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G 63 (195)
+.++|+++|.+|+|||||+|+|.+... .....+++.... .+.. +.. +.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~--~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQ--YITL-MKR--IYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEE--EEEc-CCC--EEEEECcC
Confidence 467899999999999999999998543 122233332211 1112 222 45999998
No 344
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.74 E-value=3.5e-08 Score=67.32 Aligned_cols=54 Identities=24% Similarity=0.242 Sum_probs=35.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG 63 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G 63 (195)
..++++++|.||+|||||+|++.+.... ...++++.... .+.++ . .+.++|+||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~--~~~~~-~--~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQ--EVHLD-K--KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceE--EEEeC-C--CEEEEECcC
Confidence 3589999999999999999999986431 22233332211 22222 2 356999998
No 345
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.72 E-value=8.9e-08 Score=64.39 Aligned_cols=84 Identities=18% Similarity=0.110 Sum_probs=54.6
Q ss_pred cEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
|.+++|+|+.++.+.... ++........+.|+++|+||+|+..... . .+....+.... ...++
T Consensus 1 Dvvl~VvD~~~p~~~~~~---~i~~~~~~~~~~p~IiVlNK~Dl~~~~~------------~-~~~~~~~~~~~-~~~ii 63 (155)
T cd01849 1 DVILEVLDARDPLGTRSP---DIERVLIKEKGKKLILVLNKADLVPKEV------------L-RKWLAYLRHSY-PTIPF 63 (155)
T ss_pred CEEEEEEeccCCccccCH---HHHHHHHhcCCCCEEEEEechhcCCHHH------------H-HHHHHHHHhhC-CceEE
Confidence 689999999887654432 2221111224789999999999865321 0 01111222222 35689
Q ss_pred EeccCCcccHHHHHHHHHHHH
Q psy10443 159 ECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 159 ~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
.+||+++.|++++++.+.+..
T Consensus 64 ~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 64 KISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred EEeccCCcChhhHHHHHHHHh
Confidence 999999999999999887653
No 346
>KOG0448|consensus
Probab=98.70 E-value=2.2e-07 Score=73.84 Aligned_cols=117 Identities=15% Similarity=0.270 Sum_probs=71.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccce--------eEEeC-------------------------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSA--------PFTVD------------------------- 50 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~--------~~~~~------------------------- 50 (195)
...||++.|..++||||++|.++...+ +....+++...... ...++
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 467999999999999999999988643 22222222111000 00000
Q ss_pred -CEEE--------------EEEEEeCCCCc---cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCc
Q psy10443 51 -GIPV--------------SLGLWDTAGQE---DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAP 112 (195)
Q Consensus 51 -~~~~--------------~l~~~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 112 (195)
+.-+ .+.+.|.||-+ ...+-...+..++|++|+|.++.+.-...+. .++...... +..
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek--~Ff~~vs~~--Kpn 263 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK--QFFHKVSEE--KPN 263 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH--HHHHHhhcc--CCc
Confidence 0000 14477888843 3334445567789999999999876554443 355555444 566
Q ss_pred EEEEeeCCCcccc
Q psy10443 113 IILVGTKIDLRED 125 (195)
Q Consensus 113 ~vvv~nK~D~~~~ 125 (195)
++|+.||.|....
T Consensus 264 iFIlnnkwDasas 276 (749)
T KOG0448|consen 264 IFILNNKWDASAS 276 (749)
T ss_pred EEEEechhhhhcc
Confidence 7778899998665
No 347
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.70 E-value=5.1e-08 Score=64.50 Aligned_cols=87 Identities=20% Similarity=0.189 Sum_probs=55.9
Q ss_pred CCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcC
Q psy10443 74 SYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIR 153 (195)
Q Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
.+..+|++++|+|+.++.+..+. .+...+.....+.|+++++||+|+..... ..+..++....+
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~~--~l~~~l~~~~~~k~~iivlNK~DL~~~~~--------------~~~~~~~~~~~~ 71 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRPP--DLERYVKEVDPRKKNILLLNKADLLTEEQ--------------RKAWAEYFKKEG 71 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCCH--HHHHHHHhccCCCcEEEEEechhcCCHHH--------------HHHHHHHHHhcC
Confidence 46789999999999987654421 13333333335789999999999865321 122333444444
Q ss_pred CceeEEeccCCcc-----------cHHHHHHHHHH
Q psy10443 154 AVKYMECSALTQR-----------GLRQVFDEAVR 177 (195)
Q Consensus 154 ~~~~~~~Sa~~~~-----------~v~~~~~~l~~ 177 (195)
.+++.+||+++. |-..+++.+..
T Consensus 72 -~~ii~iSa~~~~~~~~~~G~~~vGKstlin~l~~ 105 (141)
T cd01857 72 -IVVVFFSALKENATIGLVGYPNVGKSSLINALVG 105 (141)
T ss_pred -CeEEEEEecCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 578899998654 45566666543
No 348
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.69 E-value=5.9e-08 Score=66.34 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=36.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCC--CcccceeeccceeEEeCCEEEEEEEEeCCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPG--EYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~ 64 (195)
..++++++|.+|+|||||++++.+..+.. ....++.. ...+.++ ..+.+|||||-
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~--~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG--IQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee--eEEEEec---CCEEEEECCCC
Confidence 45799999999999999999999865421 11122221 1122332 24569999993
No 349
>KOG0466|consensus
Probab=98.68 E-value=8.7e-09 Score=74.55 Aligned_cols=163 Identities=18% Similarity=0.186 Sum_probs=101.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC---CC----------------------CCcccc----------eeeccceeEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS---FP----------------------GEYVPT----------VFDNYSAPFT 48 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~---~~----------------------~~~~~t----------~~~~~~~~~~ 48 (195)
...++|.-+|.-..||||++..+.+-. |- .+.-|. ..+.. .+.
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~--~c~ 113 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRP--PCD 113 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCC--Ccc
Confidence 456899999999999999998887631 00 000000 00100 111
Q ss_pred eCCE--E----EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCCh----hcHHHHHHhhHHHHhhhCCCCcEEEEee
Q psy10443 49 VDGI--P----VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSP----SSFDNVTSKWYPELKHHCPDAPIILVGT 118 (195)
Q Consensus 49 ~~~~--~----~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~vvv~n 118 (195)
..+. + -.+.|.|.|||+...+.......-.|++++++..+.. +.-+++.. .+.+. =..++++.|
T Consensus 114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~----LkhiiilQN 187 (466)
T KOG0466|consen 114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMK----LKHIIILQN 187 (466)
T ss_pred cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhh----hceEEEEec
Confidence 1111 1 1256999999987655444444456888888877642 22222221 12222 246889999
Q ss_pred CCCcccchHhhhhhhhcCCCCccHHHHHHHHHHc--CCceeEEeccCCcccHHHHHHHHHHHHcCCCc
Q psy10443 119 KIDLREDRETLNLLSEQNLSPVKREQGQKLANKI--RAVKYMECSALTQRGLRQVFDEAVRAVLRPEP 184 (195)
Q Consensus 119 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~~ 184 (195)
|.|+..+.... ...++++.|...- ...|++++||.-..|++-+.+.|++.+.-+-+
T Consensus 188 KiDli~e~~A~----------eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 188 KIDLIKESQAL----------EQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred hhhhhhHHHHH----------HHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence 99998765421 2345666676643 33689999999999999999999999876543
No 350
>KOG1487|consensus
Probab=98.66 E-value=3e-07 Score=65.26 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=57.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccc-------ccCCCCCCCc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYD-------RLRPLSYPQT 78 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~-------~~~~~~~~~~ 78 (195)
-++-++|.|.+||||++..+.+-.. ...|..|+-........+++-+ +++.|+||--+-. .......+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaK--iqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAK--IQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccc--eeeecCcchhcccccCCCCccEEEEEeecc
Confidence 3789999999999999999987432 2344445544444455555554 5599999832211 1122345678
Q ss_pred cEEEEEEeCCChhcHHHH
Q psy10443 79 DVFLICYSVVSPSSFDNV 96 (195)
Q Consensus 79 d~~i~v~d~~~~~s~~~~ 96 (195)
+.+++|.|+-.|-+...+
T Consensus 138 nli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred cEEEEEeeccCcccHHHH
Confidence 999999998776554443
No 351
>KOG0465|consensus
Probab=98.65 E-value=7.5e-08 Score=75.52 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC-----CC-CCcccceeecc-----------ceeEEeCCEEEEEEEEeCCCCccccc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS-----FP-GEYVPTVFDNY-----------SAPFTVDGIPVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~-----~~-~~~~~t~~~~~-----------~~~~~~~~~~~~l~~~D~~G~~~~~~ 69 (195)
-+|-+.-.-.+||||+-.+.+... +. .....++.+.. +.-.....+.++++++|||||-.|.-
T Consensus 40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~ 119 (721)
T KOG0465|consen 40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTF 119 (721)
T ss_pred cccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEE
Confidence 467777778899999998865421 00 00111111111 11111223467888999999999998
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
.....++-.|++++|+++...-.-+... .|.+.-+. ++|.+..+||.|....+
T Consensus 120 EVeRALrVlDGaVlvl~aV~GVqsQt~t-V~rQ~~ry---~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 120 EVERALRVLDGAVLVLDAVAGVESQTET-VWRQMKRY---NVPRICFINKMDRMGAS 172 (721)
T ss_pred EehhhhhhccCeEEEEEcccceehhhHH-HHHHHHhc---CCCeEEEEehhhhcCCC
Confidence 8888999999999999987654333333 37666655 79999999999987543
No 352
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.64 E-value=1.1e-07 Score=69.96 Aligned_cols=55 Identities=25% Similarity=0.388 Sum_probs=36.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~ 64 (195)
+.++++++|.||+|||||+|+|.+.... .....++... ..+.++. .+.++||||-
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC---CEEEEECCCc
Confidence 5689999999999999999999976432 2222232221 2233322 3469999996
No 353
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.64 E-value=1.2e-07 Score=63.90 Aligned_cols=56 Identities=21% Similarity=0.166 Sum_probs=36.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG 63 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G 63 (195)
...+++++|.+|+||||+++++.+... ....++.+.........-+ ..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKIT--SKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcC--CCEEEEECcC
Confidence 467899999999999999999997542 2223333322221111112 2467999998
No 354
>KOG0099|consensus
Probab=98.63 E-value=6.9e-08 Score=68.51 Aligned_cols=129 Identities=13% Similarity=0.185 Sum_probs=77.1
Q ss_pred EEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCC----------hhcHHHHHHhhHHHHhhh--CCCCcEEEEeeCCC
Q psy10443 54 VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVS----------PSSFDNVTSKWYPELKHH--CPDAPIILVGTKID 121 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~D 121 (195)
+.++.+|++||..-+.-|-+++.+..++|||+..++ ...+++... +...+..+ ...+.+++.+||.|
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~-LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALN-LFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHH-HHHHHHhhhHHhhhheeEEecHHH
Confidence 558899999999999999999999999999999874 122233222 22222211 12578899999999
Q ss_pred cccchHhhhhh--hhc-------C-C-----CC-ccHH--HHHHHHHH--------c--C--CceeEEeccCCcccHHHH
Q psy10443 122 LREDRETLNLL--SEQ-------N-L-----SP-VKRE--QGQKLANK--------I--R--AVKYMECSALTQRGLRQV 171 (195)
Q Consensus 122 ~~~~~~~~~~~--~~~-------~-~-----~~-~~~~--~~~~~~~~--------~--~--~~~~~~~Sa~~~~~v~~~ 171 (195)
+.......... ++. . + .. .++. .+.-|.+. . + -+-...+.|.+.++++.+
T Consensus 281 llaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrV 360 (379)
T KOG0099|consen 281 LLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 360 (379)
T ss_pred HHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHH
Confidence 97644322211 000 0 0 00 0000 01111110 0 1 023455788999999999
Q ss_pred HHHHHHHHcCCC
Q psy10443 172 FDEAVRAVLRPE 183 (195)
Q Consensus 172 ~~~l~~~~~~~~ 183 (195)
|+...+.+.+..
T Consensus 361 FnDcrdiIqr~h 372 (379)
T KOG0099|consen 361 FNDCRDIIQRMH 372 (379)
T ss_pred HHHHHHHHHHHH
Confidence 999888776543
No 355
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.63 E-value=9.7e-07 Score=68.18 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=82.4
Q ss_pred EEEEEeCCCCccccccCCCCCCCccEEEEEEeCCCh----------hcHHHHHHhhHHHHhhh-CCCCcEEEEeeCCCcc
Q psy10443 55 SLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSP----------SSFDNVTSKWYPELKHH-CPDAPIILVGTKIDLR 123 (195)
Q Consensus 55 ~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~vvv~nK~D~~ 123 (195)
.+.++|++|+...+.-|..++.+++++|||+++++- ..+.+....|-...... ..+.|++|++||.|+.
T Consensus 237 ~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 237 KFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLF 316 (389)
T ss_dssp EEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHH
T ss_pred ccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHH
Confidence 456999999998899999999999999999998742 23444444344444432 4689999999999987
Q ss_pred cchHhhhh-hhhcCCCC-----ccHHHHHHHHHH--------c---CCceeEEeccCCcccHHHHHHHHHHHH
Q psy10443 124 EDRETLNL-LSEQNLSP-----VKREQGQKLANK--------I---RAVKYMECSALTQRGLRQVFDEAVRAV 179 (195)
Q Consensus 124 ~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~--------~---~~~~~~~~Sa~~~~~v~~~~~~l~~~~ 179 (195)
...-.... ....-+.. -..+.+..|... . ..+.+..++|.+..+++.+|+.+.+.+
T Consensus 317 ~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 317 EEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 64433222 22211211 223444443332 1 224567899999999999999988754
No 356
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.62 E-value=1.4e-07 Score=71.16 Aligned_cols=82 Identities=15% Similarity=0.069 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCE---------------EEEEEEEeCCCCccccc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGI---------------PVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~~~D~~G~~~~~~ 69 (195)
+++.++|.|++|||||.+.+++... ..+|+.++.......+.+.+. ...+.+.|+||-..-.+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998755 345666654433334444331 13567999999543211
Q ss_pred -------cCCCCCCCccEEEEEEeCC
Q psy10443 70 -------LRPLSYPQTDVFLICYSVV 88 (195)
Q Consensus 70 -------~~~~~~~~~d~~i~v~d~~ 88 (195)
.....++++|+++.|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1222467899999999985
No 357
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.61 E-value=2.2e-07 Score=63.57 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=59.1
Q ss_pred CCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
....+.++|.+++|+|++++...... .+...+ .+.|+++|+||+|+..... . ....++.+
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~----~~k~~ilVlNK~Dl~~~~~------------~--~~~~~~~~ 72 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL----GNKPRIIVLNKADLADPKK------------T--KKWLKYFE 72 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh----cCCCEEEEEehhhcCChHH------------H--HHHHHHHH
Confidence 35567899999999999876543221 122222 3579999999999864321 0 11111222
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHc
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVL 180 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~ 180 (195)
... ..++.+||+++.|++++.+.+.+.+.
T Consensus 73 ~~~-~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 73 SKG-EKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred hcC-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 222 46889999999999999999988763
No 358
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.60 E-value=2e-07 Score=68.62 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=61.9
Q ss_pred CCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
....+..+|++++|+|+.++.+.... .+...+ .+.|+++|+||+|+..... .....++..
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~--------------~~~~~~~~~ 74 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAV--------------TKQWLKYFE 74 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHH--------------HHHHHHHHH
Confidence 35567899999999999877553322 122333 2689999999999864321 011111122
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHcCCC
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVLRPE 183 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~~ 183 (195)
..+ .+++.+||+++.|++++.+.+.+.+.+..
T Consensus 75 ~~~-~~vi~iSa~~~~gi~~L~~~i~~~~~~~~ 106 (276)
T TIGR03596 75 EKG-IKALAINAKKGKGVKKIIKAAKKLLKEKN 106 (276)
T ss_pred HcC-CeEEEEECCCcccHHHHHHHHHHHHHHhh
Confidence 233 56899999999999999999988775443
No 359
>KOG0467|consensus
Probab=98.59 E-value=1.9e-07 Score=74.96 Aligned_cols=115 Identities=18% Similarity=0.125 Sum_probs=76.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCC--CCCC------cccceeeccceeE-------EeCCEEEEEEEEeCCCCcccc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDS--FPGE------YVPTVFDNYSAPF-------TVDGIPVSLGLWDTAGQEDYD 68 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~--~~~~------~~~t~~~~~~~~~-------~~~~~~~~l~~~D~~G~~~~~ 68 (195)
..--+++++-.-..|||||...|.... +... +..+.++.....+ ..-...+.++++|.|||-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 445689999999999999999987642 1111 1111122221111 222345678899999999999
Q ss_pred ccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCc
Q psy10443 69 RLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDL 122 (195)
Q Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~ 122 (195)
+......+-+|++++++|+...-.-+...- +.+.. ..+...++|+||+|.
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~v-lrq~~---~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAV-LRQAW---IEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHH-HHHHH---HccCceEEEEehhhh
Confidence 999999999999999999987544333220 11111 126778899999993
No 360
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=4.7e-07 Score=70.95 Aligned_cols=142 Identities=19% Similarity=0.222 Sum_probs=87.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeecccee-EEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAP-FTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
.+++-++|+|+||+|||||++.|..+. .. .+.+....+ ..+.++.-++.|..+|. ...++. ....-+|.++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~-tk----~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVl 138 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRF-TK----QTIDEIRGPITVVSGKTRRITFLECPS--DLHQMI-DVAKIADLVL 138 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHH-HH----hhhhccCCceEEeecceeEEEEEeChH--HHHHHH-hHHHhhheeE
Confidence 468899999999999999999988642 11 122222332 34467777888999883 333332 2334689999
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCc-EEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEec
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAP-IILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECS 161 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (195)
+++|.+-.-..+.. .++..+..+ +.| ++-|++..|+......... ......-+.|..-+.+..+|.+|
T Consensus 139 LlIdgnfGfEMETm--EFLnil~~H--GmPrvlgV~ThlDlfk~~stLr~-------~KKrlkhRfWtEiyqGaKlFyls 207 (1077)
T COG5192 139 LLIDGNFGFEMETM--EFLNILISH--GMPRVLGVVTHLDLFKNPSTLRS-------IKKRLKHRFWTEIYQGAKLFYLS 207 (1077)
T ss_pred EEeccccCceehHH--HHHHHHhhc--CCCceEEEEeecccccChHHHHH-------HHHHHhhhHHHHHcCCceEEEec
Confidence 99998754333333 266666554 444 5667799998765321110 00011224566666667788888
Q ss_pred cCC
Q psy10443 162 ALT 164 (195)
Q Consensus 162 a~~ 164 (195)
...
T Consensus 208 gV~ 210 (1077)
T COG5192 208 GVE 210 (1077)
T ss_pred ccc
Confidence 664
No 361
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.55 E-value=2.2e-07 Score=68.74 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=37.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCCc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQE 65 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~ 65 (195)
..++++++|.||||||||+|+|.+.... ...++++... ..+.++ . .+.++||||-.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~-~--~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLG-K--GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeC-C--cEEEEECCCcC
Confidence 5689999999999999999999986531 2222333221 122232 2 35599999963
No 362
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.54 E-value=1.1e-07 Score=66.17 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
..+++++|.+|+|||||+|.|.+..
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999753
No 363
>PRK13796 GTPase YqeH; Provisional
Probab=98.54 E-value=7.3e-07 Score=68.13 Aligned_cols=82 Identities=21% Similarity=0.390 Sum_probs=56.5
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHH----HHHHHcC
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQ----KLANKIR 153 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 153 (195)
.+.+++|+|+.|... .|...+.....+.|+++|+||+|+.... ...++.. .+++..+
T Consensus 70 ~~lIv~VVD~~D~~~------s~~~~L~~~~~~kpviLViNK~DLl~~~-------------~~~~~i~~~l~~~~k~~g 130 (365)
T PRK13796 70 DALVVNVVDIFDFNG------SWIPGLHRFVGNNPVLLVGNKADLLPKS-------------VKKNKVKNWLRQEAKELG 130 (365)
T ss_pred CcEEEEEEECccCCC------chhHHHHHHhCCCCEEEEEEchhhCCCc-------------cCHHHHHHHHHHHHHhcC
Confidence 348899999987432 2444555444478999999999996532 2222233 3344444
Q ss_pred C--ceeEEeccCCcccHHHHHHHHHHH
Q psy10443 154 A--VKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 154 ~--~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
. ..++.+||+++.|++++++.+.+.
T Consensus 131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 131 LRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 2 258999999999999999998765
No 364
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.52 E-value=3.7e-07 Score=79.22 Aligned_cols=113 Identities=20% Similarity=0.143 Sum_probs=61.5
Q ss_pred EEEEcCCCCchHHHHHHhhcCCCCCCc--ccce----eeccceeEEeCCEEEEEEEEeCCCC----c----cccccCCCC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTDSFPGEY--VPTV----FDNYSAPFTVDGIPVSLGLWDTAGQ----E----DYDRLRPLS 74 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~~~~~~~--~~t~----~~~~~~~~~~~~~~~~l~~~D~~G~----~----~~~~~~~~~ 74 (195)
-+|+|++|+||||++.+- +..++-.. .... +........+.+. -.++|++|. + .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHHHH
Confidence 479999999999999876 33332111 0110 1111111112222 238999992 1 112223333
Q ss_pred C---------CCccEEEEEEeCCChh-----cHHHHHH---hhHHHHhh-hCCCCcEEEEeeCCCcccc
Q psy10443 75 Y---------PQTDVFLICYSVVSPS-----SFDNVTS---KWYPELKH-HCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 75 ~---------~~~d~~i~v~d~~~~~-----s~~~~~~---~~~~~~~~-~~~~~p~vvv~nK~D~~~~ 125 (195)
+ +..+|+|+++|+++-- ....... ..+..+.. ..-.+||.|++||+|+..-
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 2 3589999999986521 1111111 12222222 3458999999999998754
No 365
>KOG1954|consensus
Probab=98.52 E-value=3.2e-07 Score=68.27 Aligned_cols=116 Identities=22% Similarity=0.276 Sum_probs=70.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCC---cccceeeccce------------eEEeCC-EE------------------
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGE---YVPTVFDNYSA------------PFTVDG-IP------------------ 53 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~---~~~t~~~~~~~------------~~~~~~-~~------------------ 53 (195)
=|+++|.=..||||+|+.|+...+++- ..||+...... ...++. ..
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~cs 139 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCS 139 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHh
Confidence 488999999999999999999877532 22333111100 011110 00
Q ss_pred -------EEEEEEeCCCCcc-----------ccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEE
Q psy10443 54 -------VSLGLWDTAGQED-----------YDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIIL 115 (195)
Q Consensus 54 -------~~l~~~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vv 115 (195)
=.+.++|+||--. |......+...+|.++++||+..-+--.+.. ..+..++.+ .-.+-|
T Consensus 140 qmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~-~vi~aLkG~--EdkiRV 216 (532)
T KOG1954|consen 140 QLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFK-RVIDALKGH--EDKIRV 216 (532)
T ss_pred cCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHH-HHHHHhhCC--cceeEE
Confidence 1277999999311 1233344667899999999987544333333 244555544 345667
Q ss_pred EeeCCCcccch
Q psy10443 116 VGTKIDLREDR 126 (195)
Q Consensus 116 v~nK~D~~~~~ 126 (195)
|.||+|...+.
T Consensus 217 VLNKADqVdtq 227 (532)
T KOG1954|consen 217 VLNKADQVDTQ 227 (532)
T ss_pred EeccccccCHH
Confidence 78999988764
No 366
>KOG1491|consensus
Probab=98.49 E-value=1.4e-07 Score=69.35 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=58.2
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeC---------------CEEEEEEEEeCCCCcccc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVD---------------GIPVSLGLWDTAGQEDYD 68 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~---------------~~~~~l~~~D~~G~~~~~ 68 (195)
..+++.++|.|+|||||+.|.|+.... +.+++.++.+.-...+.+. -....++++|++|--.-.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 457999999999999999999999754 4666666644333333322 233568899999843221
Q ss_pred ----cc---CCCCCCCccEEEEEEeCCC
Q psy10443 69 ----RL---RPLSYPQTDVFLICYSVVS 89 (195)
Q Consensus 69 ----~~---~~~~~~~~d~~i~v~d~~~ 89 (195)
.+ ...-++.+|+++-|+++..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 11 2233678999999999854
No 367
>PRK14974 cell division protein FtsY; Provisional
Probab=98.49 E-value=2.2e-07 Score=69.71 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=53.4
Q ss_pred EEEEEEeCCCCccccccC----CCC--CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchH
Q psy10443 54 VSLGLWDTAGQEDYDRLR----PLS--YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRE 127 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 127 (195)
+.+.++||+|........ ... ..+.|.+++|+|++...........+...+ + +--+|+||.|.....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-----~-~~giIlTKlD~~~~~- 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-----G-IDGVILTKVDADAKG- 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-----C-CCEEEEeeecCCCCc-
Confidence 457799999975432111 111 225788999999976433222211122211 1 346778999975542
Q ss_pred hhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHHH
Q psy10443 128 TLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQVF 172 (195)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 172 (195)
..+...+...+ .|+..++ +|++++++.
T Consensus 296 ---------------G~~ls~~~~~~-~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 296 ---------------GAALSIAYVIG-KPILFLG--VGQGYDDLI 322 (336)
T ss_pred ---------------cHHHHHHHHHC-cCEEEEe--CCCChhhcc
Confidence 22444445555 6777776 788887764
No 368
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.49 E-value=1.7e-05 Score=52.64 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=42.2
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTA 62 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~ 62 (195)
+-.+||++.|+|||||||++.++...-- +...+.+..+...+.-+++.+-+.+.|+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~--~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLR--EKGYKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHH--hcCceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 3468999999999999999998875321 11124555566667778888888888887
No 369
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.48 E-value=5e-07 Score=66.85 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=61.3
Q ss_pred CCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHH
Q psy10443 71 RPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLAN 150 (195)
Q Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (195)
....+..+|++++|+|+.++.+.... .+...+. +.|+++|+||+|+..... .+....+..
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~~----~kp~iiVlNK~DL~~~~~--------------~~~~~~~~~ 77 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSENP--MIDKIIG----NKPRLLILNKSDLADPEV--------------TKKWIEYFE 77 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCCh--hHHHHhC----CCCEEEEEEchhcCCHHH--------------HHHHHHHHH
Confidence 45567899999999999877553321 1222222 689999999999864311 111122222
Q ss_pred HcCCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 151 KIRAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 151 ~~~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
..+ .+++.+|++++.|++++.+.+.+.+...
T Consensus 78 ~~~-~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 78 EQG-IKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred HcC-CeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 333 5689999999999999999988876543
No 370
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.47 E-value=4.1e-07 Score=68.21 Aligned_cols=55 Identities=25% Similarity=0.248 Sum_probs=36.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~ 64 (195)
+.+++.|+|.||||||||||+|.+.... .+.++++.... .+.++. .+.++||||-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q--~i~~~~---~i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ--WIKLDD---GIYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceE--EEEcCC---CeEEecCCCc
Confidence 4588999999999999999999987541 22222222111 122222 2569999994
No 371
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.44 E-value=6.4e-07 Score=60.23 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=36.0
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCC--CCCcccceeeccceeEEeCCEEEEEEEEeCCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSF--PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAG 63 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G 63 (195)
...+++++|.+|+|||||+|.+.+... ......++..... ...+ . .+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~-~--~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD-N--KIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec-C--CEEEEECCC
Confidence 467899999999999999999998542 1222333333222 2222 2 356999998
No 372
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.44 E-value=2.1e-05 Score=60.03 Aligned_cols=152 Identities=18% Similarity=0.251 Sum_probs=90.9
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC-----------------CCC----CCcccceeeccc----eeEEe-CCEEEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD-----------------SFP----GEYVPTVFDNYS----APFTV-DGIPVSLGLW 59 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~-----------------~~~----~~~~~t~~~~~~----~~~~~-~~~~~~l~~~ 59 (195)
.+=|.|+|+-.+||||||.||... .++ +...-|++..|- ..+.+ ++..+++.+.
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 466899999999999999999763 111 122222333321 23334 5778889999
Q ss_pred eCCC--------Cc-----cc-cccCCC---------------CCC--CccEEEEEEeCC----ChhcHHHHHHhhHHHH
Q psy10443 60 DTAG--------QE-----DY-DRLRPL---------------SYP--QTDVFLICYSVV----SPSSFDNVTSKWYPEL 104 (195)
Q Consensus 60 D~~G--------~~-----~~-~~~~~~---------------~~~--~~d~~i~v~d~~----~~~s~~~~~~~~~~~~ 104 (195)
|+-| +. +. ..-|.. .++ ..-|+++.-|-| .++++.++.++-...+
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 9876 11 11 011111 111 123555555543 3567777776667777
Q ss_pred hhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCC--cccHHHHHHH
Q psy10443 105 KHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALT--QRGLRQVFDE 174 (195)
Q Consensus 105 ~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~v~~~~~~ 174 (195)
+.. +.|+++++|-.+-... ...+...++..+|+ ++++.+++.. .+.+..+++.
T Consensus 177 k~i--gKPFvillNs~~P~s~--------------et~~L~~eL~ekY~-vpVlpvnc~~l~~~DI~~Il~~ 231 (492)
T PF09547_consen 177 KEI--GKPFVILLNSTKPYSE--------------ETQELAEELEEKYD-VPVLPVNCEQLREEDITRILEE 231 (492)
T ss_pred HHh--CCCEEEEEeCCCCCCH--------------HHHHHHHHHHHHhC-CcEEEeehHHcCHHHHHHHHHH
Confidence 766 8999999998885544 23345667777888 6887776543 3344444443
No 373
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.43 E-value=2.6e-07 Score=61.81 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
--++++|.+|||||||+|.|...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36789999999999999999986
No 374
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.38 E-value=8.7e-06 Score=61.00 Aligned_cols=142 Identities=13% Similarity=0.127 Sum_probs=77.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCC----------CCcccce-------eeccceeEEe------------------
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFP----------GEYVPTV-------FDNYSAPFTV------------------ 49 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~----------~~~~~t~-------~~~~~~~~~~------------------ 49 (195)
++--|+++|++|+||||++..+...-.. +.+.... .......+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999887653100 0000000 0000001000
Q ss_pred CCEEEEEEEEeCCCCcccccc--------C----CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEe
Q psy10443 50 DGIPVSLGLWDTAGQEDYDRL--------R----PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVG 117 (195)
Q Consensus 50 ~~~~~~l~~~D~~G~~~~~~~--------~----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~ 117 (195)
....+.+.++||||....... . ...-...+..++|+|++.... .+.+ ....... --+.-+|+
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~-a~~f~~~---~~~~giIl 266 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQ-AKAFHEA---VGLTGIIL 266 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHH-HHHHHhh---CCCCEEEE
Confidence 123356779999996543211 0 111235678999999985422 2221 1111111 12447888
Q ss_pred eCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHH
Q psy10443 118 TKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQV 171 (195)
Q Consensus 118 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 171 (195)
||.|.... ...+.......+ .|+..++ +|++++++
T Consensus 267 TKlD~t~~----------------~G~~l~~~~~~~-~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 267 TKLDGTAK----------------GGVVFAIADELG-IPIKFIG--VGEGIDDL 301 (318)
T ss_pred ECCCCCCC----------------ccHHHHHHHHHC-CCEEEEe--CCCChhhC
Confidence 99995433 223455556666 6887777 77877665
No 375
>KOG1534|consensus
Probab=98.38 E-value=1.7e-06 Score=59.71 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=49.6
Q ss_pred CCcEEEEeeCCCcccchHhhhhhhhcCCCC-----------c------cHHHHHHHHHHcCCceeEEeccCCcccHHHHH
Q psy10443 110 DAPIILVGTKIDLREDRETLNLLSEQNLSP-----------V------KREQGQKLANKIRAVKYMECSALTQRGLRQVF 172 (195)
Q Consensus 110 ~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~-----------~------~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 172 (195)
.+|-+=|++|.|+.........-+.+.+.. . ....+..+...++.+.|++....+.++++.++
T Consensus 164 E~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL 243 (273)
T KOG1534|consen 164 EVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIIL 243 (273)
T ss_pred cCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHH
Confidence 689999999999988744333322222111 1 11234556667888899999999999999999
Q ss_pred HHHHHHHc
Q psy10443 173 DEAVRAVL 180 (195)
Q Consensus 173 ~~l~~~~~ 180 (195)
..|-..+.
T Consensus 244 ~~ID~aiQ 251 (273)
T KOG1534|consen 244 SYIDDAIQ 251 (273)
T ss_pred HHHHHHHH
Confidence 99888765
No 376
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.38 E-value=1.2e-06 Score=58.98 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=18.8
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
++++|..|+||||+++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999998764
No 377
>KOG0085|consensus
Probab=98.36 E-value=3.6e-07 Score=63.89 Aligned_cols=129 Identities=13% Similarity=0.184 Sum_probs=74.7
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCCh----------hcHHHHHHhhHHHHhhh--CCCCcEEEEeeCC
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSP----------SSFDNVTSKWYPELKHH--CPDAPIILVGTKI 120 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~~p~vvv~nK~ 120 (195)
++.+.+.|++|+..-+.-|.+++++...++|++.++.. ...++... +...+-.+ +.+.++++..||.
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkA-LFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHH-HHHHHhccccccCCceEEEechh
Confidence 34466778888777777777777777777766665432 12222221 22222222 3478999999999
Q ss_pred CcccchHhhhhhhhcCC----CCccHHHHHHHHHHc---------CCceeEEeccCCcccHHHHHHHHHHHHcCC
Q psy10443 121 DLREDRETLNLLSEQNL----SPVKREQGQKLANKI---------RAVKYMECSALTQRGLRQVFDEAVRAVLRP 182 (195)
Q Consensus 121 D~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---------~~~~~~~~Sa~~~~~v~~~~~~l~~~~~~~ 182 (195)
|+.++...-.-..+.-+ -..+.+.+++|..+. ..+.-..+.|.+.+|++-+|.++.+.+...
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~ 351 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 351 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence 99876533221111111 112223344444332 112235578889999999999998887654
No 378
>PRK12288 GTPase RsgA; Reviewed
Probab=98.33 E-value=1.1e-06 Score=66.52 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEcCCCCchHHHHHHhhcCC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~~ 30 (195)
++|+|.+|||||||+|+|.+..
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEEECCCCCCHHHHHHHhcccc
Confidence 7899999999999999999753
No 379
>PRK01889 GTPase RsgA; Reviewed
Probab=98.32 E-value=7.6e-06 Score=62.38 Aligned_cols=84 Identities=23% Similarity=0.192 Sum_probs=56.6
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
..++|.+++|+++..+-... ..+.++..+... ++|.++|+||+|+..... +....+......
T Consensus 110 aANvD~vliV~s~~p~~~~~-~ldr~L~~a~~~--~i~piIVLNK~DL~~~~~---------------~~~~~~~~~~~g 171 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLR-RIERYLALAWES--GAEPVIVLTKADLCEDAE---------------EKIAEVEALAPG 171 (356)
T ss_pred EEeCCEEEEEEecCCCCChh-HHHHHHHHHHHc--CCCEEEEEEChhcCCCHH---------------HHHHHHHHhCCC
Confidence 46889999999996433332 333465555554 788899999999975421 111222222223
Q ss_pred ceeEEeccCCcccHHHHHHHHH
Q psy10443 155 VKYMECSALTQRGLRQVFDEAV 176 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~ 176 (195)
.+++.+|++++.|++++..+|.
T Consensus 172 ~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 172 VPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred CcEEEEECCCCccHHHHHHHhh
Confidence 6889999999999999988874
No 380
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.30 E-value=2.8e-06 Score=62.30 Aligned_cols=94 Identities=12% Similarity=0.088 Sum_probs=54.1
Q ss_pred EEEEEEEeCCCCccccccC------------CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCC
Q psy10443 53 PVSLGLWDTAGQEDYDRLR------------PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKI 120 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~ 120 (195)
.+.+.++||||........ ...-..+|.+++|+|++... ..+. .. ..+.+.. -+--+|+||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~-~~f~~~~--~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QA-KVFNEAV--GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HH-HHHHhhC--CCCEEEEEcc
Confidence 3567799999975433221 11123489999999997432 2222 11 2222111 1457888999
Q ss_pred CcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCcccHHHH
Q psy10443 121 DLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQRGLRQV 171 (195)
Q Consensus 121 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 171 (195)
|..... ..+.......+ .|+..++ +|++++++
T Consensus 228 De~~~~----------------G~~l~~~~~~~-~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 228 DGTAKG----------------GIILSIAYELK-LPIKFIG--VGEKIDDL 259 (272)
T ss_pred CCCCCc----------------cHHHHHHHHHC-cCEEEEe--CCCChHhC
Confidence 975542 23444455555 6777776 67777665
No 381
>KOG0464|consensus
Probab=98.29 E-value=7.3e-08 Score=72.69 Aligned_cols=116 Identities=19% Similarity=0.121 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC--CC--CC--Ccccceee-----------ccceeEEeCCEEEEEEEEeCCCCccccc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD--SF--PG--EYVPTVFD-----------NYSAPFTVDGIPVSLGLWDTAGQEDYDR 69 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~--~~--~~--~~~~t~~~-----------~~~~~~~~~~~~~~l~~~D~~G~~~~~~ 69 (195)
-+|.++..-.+||||.-.|++.- .. .+ ....|..+ ..+..++++-+.++++++|+||+-.|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 47889999999999999887542 11 00 01111111 1123455566677888999999999998
Q ss_pred cCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 70 LRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
....+++-.|+++.|+|++..-.-+.+. .|.+.-+. ++|....+||+|....+
T Consensus 118 everclrvldgavav~dasagve~qtlt-vwrqadk~---~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTLT-VWRQADKF---KIPAHCFINKMDKLAAN 170 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcccceee-eehhcccc---CCchhhhhhhhhhhhhh
Confidence 8889999999999999998765555554 47654443 68889999999986543
No 382
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.27 E-value=1.5e-05 Score=58.41 Aligned_cols=99 Identities=19% Similarity=0.166 Sum_probs=71.6
Q ss_pred ccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHH
Q psy10443 65 EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQ 144 (195)
Q Consensus 65 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
++-..+.+.-..+.|-+++|+.+.+|+--....++++-..... ++..+|++||+|+....+ ...++
T Consensus 67 ~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~------------~~~~~ 132 (301)
T COG1162 67 PRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEE------------AAVKE 132 (301)
T ss_pred cccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchH------------HHHHH
Confidence 3444555556667899999999999876666655555555544 788888899999988743 11134
Q ss_pred HHHHHHHcCCceeEEeccCCcccHHHHHHHHHHH
Q psy10443 145 GQKLANKIRAVKYMECSALTQRGLRQVFDEAVRA 178 (195)
Q Consensus 145 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 178 (195)
...+...++ .+++.+|+++++|++++...+...
T Consensus 133 ~~~~y~~~g-y~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 133 LLREYEDIG-YPVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred HHHHHHhCC-eeEEEecCcCcccHHHHHHHhcCC
Confidence 555666677 789999999999999988877654
No 383
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.25 E-value=3.2e-06 Score=60.31 Aligned_cols=87 Identities=17% Similarity=0.117 Sum_probs=50.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC--CCCC--CcccceeeccceeEEe-CCEEEEEEEEeCCCCcccccc------CCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD--SFPG--EYVPTVFDNYSAPFTV-DGIPVSLGLWDTAGQEDYDRL------RPL 73 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~--~~~~--~~~~t~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~------~~~ 73 (195)
+-.-|.|+|++++|||+|+|.|++. .|.. ...+++..-....... .+....+.++||+|-...... ...
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 3456899999999999999999998 5532 1223332211111111 123456779999996543221 111
Q ss_pred CCCC--ccEEEEEEeCCChh
Q psy10443 74 SYPQ--TDVFLICYSVVSPS 91 (195)
Q Consensus 74 ~~~~--~d~~i~v~d~~~~~ 91 (195)
.+.. ++.+|+..+.+...
T Consensus 86 ~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 86 ALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHhCEEEEeccCcccH
Confidence 2222 68788777765443
No 384
>KOG0447|consensus
Probab=98.25 E-value=7.6e-06 Score=64.17 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=43.3
Q ss_pred EEEEEeCCCC-------------ccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCC
Q psy10443 55 SLGLWDTAGQ-------------EDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKID 121 (195)
Q Consensus 55 ~l~~~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D 121 (195)
++.+.|+||- +....+...++.+.+++|+|+---+-+........+...+.- .+...++|++|.|
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP--~GrRTIfVLTKVD 490 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDP--HGRRTIFVLTKVD 490 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCC--CCCeeEEEEeecc
Confidence 4678999992 222355667888999999998633222222222212223322 2678899999999
Q ss_pred cccc
Q psy10443 122 LRED 125 (195)
Q Consensus 122 ~~~~ 125 (195)
+++.
T Consensus 491 lAEk 494 (980)
T KOG0447|consen 491 LAEK 494 (980)
T ss_pred hhhh
Confidence 9876
No 385
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.24 E-value=1.9e-06 Score=65.71 Aligned_cols=109 Identities=14% Similarity=0.096 Sum_probs=57.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC-------CCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCC-----
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF-------PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLS----- 74 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~----- 74 (195)
.++.++|.+|||||||+|++++... ...++.|+.... .+.++ .. +.++||||-.....+ ..+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~-~~--~~l~DtPG~~~~~~~-~~~l~~~~ 228 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLD-DG--HSLYDTPGIINSHQM-AHYLDKKD 228 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeC-CC--CEEEECCCCCChhHh-hhhcCHHH
Confidence 4899999999999999999997432 122223332211 12221 12 349999995432211 111
Q ss_pred ------CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 75 ------YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 75 ------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
-.......+.++....-.+..+. ++..+.. ++..+.+.+++.+..+.
T Consensus 229 l~~~~~~~~i~~~~~~l~~~q~~~~ggl~--~~d~~~~--~~~~~~~~~~~~~~~h~ 281 (360)
T TIGR03597 229 LKYITPKKEIKPKTYQLNPNQTLFLGGLA--RFDYLKG--EKTSFTFYVSNELNIHR 281 (360)
T ss_pred HhhcCCCCccCceEEEeCCCCEEEEceEE--EEEEecC--CceEEEEEccCCceeEe
Confidence 12345566666644322222221 2222222 24567777777776654
No 386
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.21 E-value=2.4e-06 Score=63.20 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
-.++++|.+|+|||||+|.|.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 468999999999999999999854
No 387
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.20 E-value=5e-06 Score=45.08 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=30.0
Q ss_pred ccEEEEEEeCCChhcH--HHHHHhhHHHHhhhCCCCcEEEEeeCCC
Q psy10443 78 TDVFLICYSVVSPSSF--DNVTSKWYPELKHHCPDAPIILVGTKID 121 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~vvv~nK~D 121 (195)
.++++|++|++....+ ++.. .++..++..+++.|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~-~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQL-SLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHH-HHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHH-HHHHHHHHHcCCCCEEEEEeccC
Confidence 5789999999976554 4444 47788888889999999999998
No 388
>KOG3859|consensus
Probab=98.19 E-value=1.4e-05 Score=57.65 Aligned_cols=120 Identities=20% Similarity=0.251 Sum_probs=72.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccc-----eeEEeCCEEEEEEEEeCCCC-------cccccc--
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYS-----APFTVDGIPVSLGLWDTAGQ-------EDYDRL-- 70 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-----~~~~~~~~~~~l~~~D~~G~-------~~~~~~-- 70 (195)
=.|+|+.+|..|.|||||+..|++..+.....+....... +...-.+..+++.+.|+.|- +.|...
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 3689999999999999999999998775444443333221 22223466678889999882 112100
Q ss_pred -----C-------------CCCCC--CccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHh
Q psy10443 71 -----R-------------PLSYP--QTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRET 128 (195)
Q Consensus 71 -----~-------------~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~ 128 (195)
. ...+. ..+++++.+..+- .++..+.-.....+. ..+.++-++-|.|.....+.
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld---skVNIIPvIAKaDtisK~eL 194 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD---SKVNIIPVIAKADTISKEEL 194 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh---hhhhhHHHHHHhhhhhHHHH
Confidence 0 00111 3577777777763 344444322233333 35667777789998765543
No 389
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.18 E-value=2.7e-06 Score=61.52 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|.+|||||||+|.|.+.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 6889999999999999999975
No 390
>PRK12289 GTPase RsgA; Reviewed
Probab=98.18 E-value=2.7e-06 Score=64.42 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++|+|.+|||||||+|.|.+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 3799999999999999999975
No 391
>KOG3929|consensus
Probab=98.17 E-value=1e-06 Score=62.61 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=85.9
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEE--EEEEEEeCCCCccccccCCCCCC----C
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIP--VSLGLWDTAGQEDYDRLRPLSYP----Q 77 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~l~~~D~~G~~~~~~~~~~~~~----~ 77 (195)
..+.-|++.|+.+. |++|++.+.+.- ....|+....++......+.+ -..++|.++|......+..--++ .
T Consensus 43 ~~E~~I~~~Gn~~~--tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~ 119 (363)
T KOG3929|consen 43 KFEFFIGSKGNGGK--TTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR 119 (363)
T ss_pred cceeEEEEecCCce--eEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh
Confidence 34567888876654 999999987643 334556655555444444432 34679999886554433332222 2
Q ss_pred ccEEEEEEeCCChhcHHHHHHhhHHHHh--------------------------hh----CC--------CCcEEEEeeC
Q psy10443 78 TDVFLICYSVVSPSSFDNVTSKWYPELK--------------------------HH----CP--------DAPIILVGTK 119 (195)
Q Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~--------------------------~~----~~--------~~p~vvv~nK 119 (195)
.-.+|++.|+++++.+....+..+..++ +. .+ .+||+||+.|
T Consensus 120 ~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsK 199 (363)
T KOG3929|consen 120 TFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSK 199 (363)
T ss_pred hhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccc
Confidence 3467899999998665432221111111 10 01 3799999999
Q ss_pred CCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccC
Q psy10443 120 IDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSAL 163 (195)
Q Consensus 120 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 163 (195)
.|.-+..+++. |.....-.+..+..+|+ ..+..|++
T Consensus 200 YDvFq~Fesek-------RkH~C~~LRf~Ah~yGa-aLlmfSsk 235 (363)
T KOG3929|consen 200 YDVFQDFESEK-------RKHICKTLRFVAHYYGA-ALLMFSSK 235 (363)
T ss_pred hhhhccccHHH-------HHHHHHHHHHHHHHhhh-HHHHHHHh
Confidence 99877654333 22333334555556663 34445655
No 392
>KOG0469|consensus
Probab=98.16 E-value=4.9e-06 Score=64.53 Aligned_cols=119 Identities=20% Similarity=0.216 Sum_probs=78.2
Q ss_pred CCCCcc-eEEEEEcCCCCchHHHHHHhhcCC--CC------CCcccceeeccceeEEe----------------------
Q psy10443 1 MSSGRP-IKCVVVGDGTVGKTCMLISYTTDS--FP------GEYVPTVFDNYSAPFTV---------------------- 49 (195)
Q Consensus 1 m~~~~~-~~i~v~G~~~~GKtsli~~l~~~~--~~------~~~~~t~~~~~~~~~~~---------------------- 49 (195)
|.+.+. -++-|+-.-..|||||-..|.... +. ..+..|..+.....+++
T Consensus 13 M~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~ 92 (842)
T KOG0469|consen 13 MDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE 92 (842)
T ss_pred hccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence 334333 478899999999999999887631 11 11222222222111111
Q ss_pred -CCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 50 -DGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 50 -~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
++..+.++++|.|||-.|.+.....++-.|+.++|+|.-+.--.+.-. .+.+.+.+. +.-+++.||.|.+
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTET-VLrQA~~ER---IkPvlv~NK~DRA 163 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIAER---IKPVLVMNKMDRA 163 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHH-HHHHHHHhh---ccceEEeehhhHH
Confidence 244577889999999999999999999999999999988764444322 244555543 4446678999964
No 393
>KOG0459|consensus
Probab=98.13 E-value=9.7e-06 Score=61.18 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=92.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC--CCCCC---------------------cccceee------cc---ceeEEeCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD--SFPGE---------------------YVPTVFD------NY---SAPFTVDG 51 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~--~~~~~---------------------~~~t~~~------~~---~~~~~~~~ 51 (195)
+.+++++++|.-.+||||+-..+... ..... +..|... .. ...+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 56899999999999999998776542 00000 0000000 00 01111222
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChh---cHHHH-HHhhHHHHhhhCCCCcEEEEeeCCCcccchH
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPS---SFDNV-TSKWYPELKHHCPDAPIILVGTKIDLREDRE 127 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~-~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~ 127 (195)
-++.+.|.|||..|....-....+||..++|+++.-.+ .|+.- +..=...+.+...-...++++||+|-...+-
T Consensus 157 --~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 157 --KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred --eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 35669999999998777666777899999999874321 11100 0011122222233457888999999765432
Q ss_pred hhhhhhhcCCCCccHHHHHHHHHHcC-----CceeEEeccCCcccHHHHHH
Q psy10443 128 TLNLLSEQNLSPVKREQGQKLANKIR-----AVKYMECSALTQRGLRQVFD 173 (195)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~~~~ 173 (195)
..+.++ ...+....|.+..+ ...++++|..+|.++.+...
T Consensus 235 s~eRy~------E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 235 SNERYE------ECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred chhhHH------HHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 222111 11233444555332 24589999999999887653
No 394
>PRK13796 GTPase YqeH; Provisional
Probab=98.13 E-value=3.7e-06 Score=64.27 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
..++.++|.+|||||||+|+|...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhh
Confidence 347999999999999999999864
No 395
>KOG4273|consensus
Probab=98.11 E-value=9.6e-05 Score=52.60 Aligned_cols=170 Identities=15% Similarity=0.211 Sum_probs=97.7
Q ss_pred eEEEEEcCCCC--chHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEE--EEEEeCCCCccccccCCCCCCCccEEE
Q psy10443 7 IKCVVVGDGTV--GKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVS--LGLWDTAGQEDYDRLRPLSYPQTDVFL 82 (195)
Q Consensus 7 ~~i~v~G~~~~--GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--l~~~D~~G~~~~~~~~~~~~~~~d~~i 82 (195)
-.++|+|-+|+ ||.+++++|....|..+........+ ..-+++.+.|. +.+.-.+-.+.+.--.........+++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~-hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEF-HGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceee-eceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 35789999999 99999999988766433222221111 12233433332 222222222233222233344567899
Q ss_pred EEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHh---------------hhhhhhcCCC---------
Q psy10443 83 ICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRET---------------LNLLSEQNLS--------- 138 (195)
Q Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~---------------~~~~~~~~~~--------- 138 (195)
+|+|.+....+..+.. |+.-..-+.-+ -++.++||.|.....-. ...+....-.
T Consensus 84 mvfdlse~s~l~alqd-wl~htdinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss 161 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQD-WLPHTDINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS 161 (418)
T ss_pred EEEeccchhhhHHHHh-hccccccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence 9999998888887774 87654433222 24667899997642210 0111110000
Q ss_pred --------CccHHHHHHHHHHcCCceeEEeccCC------------cccHHHHHHHHHHHHc
Q psy10443 139 --------PVKREQGQKLANKIRAVKYMECSALT------------QRGLRQVFDEAVRAVL 180 (195)
Q Consensus 139 --------~~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~v~~~~~~l~~~~~ 180 (195)
........+|+.+++ +.+++.++.+ ..|++.+|.++.-.+.
T Consensus 162 llgsedasldirga~lewc~e~~-~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw 222 (418)
T KOG4273|consen 162 LLGSEDASLDIRGAALEWCLEHG-FEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW 222 (418)
T ss_pred ccccccchhhHHHHHHHHHHhcC-ceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence 012334678899998 7899988842 3578888888776554
No 396
>PRK00098 GTPase RsgA; Reviewed
Probab=98.10 E-value=5.8e-06 Score=61.56 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
-.++++|.+|+|||||+|.|.+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 358899999999999999999753
No 397
>KOG1533|consensus
Probab=98.07 E-value=2.2e-05 Score=55.21 Aligned_cols=119 Identities=17% Similarity=0.134 Sum_probs=63.1
Q ss_pred EEEEeCCCCccccccCCC------CCCCccEEEE---EEeC---CChhcHHHHH-HhhHHHHhhhCCCCcEEEEeeCCCc
Q psy10443 56 LGLWDTAGQEDYDRLRPL------SYPQTDVFLI---CYSV---VSPSSFDNVT-SKWYPELKHHCPDAPIILVGTKIDL 122 (195)
Q Consensus 56 l~~~D~~G~~~~~~~~~~------~~~~~d~~i~---v~d~---~~~~s~~~~~-~~~~~~~~~~~~~~p~vvv~nK~D~ 122 (195)
.-++|+|||-++...+.. +++.-+.=+. ++|+ ++|..+-... ..+..++. -..|-|=|+.|+|+
T Consensus 99 Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~---melphVNvlSK~Dl 175 (290)
T KOG1533|consen 99 YVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH---MELPHVNVLSKADL 175 (290)
T ss_pred EEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh---hcccchhhhhHhHH
Confidence 449999998765432221 2223333333 3333 5566554432 11222222 26788888999999
Q ss_pred ccchHh-----------hhh-----hhhcCCC----CccHHHHHHHHHHcCCceeEEeccCCcccHHHHHHHHHH
Q psy10443 123 REDRET-----------LNL-----LSEQNLS----PVKREQGQKLANKIRAVKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 123 ~~~~~~-----------~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
...... ... ..+..++ ....+++-.+...++.+.|...+..+.+++-.+...|-+
T Consensus 176 ~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~IDk 250 (290)
T KOG1533|consen 176 LKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTIDK 250 (290)
T ss_pred HHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHHh
Confidence 764431 000 0011111 122344556677777777777777777777777666554
No 398
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.07 E-value=1.1e-05 Score=62.40 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhh
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~ 27 (195)
++.-|+++|.+||||||++..|.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999998886
No 399
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.05 E-value=2.2e-05 Score=52.31 Aligned_cols=58 Identities=12% Similarity=0.057 Sum_probs=36.2
Q ss_pred EEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCC
Q psy10443 53 PVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKID 121 (195)
Q Consensus 53 ~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D 121 (195)
.+.+.++|++|.... ...++..+|-+++|...+-.+.+.-.. + ..+. .-=++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k--~-~~~~-----~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIK--A-GIME-----IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhh--h-hHhh-----hcCEEEEeCCC
Confidence 456779999885432 234888999999998877444433322 2 2222 12277789987
No 400
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.03 E-value=6.8e-06 Score=60.18 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.+++|.+|||||||+|+|...
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 5688999999999999999974
No 401
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.01 E-value=0.00012 Score=50.30 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=55.2
Q ss_pred EEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhh
Q psy10443 52 IPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNL 131 (195)
Q Consensus 52 ~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~ 131 (195)
..+.+.++|+|+.... .....+..+|.+++++..+ ..+...+.. +...++.. +.|+.+|+||+|....
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~~~-~~~~l~~~--~~~~~vV~N~~~~~~~------ 158 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDLER-AVELVRHF--GIPVGVVINKYDLNDE------ 158 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHHHH-HHHHHHHc--CCCEEEEEeCCCCCcc------
Confidence 4567779999865322 2234567899999999987 345555543 55555544 5678999999996432
Q ss_pred hhhcCCCCccHHHHHHHHHHcCCceeE
Q psy10443 132 LSEQNLSPVKREQGQKLANKIRAVKYM 158 (195)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (195)
..++..++.+.++ ++++
T Consensus 159 ---------~~~~~~~~~~~~~-~~vl 175 (179)
T cd03110 159 ---------IAEEIEDYCEEEG-IPIL 175 (179)
T ss_pred ---------hHHHHHHHHHHcC-CCeE
Confidence 1245566666666 4544
No 402
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.00 E-value=9.3e-06 Score=63.22 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.7
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++..|+++|.+|+||||.+..|..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467899999999999999977754
No 403
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.99 E-value=1.1e-05 Score=56.28 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|.-|+++|++||||||.+-+|..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa 23 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA 23 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHH
Confidence 34689999999999999977654
No 404
>PRK13695 putative NTPase; Provisional
Probab=97.98 E-value=0.00014 Score=49.76 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++|++.|.+|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998654
No 405
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=4.4e-05 Score=65.58 Aligned_cols=116 Identities=20% Similarity=0.117 Sum_probs=58.7
Q ss_pred EEEcCCCCchHHHHHHhhcC-CCCCCcccceeeccceeEEeC-CEEEEEEEEeCCCCc--------cccccCCC------
Q psy10443 10 VVVGDGTVGKTCMLISYTTD-SFPGEYVPTVFDNYSAPFTVD-GIPVSLGLWDTAGQE--------DYDRLRPL------ 73 (195)
Q Consensus 10 ~v~G~~~~GKtsli~~l~~~-~~~~~~~~t~~~~~~~~~~~~-~~~~~l~~~D~~G~~--------~~~~~~~~------ 73 (195)
+|+|++|+||||++..--.. .+............ .+..++ .-.=.-.++||+|.- .-...|..
T Consensus 129 ~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~-gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLk 207 (1188)
T COG3523 129 MVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGP-GTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLK 207 (1188)
T ss_pred EEecCCCCCcchHHhcccccCcchhhhccccccCC-CCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHHH
Confidence 68999999999998543221 11111111110000 011111 000122388998832 11222332
Q ss_pred ---CCCCccEEEEEEeCCChhcH--HHH---HHhh---HHHHhhh-CCCCcEEEEeeCCCcccch
Q psy10443 74 ---SYPQTDVFLICYSVVSPSSF--DNV---TSKW---YPELKHH-CPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 74 ---~~~~~d~~i~v~d~~~~~s~--~~~---~~~~---~~~~~~~-~~~~p~vvv~nK~D~~~~~ 126 (195)
..+..+|+|+.+|+++--.. .+. ...+ ++.+... .-..||.+++||.|+..-.
T Consensus 208 k~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF 272 (1188)
T COG3523 208 KYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGF 272 (1188)
T ss_pred HhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccH
Confidence 24568999999998652111 111 1111 2222222 3579999999999998743
No 406
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.85 E-value=0.00018 Score=50.79 Aligned_cols=49 Identities=12% Similarity=0.056 Sum_probs=33.0
Q ss_pred CCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 72 PLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
+...+++|.+|+|+|.+- .++..+. +......+. .=.++.+|+||.|..
T Consensus 150 Rg~~~~vD~vivVvDpS~-~sl~tae-ri~~L~~el-g~k~i~~V~NKv~e~ 198 (255)
T COG3640 150 RGTIEGVDLVIVVVDPSY-KSLRTAE-RIKELAEEL-GIKRIFVVLNKVDEE 198 (255)
T ss_pred cccccCCCEEEEEeCCcH-HHHHHHH-HHHHHHHHh-CCceEEEEEeeccch
Confidence 455678999999999873 4444443 233333333 237899999999965
No 407
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.84 E-value=0.00016 Score=55.17 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-.++++|++|+||||++.+|...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999888753
No 408
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=4.6e-05 Score=58.27 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++-.|+++|+.|+||||++..|..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999988864
No 409
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.79 E-value=7.9e-05 Score=58.01 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=19.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhh
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~ 27 (195)
++.-++++|.+|+||||++..|.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHH
Confidence 46789999999999999975543
No 410
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=0.00013 Score=56.57 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-.++++|+.|+||||++..|.+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999987765
No 411
>PRK10867 signal recognition particle protein; Provisional
Probab=97.78 E-value=0.00012 Score=57.02 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=19.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhh
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~ 27 (195)
++.-|+++|.+|+||||++..|.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHH
Confidence 46789999999999999776554
No 412
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.75 E-value=0.00037 Score=52.37 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=18.1
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 466799999999999999864
No 413
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.75 E-value=3.3e-05 Score=54.56 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=25.7
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
|.+.++..|+|.|.+|||||||.+.+...
T Consensus 1 ~~~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 1 MMMKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55678999999999999999999998763
No 414
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.73 E-value=0.0014 Score=49.35 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=18.4
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++-|.=||||||++++++..
T Consensus 4 tvitGFLGsGKTTlL~~lL~~ 24 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLAN 24 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhc
Confidence 467788999999999999875
No 415
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.72 E-value=0.00023 Score=48.66 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=30.0
Q ss_pred cEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccch
Q psy10443 79 DVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDR 126 (195)
Q Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~ 126 (195)
|++++|+|+.++.+-... .+...+.-...+.|+++|+||+|+....
T Consensus 1 DvVl~VvDar~p~~~~~~--~i~~~~~l~~~~kp~IlVlNK~DL~~~~ 46 (172)
T cd04178 1 DVILEVLDARDPLGCRCP--QVEEAVLQAGGNKKLVLVLNKIDLVPKE 46 (172)
T ss_pred CEEEEEEECCCCCCCCCH--HHHHHHHhccCCCCEEEEEehhhcCCHH
Confidence 789999999886433221 1333321112368999999999997643
No 416
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00014 Score=57.71 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-.|+|+|..|+||||++..|..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999988764
No 417
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.71 E-value=3e-05 Score=49.66 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.|+|.|.+||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 418
>KOG1424|consensus
Probab=97.71 E-value=4.5e-05 Score=59.32 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=34.6
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCC--CCcccceeeccceeEEeCCEEEEEEEEeCCCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFP--GEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~ 64 (195)
.+.|.+||-|||||||.||.|.++.-. ...++.+.- |. ++.+. . .+.++|+||-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKH-FQ-Ti~ls-~--~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKH-FQ-TIFLS-P--SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcce-eE-EEEcC-C--CceecCCCCc
Confidence 488999999999999999999997532 111111111 11 22222 2 2449999995
No 419
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.70 E-value=0.00013 Score=49.86 Aligned_cols=66 Identities=17% Similarity=0.078 Sum_probs=36.4
Q ss_pred EEEEEEeCCCCcccccc----CCCC--CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccc
Q psy10443 54 VSLGLWDTAGQEDYDRL----RPLS--YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLRED 125 (195)
Q Consensus 54 ~~l~~~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~ 125 (195)
+.+.+.|++|...+... ...+ ....+.+++|+|+....+... +...+.... + ..-+|.||.|....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~----~~~~~~~~~-~-~~~viltk~D~~~~ 154 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVN----QAKAFNEAL-G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHH----HHHHHHhhC-C-CCEEEEECCcCCCC
Confidence 44668999996422110 1111 124899999999865433221 222222221 2 35677799997654
No 420
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.68 E-value=5.2e-05 Score=51.59 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=31.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDT 61 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~ 61 (195)
+|++.|.+|+||||+++++...-- .... .....++....-++..+-+.+.|+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~-~~~~-~v~Gf~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELK-KKGL-PVGGFYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHH-HTCG-GEEEEEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhh-ccCC-ccceEEeecccCCCceEEEEEEEC
Confidence 689999999999999999875311 0001 122333344445566666667777
No 421
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.67 E-value=5e-05 Score=51.68 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=25.4
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
|..+...-+.|+|.+|+|||||+.++...
T Consensus 1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence 67777778999999999999999999864
No 422
>PRK08118 topology modulation protein; Reviewed
Probab=97.66 E-value=3.8e-05 Score=52.24 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+|+|+|++|||||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998864
No 423
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.66 E-value=5.2e-05 Score=53.48 Aligned_cols=28 Identities=21% Similarity=0.168 Sum_probs=25.7
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|.+++..-|+|+|++|+|||||++.+.+
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 7788889999999999999999999875
No 424
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.63 E-value=0.0005 Score=54.32 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
--++++|+.|+||||.+..|..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 4689999999999999988875
No 425
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00025 Score=54.14 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-.++++|+.|+||||++..+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999988764
No 426
>PRK07261 topology modulation protein; Provisional
Probab=97.61 E-value=5.2e-05 Score=51.83 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+|+|+|.+|+|||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998753
No 427
>KOG2485|consensus
Probab=97.60 E-value=6.9e-05 Score=54.89 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.1
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++.|+|-||+|||||+|.+...
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~ 166 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNV 166 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHH
Confidence 4689999999999999999987654
No 428
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.59 E-value=5.2e-05 Score=52.06 Aligned_cols=23 Identities=13% Similarity=0.374 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.||+|+|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999876
No 429
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.59 E-value=0.00037 Score=45.93 Aligned_cols=106 Identities=12% Similarity=0.076 Sum_probs=59.0
Q ss_pred EEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeCCCh
Q psy10443 11 VVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVVSP 90 (195)
Q Consensus 11 v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 90 (195)
.-|.+|+|||++...+...-. .....+..-... .......+.+.++|+|+... ......+..+|.++++.+.+ .
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D--~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~ 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALA-KLGKRVLLLDAD--LGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-P 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECC--CCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-h
Confidence 446689999998766544211 110011100000 00001116677999987432 22345788899999999976 4
Q ss_pred hcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcc
Q psy10443 91 SSFDNVTSKWYPELKHHCPDAPIILVGTKIDLR 123 (195)
Q Consensus 91 ~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~ 123 (195)
.++..... .+..+.......++.+++|+.+..
T Consensus 79 ~s~~~~~~-~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 79 TSITDAYA-LIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred hHHHHHHH-HHHHHHHhcCCCCEEEEEeCCCCH
Confidence 44444332 444444444456788999999743
No 430
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00034 Score=57.96 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
--|+++|+.||||||.+..|...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh
Confidence 46899999999999999888753
No 431
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.56 E-value=6.3e-05 Score=49.63 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=18.6
Q ss_pred EEEEcCCCCchHHHHHHhhc
Q psy10443 9 CVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~ 28 (195)
|+++|.|||||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
No 432
>KOG2484|consensus
Probab=97.55 E-value=9.5e-05 Score=55.88 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=36.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcCCC-CCCcccceeeccceeEEeCCEEEEEEEEeCCCC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTDSF-PGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQ 64 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~ 64 (195)
+..+.+.|+|-|++||||+||+|..+.. +....|+...... .+.. +..++ |.|.||-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smq-eV~L-dk~i~--llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQ-EVKL-DKKIR--LLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhh-heec-cCCce--eccCCce
Confidence 4578999999999999999999998754 2222222221111 1222 33444 9999993
No 433
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.55 E-value=0.00072 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.=.|+++|+.||||||-+-.|...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 446899999999999988777654
No 434
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.52 E-value=0.00063 Score=41.39 Aligned_cols=69 Identities=23% Similarity=0.204 Sum_probs=43.3
Q ss_pred EEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCcccccc-CCCCCCCccEEEEEEeC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRL-RPLSYPQTDVFLICYSV 87 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~ 87 (195)
+++.|.+|+||||+...+...-.... .....++ .+.++|+++....... .......+|.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g---------~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG---------KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---------CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 67889999999999988775321111 1111222 4559999876432221 14566688999999887
Q ss_pred CCh
Q psy10443 88 VSP 90 (195)
Q Consensus 88 ~~~ 90 (195)
...
T Consensus 69 ~~~ 71 (99)
T cd01983 69 EAL 71 (99)
T ss_pred chh
Confidence 643
No 435
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.50 E-value=6.7e-05 Score=50.81 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=17.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 436
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.50 E-value=0.00053 Score=53.59 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++|+|++||||||++..|..
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999998876643
No 437
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.50 E-value=0.00012 Score=40.82 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
..+|.|+.|+|||||+..+.--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999887653
No 438
>PRK14530 adenylate kinase; Provisional
Probab=97.48 E-value=0.00011 Score=52.10 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
+|+|+|.|||||||+.+.|..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998865
No 439
>KOG0780|consensus
Probab=97.48 E-value=5.8e-05 Score=56.90 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=20.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++--|.++|..|+||||.+..|..
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~ 123 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAY 123 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHH
Confidence 3566789999999999999977654
No 440
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.47 E-value=0.00018 Score=49.86 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=21.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
++.=|+++|++|||||||+++|...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3455899999999999999999875
No 441
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.47 E-value=0.00011 Score=42.12 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=19.0
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|++.|.+|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998864
No 442
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.44 E-value=0.00014 Score=51.99 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=24.4
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
|--+.+++|+|+|+|||||||+...|...
T Consensus 1 ~~~~~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 1 MKLKGPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33456789999999999999999998763
No 443
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.42 E-value=0.00029 Score=49.70 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
++.-|+|+|++|+|||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4567889999999999999999754
No 444
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.00089 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.3
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
++-.|+++|+.|+||||.+..+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999987754
No 445
>PRK08233 hypothetical protein; Provisional
Probab=97.40 E-value=0.00017 Score=49.63 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=22.3
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
|+.+-|+|.|.+||||||+.++|...
T Consensus 1 ~~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 1 KKTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhh
Confidence 34678899999999999999999863
No 446
>PRK14527 adenylate kinase; Provisional
Probab=97.40 E-value=0.00019 Score=49.97 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=24.6
Q ss_pred CCCCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 1 MSSGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 1 m~~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|+.+++.-|+++|+||+||||+...+..
T Consensus 1 ~~~~~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 1 MTQTKNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 6667778899999999999999998874
No 447
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.40 E-value=0.00067 Score=44.44 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.-.+++.|++|+|||++++.+....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4468999999999999999998753
No 448
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.00026 Score=48.26 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=22.4
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
+..=+++.|++|+|||||++.|....
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 44568899999999999999999764
No 449
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.37 E-value=0.00017 Score=51.63 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
..+++++|+|.+|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999999888753
No 450
>PRK06217 hypothetical protein; Validated
Probab=97.35 E-value=0.00017 Score=49.80 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998864
No 451
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.35 E-value=0.0022 Score=48.81 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=18.5
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 577899999999999999864
No 452
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.34 E-value=0.00025 Score=49.57 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
=.++++|++|||||||++.+.+-+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCc
Confidence 368999999999999999887654
No 453
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.33 E-value=0.00017 Score=55.37 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++..|+++|..|+||||.+..|..
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~ 122 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAK 122 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHH
Confidence 4678999999999999999977654
No 454
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.32 E-value=0.00019 Score=46.28 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=19.1
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998864
No 455
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.30 E-value=0.0002 Score=50.73 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-++++|++|||||||++.+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999998764
No 456
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.29 E-value=0.00021 Score=46.29 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999864
No 457
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.29 E-value=0.00024 Score=46.49 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=.++|+|+.|+|||||++.+.+.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 36899999999999999988864
No 458
>PRK03839 putative kinase; Provisional
Probab=97.29 E-value=0.00021 Score=49.19 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+|+++|.|||||||+.++|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 459
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.27 E-value=0.00025 Score=46.64 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|+++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 460
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.27 E-value=0.00074 Score=49.50 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhc
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.-+++++|.+|+||||++..+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 35899999999999999987654
No 461
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00025 Score=50.60 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
=|+++|++|+|||||++.+.+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999998874
No 462
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.25 E-value=0.00024 Score=46.86 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.|.|+|.+|+|||||+..|.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998763
No 463
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.22 E-value=0.00032 Score=45.64 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCchHHHHHHhhcCCC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTDSF 31 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~~~ 31 (195)
-.++++|++|+|||+++..+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4789999999999999999987543
No 464
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.22 E-value=0.00031 Score=48.66 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++++|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999764
No 465
>KOG2423|consensus
Probab=97.21 E-value=0.0022 Score=48.93 Aligned_cols=87 Identities=17% Similarity=0.152 Sum_probs=63.0
Q ss_pred CCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCC
Q psy10443 75 YPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRA 154 (195)
Q Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
+...|++|-|+|+.||-.-.. .+....++...+...++.|+||+|+...- +....+..+++.++-
T Consensus 211 iDSSDVvvqVlDARDPmGTrc--~~ve~ylkke~phKHli~vLNKvDLVPtw-------------vt~~Wv~~lSkeyPT 275 (572)
T KOG2423|consen 211 IDSSDVVVQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIYVLNKVDLVPTW-------------VTAKWVRHLSKEYPT 275 (572)
T ss_pred hcccceeEEeeeccCCccccc--HHHHHHHhhcCCcceeEEEeeccccccHH-------------HHHHHHHHHhhhCcc
Confidence 446899999999998854322 23556777888889999999999998864 455566777777773
Q ss_pred ceeEEeccCCcccHHHHHHHHHH
Q psy10443 155 VKYMECSALTQRGLRQVFDEAVR 177 (195)
Q Consensus 155 ~~~~~~Sa~~~~~v~~~~~~l~~ 177 (195)
+ -|..|..+..|-..+++.|.+
T Consensus 276 i-AfHAsi~nsfGKgalI~llRQ 297 (572)
T KOG2423|consen 276 I-AFHASINNSFGKGALIQLLRQ 297 (572)
T ss_pred e-eeehhhcCccchhHHHHHHHH
Confidence 3 466777777776666666555
No 466
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.19 E-value=0.0003 Score=48.41 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 467
>PRK14532 adenylate kinase; Provisional
Probab=97.18 E-value=0.00033 Score=48.59 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+|+++|+|||||||+..+|...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999763
No 468
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.17 E-value=0.032 Score=37.79 Aligned_cols=138 Identities=11% Similarity=0.086 Sum_probs=88.1
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEE
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICY 85 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (195)
.-.|+++|..+.++..|...+....- + +. +++.-...-+-. ......=...|.++|++
T Consensus 15 ~atiLLVg~e~~~~~~LA~a~l~~~~------~----~~-----------l~Vh~a~sLPLp-~e~~~lRprIDlIVFvi 72 (176)
T PF11111_consen 15 TATILLVGTEEALLQQLAEAMLEEDK------E----FK-----------LKVHLAKSLPLP-SENNNLRPRIDLIVFVI 72 (176)
T ss_pred eeEEEEecccHHHHHHHHHHHHhhcc------c----ee-----------EEEEEeccCCCc-ccccCCCceeEEEEEEE
Confidence 45899999999999999999885211 0 11 111111100000 00111123579999999
Q ss_pred eCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCCCccHHHHHHHHHHcCCceeEEeccCCc
Q psy10443 86 SVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLSPVKREQGQKLANKIRAVKYMECSALTQ 165 (195)
Q Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (195)
|.+..-|++.++. =+..+...+.-=.++++++.....+. -.+...++.+++..+. +|++.+.-...
T Consensus 73 nl~sk~SL~~ve~-SL~~vd~~fflGKVCfl~t~a~~~~~------------~sv~~~~V~kla~~y~-~plL~~~le~~ 138 (176)
T PF11111_consen 73 NLHSKYSLQSVEA-SLSHVDPSFFLGKVCFLATNAGRESH------------CSVHPNEVRKLAATYN-SPLLFADLENE 138 (176)
T ss_pred ecCCcccHHHHHH-HHhhCChhhhccceEEEEcCCCcccc------------cccCHHHHHHHHHHhC-CCEEEeecccc
Confidence 9999999998875 34444433222345666666655443 2377788999999999 78999888888
Q ss_pred ccHHHHHHHHHHHH
Q psy10443 166 RGLRQVFDEAVRAV 179 (195)
Q Consensus 166 ~~v~~~~~~l~~~~ 179 (195)
++...+-+.|.+.+
T Consensus 139 ~~~~~lAqRLL~~l 152 (176)
T PF11111_consen 139 EGRTSLAQRLLRML 152 (176)
T ss_pred hHHHHHHHHHHHHH
Confidence 77777766666654
No 469
>PRK13949 shikimate kinase; Provisional
Probab=97.17 E-value=0.00035 Score=47.63 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
+|+|+|.+|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998775
No 470
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.16 E-value=0.00036 Score=45.89 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.|+++|++|+|||++++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988763
No 471
>PLN02674 adenylate kinase
Probab=97.16 E-value=0.00041 Score=50.01 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=22.6
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+...+|+++|+|||||+|+..+|...
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~ 54 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDE 54 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHH
Confidence 44688999999999999999998763
No 472
>PLN02200 adenylate kinase family protein
Probab=97.16 E-value=0.00053 Score=49.31 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.6
Q ss_pred cceEEEEEcCCCCchHHHHHHhhc
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.++.|+|+|.|||||||+..+|..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998875
No 473
>PTZ00301 uridine kinase; Provisional
Probab=97.15 E-value=0.00045 Score=48.79 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=21.4
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
|+.+=|.|.|.+|||||||.+.+..
T Consensus 1 ~~~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 1 MPCTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CCCEEEEEECCCcCCHHHHHHHHHH
Confidence 4678899999999999999987653
No 474
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.15 E-value=0.00035 Score=48.31 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
-.|+++|.+||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999974
No 475
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.15 E-value=0.00038 Score=47.90 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-|+++|++|||||||++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999874
No 476
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.14 E-value=0.00038 Score=46.88 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+|+|.|-||+||||+.++|..
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~~ 22 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLRE 22 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHHH
Confidence 3799999999999999999983
No 477
>PRK06547 hypothetical protein; Provisional
Probab=97.14 E-value=0.00048 Score=47.07 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.....|+|.|.+||||||+.+.|...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56788999999999999999999753
No 478
>PRK14531 adenylate kinase; Provisional
Probab=97.14 E-value=0.00043 Score=47.83 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.+|+++|+|||||||+.+.+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988653
No 479
>KOG2423|consensus
Probab=97.14 E-value=0.00069 Score=51.50 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=51.3
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhcCCCCCCcccceeec-cceeEEeCCEEEEEEEEeCCCCcccc--ccCCCCCCCcc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTVFDN-YSAPFTVDGIPVSLGLWDTAGQEDYD--RLRPLSYPQTD 79 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~~~D~~G~~~~~--~~~~~~~~~~d 79 (195)
.++.+-|.++|-||+||||+||.|.....-. -.|..+.. ...-++ ..-++-++|+||--... +.....+ -
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCk-vAPIpGETKVWQYIt---LmkrIfLIDcPGvVyps~dset~ivL---k 376 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCK-VAPIPGETKVWQYIT---LMKRIFLIDCPGVVYPSSDSETDIVL---K 376 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhccccc-ccCCCCcchHHHHHH---HHhceeEecCCCccCCCCCchHHHHh---h
Confidence 3678999999999999999999998765421 12222221 111011 11245599999953222 2222233 4
Q ss_pred EEEEEEeCCChhcHH
Q psy10443 80 VFLICYSVVSPSSFD 94 (195)
Q Consensus 80 ~~i~v~d~~~~~s~~ 94 (195)
+++=|=++++|+.+-
T Consensus 377 GvVRVenv~~pe~yi 391 (572)
T KOG2423|consen 377 GVVRVENVKNPEDYI 391 (572)
T ss_pred ceeeeeecCCHHHHH
Confidence 677788888876654
No 480
>KOG3347|consensus
Probab=97.14 E-value=0.00033 Score=45.96 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=22.1
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
....||+|.|-||+||||+..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 3467999999999999999999875
No 481
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.13 E-value=0.00052 Score=47.09 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=22.7
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.++.-|++.|.+|+||||+.+.+...
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 56789999999999999999888753
No 482
>PRK01889 GTPase RsgA; Reviewed
Probab=97.13 E-value=0.00059 Score=52.20 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
-.++++|.+|+|||||++.+.+.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47899999999999999999974
No 483
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.12 E-value=0.0016 Score=48.58 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.5
Q ss_pred CcceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 4 GRPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 4 ~~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.+++-|+++|-.|+||||-+..|...
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~ 162 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKY 162 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHH
Confidence 46889999999999999999877653
No 484
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.12 E-value=0.00045 Score=43.11 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCchHHHHHHhh
Q psy10443 7 IKCVVVGDGTVGKTCMLISYT 27 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~ 27 (195)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 468999999999999999876
No 485
>PRK00625 shikimate kinase; Provisional
Probab=97.11 E-value=0.00045 Score=47.28 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
+|+++|.+||||||+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998865
No 486
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.10 E-value=0.00059 Score=51.43 Aligned_cols=94 Identities=21% Similarity=0.228 Sum_probs=60.5
Q ss_pred eCCCCc-cccccCCCCCCCccEEEEEEeCCChhcHHHHHHhhHHHHhhhCCCCcEEEEeeCCCcccchHhhhhhhhcCCC
Q psy10443 60 DTAGQE-DYDRLRPLSYPQTDVFLICYSVVSPSSFDNVTSKWYPELKHHCPDAPIILVGTKIDLREDRETLNLLSEQNLS 138 (195)
Q Consensus 60 D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~vvv~nK~D~~~~~~~~~~~~~~~~~ 138 (195)
+.||+. .+.......+...|+++-|+|+-+|.+-.. ..+.....+.|.++|+||+|+....
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~------~~l~~~v~~k~~i~vlNK~DL~~~~------------ 77 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN------PELERIVKEKPKLLVLNKADLAPKE------------ 77 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC------ccHHHHHccCCcEEEEehhhcCCHH------------
Confidence 446653 444556677889999999999999876332 2333333356669999999998864
Q ss_pred CccHHHHHHHHHHcCCceeEEeccCCcccHHHHHH
Q psy10443 139 PVKREQGQKLANKIRAVKYMECSALTQRGLRQVFD 173 (195)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 173 (195)
...+..+.|.+..+ ...+.++++.+.+...+..
T Consensus 78 -~~~~W~~~~~~~~~-~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 78 -VTKKWKKYFKKEEG-IKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred -HHHHHHHHHHhcCC-CccEEEEeecccCccchHH
Confidence 22333444444443 4567777777776666653
No 487
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.10 E-value=0.00053 Score=46.92 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 6 PIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 6 ~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
.-+|+++|.+|+||||+.+.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999998753
No 488
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.09 E-value=0.0012 Score=43.03 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
--|++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999875
No 489
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.08 E-value=0.00042 Score=48.21 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+|+|+|.|||||||+...|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 490
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.06 E-value=0.00046 Score=48.30 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=18.9
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|.|.|++|||||||.+.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998763
No 491
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.06 E-value=0.00047 Score=47.57 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=18.9
Q ss_pred EEEEcCCCCchHHHHHHhhcC
Q psy10443 9 CVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 9 i~v~G~~~~GKtsli~~l~~~ 29 (195)
|+++|.|||||||+..+|...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998763
No 492
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.05 E-value=0.00057 Score=46.63 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcCC
Q psy10443 8 KCVVVGDGTVGKTCMLISYTTDS 30 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~~~ 30 (195)
.++|+|++|+|||||+|-+.+=.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhcc
Confidence 78999999999999999988643
No 493
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.04 E-value=0.0024 Score=39.64 Aligned_cols=78 Identities=18% Similarity=0.173 Sum_probs=46.1
Q ss_pred EEEEcC-CCCchHHHHHHhhcCCCCCCcccceeeccceeEEeCCEEEEEEEEeCCCCccccccCCCCCCCccEEEEEEeC
Q psy10443 9 CVVVGD-GTVGKTCMLISYTTDSFPGEYVPTVFDNYSAPFTVDGIPVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSV 87 (195)
Q Consensus 9 i~v~G~-~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 87 (195)
|+|.|. +|+||||+...+...-. ....++.. +..+ ..+.+.++|+|+..... ....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~-~~~~~vl~------~d~d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA-RRGKRVLL------IDLD-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH-hCCCcEEE------EeCC-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence 567775 68999999877654211 11111111 1111 11567799998864322 23567789999999987
Q ss_pred CChhcHHHHH
Q psy10443 88 VSPSSFDNVT 97 (195)
Q Consensus 88 ~~~~s~~~~~ 97 (195)
+ ..++....
T Consensus 72 ~-~~s~~~~~ 80 (104)
T cd02042 72 S-PLDLDGLE 80 (104)
T ss_pred C-HHHHHHHH
Confidence 4 44555554
No 494
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.04 E-value=0.00048 Score=44.62 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
--++|.|++|+|||++++++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHH
Confidence 34789999999999999999874
No 495
>PRK15453 phosphoribulokinase; Provisional
Probab=97.04 E-value=0.00073 Score=49.51 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=22.3
Q ss_pred CCcceEEEEEcCCCCchHHHHHHhhc
Q psy10443 3 SGRPIKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 3 ~~~~~~i~v~G~~~~GKtsli~~l~~ 28 (195)
+.++.-|+|.|.+||||||+.+.+..
T Consensus 2 s~k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 2 SAKHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45667899999999999999998763
No 496
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.03 E-value=0.00071 Score=47.57 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCCchHHHHHHhhcC
Q psy10443 5 RPIKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 5 ~~~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
+.--|+++|++|||||||++.+.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4456899999999999999998874
No 497
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.00056 Score=48.48 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999999886
No 498
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.02 E-value=0.0021 Score=41.25 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCchHHHHHHhhcC
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTTD 29 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~~ 29 (195)
--|++-|+=|+|||||++.+...
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999998874
No 499
>PRK02496 adk adenylate kinase; Provisional
Probab=97.01 E-value=0.00069 Score=46.84 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCchHHHHHHhhc
Q psy10443 7 IKCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 7 ~~i~v~G~~~~GKtsli~~l~~ 28 (195)
.+|+|+|+||+||||+.+.+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
No 500
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.01 E-value=0.00052 Score=48.53 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q psy10443 8 KCVVVGDGTVGKTCMLISYTT 28 (195)
Q Consensus 8 ~i~v~G~~~~GKtsli~~l~~ 28 (195)
+|+|+|+|||||||+..+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
Done!